
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   24 (   96),  selected   24 , name T0372AL044_2-D2
# Molecule2: number of CA atoms  172 ( 1400),  selected  172 , name T0372_D2.pdb
# PARAMETERS: T0372AL044_2-D2.T0372_D2.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      R     118           -
LGA    -       -      A     119           -
LGA    -       -      Y     120           -
LGA    -       -      A     121           -
LGA    -       -      D     122           -
LGA    -       -      Y     123           -
LGA    -       -      I     124           -
LGA    -       -      Y     125           -
LGA    -       -      L     126           -
LGA    -       -      R     127           -
LGA    -       -      S     128           -
LGA    -       -      D     129           -
LGA    -       -      L     130           -
LGA    -       -      A     131           -
LGA    -       -      T     132           -
LGA    -       -      L     133           -
LGA    -       -      K     134           -
LGA    -       -      G     135           -
LGA    -       -      K     136           -
LGA    -       -      K     137           -
LGA    -       -      F     138           -
LGA    -       -      Q     139           -
LGA    -       -      A     140           -
LGA    -       -      K     141           -
LGA    -       -      R     142           -
LGA    -       -      N     143           -
LGA    -       -      H     144           -
LGA    -       -      I     145           -
LGA    -       -      N     146           -
LGA    -       -      R     147           -
LGA    -       -      F     148           -
LGA    -       -      R     149           -
LGA    -       -      N     150           -
LGA    -       -      T     151           -
LGA    -       -      Y     152           -
LGA    -       -      P     153           -
LGA    -       -      D     154           -
LGA    -       -      Y     155           -
LGA    -       -      E     156           -
LGA    -       -      Y     157           -
LGA    -       -      T     158           -
LGA    -       -      P     159           -
LGA    -       -      I     160           -
LGA    -       -      T     161           -
LGA    -       -      P     162           -
LGA    -       -      D     163           -
LGA    -       -      R     164           -
LGA    -       -      I     165           -
LGA    -       -      Q     166           -
LGA    -       -      E     167           -
LGA    -       -      C     168           -
LGA    -       -      L     169           -
LGA    -       -      D     170           -
LGA    -       -      L     171           -
LGA    -       -      E     172           -
LGA    -       -      A     173           -
LGA    -       -      E     174           -
LGA    -       -      W     175           -
LGA    -       -      C     176           -
LGA    -       -      K     177           -
LGA    -       -      V     178           -
LGA    -       -      N     179           -
LGA    -       -      N     180           -
LGA    -       -      C     181           -
LGA    -       -      D     182           -
LGA    -       -      Q     183           -
LGA    -       -      Q     184           -
LGA    -       -      E     185           -
LGA    -       -      G     186           -
LGA    -       -      T     187           -
LGA    -       -      G     188           -
LGA    -       -      N     189           -
LGA    -       -      E     190           -
LGA    -       -      R     191           -
LGA    R     118      R     192          1.140
LGA    A     119      A     193          1.227
LGA    Y     120      L     194          1.654
LGA    A     121      I     195          1.544
LGA    D     122      Y     196          1.457
LGA    Y     123      A     197          1.472
LGA    I     124      L     198          1.541
LGA    Y     125      H     199          1.751
LGA    L     126      N     200          3.107
LGA    R     127      F     201          2.951
LGA    -       -      E     202           -
LGA    -       -      A     203           -
LGA    -       -      L     204           -
LGA    S     128      G     205          3.038
LGA    D     129      L     206          3.062
LGA    L     130      T     207          2.031
LGA    -       -      G     208           -
LGA    -       -      G     209           -
LGA    -       -      I     210           -
LGA    -       -      L     211           -
LGA    -       -      H     212           -
LGA    -       -      V     213           -
LGA    -       -      N     214           -
LGA    -       -      G     215           -
LGA    -       -      K     216           -
LGA    -       -      I     217           -
LGA    -       -      V     218           -
LGA    -       -      A     219           -
LGA    -       -      F     220           -
LGA    -       -      T     221           -
LGA    -       -      F     222           -
LGA    -       -      G     223           -
LGA    -       -      M     224           -
LGA    -       -      P     225           -
LGA    -       -      I     226           -
LGA    -       -      N     227           -
LGA    -       -      H     228           -
LGA    -       -      E     229           -
LGA    -       -      T     230           -
LGA    -       -      F     231           -
LGA    -       -      G     232           -
LGA    -       -      V     233           -
LGA    -       -      H     234           -
LGA    -       -      V     235           -
LGA    -       -      E     236           -
LGA    -       -      K     237           -
