
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   26 (  128),  selected   26 , name T0372TS261_1_3-D2
# Molecule2: number of CA atoms  172 ( 1400),  selected  172 , name T0372_D2.pdb
# PARAMETERS: T0372TS261_1_3-D2.T0372_D2.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      R     118           -
LGA    -       -      A     119           -
LGA    -       -      Y     120           -
LGA    -       -      A     121           -
LGA    -       -      D     122           -
LGA    -       -      Y     123           -
LGA    -       -      I     124           -
LGA    -       -      Y     125           -
LGA    -       -      L     126           -
LGA    -       -      R     127           -
LGA    -       -      S     128           -
LGA    -       -      D     129           -
LGA    -       -      L     130           -
LGA    -       -      A     131           -
LGA    -       -      T     132           -
LGA    -       -      L     133           -
LGA    -       -      K     134           -
LGA    -       -      G     135           -
LGA    -       -      K     136           -
LGA    -       -      K     137           -
LGA    -       -      F     138           -
LGA    -       -      Q     139           -
LGA    -       -      A     140           -
LGA    -       -      K     141           -
LGA    -       -      R     142           -
LGA    -       -      N     143           -
LGA    -       -      H     144           -
LGA    -       -      I     145           -
LGA    -       -      N     146           -
LGA    -       -      R     147           -
LGA    -       -      F     148           -
LGA    -       -      R     149           -
LGA    -       -      N     150           -
LGA    -       -      T     151           -
LGA    -       -      Y     152           -
LGA    -       -      P     153           -
LGA    -       -      D     154           -
LGA    -       -      Y     155           -
LGA    -       -      E     156           -
LGA    -       -      Y     157           -
LGA    -       -      T     158           -
LGA    -       -      P     159           -
LGA    -       -      I     160           -
LGA    T     151      T     161          1.861
LGA    -       -      P     162           -
LGA    Y     152      D     163          1.638
LGA    P     153      R     164          3.179
LGA    -       -      I     165           -
LGA    D     154      Q     166          4.478
LGA    -       -      E     167           -
LGA    -       -      C     168           -
LGA    -       -      L     169           -
LGA    -       -      D     170           -
LGA    -       -      L     171           -
LGA    -       -      E     172           -
LGA    -       -      A     173           -
LGA    -       -      E     174           -
LGA    -       -      W     175           -
LGA    -       -      C     176           -
LGA    -       -      K     177           -
LGA    -       -      V     178           -
LGA    -       -      N     179           -
LGA    -       -      N     180           -
LGA    -       -      C     181           -
LGA    -       -      D     182           -
LGA    -       -      Q     183           -
LGA    -       -      Q     184           -
LGA    -       -      E     185           -
LGA    -       -      G     186           -
LGA    -       -      T     187           -
LGA    -       -      G     188           -
LGA    -       -      N     189           -
LGA    -       -      E     190           -
LGA    -       -      R     191           -
LGA    -       -      R     192           -
LGA    -       -      A     193           -
LGA    -       -      L     194           -
LGA    -       -      I     195           -
LGA    -       -      Y     196           -
LGA    -       -      A     197           -
LGA    -       -      L     198           -
LGA    -       -      H     199           -
LGA    -       -      N     200           -
LGA    -       -      F     201           -
LGA    -       -      E     202           -
LGA    -       -      A     203           -
LGA    -       -      L     204           -
LGA    -       -      G     205           -
LGA    -       -      L     206           -
LGA    -       -      T     207           -
LGA    -       -      G     208           -
LGA    -       -      G     209           -
LGA    -       -      I     210           -
