
PFRMAT TS
TARGET T0357
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0357 model 3 Wed Jul  5 18:19:32 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  3
PARENT N/A
ATOM      2  N   ILE    53      -3.442   2.795  -4.968  1.00  0.00
ATOM      3  CA  ILE    53      -2.224   2.268  -4.353  1.00  0.00
ATOM      4  CB  ILE    53      -1.431   3.374  -3.634  1.00  0.00
ATOM      5  CG1 ILE    53      -0.019   2.888  -3.303  1.00  0.00
ATOM      6  CG2 ILE    53      -2.122   3.769  -2.338  1.00  0.00
ATOM      7  CD1 ILE    53       0.919   3.992  -2.867  1.00  0.00
ATOM      8  O   ILE    53      -3.532   0.939  -2.835  1.00  0.00
ATOM      9  C   ILE    53      -2.427   1.182  -3.304  1.00  0.00
ATOM     10  N   LEU    54      -1.319   0.551  -2.950  1.00  0.00
ATOM     11  CA  LEU    54      -1.265  -0.478  -1.922  1.00  0.00
ATOM     12  CB  LEU    54      -0.693  -1.776  -2.492  1.00  0.00
ATOM     13  CG  LEU    54      -1.468  -2.409  -3.649  1.00  0.00
ATOM     14  CD1 LEU    54      -0.721  -3.614  -4.202  1.00  0.00
ATOM     15  CD2 LEU    54      -2.841  -2.870  -3.187  1.00  0.00
ATOM     16  O   LEU    54       0.609   0.827  -1.164  1.00  0.00
ATOM     17  C   LEU    54      -0.352   0.114  -0.840  1.00  0.00
ATOM     18  N   VAL    55      -0.648  -0.163   0.427  1.00  0.00
ATOM     19  CA  VAL    55       0.158   0.350   1.537  1.00  0.00
ATOM     20  CB  VAL    55      -0.697   1.171   2.522  1.00  0.00
ATOM     21  CG1 VAL    55       0.155   1.660   3.684  1.00  0.00
ATOM     22  CG2 VAL    55      -1.299   2.380   1.824  1.00  0.00
ATOM     23  O   VAL    55       0.122  -1.611   2.918  1.00  0.00
ATOM     24  C   VAL    55       0.817  -0.765   2.349  1.00  0.00
ATOM     25  N   PHE    56       2.147  -0.764   2.405  1.00  0.00
ATOM     26  CA  PHE    56       2.874  -1.767   3.176  1.00  0.00
ATOM     27  CB  PHE    56       4.382  -1.562   3.036  1.00  0.00
ATOM     28  CG  PHE    56       5.204  -2.607   3.735  1.00  0.00
ATOM     29  CD1 PHE    56       5.358  -3.868   3.187  1.00  0.00
ATOM     30  CD2 PHE    56       5.824  -2.327   4.941  1.00  0.00
ATOM     31  CE1 PHE    56       6.115  -4.830   3.830  1.00  0.00
ATOM     32  CE2 PHE    56       6.580  -3.289   5.585  1.00  0.00
ATOM     33  CZ  PHE    56       6.726  -4.536   5.035  1.00  0.00
ATOM     34  O   PHE    56       2.698  -0.556   5.254  1.00  0.00
ATOM     35  C   PHE    56       2.445  -1.592   4.638  1.00  0.00
ATOM     36  N   GLY    59       1.789  -2.608   5.191  1.00  0.00
ATOM     37  CA  GLY    59       1.248  -2.507   6.545  1.00  0.00
ATOM     38  O   GLY    59       1.723  -4.757   7.244  1.00  0.00
ATOM     39  C   GLY    59       1.707  -3.564   7.546  1.00  0.00
ATOM     40  N   LYS    60       2.040  -3.123   8.754  1.00  0.00
ATOM     41  CA  LYS    60       2.500  -4.031   9.795  1.00  0.00
ATOM     42  CB  LYS    60       4.012  -3.904   9.986  1.00  0.00
ATOM     43  CG  LYS    60       4.832  -4.421   8.815  1.00  0.00
ATOM     44  CD  LYS    60       6.316  -4.435   9.143  1.00  0.00
ATOM     45  CE  LYS    60       6.879  -3.025   9.211  1.00  0.00
ATOM     46  NZ  LYS    60       8.283  -3.010   9.711  1.00  0.00
ATOM     47  O   LYS    60       1.947  -4.549  12.087  1.00  0.00
