
PFRMAT TS
TARGET T0348
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0348 model 3 Tue Jun 27 13:30:46 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  3
PARENT N/A
ATOM      2  N   VAL    10      16.986   9.269  -1.685  1.00  0.00
ATOM      3  CA  VAL    10      17.502  10.023  -2.823  1.00  0.00
ATOM      4  CB  VAL    10      18.918  10.561  -2.548  1.00  0.00
ATOM      5  CG1 VAL    10      18.905  11.516  -1.364  1.00  0.00
ATOM      6  CG2 VAL    10      19.871   9.418  -2.233  1.00  0.00
ATOM      7  O   VAL    10      17.436   7.926  -3.989  1.00  0.00
ATOM      8  C   VAL    10      17.573   9.148  -4.068  1.00  0.00
ATOM      9  N   CYS    11      17.788   9.777  -5.218  1.00  0.00
ATOM     10  CA  CYS    11      17.876   9.057  -6.481  1.00  0.00
ATOM     11  CB  CYS    11      18.158  10.024  -7.632  1.00  0.00
ATOM     12  SG  CYS    11      16.845  11.230  -7.933  1.00  0.00
ATOM     13  O   CYS    11      19.718   7.913  -5.447  1.00  0.00
ATOM     14  C   CYS    11      19.000   8.024  -6.439  1.00  0.00
ATOM     15  N   PRO    12      19.145   7.271  -7.526  1.00  0.00
ATOM     16  CA  PRO    12      20.181   6.251  -7.615  1.00  0.00
ATOM     17  CB  PRO    12      19.441   5.014  -8.132  1.00  0.00
ATOM     18  CG  PRO    12      18.449   5.556  -9.107  1.00  0.00
ATOM     19  CD  PRO    12      17.981   6.867  -8.542  1.00  0.00
ATOM     20  O   PRO    12      22.293   5.977  -8.723  1.00  0.00
ATOM     21  C   PRO    12      21.291   6.676  -8.571  1.00  0.00
ATOM     22  N   LEU    13      21.104   7.824  -9.212  1.00  0.00
ATOM     23  CA  LEU    13      22.089   8.342 -10.154  1.00  0.00
ATOM     24  CB  LEU    13      21.492   8.432 -11.559  1.00  0.00
ATOM     25  CG  LEU    13      22.410   8.981 -12.653  1.00  0.00
ATOM     26  CD1 LEU    13      23.562   8.022 -12.919  1.00  0.00
ATOM     27  CD2 LEU    13      21.644   9.174 -13.952  1.00  0.00
ATOM     28  O   LEU    13      23.752   9.977  -9.580  1.00  0.00
ATOM     29  C   LEU    13      22.556   9.735  -9.745  1.00  0.00
ATOM     30  N   CYS    14      21.604  10.648  -9.583  1.00  0.00
ATOM     31  CA  CYS    14      21.916  12.018  -9.194  1.00  0.00
ATOM     32  CB  CYS    14      20.740  12.945  -9.505  1.00  0.00
ATOM     33  SG  CYS    14      20.417  13.174 -11.269  1.00  0.00
ATOM     34  O   CYS    14      23.012  12.928  -7.260  1.00  0.00
ATOM     35  C   CYS    14      22.209  12.105  -7.697  1.00  0.00
ATOM     36  N   LYS    15      21.551  11.251  -6.922  1.00  0.00
ATOM     37  CA  LYS    15      21.738  11.232  -5.476  1.00  0.00
ATOM     38  CB  LYS    15      23.170  10.824  -5.125  1.00  0.00
ATOM     39  CG  LYS    15      23.534   9.412  -5.549  1.00  0.00
ATOM     40  CD  LYS    15      24.962   9.068  -5.158  1.00  0.00
ATOM     41  CE  LYS    15      25.338   7.668  -5.612  1.00  0.00
ATOM     42  NZ  LYS    15      26.767   7.356  -5.331  1.00  0.00
ATOM     43  O   LYS    15      22.316  13.165  -4.171  1.00  0.00
ATOM     44  C   LYS    15      21.473  12.611  -4.876  1.00  0.00
ATOM     45  N   GLY    16      20.297  13.159  -5.163  1.00  0.00
ATOM     46  CA  GLY    16      19.921  14.472  -4.655  1.00  0.00
ATOM     47  O   GLY    16      21.014  15.238  -2.658  1.00  0.00
ATOM     48  C   GLY    16      20.120  14.547  -3.145  1.00  0.00
ATOM     49  N   PRO    17      19.275  13.833  -2.406  1.00  0.00
ATOM     50  CA  PRO    17      19.373  13.833  -0.959  1.00  0.00
ATOM     51  CB  PRO    17      20.729  14.484  -0.679  1.00  0.00
ATOM     52  CG  PRO    17      20.958  15.385  -1.847  1.00  0.00
ATOM     53  CD  PRO    17      20.360  14.687  -3.035  1.00  0.00
ATOM     54  O   PRO    17      18.403  15.801  -0.009  1.00  0.00
ATOM     55  C   PRO    17      18.252  14.615  -0.302  1.00  0.00
ATOM     56  N   LEU    18      17.125  13.950  -0.072  1.00  0.00