LGA    -       -      L     211           -
LGA    -       -      H     212           -
LGA    -       -      V     213           -
LGA    -       -      N     214           -
LGA    -       -      G     215           -
LGA    -       -      K     216           -
LGA    -       -      I     217           -
LGA    -       -      V     218           -
LGA    -       -      A     219           -
LGA    -       -      F     220           -
LGA    -       -      T     221           -
LGA    -       -      F     222           -
LGA    -       -      G     223           -
LGA    -       -      M     224           -
LGA    -       -      P     225           -
LGA    -       -      I     226           -
LGA    -       -      N     227           -
LGA    -       -      H     228           -
LGA    -       -      E     229           -
LGA    -       -      T     230           -
LGA    -       -      F     231           -
LGA    -       -      G     232           -
LGA    -       -      V     233           -
LGA    -       -      H     234           -
LGA    -       -      V     235           -
LGA    -       -      E     236           -
LGA    -       -      K     237           -
LGA    -       -      A     238           -
LGA    -       -      D     239           -
LGA    -       -      T     240           -
LGA    -       -      S     241           -
LGA    -       -      I     242           -
LGA    -       -      D     243           -
LGA    -       -      G     244           -
LGA    -       -      A     245           -
LGA    -       -      Y     246           -
LGA    -       -      A     247           -
LGA    -       -      M     248           -
LGA    -       -      I     249           -
LGA    -       -      N     250           -
LGA    -       -      Y     251           -
LGA    -       -      E     252           -
LGA    -       -      F     253           -
LGA    -       -      A     254           -
LGA    -       -      N     255           -
LGA    -       -      R     256           -
LGA    -       -      I     257           -
LGA    -       -      P     258           -
LGA    -       -      E     259           -
LGA    -       -      Q     260           -
LGA    -       -      Y     261           -
LGA    -       -      I     262           -
LGA    -       -      Y     263           -
LGA    -       -      I     264           -
LGA    E     268      N     265          4.451
LGA    D     269      R     266          3.151
LGA    L     270      E     267          3.861
LGA    G     271      E     268          2.739
LGA    I     272      D     269          5.304
LGA    E     273      L     270          4.471
LGA    G     274      G     271          2.124
LGA    L     275      I     272          3.744
LGA    R     276      E     273          3.061
LGA    -       -      G     274           -
LGA    K     277      L     275          1.390
LGA    A     278      R     276          2.115
LGA    K     279      K     277          1.653
LGA    L     280      A     278          2.380
LGA    S     281      K     279          2.959
LGA    -       -      L     280           -
LGA    -       -      S     281           -
LGA    Y     282      Y     282          1.508
LGA    Q     283      Q     283          1.527
LGA    P     284      P     284          1.912
LGA    V     285      V     285          2.067
LGA    T     286      T     286          1.045
LGA    I     287      I     287          1.916
LGA    L     288      L     288          1.421
LGA    E     289      E     289          4.000

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   26  172    5.0     26    2.93    42.31      9.841     0.858

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.142784 * X  +  -0.110242 * Y  +   0.983595 * Z  +  17.098120
  Y_new =  -0.509620 * X  +   0.843730 * Y  +   0.168545 * Z  +  19.928394
  Z_new =  -0.848469 * X  +  -0.525326 * Y  +   0.064289 * Z  +  67.977577 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.449022    1.692571  [ DEG:   -83.0228     96.9772 ]
  Theta =   1.013086    2.128507  [ DEG:    58.0455    121.9545 ]
  Phi   =  -1.297624    1.843969  [ DEG:   -74.3484    105.6516 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS261_1_3-D2                             
REMARK     2: T0372_D2.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0372TS261_1_3-D2.T0372_D2.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   26  172   5.0   26   2.93   42.31   9.841