ATOM     48  C   LYS    60       1.841  -3.748  11.142  1.00  0.00
ATOM     49  N   GLY    61       1.167  -2.605  11.229  1.00  0.00
ATOM     50  CA  GLY    61       0.493  -2.238  12.458  1.00  0.00
ATOM     51  O   GLY    61       0.576  -0.502  14.085  1.00  0.00
ATOM     52  C   GLY    61       1.185  -1.137  13.230  1.00  0.00
ATOM     53  N   SER    62       2.454  -0.901  12.916  1.00  0.00
ATOM     54  CA  SER    62       3.232   0.113  13.610  1.00  0.00
ATOM     55  CB  SER    62       4.712  -0.000  13.238  1.00  0.00
ATOM     56  OG  SER    62       4.926   0.348  11.881  1.00  0.00
ATOM     57  O   SER    62       1.977   1.826  12.500  1.00  0.00
ATOM     58  C   SER    62       2.849   1.552  13.323  1.00  0.00
ATOM     59  N   THR    63       3.518   2.479  14.011  1.00  0.00
ATOM     60  CA  THR    63       3.227   3.891  13.841  1.00  0.00
ATOM     61  CB  THR    63       4.062   4.759  14.799  1.00  0.00
ATOM     62  CG2 THR    63       3.769   6.235  14.576  1.00  0.00
ATOM     63  OG1 THR    63       3.742   4.423  16.156  1.00  0.00
ATOM     64  O   THR    63       2.812   5.141  11.830  1.00  0.00
ATOM     65  C   THR    63       3.540   4.333  12.412  1.00  0.00
ATOM     66  N   VAL    64       4.609   3.770  11.853  1.00  0.00
ATOM     67  CA  VAL    64       5.065   4.101  10.510  1.00  0.00
ATOM     68  CB  VAL    64       6.394   3.399  10.175  1.00  0.00
ATOM     69  CG1 VAL    64       6.754   3.607   8.712  1.00  0.00
ATOM     70  CG2 VAL    64       7.520   3.958  11.031  1.00  0.00
ATOM     71  O   VAL    64       3.818   4.523   8.506  1.00  0.00
ATOM     72  C   VAL    64       4.102   3.708   9.396  1.00  0.00
ATOM     73  N   GLY    65       3.629   2.461   9.436  1.00  0.00
ATOM     74  CA  GLY    65       2.699   1.948   8.435  1.00  0.00
ATOM     75  O   GLY    65       0.845   3.096   7.415  1.00  0.00
ATOM     76  C   GLY    65       1.418   2.763   8.459  1.00  0.00
ATOM     77  N   SER    66       0.968   3.077   9.664  1.00  0.00
ATOM     78  CA  SER    66      -0.250   3.846   9.830  1.00  0.00
ATOM     79  CB  SER    66      -0.706   3.817  11.291  1.00  0.00
ATOM     80  OG  SER    66       0.220   4.487  12.129  1.00  0.00
ATOM     81  O   SER    66      -0.967   5.943   8.948  1.00  0.00
ATOM     82  C   SER    66      -0.042   5.291   9.431  1.00  0.00
ATOM     83  N   TYR    67       1.174   5.795   9.620  1.00  0.00
ATOM     84  CA  TYR    67       1.454   7.174   9.256  1.00  0.00
ATOM     85  CB  TYR    67       2.852   7.579   9.722  1.00  0.00
ATOM     86  CG  TYR    67       3.232   8.998   9.361  1.00  0.00
ATOM     87  CD1 TYR    67       2.753  10.072  10.097  1.00  0.00
ATOM     88  CD2 TYR    67       4.070   9.256   8.283  1.00  0.00
ATOM     89  CE1 TYR    67       3.095  11.372   9.775  1.00  0.00
ATOM     90  CE2 TYR    67       4.423  10.549   7.946  1.00  0.00
ATOM     91  CZ  TYR    67       3.926  11.609   8.702  1.00  0.00
ATOM     92  OH  TYR    67       4.268  12.902   8.377  1.00  0.00
ATOM     93  O   TYR    67       0.676   8.148   7.206  1.00  0.00
ATOM     94  C   TYR    67       1.363   7.278   7.740  1.00  0.00
ATOM     95  N   VAL    68       2.068   6.385   7.056  1.00  0.00
ATOM     96  CA  VAL    68       2.045   6.355   5.605  1.00  0.00
