
PFRMAT TS
TARGET T0348
AUTHOR Huber-Torda-server
REMARK This is a multi-part message in MIME format.
REMARK 
REMARK --LQKXL1E3KR-=-1UKHB7I33C-CUT-HERE-13G78646GQ-=-ZYYVVYQZ19
REMARK Content-Type: text/plain; charset=us-ascii
REMARK Content-Transfer-Encoding: 7bit
REMARK Content-Disposition: inline
REMARK 
REMARK Title: "T0348"
REMARK Results sent to "servers@predictioncenter.org"
REMARK Library from pdb90.list with 12303 template structures.
REMARK Brief results printed for 50 templates.
REMARK Long alignments printed for 10 templates.
REMARK Models made for the best 10 models.
REMARK Models will be sent as 10 attachments per file
REMARK Sequence length 68 is
REMARK MDAKFLEILV CPLCKGPLVF DKSKDELICK GDRLAFPIKD GIPMMLESEA RELAPEEEVK
REMARK LEHHHHHH
REMARK  
REMARK 
REMARK sw refers to Smith and Waterman alignment, nw refers to Needleman & Wunsch
REMARK z scr : the z-score of the alignment with 1000 alternative alignments
REMARK sw scr: the combined results of score function + gaps for sw alignment
REMARK sw cvr: coverage (fraction of sequence) accounted for by sw alignment
REMARK nw cvr: coverage                        accounted for by nw alignment
REMARK sw1   : score of sw alignment in first score function
REMARK sw2   : score of sw alignment in second score function
REMARK ____________ Summary of best templates   _________________________________
REMARK   struct    z scr   sw scr sw cvr nw cvr      sw1      sw2
REMARK    1vlvA  1.4e+03     40.2   0.07  0.074       39       11
REMARK    2amlA  8.1e+02     39.8   0.07  0.074       39      5.1
REMARK    1zkoA  5.3e+02     40.0   0.07  0.074       39      7.6
REMARK    1im4A  5.1e+02     39.5   0.07  0.074       39        1
REMARK    2afbA  4.5e+02     40.0   0.07  0.074       40      7.5
REMARK    1vljA  1.9e+02     24.4   0.07  0.074       24      6.1
REMARK    1vmfA       40     24.0   0.07  0.074       24      4.1
REMARK    1ltkA       34     24.1   0.07  0.074       24      4.3
REMARK    1zx8A       33     24.2   0.07  0.074       24      2.9
REMARK    2b8kB       16     51.0   0.74   0.84       34    4e+02
REMARK    1zxtA       15     48.8   0.71   0.71       44  3.3e+02
REMARK    1gh9A       15     46.0   0.81   0.82       26  4.1e+02
REMARK    1g8jB       15     44.8   0.90   0.96       29  3.1e+02
REMARK    2fi0A       15     32.2   0.75   0.78       27  2.7e+02
REMARK    1p91A       15     46.2   0.66   0.66       35  3.5e+02
REMARK    1qxfA       15     46.0   0.82   0.82       36  3.7e+02
REMARK    1t4hA       14     39.3   0.74   0.85       31  2.4e+02
REMARK    1aisA       14     42.4   0.85   0.85       41  3.2e+02
REMARK    1z47A       14     43.4   0.91   0.91       31  3.8e+02
REMARK    1yhfA       14     35.9   0.65   0.82       29  2.7e+02
REMARK    1v70A       14     35.5   0.71   0.78       28  2.5e+02
REMARK    1q90C       14     35.8   0.76   0.88       24  3.2e+02
REMARK    1vzgA       14     42.5   0.82   0.82       31  3.1e+02
REMARK    1rfs_       14     41.7   0.85   0.88       27  3.6e+02
REMARK    1yq2A       14     40.0   0.84   0.85       31  3.3e+02
REMARK    2cviA       14     85.1   0.94   0.94       77  3.3e+02
REMARK    1irxA       14     39.3   0.88   0.93       29  2.6e+02
REMARK    1yj5C       14     38.6   0.82   0.93       26  2.8e+02
REMARK    1vs1A       14     36.3   0.94   0.94       39  2.3e+02
REMARK    1ujxA       14     40.3   0.82   0.94       27    3e+02
REMARK    1hxhA       14     40.1   0.72   0.81       25  4.7e+02
REMARK    1vb7A       14     39.4   0.87      1       29  3.6e+02
REMARK    1azpA       14     39.1   0.91   0.91       30  2.6e+02
REMARK    1r4iA       14     38.4   0.84   0.88       25    4e+02