ATOM     57  CA  LEU    18      15.973  14.591   0.552  1.00  0.00
ATOM     58  CB  LEU    18      15.016  15.131  -0.514  1.00  0.00
ATOM     59  CG  LEU    18      13.727  15.775  -0.005  1.00  0.00
ATOM     60  CD1 LEU    18      14.028  17.073   0.730  1.00  0.00
ATOM     61  CD2 LEU    18      12.789  16.089  -1.161  1.00  0.00
ATOM     62  O   LEU    18      15.019  12.444   1.051  1.00  0.00
ATOM     63  C   LEU    18      15.206  13.603   1.425  1.00  0.00
ATOM     64  N   VAL    19      14.767  14.067   2.588  1.00  0.00
ATOM     65  CA  VAL    19      14.020  13.224   3.516  1.00  0.00
ATOM     66  CB  VAL    19      14.068  13.782   4.950  1.00  0.00
ATOM     67  CG1 VAL    19      13.208  12.938   5.880  1.00  0.00
ATOM     68  CG2 VAL    19      15.494  13.775   5.477  1.00  0.00
ATOM     69  O   VAL    19      11.922  14.129   2.777  1.00  0.00
ATOM     70  C   VAL    19      12.555  13.125   3.108  1.00  0.00
ATOM     71  N   PHE    20      12.019  11.910   3.138  1.00  0.00
ATOM     72  CA  PHE    20      10.626  11.679   2.771  1.00  0.00
ATOM     73  CB  PHE    20      10.536  10.687   1.611  1.00  0.00
ATOM     74  CG  PHE    20      11.201  11.164   0.350  1.00  0.00
ATOM     75  CD1 PHE    20      12.453  10.698  -0.008  1.00  0.00
ATOM     76  CD2 PHE    20      10.573  12.080  -0.476  1.00  0.00
ATOM     77  CE1 PHE    20      13.065  11.138  -1.167  1.00  0.00
ATOM     78  CE2 PHE    20      11.184  12.521  -1.634  1.00  0.00
ATOM     79  CZ  PHE    20      12.424  12.053  -1.980  1.00  0.00
ATOM     80  O   PHE    20       8.688  11.472   4.173  1.00  0.00
ATOM     81  C   PHE    20       9.841  11.108   3.949  1.00  0.00
ATOM     82  N   ASP    21      10.476  10.210   4.696  1.00  0.00
ATOM     83  CA  ASP    21       9.838   9.587   5.849  1.00  0.00
ATOM     84  CB  ASP    21      10.109  10.402   7.116  1.00  0.00
ATOM     85  CG  ASP    21       9.748   9.648   8.380  1.00  0.00
ATOM     86  OD1 ASP    21       9.464   8.436   8.290  1.00  0.00
ATOM     87  OD2 ASP    21       9.751  10.271   9.463  1.00  0.00
ATOM     88  O   ASP    21       7.553   9.782   6.567  1.00  0.00
ATOM     89  C   ASP    21       8.328   9.499   5.653  1.00  0.00
ATOM     90  N   LYS    22       7.915   9.103   4.452  1.00  0.00
ATOM     91  CA  LYS    22       6.497   8.979   4.134  1.00  0.00
ATOM     92  CB  LYS    22       6.196   9.616   2.776  1.00  0.00
ATOM     93  CG  LYS    22       6.431  11.117   2.728  1.00  0.00
ATOM     94  CD  LYS    22       6.066  11.690   1.369  1.00  0.00
ATOM     95  CE  LYS    22       6.259  13.197   1.334  1.00  0.00
ATOM     96  NZ  LYS    22       5.858  13.779   0.023  1.00  0.00
ATOM     97  O   LYS    22       6.921   6.623   3.950  1.00  0.00
ATOM     98  C   LYS    22       6.080   7.512   4.077  1.00  0.00
ATOM     99  N   SER    23       4.777   7.269   4.172  1.00  0.00
ATOM    100  CA  SER    23       4.249   5.910   4.133  1.00  0.00
ATOM    101  CB  SER    23       3.075   5.762   5.103  1.00  0.00
ATOM    102  OG  SER    23       3.500   5.918   6.446  1.00  0.00
ATOM    103  O   SER    23       2.652   5.045   2.562  1.00  0.00
ATOM    104  C   SER    23       3.758   5.558   2.732  1.00  0.00
ATOM    105  N   LYS    24       4.589   5.837   1.732  1.00  0.00
ATOM    106  CA  LYS    24       4.237   5.551   0.345  1.00  0.00
ATOM    107  CB  LYS    24       3.670   6.801  -0.332  1.00  0.00
ATOM    108  CG  LYS    24       2.395   7.327   0.306  1.00  0.00
ATOM    109  CD  LYS    24       1.890   8.568  -0.411  1.00  0.00
ATOM    110  CE  LYS    24       0.585   9.064   0.193  1.00  0.00
ATOM    111  NZ  LYS    24       0.002  10.187  -0.590  1.00  0.00
ATOM    112  O   LYS    24       6.588   5.156   0.051  1.00  0.00
ATOM    113  C   LYS    24       5.463   5.097  -0.442  1.00  0.00
ATOM    114  N   ASP    25       5.234   4.645  -1.670  1.00  0.00