ATOM     97  CB  VAL    68       2.885   5.190   5.050  1.00  0.00
ATOM     98  CG1 VAL    68       2.687   5.057   3.549  1.00  0.00
ATOM     99  CG2 VAL    68       4.364   5.425   5.321  1.00  0.00
ATOM    100  O   VAL    68       0.156   6.853   4.207  1.00  0.00
ATOM    101  C   VAL    68       0.607   6.184   5.139  1.00  0.00
ATOM    102  N   LEU    69      -0.120   5.292   5.796  1.00  0.00
ATOM    103  CA  LEU    69      -1.507   5.039   5.434  1.00  0.00
ATOM    104  CB  LEU    69      -2.092   3.925   6.304  1.00  0.00
ATOM    105  CG  LEU    69      -3.546   3.538   6.023  1.00  0.00
ATOM    106  CD1 LEU    69      -3.699   3.022   4.600  1.00  0.00
ATOM    107  CD2 LEU    69      -4.006   2.447   6.977  1.00  0.00
ATOM    108  O   LEU    69      -3.227   6.582   4.807  1.00  0.00
ATOM    109  C   LEU    69      -2.357   6.283   5.624  1.00  0.00
ATOM    110  N   LEU    70      -2.117   6.995   6.721  1.00  0.00
ATOM    111  CA  LEU    70      -2.854   8.220   7.004  1.00  0.00
ATOM    112  CB  LEU    70      -2.388   8.831   8.328  1.00  0.00
ATOM    113  CG  LEU    70      -3.066  10.137   8.747  1.00  0.00
ATOM    114  CD1 LEU    70      -4.559   9.928   8.945  1.00  0.00
ATOM    115  CD2 LEU    70      -2.481  10.651  10.054  1.00  0.00
ATOM    116  O   LEU    70      -3.538   9.783   5.304  1.00  0.00
ATOM    117  C   LEU    70      -2.606   9.225   5.870  1.00  0.00
ATOM    118  N   ASN    71      -1.335   9.423   5.538  1.00  0.00
ATOM    119  CA  ASN    71      -0.931  10.353   4.490  1.00  0.00
ATOM    120  CB  ASN    71       0.590  10.359   4.335  1.00  0.00
ATOM    121  CG  ASN    71       1.290  11.062   5.480  1.00  0.00
ATOM    122  ND2 ASN    71       2.575  10.771   5.657  1.00  0.00
ATOM    123  OD1 ASN    71       0.683  11.858   6.197  1.00  0.00
ATOM    124  O   ASN    71      -1.774  10.931   2.322  1.00  0.00
ATOM    125  C   ASN    71      -1.510  10.028   3.114  1.00  0.00
ATOM    126  N   LEU    72      -1.685   8.741   2.819  1.00  0.00
ATOM    127  CA  LEU    72      -2.247   8.338   1.532  1.00  0.00
ATOM    128  CB  LEU    72      -2.122   6.824   1.343  1.00  0.00
ATOM    129  CG  LEU    72      -0.704   6.281   1.144  1.00  0.00
ATOM    130  CD1 LEU    72      -0.711   4.761   1.116  1.00  0.00
ATOM    131  CD2 LEU    72      -0.120   6.778  -0.170  1.00  0.00
ATOM    132  O   LEU    72      -4.162   9.478   0.632  1.00  0.00
ATOM    133  C   LEU    72      -3.712   8.735   1.512  1.00  0.00
ATOM    134  N   ARG    73      -4.462   8.234   2.486  1.00  0.00
ATOM    135  CA  ARG    73      -5.880   8.557   2.582  1.00  0.00
ATOM    136  CB  ARG    73      -6.468   8.008   3.883  1.00  0.00
ATOM    137  CG  ARG    73      -7.958   8.261   4.045  1.00  0.00
ATOM    138  CD  ARG    73      -8.476   7.688   5.355  1.00  0.00
ATOM    139  NE  ARG    73      -9.912   7.900   5.515  1.00  0.00
ATOM    140  CZ  ARG    73     -10.583   7.652   6.635  1.00  0.00
ATOM    141  NH1 ARG    73     -11.889   7.875   6.687  1.00  0.00
ATOM    142  NH2 ARG    73      -9.946   7.183   7.699  1.00  0.00
ATOM    143  O   ARG    73      -6.723  10.599   1.638  1.00  0.00
ATOM    144  C   ARG    73      -6.111  10.069   2.560  1.00  0.00
ATOM    145  N   LYS    74      -5.597  10.761   3.568  1.00  0.00