REMARK    1stfI       14     35.2   0.65   0.76       23  2.8e+02
REMARK    1z45A       14     40.3   0.76   0.76       30    3e+02
REMARK    2ex5A       13     37.6   0.91   0.96       30  3.2e+02
REMARK    1htjF       13     38.1   0.87   0.87       28  3.1e+02
REMARK    1z2qA       13     36.9   0.85    0.9       32  2.8e+02
REMARK    1dfx_       13     42.6   0.82   0.82       33  2.8e+02
REMARK    1ckmA       13     36.0   0.99   0.99       29  2.2e+02
REMARK    1avqA       13     35.4   0.93   0.96       32  2.4e+02
REMARK    1jfxA       13     30.4   0.88   0.88       25    3e+02
REMARK    1oy1A       13     44.3   0.81   0.81       49  2.4e+02
REMARK    2d8tA       13     34.7   0.76   0.85       22  3.5e+02
REMARK    1vfyA       13     35.6   0.81   0.82       33  3.3e+02
REMARK    1ds6B       13     42.2   0.74   0.79       34  2.9e+02
REMARK    1i6oA       13     38.9   0.82    0.9       29    3e+02
REMARK    2axoA       13     41.2   0.68   0.68       41  1.9e+02
REMARK    1mzhA       13     56.7   0.78   0.78       57    2e+02
REMARK 
REMARK ____________ Summary of coverage of query sequence _______________________
REMARK S & W coverage with 1vlvA
REMARK ---------------------------------------------------------------XXXXX
REMARK S & W coverage with 2amlA
REMARK ---------------------------------------------------------------XXXXX
REMARK S & W coverage with 1zkoA
REMARK ---------------------------------------------------------------XXXXX
REMARK S & W coverage with 1im4A
REMARK ---------------------------------------------------------------XXXXX
REMARK S & W coverage with 2afbA
REMARK ---------------------------------------------------------------XXXXX
REMARK S & W coverage with 1vljA
REMARK ---------------------------------------------------------------XXXXX
REMARK S & W coverage with 1vmfA
REMARK ---------------------------------------------------------------XXXXX
REMARK S & W coverage with 1ltkA
REMARK ---------------------------------------------------------------XXXXX
REMARK S & W coverage with 1zx8A
REMARK ---------------------------------------------------------------XXXXX
REMARK S & W coverage with 2b8kB
REMARK ----XXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXX-XXX-----XXXXXXXXXXXXX----
REMARK S & W coverage with 1zxtA
REMARK XXXXXXXXXXXXXXXXXXX--------------X-XXXXXXXXXXXXXXXXXXX--XXXXXXXXX---
REMARK S & W coverage with 1gh9A
REMARK ----XXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXX-
REMARK S & W coverage with 1g8jB
REMARK ----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXX
REMARK S & W coverage with 2fi0A
REMARK XXXXXXXXXXXXXXXXXXXX-----XXXX----XXXXXXXX------XXXXXXXXXXXXXXXXXXX--
REMARK S & W coverage with 1p91A
REMARK -------XXXXXXXXXXXXXXX--XXXXXXXXXXXX-XXXXXXXXX------------X-XXXXXXXX
REMARK S & W coverage with 1qxfA
REMARK XXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXX-X-XX--XX------
REMARK S & W coverage with 1t4hA
REMARK -------XXXXXX-----XXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--
REMARK S & W coverage with 1aisA
REMARK XXXXXXX-----XXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXX
REMARK S & W coverage with 1z47A
REMARK XXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--
REMARK S & W coverage with 1yhfA
REMARK --------XXX-XXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXX------X-XXXXXXXX------
REMARK S & W coverage with 1v70A
REMARK ------XXXXX-XXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXX-----XXXXXX------
REMARK S & W coverage with 1q90C
REMARK ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXX--XXXX-XXXX----XXXXXX-----
REMARK S & W coverage with 1vzgA