ATOM    115  CA  ASP    25       6.318   4.178  -2.528  1.00  0.00
ATOM    116  CB  ASP    25       6.141   2.695  -2.860  1.00  0.00
ATOM    117  CG  ASP    25       4.847   2.414  -3.597  1.00  0.00
ATOM    118  OD1 ASP    25       4.041   3.355  -3.762  1.00  0.00
ATOM    119  OD2 ASP    25       4.637   1.255  -4.010  1.00  0.00
ATOM    120  O   ASP    25       6.838   4.466  -4.854  1.00  0.00
ATOM    121  C   ASP    25       6.350   4.960  -3.838  1.00  0.00
ATOM    122  N   GLU    26       5.827   6.181  -3.805  1.00  0.00
ATOM    123  CA  GLU    26       5.798   7.030  -4.990  1.00  0.00
ATOM    124  CB  GLU    26       4.357   7.411  -5.339  1.00  0.00
ATOM    125  CG  GLU    26       3.474   6.230  -5.706  1.00  0.00
ATOM    126  CD  GLU    26       2.026   6.629  -5.916  1.00  0.00
ATOM    127  OE1 GLU    26       1.708   7.823  -5.743  1.00  0.00
ATOM    128  OE2 GLU    26       1.210   5.745  -6.254  1.00  0.00
ATOM    129  O   GLU    26       6.035   9.413  -4.800  1.00  0.00
ATOM    130  C   GLU    26       6.589   8.314  -4.760  1.00  0.00
ATOM    131  N   LEU    27       7.888   8.167  -4.518  1.00  0.00
ATOM    132  CA  LEU    27       8.756   9.314  -4.282  1.00  0.00
ATOM    133  CB  LEU    27      10.035   8.879  -3.563  1.00  0.00
ATOM    134  CG  LEU    27       9.856   8.281  -2.165  1.00  0.00
ATOM    135  CD1 LEU    27      11.191   7.808  -1.609  1.00  0.00
ATOM    136  CD2 LEU    27       9.282   9.315  -1.208  1.00  0.00
ATOM    137  O   LEU    27       9.345   9.311  -6.611  1.00  0.00
ATOM    138  C   LEU    27       9.153   9.981  -5.595  1.00  0.00
ATOM    139  N   ILE    28       9.274  11.304  -5.569  1.00  0.00
ATOM    140  CA  ILE    28       9.647  12.061  -6.757  1.00  0.00
ATOM    141  CB  ILE    28       8.479  12.925  -7.265  1.00  0.00
ATOM    142  CG1 ILE    28       7.286  12.042  -7.642  1.00  0.00
ATOM    143  CG2 ILE    28       8.897  13.717  -8.494  1.00  0.00
ATOM    144  CD1 ILE    28       6.026  12.818  -7.953  1.00  0.00
ATOM    145  O   ILE    28      10.771  13.796  -5.536  1.00  0.00
ATOM    146  C   ILE    28      10.818  12.994  -6.470  1.00  0.00
ATOM    147  N   CYS    29      11.867  12.885  -7.277  1.00  0.00
ATOM    148  CA  CYS    29      13.051  13.719  -7.111  1.00  0.00
ATOM    149  CB  CYS    29      14.182  13.230  -8.017  1.00  0.00
ATOM    150  SG  CYS    29      15.709  14.189  -7.891  1.00  0.00
ATOM    151  O   CYS    29      12.124  15.469  -8.484  1.00  0.00
ATOM    152  C   CYS    29      12.748  15.171  -7.465  1.00  0.00
ATOM    153  N   LYS    30      13.202  16.097  -6.609  1.00  0.00
ATOM    154  CA  LYS    30      12.991  17.533  -6.812  1.00  0.00
ATOM    155  CB  LYS    30      13.403  18.317  -5.562  1.00  0.00
ATOM    156  CG  LYS    30      14.898  18.309  -5.289  1.00  0.00
ATOM    157  CD  LYS    30      15.234  19.097  -4.033  1.00  0.00
ATOM    158  CE  LYS    30      16.733  19.135  -3.791  1.00  0.00
ATOM    159  NZ  LYS    30      17.087  20.007  -2.638  1.00  0.00
ATOM    160  O   LYS    30      13.769  19.275  -8.268  1.00  0.00
ATOM    161  C   LYS    30      13.805  18.078  -7.981  1.00  0.00
ATOM    162  N   GLY    31      14.533  17.194  -8.653  1.00  0.00
ATOM    163  CA  GLY    31      15.354  17.587  -9.791  1.00  0.00
ATOM    164  O   GLY    31      14.559  17.367 -12.047  1.00  0.00
ATOM    165  C   GLY    31      14.972  16.795 -11.037  1.00  0.00
ATOM    166  N   ASP    32      15.113  15.476 -10.961  1.00  0.00
ATOM    167  CA  ASP    32      14.783  14.605 -12.083  1.00  0.00
ATOM    168  CB  ASP    32      15.367  13.207 -11.864  1.00  0.00
ATOM    169  CG  ASP    32      16.872  13.169 -12.047  1.00  0.00
ATOM    170  OD1 ASP    32      17.431  14.154 -12.576  1.00  0.00
ATOM    171  OD2 ASP    32      17.492  12.156 -11.662  1.00  0.00
ATOM    172  O   ASP    32      12.768  14.279 -13.348  1.00  0.00