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS261_1_3-D2
REMARK PARENT number 3
PFRMAT TS
TARGET T0372
PARENT 2fck_A
ATOM    891  N   THR   151      50.872  45.203  32.850  1.00  6.37
ATOM    892  CA  THR   151      51.022  44.491  31.556  1.00  6.37
ATOM    893  C   THR   151      52.496  44.259  31.222  1.00  6.37
ATOM    894  O   THR   151      53.334  45.168  31.223  1.00  6.37
ATOM    895  CB  THR   151      50.334  45.260  30.433  1.00  6.37
ATOM    896  N   TYR   152      52.789  43.007  30.945  1.00  5.43
ATOM    897  CA  TYR   152      54.009  42.603  30.327  1.00  5.43
ATOM    898  C   TYR   152      53.595  41.438  29.464  1.00  5.43
ATOM    899  O   TYR   152      52.467  40.913  29.608  1.00  5.43
ATOM    900  CB  TYR   152      54.980  42.111  31.367  1.00  5.43
ATOM    901  N   PRO   153      54.455  41.024  28.543  1.00  3.03
ATOM    902  CA  PRO   153      54.070  39.844  27.766  1.00  3.03
ATOM    903  C   PRO   153      53.790  38.595  28.624  1.00  3.03
ATOM    904  O   PRO   153      53.248  37.610  28.106  1.00  3.03
ATOM    905  CB  PRO   153      55.292  39.600  26.863  1.00  3.03
ATOM    906  N   ASP   154      54.145  38.650  29.903  1.00  5.30
ATOM    907  CA  ASP   154      53.965  37.493  30.781  1.00  5.30
ATOM    908  C   ASP   154      52.621  37.510  31.511  1.00  5.30
ATOM    909  O   ASP   154      52.286  36.562  32.275  1.00  5.30
ATOM    910  CB  ASP   154      55.106  37.433  31.798  1.00  5.30
ATOM    911  N   GLU   268      30.568  44.672  22.336  1.00  3.01
ATOM    912  CA  GLU   268      30.813  43.504  21.489  1.00  3.01
ATOM    913  C   GLU   268      30.100  43.702  20.166  1.00  3.01
ATOM    914  O   GLU   268      28.955  44.146  20.213  1.00  3.01
ATOM    915  CB  GLU   268      30.284  42.281  22.184  1.00  3.01
ATOM    916  N   ASP   269      30.764  43.463  19.012  1.00  3.69
ATOM    917  CA  ASP   269      30.113  43.565  17.697  1.00  3.69
ATOM    918  C   ASP   269      30.070  42.160  17.113  1.00  3.69
ATOM    919  O   ASP   269      31.119  41.548  16.954  1.00  3.69
ATOM    920  CB  ASP   269      30.892  44.477  16.693  1.00  3.69
ATOM    921  N   LEU   270      28.883  41.653  16.822  1.00  6.60
ATOM    922  CA  LEU   270      28.787  40.319  16.234  1.00  6.60
ATOM    923  C   LEU   270      28.349  40.405  14.796  1.00  6.60
ATOM    924  O   LEU   270      27.534  41.256  14.441  1.00  6.60
ATOM    925  CB  LEU   270      27.756  39.463  16.986  1.00  6.60
ATOM    926  N   GLY   271      28.853  39.493  13.967  1.00  5.45
ATOM    927  CA  GLY   271      28.339  39.356  12.615  1.00  5.45
ATOM    928  C   GLY   271      26.885  38.918  12.765  1.00  5.45
ATOM    929  O   GLY   271      26.624  37.945  13.486  1.00  5.45
ATOM    930  N   ILE   272      25.926  39.595  12.081  1.00  4.52
ATOM    931  CA  ILE   272      24.509  39.161  12.242  1.00  4.52
ATOM    932  C   ILE   272      24.268  37.686  11.886  1.00  4.52
ATOM    933  O   ILE   272      23.278  37.090  12.335  1.00  4.52
ATOM    934  CB  ILE   272      23.747  40.054  11.244  1.00  4.52
ATOM    935  N   GLU   273      25.161  37.091  11.102  1.00  4.56
ATOM    936  CA  GLU   273      24.952  35.698  10.658  1.00  4.56
ATOM    937  C   GLU   273      25.600  34.678  11.568  1.00  4.56
ATOM    938  O   GLU   273      25.481  33.483  11.329  1.00  4.56
ATOM    939  CB  GLU   273      25.505  35.494   9.264  1.00  4.56
ATOM    940  N   GLY   274      26.308  35.149  12.587  1.00  5.71
ATOM    941  CA  GLY   274      26.994  34.285  13.535  1.00  5.71
ATOM    942  C   GLY   274      26.184  34.209  14.836  1.00  5.71
ATOM    943  O   GLY   274      26.451  34.884  15.827  1.00  5.71
ATOM    944  N   LEU   275      25.168  33.370  14.822  1.00  6.59
ATOM    945  CA  LEU   275      24.281  33.277  15.979  1.00  6.59
ATOM    946  C   LEU   275      24.959  32.764  17.268  1.00  6.59
ATOM    947  O   LEU   275      24.724  33.306  18.342  1.00  6.59
ATOM    948  CB  LEU   275      22.997  32.492  15.617  1.00  6.59
ATOM    949  N   ARG   276      25.810  31.722  17.180  1.00  5.99
ATOM    950  CA  ARG   276      26.497  31.272  18.407  1.00  5.99
ATOM    951  C   ARG   276      27.283  32.410  19.102  1.00  5.99
ATOM    952  O   ARG   276      27.297  32.472  20.325  1.00  5.99
ATOM    953  CB  ARG   276      27.409  30.142  17.908  1.00  5.99