ATOM    146  CA  LYS    74      -5.768  12.203   3.683  1.00  0.00
ATOM    147  CB  LYS    74      -4.937  12.749   4.845  1.00  0.00
ATOM    148  CG  LYS    74      -5.058  14.251   5.041  1.00  0.00
ATOM    149  CD  LYS    74      -4.267  14.716   6.253  1.00  0.00
ATOM    150  CE  LYS    74      -4.415  16.213   6.469  1.00  0.00
ATOM    151  NZ  LYS    74      -3.625  16.687   7.638  1.00  0.00
ATOM    152  O   LYS    74      -5.895  14.116   2.223  1.00  0.00
ATOM    153  C   LYS    74      -5.352  13.037   2.453  1.00  0.00
ATOM    154  N   ASN    75      -4.411  12.555   1.651  1.00  0.00
ATOM    155  CA  ASN    75      -4.023  13.327   0.481  1.00  0.00
ATOM    156  CB  ASN    75      -2.509  13.257   0.271  1.00  0.00
ATOM    157  CG  ASN    75      -1.738  14.001   1.343  1.00  0.00
ATOM    158  ND2 ASN    75      -0.487  13.605   1.553  1.00  0.00
ATOM    159  OD1 ASN    75      -2.261  14.920   1.974  1.00  0.00
ATOM    160  O   ASN    75      -4.146  12.864  -1.886  1.00  0.00
ATOM    161  C   ASN    75      -4.702  12.796  -0.788  1.00  0.00
ATOM    162  N   GLY    76      -5.907  12.259  -0.615  1.00  0.00
ATOM    163  CA  GLY    76      -6.688  11.762  -1.738  1.00  0.00
ATOM    164  O   GLY    76      -6.869  10.265  -3.574  1.00  0.00
ATOM    165  C   GLY    76      -6.289  10.522  -2.522  1.00  0.00
ATOM    166  N   VAL    77      -5.313   9.757  -2.050  1.00  0.00
ATOM    167  CA  VAL    77      -4.922   8.545  -2.764  1.00  0.00
ATOM    168  CB  VAL    77      -3.553   8.026  -2.290  1.00  0.00
ATOM    169  CG1 VAL    77      -3.241   6.681  -2.930  1.00  0.00
ATOM    170  CG2 VAL    77      -2.452   9.006  -2.668  1.00  0.00
ATOM    171  O   VAL    77      -6.590   7.392  -1.466  1.00  0.00
ATOM    172  C   VAL    77      -5.959   7.445  -2.527  1.00  0.00
ATOM    173  N   ALA    78      -6.154   6.580  -3.519  1.00  0.00
ATOM    174  CA  ALA    78      -7.107   5.487  -3.366  1.00  0.00
ATOM    175  CB  ALA    78      -7.785   5.185  -4.694  1.00  0.00
ATOM    176  O   ALA    78      -5.514   3.707  -3.627  1.00  0.00
ATOM    177  C   ALA    78      -6.337   4.263  -2.889  1.00  0.00
ATOM    178  N   PRO    79      -6.591   3.857  -1.646  1.00  0.00
ATOM    179  CA  PRO    79      -5.900   2.708  -1.061  1.00  0.00
ATOM    180  CB  PRO    79      -5.763   3.072   0.418  1.00  0.00
ATOM    181  CG  PRO    79      -6.894   4.009   0.678  1.00  0.00
ATOM    182  CD  PRO    79      -7.195   4.674  -0.636  1.00  0.00
ATOM    183  O   PRO    79      -7.677   1.209  -0.527  1.00  0.00
ATOM    184  C   PRO    79      -6.714   1.448  -1.254  1.00  0.00
ATOM    185  N   LYS    80      -6.309   0.651  -2.241  1.00  0.00
ATOM    186  CA  LYS    80      -6.989  -0.591  -2.582  1.00  0.00
ATOM    187  CB  LYS    80      -6.535  -1.091  -3.955  1.00  0.00
ATOM    188  CG  LYS    80      -7.026  -0.243  -5.118  1.00  0.00
ATOM    189  CD  LYS    80      -6.544  -0.798  -6.448  1.00  0.00
ATOM    190  CE  LYS    80      -7.006   0.069  -7.608  1.00  0.00
ATOM    191  NZ  LYS    80      -6.520  -0.449  -8.917  1.00  0.00
ATOM    192  O   LYS    80      -7.612  -2.440  -1.184  1.00  0.00
ATOM    193  C   LYS    80      -6.707  -1.705  -1.573  1.00  0.00
ATOM    194  N   ALA    81      -5.456  -1.819  -1.145  1.00  0.00