ATOM    173  C   ASP    32      13.273  14.470 -12.241  1.00  0.00
ATOM    174  N   ARG    33      12.553  14.574 -11.127  1.00  0.00
ATOM    175  CA  ARG    33      11.099  14.467 -11.144  1.00  0.00
ATOM    176  CB  ARG    33      10.492  15.540 -12.050  1.00  0.00
ATOM    177  CG  ARG    33      10.788  16.964 -11.607  1.00  0.00
ATOM    178  CD  ARG    33      10.221  17.976 -12.589  1.00  0.00
ATOM    179  NE  ARG    33      10.667  19.336 -12.294  1.00  0.00
ATOM    180  CZ  ARG    33      10.358  20.399 -13.027  1.00  0.00
ATOM    181  NH1 ARG    33      10.809  21.598 -12.680  1.00  0.00
ATOM    182  NH2 ARG    33       9.598  20.263 -14.105  1.00  0.00
ATOM    183  O   ARG    33       9.633  12.981 -12.330  1.00  0.00
ATOM    184  C   ARG    33      10.661  13.100 -11.664  1.00  0.00
ATOM    185  N   LEU    34      11.449  12.075 -11.357  1.00  0.00
ATOM    186  CA  LEU    34      11.143  10.720 -11.796  1.00  0.00
ATOM    187  CB  LEU    34      12.378  10.066 -12.417  1.00  0.00
ATOM    188  CG  LEU    34      12.970  10.762 -13.645  1.00  0.00
ATOM    189  CD1 LEU    34      14.237  10.057 -14.105  1.00  0.00
ATOM    190  CD2 LEU    34      11.976  10.752 -14.797  1.00  0.00
ATOM    191  O   LEU    34      11.346   9.802  -9.584  1.00  0.00
ATOM    192  C   LEU    34      10.687   9.857 -10.623  1.00  0.00
ATOM    193  N   ALA    35       9.552   9.186 -10.794  1.00  0.00
ATOM    194  CA  ALA    35       9.007   8.328  -9.750  1.00  0.00
ATOM    195  CB  ALA    35       7.571   7.946 -10.074  1.00  0.00
ATOM    196  O   ALA    35       9.874   6.231 -10.532  1.00  0.00
ATOM    197  C   ALA    35       9.819   7.046  -9.611  1.00  0.00
ATOM    198  N   PHE    36      10.448   6.873  -8.453  1.00  0.00
ATOM    199  CA  PHE    36      11.259   5.688  -8.194  1.00  0.00
ATOM    200  CB  PHE    36      12.747   6.021  -8.315  1.00  0.00
ATOM    201  CG  PHE    36      13.221   7.047  -7.325  1.00  0.00
ATOM    202  CD1 PHE    36      13.734   6.660  -6.099  1.00  0.00
ATOM    203  CD2 PHE    36      13.154   8.397  -7.620  1.00  0.00
ATOM    204  CE1 PHE    36      14.170   7.604  -5.188  1.00  0.00
ATOM    205  CE2 PHE    36      13.590   9.341  -6.709  1.00  0.00
ATOM    206  CZ  PHE    36      14.096   8.949  -5.498  1.00  0.00
ATOM    207  O   PHE    36      10.840   5.916  -5.839  1.00  0.00
ATOM    208  C   PHE    36      11.001   5.151  -6.790  1.00  0.00
ATOM    209  N   PRO    37      10.963   3.828  -6.667  1.00  0.00
ATOM    210  CA  PRO    37      10.724   3.185  -5.381  1.00  0.00
ATOM    211  CB  PRO    37      10.880   1.692  -5.679  1.00  0.00
ATOM    212  CG  PRO    37      10.610   1.572  -7.141  1.00  0.00
ATOM    213  CD  PRO    37      11.174   2.814  -7.773  1.00  0.00
ATOM    214  O   PRO    37      12.889   3.939  -4.664  1.00  0.00
ATOM    215  C   PRO    37      11.735   3.658  -4.341  1.00  0.00
ATOM    216  N   ILE    38      11.293   3.740  -3.090  1.00  0.00
ATOM    217  CA  ILE    38      12.158   4.176  -2.000  1.00  0.00
ATOM    218  CB  ILE    38      11.356   4.870  -0.884  1.00  0.00
ATOM    219  CG1 ILE    38      10.392   3.879  -0.226  1.00  0.00
ATOM    220  CG2 ILE    38      10.545   6.026  -1.450  1.00  0.00
ATOM    221  CD1 ILE    38       9.714   4.419   1.014  1.00  0.00
ATOM    222  O   ILE    38      13.725   3.170  -0.484  1.00  0.00
ATOM    223  C   ILE    38      12.891   2.995  -1.375  1.00  0.00
ATOM    224  N   LYS    39      12.576   1.793  -1.844  1.00  0.00
ATOM    225  CA  LYS    39      13.204   0.582  -1.330  1.00  0.00
ATOM    226  CB  LYS    39      12.156  -0.506  -1.095  1.00  0.00
ATOM    227  CG  LYS    39      11.171  -0.190   0.018  1.00  0.00
ATOM    228  CD  LYS    39      10.217  -1.350   0.259  1.00  0.00
ATOM    229  CE  LYS    39       9.235  -1.034   1.373  1.00  0.00