ATOM    954  N   LYS   277      27.842  33.351  18.339  1.00  6.38
ATOM    955  CA  LYS   277      28.647  34.439  18.946  1.00  6.38
ATOM    956  C   LYS   277      27.708  35.410  19.684  1.00  6.38
ATOM    957  O   LYS   277      28.026  35.990  20.738  1.00  6.38
ATOM    958  CB  LYS   277      29.484  35.203  17.884  1.00  6.38
ATOM    959  N   ALA   278      26.529  35.600  19.103  1.00  8.22
ATOM    960  CA  ALA   278      25.518  36.428  19.754  1.00  8.22
ATOM    961  C   ALA   278      25.037  35.768  21.050  1.00  8.22
ATOM    962  O   ALA   278      24.923  36.440  22.085  1.00  8.22
ATOM    963  CB  ALA   278      24.328  36.636  18.799  1.00  8.22
ATOM    964  N   LYS   279      24.754  34.462  20.965  1.00  4.87
ATOM    965  CA  LYS   279      24.230  33.677  22.097  1.00  4.87
ATOM    966  C   LYS   279      25.253  33.755  23.263  1.00  4.87
ATOM    967  O   LYS   279      24.862  33.898  24.415  1.00  4.87
ATOM    968  CB  LYS   279      23.964  32.200  21.676  1.00  4.87
ATOM    969  N   LEU   280      26.553  33.710  22.937  1.00  5.56
ATOM    970  CA  LEU   280      27.613  33.780  23.965  1.00  5.56
ATOM    971  C   LEU   280      27.610  35.189  24.616  1.00  5.56
ATOM    972  O   LEU   280      27.641  35.306  25.841  1.00  5.56
ATOM    973  CB  LEU   280      28.983  33.455  23.358  1.00  5.56
ATOM    974  N   SER   281      27.464  36.229  23.799  1.00  5.62
ATOM    975  CA  SER   281      27.419  37.586  24.337  1.00  5.62
ATOM    976  C   SER   281      26.269  37.666  25.361  1.00  5.62
ATOM    977  O   SER   281      26.444  38.166  26.499  1.00  5.62
ATOM    978  CB  SER   281      27.215  38.636  23.215  1.00  5.62
ATOM    979  N   TYR   282      25.393  40.382  28.279  1.00  3.69
ATOM    980  CA  TYR   282      25.399  41.566  27.406  1.00  3.69
ATOM    981  C   TYR   282      23.990  41.902  27.009  1.00  3.69
ATOM    982  O   TYR   282      23.091  41.048  27.066  1.00  3.69
ATOM    983  CB  TYR   282      26.307  41.383  26.166  1.00  3.69
ATOM    984  N   GLN   283      23.792  43.172  26.665  1.00  3.96
ATOM    985  CA  GLN   283      22.490  43.611  26.201  1.00  3.96
ATOM    986  C   GLN   283      22.569  43.990  24.737  1.00  3.96
ATOM    987  O   GLN   283      23.430  44.766  24.340  1.00  3.96
ATOM    988  CB  GLN   283      22.026  44.808  27.024  1.00  3.96
ATOM    989  N   PRO   284      21.666  43.459  23.934  1.00  6.99
ATOM    990  CA  PRO   284      21.691  43.827  22.522  1.00  6.99
ATOM    991  C   PRO   284      21.210  45.242  22.335  1.00  6.99
ATOM    992  O   PRO   284      20.196  45.662  22.936  1.00  6.99
ATOM    993  CB  PRO   284      20.817  42.845  21.731  1.00  6.99
ATOM    994  N   VAL   285      21.939  45.979  21.498  1.00  3.12
ATOM    995  CA  VAL   285      21.500  47.276  21.058  1.00  3.12
ATOM    996  C   VAL   285      21.282  47.159  19.561  1.00  3.12
ATOM    997  O   VAL   285      20.468  46.377  19.084  1.00  3.12
ATOM    998  CB  VAL   285      22.515  48.379  21.433  1.00  3.12
ATOM    999  N   THR   286      22.061  47.895  18.809  1.00  5.11
ATOM   1000  CA  THR   286      21.728  48.160  17.454  1.00  5.11
ATOM   1001  C   THR   286      22.242  47.148  16.434  1.00  5.11
ATOM   1002  O   THR   286      23.226  46.442  16.679  1.00  5.11
ATOM   1003  CB  THR   286      22.258  49.550  17.123  1.00  5.11
ATOM   1004  N   ILE   287      21.558  47.081  15.291  1.00  3.17
ATOM   1005  CA  ILE   287      22.157  46.558  14.106  1.00  3.17
ATOM   1006  C   ILE   287      22.736  47.817  13.423  1.00  3.17
ATOM   1007  O   ILE   287      21.971  48.695  12.987  1.00  3.17
ATOM   1008  CB  ILE   287      21.066  45.984  13.191  1.00  3.17
ATOM   1009  N   LEU   288      24.045  47.889  13.352  1.00  1.40
ATOM   1010  CA  LEU   288      24.741  49.113  12.926  1.00  1.40
ATOM   1011  C   LEU   288      25.450  48.911  11.584  1.00  1.40
ATOM   1012  O   LEU   288      26.350  48.074  11.479  1.00  1.40
ATOM   1013  CB  LEU   288      25.711  49.470  13.982  1.00  1.40
ATOM   1014  N   GLU   289      25.096  49.719  10.565  1.00  2.06
ATOM   1015  CA  GLU   289      25.812  49.585   9.283  1.00  2.06
ATOM   1016  C   GLU   289      27.296  49.973   9.382  1.00  2.06
ATOM   1017  O   GLU   289      27.685  50.805  10.234  1.00  2.06
ATOM   1018  CB  GLU   289      25.060  50.534   8.337  1.00  2.06
TER
END