ATOM    195  CA  ALA    81      -5.066  -2.877  -0.211  1.00  0.00
ATOM    196  CB  ALA    81      -4.526  -4.081  -0.968  1.00  0.00
ATOM    197  O   ALA    81      -3.173  -1.595   0.543  1.00  0.00
ATOM    198  C   ALA    81      -3.984  -2.490   0.793  1.00  0.00
ATOM    199  N   ILE    82      -3.987  -3.185   1.929  1.00  0.00
ATOM    200  CA  ILE    82      -2.941  -3.029   2.938  1.00  0.00
ATOM    201  CB  ILE    82      -3.536  -2.924   4.355  1.00  0.00
ATOM    202  CG1 ILE    82      -4.447  -1.700   4.462  1.00  0.00
ATOM    203  CG2 ILE    82      -2.428  -2.792   5.389  1.00  0.00
ATOM    204  CD1 ILE    82      -5.250  -1.646   5.743  1.00  0.00
ATOM    205  O   ILE    82      -2.855  -5.377   2.525  1.00  0.00
ATOM    206  C   ILE    82      -2.212  -4.333   2.650  1.00  0.00
ATOM    207  N   ILE    83      -0.897  -4.274   2.501  1.00  0.00
ATOM    208  CA  ILE    83      -0.110  -5.465   2.208  1.00  0.00
ATOM    209  CB  ILE    83       0.727  -5.287   0.929  1.00  0.00
ATOM    210  CG1 ILE    83      -0.181  -4.986  -0.266  1.00  0.00
ATOM    211  CG2 ILE    83       1.516  -6.552   0.628  1.00  0.00
ATOM    212  CD1 ILE    83       0.571  -4.609  -1.524  1.00  0.00
ATOM    213  O   ILE    83       1.860  -5.085   3.525  1.00  0.00
ATOM    214  C   ILE    83       0.843  -5.762   3.360  1.00  0.00
ATOM    215  N   ASN    84       0.501  -6.780   4.149  1.00  0.00
ATOM    216  CA  ASN    84       1.279  -7.175   5.320  1.00  0.00
ATOM    217  CB  ASN    84       0.361  -7.393   6.524  1.00  0.00
ATOM    218  CG  ASN    84       1.128  -7.685   7.798  1.00  0.00
ATOM    219  ND2 ASN    84       0.492  -7.450   8.940  1.00  0.00
ATOM    220  OD1 ASN    84       2.282  -8.116   7.754  1.00  0.00
ATOM    221  O   ASN    84       1.480  -9.566   5.131  1.00  0.00
ATOM    222  C   ASN    84       2.058  -8.471   5.107  1.00  0.00
ATOM    223  N   LYS    85       3.363  -8.340   4.898  1.00  0.00
ATOM    224  CA  LYS    85       4.232  -9.493   4.695  1.00  0.00
ATOM    225  CB  LYS    85       5.317  -9.172   3.665  1.00  0.00
ATOM    226  CG  LYS    85       6.252 -10.333   3.366  1.00  0.00
ATOM    227  CD  LYS    85       7.329  -9.931   2.371  1.00  0.00
ATOM    228  CE  LYS    85       8.281 -11.084   2.094  1.00  0.00
ATOM    229  NZ  LYS    85       9.357 -10.698   1.139  1.00  0.00
ATOM    230  O   LYS    85       5.346  -8.972   6.761  1.00  0.00
ATOM    231  C   LYS    85       4.891  -9.855   6.028  1.00  0.00
ATOM    232  N   LYS    86       4.934 -11.146   6.343  1.00  0.00
ATOM    233  CA  LYS    86       5.564 -11.615   7.578  1.00  0.00
ATOM    234  CB  LYS    86       4.510 -12.162   8.543  1.00  0.00
ATOM    235  CG  LYS    86       3.537 -11.114   9.060  1.00  0.00
ATOM    236  CD  LYS    86       2.547 -11.717  10.044  1.00  0.00
ATOM    237  CE  LYS    86       1.531 -10.686  10.505  1.00  0.00
ATOM    238  NZ  LYS    86       0.553 -11.263  11.469  1.00  0.00
ATOM    239  O   LYS    86       6.322 -13.566   6.399  1.00  0.00
ATOM    240  C   LYS    86       6.568 -12.729   7.267  1.00  0.00
ATOM    241  N   THR    87       7.705 -12.728   7.956  1.00  0.00
ATOM    242  CA  THR    87       8.723 -13.759   7.728  1.00  0.00
ATOM    243  CB  THR    87      10.103 -13.137   7.443  1.00  0.00