ATOM    230  NZ  LYS    39       8.310  -2.171   1.637  1.00  0.00
ATOM    231  O   LYS    39      15.443   0.132  -2.077  1.00  0.00
ATOM    232  C   LYS    39      14.238   0.045  -2.315  1.00  0.00
ATOM    233  N   ASP    40      13.758  -0.512  -3.422  1.00  0.00
ATOM    234  CA  ASP    40      14.640  -1.065  -4.444  1.00  0.00
ATOM    235  CB  ASP    40      13.846  -1.934  -5.422  1.00  0.00
ATOM    236  CG  ASP    40      12.805  -1.142  -6.191  1.00  0.00
ATOM    237  OD1 ASP    40      12.727   0.088  -5.992  1.00  0.00
ATOM    238  OD2 ASP    40      12.070  -1.755  -6.995  1.00  0.00
ATOM    239  O   ASP    40      16.268  -0.195  -5.981  1.00  0.00
ATOM    240  C   ASP    40      15.318   0.049  -5.237  1.00  0.00
ATOM    241  N   PRO    43      14.824   1.271  -5.071  1.00  0.00
ATOM    242  CA  PRO    43      15.383   2.423  -5.770  1.00  0.00
ATOM    243  CB  PRO    43      16.798   2.548  -5.202  1.00  0.00
ATOM    244  CG  PRO    43      17.171   1.156  -4.815  1.00  0.00
ATOM    245  CD  PRO    43      15.904   0.503  -4.338  1.00  0.00
ATOM    246  O   PRO    43      16.382   2.506  -7.951  1.00  0.00
ATOM    247  C   PRO    43      15.402   2.190  -7.277  1.00  0.00
ATOM    248  N   MET    44      14.312   1.636  -7.798  1.00  0.00
ATOM    249  CA  MET    44      14.204   1.362  -9.226  1.00  0.00
ATOM    250  CB  MET    44      14.021  -0.137  -9.470  1.00  0.00
ATOM    251  CG  MET    44      15.198  -0.987  -9.018  1.00  0.00
ATOM    252  SD  MET    44      14.934  -2.749  -9.303  1.00  0.00
ATOM    253  CE  MET    44      15.194  -2.848 -11.073  1.00  0.00
ATOM    254  O   MET    44      12.120   2.549  -9.113  1.00  0.00
ATOM    255  C   MET    44      13.008   2.092  -9.831  1.00  0.00
ATOM    256  N   MET    45      12.996   2.199 -11.156  1.00  0.00
ATOM    257  CA  MET    45      11.911   2.877 -11.856  1.00  0.00
ATOM    258  CB  MET    45      12.060   2.703 -13.369  1.00  0.00
ATOM    259  CG  MET    45      13.326   3.318 -13.942  1.00  0.00
ATOM    260  SD  MET    45      13.440   5.091 -13.637  1.00  0.00
ATOM    261  CE  MET    45      12.287   5.719 -14.855  1.00  0.00
ATOM    262  O   MET    45      10.209   1.184 -11.805  1.00  0.00
ATOM    263  C   MET    45      10.557   2.308 -11.443  1.00  0.00
ATOM    264  N   LEU    46       9.799   3.091 -10.683  1.00  0.00
ATOM    265  CA  LEU    46       8.484   2.665 -10.221  1.00  0.00
ATOM    266  CB  LEU    46       7.729   3.841  -9.598  1.00  0.00
ATOM    267  CG  LEU    46       8.280   4.376  -8.276  1.00  0.00
ATOM    268  CD1 LEU    46       7.524   5.623  -7.843  1.00  0.00
ATOM    269  CD2 LEU    46       8.150   3.335  -7.177  1.00  0.00
ATOM    270  O   LEU    46       7.948   2.377 -12.542  1.00  0.00
ATOM    271  C   LEU    46       7.651   2.121 -11.375  1.00  0.00
ATOM    272  N   GLU    47       6.605   1.370 -11.044  1.00  0.00
ATOM    273  CA  GLU    47       5.729   0.790 -12.056  1.00  0.00
ATOM    274  CB  GLU    47       6.297  -0.538 -12.559  1.00  0.00
ATOM    275  CG  GLU    47       5.487  -1.177 -13.674  1.00  0.00
ATOM    276  CD  GLU    47       6.106  -2.466 -14.179  1.00  0.00
ATOM    277  OE1 GLU    47       7.190  -2.838 -13.684  1.00  0.00
ATOM    278  OE2 GLU    47       5.507  -3.102 -15.072  1.00  0.00
ATOM    279  O   GLU    47       4.198   0.051 -10.360  1.00  0.00
ATOM    280  C   GLU    47       4.339   0.527 -11.485  1.00  0.00
ATOM    281  N   SER    48       3.314   0.843 -12.272  1.00  0.00
ATOM    282  CA  SER    48       1.933   0.641 -11.845  1.00  0.00
ATOM    283  CB  SER    48       0.981   0.768 -13.035  1.00  0.00
ATOM    284  OG  SER    48       0.985   2.089 -13.553  1.00  0.00
ATOM    285  O   SER    48       1.017  -0.911 -10.258  1.00  0.00
ATOM    286  C   SER    48       1.750  -0.745 -11.233  1.00  0.00
ATOM    287  N   GLU    49       2.420  -1.735 -11.813  1.00  0.00