REMARK --XXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
REMARK S & W coverage with 1rfs_
REMARK --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXX--XXXXXXX-X----XXXXXXXXXXX
REMARK S & W coverage with 1yq2A
REMARK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXXX-
REMARK S & W coverage with 2cviA
REMARK XXXXXXXXXXXXXXXXXXXX-XXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
REMARK S & W coverage with 1irxA
REMARK XXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---
REMARK S & W coverage with 1yj5C
REMARK -----XXXXXXXXXXX-XXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXX---
REMARK S & W coverage with 1vs1A
REMARK XXXXXXXXXX-XXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
REMARK S & W coverage with 1ujxA
REMARK -----XXXXXXXXXXX-XXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXX---
REMARK S & W coverage with 1hxhA
REMARK ---XXXXXXXXXXXXXXXXX------XXX---XXX--XXXXXXXXXXXXXXXXX-XXXXXXXXX----
REMARK S & W coverage with 1vb7A
REMARK -----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----
REMARK S & W coverage with 1azpA
REMARK ----XXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
REMARK S & W coverage with 1r4iA
REMARK -------XXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXX--
REMARK S & W coverage with 1stfI
REMARK -------XXXXXX--------XXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXX-------
REMARK S & W coverage with 1z45A
REMARK -----XXXXXXXXXXX-XXXX----XXXXX---X---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
REMARK S & W coverage with 2ex5A
REMARK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXX---
REMARK S & W coverage with 1htjF
REMARK XXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXX---XXXXXXXXXXXXXXXXX---XXXXXXXXXXX
REMARK S & W coverage with 1z2qA
REMARK XXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXX---
REMARK S & W coverage with 1dfx_
REMARK --XXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
REMARK S & W coverage with 1ckmA
REMARK XXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
REMARK S & W coverage with 1avqA
REMARK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXX--
REMARK S & W coverage with 1jfxA
REMARK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----X--XXXXXXXXXXXXXXXXXXX--XXXXXXXXXX
REMARK S & W coverage with 1oy1A
REMARK XXXXXXXXXXXXX-XX-XXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXX-XX-----XXXXX----
REMARK S & W coverage with 2d8tA
REMARK -----XXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXX--XXXXX-XXXXXXXXXXXXXX-------
REMARK S & W coverage with 1vfyA
REMARK ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---X--XXXXX-XXX-X-XXXXXX--
REMARK S & W coverage with 1ds6B
REMARK --XXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXX-----------XXXXXXXXX--
REMARK S & W coverage with 1i6oA
REMARK -----XXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXX
REMARK S & W coverage with 2axoA
REMARK XXXXXXXXXX----XXXX--------XXX----XXXXXXXXXXXXXXX-XXXXXXXX-XXXXXX----
REMARK S & W coverage with 1mzhA
REMARK XXXXX-XXXXXXXXXXXXXXX----XXXXXXXXXXX--XXXX-XXXXXXXXXX-----XXXXXXXX--
REMARK 
REMARK ____________ Best detailed alignments       ______________________________
REMARK __________________________________________________________________________
REMARK Alignment to 1vlvA
REMARK z-score is 1414 sw cover: 0.07 nw cover 0.07
REMARK Seq ID 100 % (5 / 5) in 5 total including gaps
REMARK  :   
REMARK  :   
REMARK hhhhh
REMARK hhhhh
REMARK     :
REMARK 
REMARK __________________________________________________________________________
REMARK Alignment to 2amlA
REMARK z-score is 810.3 sw cover: 0.07 nw cover 0.07