ATOM    244  CG2 THR    87      10.026 -12.203   6.245  1.00  0.00
ATOM    245  OG1 THR    87      10.540 -12.390   8.585  1.00  0.00
ATOM    246  O   THR    87       8.515 -14.238  10.060  1.00  0.00
ATOM    247  C   THR    87       8.856 -14.650   8.953  1.00  0.00
ATOM    248  N   GLU    88       9.354 -15.868   8.756  1.00  0.00
ATOM    249  CA  GLU    88       9.535 -16.795   9.871  1.00  0.00
ATOM    250  CB  GLU    88      10.100 -18.128   9.374  1.00  0.00
ATOM    251  CG  GLU    88       9.181 -18.874   8.420  1.00  0.00
ATOM    252  CD  GLU    88       9.811 -20.142   7.878  1.00  0.00
ATOM    253  OE1 GLU    88      10.974 -20.426   8.231  1.00  0.00
ATOM    254  OE2 GLU    88       9.140 -20.851   7.100  1.00  0.00
ATOM    255  O   GLU    88      11.673 -15.962  10.609  1.00  0.00
ATOM    256  C   GLU    88      10.505 -16.227  10.913  1.00  0.00
ATOM    260  N   ILE   100     -10.576  -1.589   5.146  1.00  0.00
ATOM    261  CA  ILE   100      -9.739  -1.788   3.959  1.00  0.00
ATOM    262  CB  ILE   100      -8.520  -0.845   3.966  1.00  0.00
ATOM    263  CG1 ILE   100      -8.972   0.613   3.859  1.00  0.00
ATOM    264  CG2 ILE   100      -7.603  -1.152   2.791  1.00  0.00
ATOM    265  CD1 ILE   100      -7.860   1.614   4.071  1.00  0.00
ATOM    266  O   ILE   100      -8.564  -3.711   4.806  1.00  0.00
ATOM    267  C   ILE   100      -9.207  -3.219   3.879  1.00  0.00
ATOM    268  N   PRO   101      -9.446  -3.900   2.752  1.00  0.00
ATOM    269  CA  PRO   101      -8.969  -5.277   2.598  1.00  0.00
ATOM    270  CB  PRO   101      -9.239  -5.600   1.127  1.00  0.00
ATOM    271  CG  PRO   101     -10.385  -4.719   0.755  1.00  0.00
ATOM    272  CD  PRO   101     -10.160  -3.417   1.473  1.00  0.00
ATOM    273  O   PRO   101      -6.678  -4.543   2.535  1.00  0.00
ATOM    274  C   PRO   101      -7.476  -5.396   2.929  1.00  0.00
ATOM    275  N   LEU   102      -7.094  -6.448   3.646  1.00  0.00
ATOM    276  CA  LEU   102      -5.686  -6.639   3.970  1.00  0.00
ATOM    277  CB  LEU   102      -5.485  -6.669   5.487  1.00  0.00
ATOM    278  CG  LEU   102      -4.058  -6.929   5.976  1.00  0.00
ATOM    279  CD1 LEU   102      -3.144  -5.772   5.603  1.00  0.00
ATOM    280  CD2 LEU   102      -4.029  -7.089   7.489  1.00  0.00
ATOM    281  O   LEU   102      -5.822  -8.989   3.510  1.00  0.00
ATOM    282  C   LEU   102      -5.170  -7.949   3.395  1.00  0.00
ATOM    283  N   VAL   103      -4.001  -7.878   2.766  1.00  0.00
ATOM    284  CA  VAL   103      -3.363  -9.031   2.145  1.00  0.00
ATOM    285  CB  VAL   103      -2.787  -8.680   0.762  1.00  0.00
ATOM    286  CG1 VAL   103      -2.093  -9.888   0.151  1.00  0.00
ATOM    287  CG2 VAL   103      -3.895  -8.235  -0.180  1.00  0.00
ATOM    288  O   VAL   103      -1.263  -8.789   3.279  1.00  0.00
ATOM    289  C   VAL   103      -2.222  -9.523   3.031  1.00  0.00
ATOM    290  N   GLU   104      -2.330 -10.761   3.506  1.00  0.00
ATOM    291  CA  GLU   104      -1.293 -11.346   4.342  1.00  0.00
ATOM    292  CB  GLU   104      -1.913 -12.242   5.417  1.00  0.00
ATOM    293  CG  GLU   104      -0.898 -12.906   6.333  1.00  0.00
ATOM    294  CD  GLU   104      -1.547 -13.796   7.374  1.00  0.00
ATOM    295  OE1 GLU   104      -2.792 -13.894   7.378  1.00  0.00