ATOM    288  CA  GLU    49       2.329  -3.106 -11.326  1.00  0.00
ATOM    289  CB  GLU    49       3.091  -4.056 -12.250  1.00  0.00
ATOM    290  CG  GLU    49       2.441  -4.253 -13.611  1.00  0.00
ATOM    291  CD  GLU    49       3.269  -5.126 -14.533  1.00  0.00
ATOM    292  OE1 GLU    49       4.383  -5.525 -14.130  1.00  0.00
ATOM    293  OE2 GLU    49       2.806  -5.412 -15.655  1.00  0.00
ATOM    294  O   GLU    49       2.442  -4.006  -9.101  1.00  0.00
ATOM    295  C   GLU    49       2.922  -3.226  -9.925  1.00  0.00
ATOM    296  N   ALA    50       3.968  -2.451  -9.662  1.00  0.00
ATOM    297  CA  ALA    50       4.627  -2.470  -8.361  1.00  0.00
ATOM    298  CB  ALA    50       5.819  -1.525  -8.355  1.00  0.00
ATOM    299  O   ALA    50       3.728  -2.534  -6.135  1.00  0.00
ATOM    300  C   ALA    50       3.665  -2.034  -7.259  1.00  0.00
ATOM    301  N   ARG    51       2.778  -1.102  -7.589  1.00  0.00
ATOM    302  CA  ARG    51       1.806  -0.598  -6.626  1.00  0.00
ATOM    303  CB  ARG    51       0.770   0.286  -7.322  1.00  0.00
ATOM    304  CG  ARG    51      -0.189   0.985  -6.372  1.00  0.00
ATOM    305  CD  ARG    51      -1.161   1.877  -7.128  1.00  0.00
ATOM    306  NE  ARG    51      -0.479   2.962  -7.829  1.00  0.00
ATOM    307  CZ  ARG    51      -0.111   4.105  -7.259  1.00  0.00
ATOM    308  NH1 ARG    51       0.506   5.035  -7.976  1.00  0.00
ATOM    309  NH2 ARG    51      -0.361   4.315  -5.975  1.00  0.00
ATOM    310  O   ARG    51       0.454  -2.583  -6.604  1.00  0.00
ATOM    311  C   ARG    51       1.071  -1.748  -5.944  1.00  0.00
ATOM    312  N   GLU    52       1.141  -1.784  -4.616  1.00  0.00
ATOM    313  CA  GLU    52       0.480  -2.835  -3.867  1.00  0.00
ATOM    314  CB  GLU    52      -0.717  -3.379  -4.649  1.00  0.00
ATOM    315  CG  GLU    52      -1.850  -2.379  -4.826  1.00  0.00
ATOM    316  CD  GLU    52      -2.992  -2.934  -5.654  1.00  0.00
ATOM    317  OE1 GLU    52      -2.883  -4.088  -6.118  1.00  0.00
ATOM    318  OE2 GLU    52      -3.995  -2.212  -5.840  1.00  0.00
ATOM    319  O   GLU    52       1.257  -4.672  -2.547  1.00  0.00
ATOM    320  C   GLU    52       1.398  -4.005  -3.573  1.00  0.00
ATOM    321  N   LEU    53       2.341  -4.256  -4.475  1.00  0.00
ATOM    322  CA  LEU    53       3.285  -5.355  -4.309  1.00  0.00
ATOM    323  CB  LEU    53       3.580  -6.018  -5.657  1.00  0.00
ATOM    324  CG  LEU    53       2.376  -6.585  -6.410  1.00  0.00
ATOM    325  CD1 LEU    53       2.805  -7.157  -7.754  1.00  0.00
ATOM    326  CD2 LEU    53       1.715  -7.696  -5.610  1.00  0.00
ATOM    327  O   LEU    53       4.761  -3.667  -3.450  1.00  0.00
ATOM    328  C   LEU    53       4.603  -4.857  -3.723  1.00  0.00
ATOM    329  N   ALA    54       5.544  -5.774  -3.532  1.00  0.00
ATOM    330  CA  ALA    54       6.847  -5.429  -2.975  1.00  0.00
ATOM    331  CB  ALA    54       7.177  -6.336  -1.799  1.00  0.00
ATOM    332  O   ALA    54       7.714  -6.126  -5.106  1.00  0.00
ATOM    333  C   ALA    54       7.945  -5.587  -4.023  1.00  0.00
ATOM    334  N   PRO    55       9.141  -5.112  -3.693  1.00  0.00
ATOM    335  CA  PRO    55      10.277  -5.197  -4.603  1.00  0.00
ATOM    336  CB  PRO    55      11.454  -4.679  -3.775  1.00  0.00
ATOM    337  CG  PRO    55      10.838  -3.738  -2.796  1.00  0.00
ATOM    338  CD  PRO    55       9.529  -4.355  -2.393  1.00  0.00
ATOM    339  O   PRO    55      10.904  -6.882  -6.196  1.00  0.00
ATOM    340  C   PRO    55      10.500  -6.636  -5.059  1.00  0.00
ATOM    341  N   GLU    56      10.234  -7.583  -4.164  1.00  0.00
ATOM    342  CA  GLU    56      10.407  -8.997  -4.475  1.00  0.00
ATOM    343  CB  GLU    56      10.293  -9.843  -3.206  1.00  0.00
ATOM    344  CG  GLU    56      11.437  -9.647  -2.223  1.00  0.00
ATOM    345  CD  GLU    56      11.289 -10.500  -0.979  1.00  0.00