REMARK Seq ID 100 % (5 / 5) in 5 total including gaps
REMARK  :   
REMARK  :   
REMARK hhhhh
REMARK hhhhh
REMARK     :
REMARK 
REMARK __________________________________________________________________________
REMARK Alignment to 1zkoA
REMARK z-score is 531.1 sw cover: 0.07 nw cover 0.07
REMARK Seq ID 100 % (5 / 5) in 5 total including gaps
REMARK  :   
REMARK  :   
REMARK hhhhh
REMARK hhhhh
REMARK     :
REMARK 
REMARK __________________________________________________________________________
REMARK Alignment to 1im4A
REMARK z-score is 505.5 sw cover: 0.07 nw cover 0.07
REMARK Seq ID 100 % (5 / 5) in 5 total including gaps
REMARK  :   
REMARK  :   
REMARK hhhhh
REMARK hhhhh
REMARK     :
REMARK 
REMARK __________________________________________________________________________
REMARK Alignment to 2afbA
REMARK z-score is 447 sw cover: 0.07 nw cover 0.07
REMARK Seq ID 100 % (5 / 5) in 5 total including gaps
REMARK  :   
REMARK  :   
REMARK hhhhh
REMARK hhhhh
REMARK     :
REMARK 
REMARK __________________________________________________________________________
REMARK Alignment to 1vljA
REMARK z-score is 193.6 sw cover: 0.07 nw cover 0.07
REMARK Seq ID 60 % (3 / 5) in 5 total including gaps
REMARK  :   
REMARK  :   
REMARK hhhhh
REMARK hhhme
REMARK     :
REMARK 
REMARK __________________________________________________________________________
REMARK Alignment to 1vmfA
REMARK z-score is 40.26 sw cover: 0.07 nw cover 0.07
REMARK Seq ID 60 % (3 / 5) in 5 total including gaps
REMARK  :   
REMARK  :   
REMARK hhhhh
REMARK hhhmk
REMARK     :
REMARK 
REMARK __________________________________________________________________________
REMARK Alignment to 1ltkA
REMARK z-score is 34.16 sw cover: 0.07 nw cover 0.07
REMARK Seq ID 60 % (3 / 5) in 5 total including gaps
REMARK  :   
REMARK  :   
REMARK hhhhh
REMARK hhhlg
REMARK     :
REMARK 
REMARK __________________________________________________________________________
REMARK Alignment to 1zx8A
REMARK z-score is 33.36 sw cover: 0.07 nw cover 0.07
REMARK Seq ID 60 % (3 / 5) in 5 total including gaps
REMARK  :   
REMARK  :   
REMARK hhhhh
REMARK hhhmr
REMARK     :
REMARK 
REMARK __________________________________________________________________________
REMARK Alignment to 2b8kB
REMARK z-score is 15.62 sw cover: 0.74 nw cover 0.84
REMARK Seq ID 18 % (9 / 50) in 61 total including gaps
REMARK :    1    :    2    :     3    :    4    :    5    :    6   
REMARK :    0    :    0    :     0    :    0    :    0    :    0   
REMARK fleilvcplckgplvfdkskdeli-ckgdrlafpikdgipmmlesearelapeeevkleh
REMARK afrvhicgicglmtviaklnhnqfeckg----cdnkidi-yqi-----hipyaakllfqe
REMARK     1    :    1    :    1        :    1          :    1    :
REMARK     0    :    0    :    0        :    0          :    0    :
REMARK     5    :    6    :    7        :    8          :    9    :
REMARK     0    :    0    :    0        :    0          :    0    :
REMARK 
REMARK  
REMARK  
REMARK h
REMARK l
REMARK  
REMARK  
REMARK  
REMARK  
REMARK 
REMARK Writing models for 10 structures
REMARK __________________________________________________________________________
REMARK Wurst gegessen at Tue Jun 27 20:39:15 2006
REMARK I took 56:51 min user and 0:16 min sys time
REMARK Run on node35
REMARK 
REMARK --LQKXL1E3KR-=-1UKHB7I33C-CUT-HERE-13G78646GQ-=-ZYYVVYQZ19
REMARK Content-Type: chemical/x-pdb
REMARK Content-Transfer-Encoding: 7bit
REMARK Content-Disposition: attachment;
REMARK  filename="1vlvA.pdb"
REMARK 
METHOD -------------
REMARK SCORE 1413.89
MODEL 1
PARENT 1vlv_A
REMARK Tue 27 Jun 2006 08:39:15 PM CEST
REMARK Now the original sequence follows. It probably has more
REMARK residues than the model below.