ATOM    296  OE2 GLU   104      -0.811 -14.393   8.187  1.00  0.00
ATOM    297  O   GLU   104      -0.762 -13.174   2.901  1.00  0.00
ATOM    298  C   GLU   104      -0.348 -12.188   3.496  1.00  0.00
ATOM    299  N   VAL   105       0.920 -11.783   3.453  1.00  0.00
ATOM    300  CA  VAL   105       1.923 -12.507   2.700  1.00  0.00
ATOM    301  CB  VAL   105       2.788 -11.555   1.852  1.00  0.00
ATOM    302  CG1 VAL   105       3.874 -12.329   1.121  1.00  0.00
ATOM    303  CG2 VAL   105       1.934 -10.835   0.820  1.00  0.00
ATOM    304  O   VAL   105       3.130 -12.743   4.754  1.00  0.00
ATOM    305  C   VAL   105       2.821 -13.248   3.673  1.00  0.00
ATOM    306  N   ARG   106       3.245 -14.448   3.297  1.00  0.00
ATOM    307  CA  ARG   106       4.077 -15.256   4.175  1.00  0.00
ATOM    308  CB  ARG   106       3.314 -16.495   4.644  1.00  0.00
ATOM    309  CG  ARG   106       2.134 -16.192   5.554  1.00  0.00
ATOM    310  CD  ARG   106       1.406 -17.464   5.957  1.00  0.00
ATOM    311  NE  ARG   106       0.194 -17.180   6.722  1.00  0.00
ATOM    312  CZ  ARG   106      -0.644 -18.112   7.166  1.00  0.00
ATOM    313  NH1 ARG   106      -1.721 -17.761   7.855  1.00  0.00
ATOM    314  NH2 ARG   106      -0.402 -19.393   6.922  1.00  0.00
ATOM    315  O   ARG   106       5.316 -16.378   2.440  1.00  0.00
ATOM    316  C   ARG   106       5.359 -15.742   3.495  1.00  0.00
ATOM    320  N   GLU   108      11.091 -11.681  -3.366  1.00  0.00
ATOM    321  CA  GLU   108      10.311 -12.231  -4.463  1.00  0.00
ATOM    322  CB  GLU   108      10.863 -13.594  -4.882  1.00  0.00
ATOM    323  CG  GLU   108      12.207 -13.529  -5.587  1.00  0.00
ATOM    324  CD  GLU   108      12.780 -14.903  -5.878  1.00  0.00
ATOM    325  OE1 GLU   108      12.161 -15.905  -5.463  1.00  0.00
ATOM    326  OE2 GLU   108      13.847 -14.977  -6.521  1.00  0.00
ATOM    327  O   GLU   108       7.949 -12.107  -4.782  1.00  0.00
ATOM    328  C   GLU   108       8.871 -12.396  -4.026  1.00  0.00
ATOM    329  N   LYS   109       8.683 -12.865  -2.798  1.00  0.00
ATOM    330  CA  LYS   109       7.343 -13.065  -2.281  1.00  0.00
ATOM    331  CB  LYS   109       7.394 -13.690  -0.886  1.00  0.00
ATOM    332  CG  LYS   109       7.856 -15.138  -0.870  1.00  0.00
ATOM    333  CD  LYS   109       7.881 -15.694   0.544  1.00  0.00
ATOM    334  CE  LYS   109       8.365 -17.135   0.562  1.00  0.00
ATOM    335  NZ  LYS   109       8.428 -17.683   1.946  1.00  0.00
ATOM    336  O   LYS   109       5.415 -11.675  -2.496  1.00  0.00
ATOM    337  C   LYS   109       6.600 -11.743  -2.185  1.00  0.00
ATOM    338  N   PHE   110       7.298 -10.688  -1.777  1.00  0.00
ATOM    339  CA  PHE   110       6.680  -9.372  -1.685  1.00  0.00
ATOM    340  CB  PHE   110       7.606  -8.395  -0.958  1.00  0.00
ATOM    341  CG  PHE   110       7.034  -7.016  -0.807  1.00  0.00
ATOM    342  CD1 PHE   110       6.077  -6.749   0.157  1.00  0.00
ATOM    343  CD2 PHE   110       7.451  -5.982  -1.628  1.00  0.00
ATOM    344  CE1 PHE   110       5.549  -5.479   0.297  1.00  0.00
ATOM    345  CE2 PHE   110       6.923  -4.713  -1.489  1.00  0.00
ATOM    346  CZ  PHE   110       5.977  -4.460  -0.532  1.00  0.00
ATOM    347  O   PHE   110       5.406  -8.192  -3.355  1.00  0.00