ATOM    346  OE1 GLU    56      10.317 -11.281  -0.906  1.00  0.00
ATOM    347  OE2 GLU    56      12.144 -10.386  -0.075  1.00  0.00
ATOM    348  O   GLU    56       9.657  -9.853  -6.590  1.00  0.00
ATOM    349  C   GLU    56       9.345  -9.473  -5.462  1.00  0.00
ATOM    350  N   GLU    57       8.089  -9.446  -5.027  1.00  0.00
ATOM    351  CA  GLU    57       6.980  -9.873  -5.872  1.00  0.00
ATOM    352  CB  GLU    57       5.643  -9.564  -5.197  1.00  0.00
ATOM    353  CG  GLU    57       5.323 -10.462  -4.013  1.00  0.00
ATOM    354  CD  GLU    57       4.030 -10.078  -3.322  1.00  0.00
ATOM    355  OE1 GLU    57       3.424  -9.061  -3.719  1.00  0.00
ATOM    356  OE2 GLU    57       3.622 -10.794  -2.383  1.00  0.00
ATOM    357  O   GLU    57       6.821  -9.768  -8.266  1.00  0.00
ATOM    358  C   GLU    57       7.013  -9.153  -7.217  1.00  0.00
ATOM    359  N   GLU    58       7.255  -7.847  -7.177  1.00  0.00
ATOM    360  CA  GLU    58       7.311  -7.044  -8.393  1.00  0.00
ATOM    361  CB  GLU    58       7.761  -5.618  -8.072  1.00  0.00
ATOM    362  CG  GLU    58       7.821  -4.698  -9.282  1.00  0.00
ATOM    363  CD  GLU    58       8.232  -3.284  -8.919  1.00  0.00
ATOM    364  OE1 GLU    58       8.434  -3.015  -7.717  1.00  0.00
ATOM    365  OE2 GLU    58       8.349  -2.446  -9.838  1.00  0.00
ATOM    366  O   GLU    58       7.940  -7.910 -10.542  1.00  0.00
ATOM    367  C   GLU    58       8.294  -7.640  -9.396  1.00  0.00
ATOM    368  N   VAL    59       9.531  -7.844  -8.952  1.00  0.00
ATOM    369  CA  VAL    59      10.566  -8.407  -9.811  1.00  0.00
ATOM    370  CB  VAL    59      11.810  -8.814  -9.001  1.00  0.00
ATOM    371  CG1 VAL    59      12.786  -9.587  -9.875  1.00  0.00
ATOM    372  CG2 VAL    59      12.521  -7.582  -8.461  1.00  0.00
ATOM    373  O   VAL    59      10.171  -9.760 -11.754  1.00  0.00
ATOM    374  C   VAL    59      10.056  -9.649 -10.534  1.00  0.00
ATOM    375  N   LYS    60       9.493 -10.583  -9.773  1.00  0.00
ATOM    376  CA  LYS    60       8.967 -11.818 -10.342  1.00  0.00
ATOM    377  CB  LYS    60       8.227 -12.627  -9.276  1.00  0.00
ATOM    378  CG  LYS    60       9.136 -13.243  -8.224  1.00  0.00
ATOM    379  CD  LYS    60       8.337 -14.036  -7.202  1.00  0.00
ATOM    380  CE  LYS    60       9.240 -14.617  -6.127  1.00  0.00
ATOM    381  NZ  LYS    60       8.472 -15.393  -5.114  1.00  0.00
ATOM    382  O   LYS    60       7.912 -12.269 -12.452  1.00  0.00
ATOM    383  C   LYS    60       7.992 -11.522 -11.478  1.00  0.00
ATOM    384  N   LEU    61       7.252 -10.427 -11.343  1.00  0.00
ATOM    385  CA  LEU    61       6.282 -10.032 -12.357  1.00  0.00
ATOM    386  CB  LEU    61       5.381  -8.913 -11.830  1.00  0.00
ATOM    387  CG  LEU    61       4.223  -8.490 -12.736  1.00  0.00
ATOM    388  CD1 LEU    61       3.291  -9.661 -13.000  1.00  0.00
ATOM    389  CD2 LEU    61       3.414  -7.375 -12.091  1.00  0.00
ATOM    390  O   LEU    61       6.469  -9.672 -14.723  1.00  0.00
ATOM    391  C   LEU    61       6.981  -9.527 -13.613  1.00  0.00
ATOM    392  N   GLU    62       8.155  -8.931 -13.432  1.00  0.00
ATOM    393  CA  GLU    62       8.928  -8.405 -14.550  1.00  0.00
ATOM    394  CB  GLU    62      10.087  -7.546 -14.043  1.00  0.00
ATOM    395  CG  GLU    62       9.658  -6.228 -13.421  1.00  0.00
ATOM    396  CD  GLU    62      10.817  -5.470 -12.804  1.00  0.00
ATOM    397  OE1 GLU    62      11.944  -6.007 -12.800  1.00  0.00
ATOM    398  OE2 GLU    62      10.598  -4.338 -12.323  1.00  0.00
ATOM    399  O   GLU    62       9.434  -9.508 -16.622  1.00  0.00
ATOM    400  C   GLU    62       9.506  -9.538 -15.393  1.00  0.00
ATOM    401  N   HIS    63      10.076 -10.534 -14.726  1.00  0.00
ATOM    402  CA  HIS    63      10.666 -11.677 -15.414  1.00  0.00