REMARK SEQRES   1     68  MET ASP ALA LYS PHE LEU GLU ILE LEU VAL CYS PRO LEU
REMARK SEQRES   2     68  CYS LYS GLY PRO LEU VAL PHE ASP LYS SER LYS ASP GLU
REMARK SEQRES   3     68  LEU ILE CYS LYS GLY ASP ARG LEU ALA PHE PRO ILE LYS
REMARK SEQRES   4     68  ASP GLY ILE PRO MET MET LEU GLU SER GLU ALA ARG GLU
REMARK SEQRES   5     68  LEU ALA PRO GLU GLU GLU VAL LYS LEU GLU HIS HIS HIS
REMARK SEQRES   6     68  HIS HIS HIS
ATOM      1  N   HIS    64     202.871 176.009  57.135  1.00  1.00
ATOM      2  CA  HIS    64     203.797 175.066  56.444  1.00  1.00
ATOM      3  C   HIS    64     204.292 175.670  55.138  1.00  1.00
ATOM      4  O   HIS    64     204.595 174.898  54.211  1.00  1.00
ATOM      5  CB  HIS    64     203.102 173.725  56.053  1.00  1.00
ATOM      6  N   HIS    65     204.409 177.009  55.058  1.00  1.00
ATOM      7  CA  HIS    65     204.420 177.798  53.768  1.00  1.00
ATOM      8  C   HIS    65     203.020 177.882  53.120  1.00  1.00
ATOM      9  O   HIS    65     202.567 178.988  52.821  1.00  1.00
ATOM     10  CB  HIS    65     205.419 177.306  52.720  1.00  1.00
ATOM     11  N   HIS    66     202.397 176.731  52.836  1.00  1.00
ATOM     12  CA  HIS    66     200.924 176.649  52.687  1.00  1.00
ATOM     13  C   HIS    66     200.455 175.746  53.790  1.00  1.00
ATOM     14  O   HIS    66     200.711 174.545  53.777  1.00  1.00
ATOM     15  CB  HIS    66     200.448 176.134  51.319  1.00  1.00
ATOM     16  N   HIS    67     199.798 176.350  54.770  1.00  1.00
ATOM     17  CA  HIS    67     199.216 175.622  55.881  1.00  1.00
ATOM     18  C   HIS    67     198.047 174.685  55.440  1.00  1.00
ATOM     19  O   HIS    67     197.103 175.128  54.773  1.00  1.00
ATOM     20  CB  HIS    67     198.755 176.652  56.923  1.00  1.00
ATOM     21  N   HIS    68     198.117 173.405  55.826  1.00  1.00
ATOM     22  CA  HIS    68     197.071 172.436  55.528  1.00  1.00
ATOM     23  C   HIS    68     195.877 172.637  56.474  1.00  1.00
ATOM     24  O   HIS    68     196.072 172.642  57.703  1.00  1.00
ATOM     25  CB  HIS    68     197.584 170.990  55.674  1.00  1.00
TER
END