ATOM    348  C   PHE   110       6.412  -8.857  -3.099  1.00  0.00
ATOM    349  N   PHE   111       7.314  -9.185  -4.016  1.00  0.00
ATOM    350  CA  PHE   111       7.178  -8.757  -5.401  1.00  0.00
ATOM    351  CB  PHE   111       8.427  -9.131  -6.203  1.00  0.00
ATOM    352  CG  PHE   111       8.370  -8.707  -7.643  1.00  0.00
ATOM    353  CD1 PHE   111       8.596  -7.390  -8.001  1.00  0.00
ATOM    354  CD2 PHE   111       8.095  -9.625  -8.640  1.00  0.00
ATOM    355  CE1 PHE   111       8.545  -6.999  -9.325  1.00  0.00
ATOM    356  CE2 PHE   111       8.044  -9.236  -9.965  1.00  0.00
ATOM    357  CZ  PHE   111       8.268  -7.929 -10.310  1.00  0.00
ATOM    358  O   PHE   111       5.171  -8.786  -6.718  1.00  0.00
ATOM    359  C   PHE   111       5.966  -9.433  -6.040  1.00  0.00
ATOM    360  N   GLU   112       5.823 -10.735  -5.802  1.00  0.00
ATOM    361  CA  GLU   112       4.709 -11.478  -6.369  1.00  0.00
ATOM    362  CB  GLU   112       4.895 -12.979  -6.144  1.00  0.00
ATOM    363  CG  GLU   112       6.023 -13.593  -6.958  1.00  0.00
ATOM    364  CD  GLU   112       6.225 -15.065  -6.656  1.00  0.00
ATOM    365  OE1 GLU   112       5.510 -15.596  -5.781  1.00  0.00
ATOM    366  OE2 GLU   112       7.100 -15.688  -7.294  1.00  0.00
ATOM    367  O   GLU   112       2.325 -11.422  -6.375  1.00  0.00
ATOM    368  C   GLU   112       3.353 -11.121  -5.780  1.00  0.00
ATOM    369  N   ALA   113       3.334 -10.480  -4.616  1.00  0.00
ATOM    370  CA  ALA   113       2.059 -10.070  -4.042  1.00  0.00
ATOM    371  CB  ALA   113       2.202  -9.839  -2.546  1.00  0.00
ATOM    372  O   ALA   113       0.460  -8.597  -5.062  1.00  0.00
ATOM    373  C   ALA   113       1.621  -8.771  -4.723  1.00  0.00
ATOM    374  N   VAL   114       2.569  -7.872  -4.951  1.00  0.00
ATOM    375  CA  VAL   114       2.276  -6.583  -5.578  1.00  0.00
ATOM    376  CB  VAL   114       3.461  -5.609  -5.447  1.00  0.00
ATOM    377  CG1 VAL   114       3.208  -4.350  -6.264  1.00  0.00
ATOM    378  CG2 VAL   114       3.661  -5.206  -3.993  1.00  0.00
ATOM    379  O   VAL   114       1.066  -6.131  -7.595  1.00  0.00
ATOM    380  C   VAL   114       1.979  -6.745  -7.059  1.00  0.00
ATOM    381  N   LYS   115       2.770  -7.595  -7.703  1.00  0.00
ATOM    382  CA  LYS   115       2.660  -7.885  -9.119  1.00  0.00
ATOM    383  CB  LYS   115       3.449  -9.147  -9.469  1.00  0.00
ATOM    384  CG  LYS   115       3.417  -9.510 -10.946  1.00  0.00
ATOM    385  CD  LYS   115       4.280 -10.727 -11.235  1.00  0.00
ATOM    386  CE  LYS   115       4.221 -11.108 -12.705  1.00  0.00
ATOM    387  NZ  LYS   115       5.067 -12.297 -13.005  1.00  0.00
ATOM    388  O   LYS   115       0.791  -7.591 -10.587  1.00  0.00
ATOM    389  C   LYS   115       1.224  -8.112  -9.561  1.00  0.00
ATOM    390  N   THR   116       0.483  -8.889  -8.781  1.00  0.00
ATOM    391  CA  THR   116      -0.891  -9.179  -9.129  1.00  0.00
ATOM    392  CB  THR   116      -1.366 -10.502  -8.500  1.00  0.00
ATOM    393  CG2 THR   116      -0.616 -11.679  -9.104  1.00  0.00
ATOM    394  OG1 THR   116      -1.127 -10.474  -7.086  1.00  0.00
ATOM    395  O   THR   116      -3.120  -8.425  -8.831  1.00  0.00
ATOM    396  C   THR   116      -1.929  -8.159  -8.704  1.00  0.00
TER
END