ATOM    403  CB  HIS    63      11.374 -12.595 -14.416  1.00  0.00
ATOM    404  CG  HIS    63      12.622 -12.009 -13.833  1.00  0.00
ATOM    405  CD2 HIS    63      13.055 -11.597 -12.507  1.00  0.00
ATOM    406  ND1 HIS    63      13.734 -11.723 -14.595  1.00  0.00
ATOM    407  CE1 HIS    63      14.689 -11.209 -13.798  1.00  0.00
ATOM    408  NE2 HIS    63      14.288 -11.130 -12.545  1.00  0.00
ATOM    409  O   HIS    63       9.847 -13.072 -17.189  1.00  0.00
ATOM    410  C   HIS    63       9.594 -12.489 -16.134  1.00  0.00
ATOM    411  N   HIS    64       8.395 -12.522 -15.561  1.00  0.00
ATOM    412  CA  HIS    64       7.286 -13.262 -16.149  1.00  0.00
ATOM    413  CB  HIS    64       6.217 -13.554 -15.093  1.00  0.00
ATOM    414  CG  HIS    64       5.041 -14.318 -15.619  1.00  0.00
ATOM    415  CD2 HIS    64       3.647 -14.012 -15.901  1.00  0.00
ATOM    416  ND1 HIS    64       5.117 -15.647 -15.975  1.00  0.00
ATOM    417  CE1 HIS    64       3.910 -16.053 -16.407  1.00  0.00
ATOM    418  NE2 HIS    64       3.023 -15.077 -16.366  1.00  0.00
ATOM    419  O   HIS    64       6.466 -12.966 -18.385  1.00  0.00
ATOM    420  C   HIS    64       6.638 -12.463 -17.276  1.00  0.00
ATOM    421  N   HIS    65       6.281 -11.217 -16.983  1.00  0.00
ATOM    422  CA  HIS    65       5.651 -10.351 -17.972  1.00  0.00
ATOM    423  CB  HIS    65       5.059  -9.112 -17.298  1.00  0.00
ATOM    424  CG  HIS    65       4.453  -8.134 -18.258  1.00  0.00
ATOM    425  CD2 HIS    65       4.839  -6.841 -18.803  1.00  0.00
ATOM    426  ND1 HIS    65       3.237  -8.346 -18.870  1.00  0.00
ATOM    427  CE1 HIS    65       2.961  -7.301 -19.669  1.00  0.00
ATOM    428  NE2 HIS    65       3.918  -6.395 -19.635  1.00  0.00
ATOM    429  O   HIS    65       6.510 -10.154 -20.207  1.00  0.00
ATOM    430  C   HIS    65       6.665  -9.889 -19.015  1.00  0.00
ATOM    431  N   HIS    66       7.702  -9.194 -18.557  1.00  0.00
ATOM    432  CA  HIS    66       8.738  -8.693 -19.450  1.00  0.00
ATOM    433  CB  HIS    66       9.494  -7.534 -18.797  1.00  0.00
ATOM    434  CG  HIS    66       8.645  -6.328 -18.539  1.00  0.00
ATOM    435  CD2 HIS    66       8.112  -5.666 -17.356  1.00  0.00
ATOM    436  ND1 HIS    66       8.159  -5.529 -19.551  1.00  0.00
ATOM    437  CE1 HIS    66       7.435  -4.532 -19.013  1.00  0.00
ATOM    438  NE2 HIS    66       7.403  -4.608 -17.697  1.00  0.00
ATOM    439  O   HIS    66      10.952  -9.553 -19.812  1.00  0.00
ATOM    440  C   HIS    66       9.745  -9.789 -19.786  1.00  0.00
ATOM    441  N   HIS    67       9.237 -10.992 -20.040  1.00  0.00
ATOM    442  CA  HIS    67      10.104 -12.107 -20.370  1.00  0.00
ATOM    443  CB  HIS    67      10.686 -11.937 -21.774  1.00  0.00
ATOM    444  CG  HIS    67       9.653 -11.910 -22.858  1.00  0.00
ATOM    445  CD2 HIS    67       9.088 -10.889 -23.728  1.00  0.00
ATOM    446  ND1 HIS    67       8.965 -13.035 -23.260  1.00  0.00
ATOM    447  CE1 HIS    67       8.111 -12.698 -24.242  1.00  0.00
ATOM    448  NE2 HIS    67       8.179 -11.412 -24.528  1.00  0.00
ATOM    449  O   HIS    67      11.370 -11.518 -18.418  1.00  0.00
ATOM    450  C   HIS    67      11.269 -12.240 -19.410  1.00  0.00
ATOM    451  N   HIS    68      12.179 -13.182 -19.703  1.00  0.00
ATOM    452  CA  HIS    68      13.359 -13.429 -18.871  1.00  0.00
ATOM    453  CB  HIS    68      14.072 -14.707 -19.315  1.00  0.00
ATOM    454  CG  HIS    68      13.241 -15.945 -19.169  1.00  0.00
ATOM    455  CD2 HIS    68      12.637 -16.903 -20.082  1.00  0.00
ATOM    456  ND1 HIS    68      12.862 -16.445 -17.942  1.00  0.00
ATOM    457  CE1 HIS    68      12.128 -17.555 -18.131  1.00  0.00
ATOM    458  NE2 HIS    68      11.989 -17.837 -19.412  1.00  0.00
ATOM    459  O   HIS    68      15.262 -12.182 -18.105  1.00  0.00
ATOM    460  C   HIS    68      14.371 -12.291 -18.947  1.00  0.00
TER
END