LGA    -       -      A     238           -
LGA    -       -      D     239           -
LGA    -       -      T     240           -
LGA    -       -      S     241           -
LGA    -       -      I     242           -
LGA    -       -      D     243           -
LGA    -       -      G     244           -
LGA    -       -      A     245           -
LGA    -       -      Y     246           -
LGA    -       -      A     247           -
LGA    -       -      M     248           -
LGA    -       -      I     249           -
LGA    -       -      N     250           -
LGA    -       -      Y     251           -
LGA    -       -      E     252           -
LGA    A     131      F     253          4.442
LGA    T     132      A     254          3.797
LGA    L     133      N     255           -
LGA    -       -      R     256           -
LGA    K     134      I     257          2.925
LGA    G     135      P     258          2.535
LGA    K     136      E     259           -
LGA    K     137      Q     260           -
LGA    F     138      Y     261           -
LGA    Q     139      I     262           -
LGA    A     140      Y     263           -
LGA    -       -      I     264           -
LGA    -       -      N     265           -
LGA    -       -      R     266           -
LGA    -       -      E     267           -
LGA    -       -      E     268           -
LGA    -       -      D     269           -
LGA    -       -      L     270           -
LGA    N     143      G     271          4.637
LGA    -       -      I     272           -
LGA    -       -      E     273           -
LGA    -       -      G     274           -
LGA    -       -      L     275           -
LGA    -       -      R     276           -
LGA    -       -      K     277           -
LGA    -       -      A     278           -
LGA    -       -      K     279           -
LGA    -       -      L     280           -
LGA    -       -      S     281           -
LGA    -       -      Y     282           -
LGA    -       -      Q     283           -
LGA    -       -      P     284           -
LGA    -       -      V     285           -
LGA    -       -      T     286           -
LGA    -       -      I     287           -
LGA    -       -      L     288           -
LGA    -       -      E     289           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   24  172    5.0     18    2.68    11.11      8.078     0.647

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.954146 * X  +   0.187738 * Y  +   0.233153 * Z  +  22.736761
  Y_new =   0.299318 * X  +  -0.588313 * Y  +  -0.751197 * Z  +  54.466682
  Z_new =  -0.003861 * X  +   0.786538 * Y  +  -0.617530 * Z  +  28.650030 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.236400   -0.905192  [ DEG:   128.1363    -51.8637 ]
  Theta =   0.003861    3.137732  [ DEG:     0.2212    179.7788 ]
  Phi   =   0.303980   -2.837613  [ DEG:    17.4168   -162.5832 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372AL044_2-D2                               
REMARK     2: T0372_D2.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0372AL044_2-D2.T0372_D2.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   24  172   5.0   18   2.68   11.11   8.078
REMARK  ---------------------------------------------------------- 
MOLECULE T0372AL044_2-D2
REMARK Aligment from pdb entry: 1tz0_A
ATOM    149  N   ARG   118      44.780  35.523  12.545  1.00  0.00              
ATOM    150  CA  ARG   118      45.932  36.403  12.233  1.00  0.00              
ATOM    151  C   ARG   118      45.640  37.810  12.715  1.00  0.00              
ATOM    152  O   ARG   118      46.479  38.442  13.321  1.00  0.00              
ATOM    153  N   ALA   119      44.429  38.290  12.488  1.00  0.00              
ATOM    154  CA  ALA   119      44.064  39.639  12.936  1.00  0.00              
ATOM    155  C   ALA   119      44.080  39.751  14.448  1.00  0.00              
ATOM    156  O   ALA   119      44.561  40.721  14.990  1.00  0.00              
ATOM    157  N   TYR   120      43.529  38.757  15.143  1.00  0.00              
ATOM    158  CA  TYR   120      43.582  38.731  16.585  1.00  0.00              
ATOM    159  C   TYR   120      45.042  38.681  17.067  1.00  0.00              
ATOM    160  O   TYR   120      45.393  39.361  18.015  1.00  0.00              
ATOM    161  N   ALA   121      45.886  37.892  16.409  1.00  0.00              
ATOM    162  CA  ALA   121      47.273  37.772  16.860  1.00  0.00              
ATOM    163  C   ALA   121      48.025  39.074  16.541  1.00  0.00              
ATOM    164  O   ALA   121      48.913  39.458  17.277  1.00  0.00              
ATOM    165  N   ASP   122      47.632  39.750  15.471  1.00  0.00              
ATOM    166  CA  ASP   122      48.219  41.062  15.145  1.00  0.00              
ATOM    167  C   ASP   122      47.903  42.040  16.272  1.00  0.00              
ATOM    168  O   ASP   122      48.789  42.691  16.821  1.00  0.00              
ATOM    169  N   TYR   123      46.635  42.090  16.674  1.00  0.00              
ATOM    170  CA  TYR   123      46.202  42.849  17.844  1.00  0.00              
ATOM    171  C   TYR   123      46.927  42.467  19.126  1.00  0.00              
ATOM    172  O   TYR   123      47.173  43.320  19.990  1.00  0.00              
ATOM    173  N   ILE   124      47.258  41.192  19.283  1.00  0.00              
ATOM    174  CA  ILE   124      48.027  40.763  20.457  1.00  0.00              
ATOM    175  C   ILE   124      49.478  41.271  20.426  1.00  0.00              
ATOM    176  O   ILE   124      50.131  41.250  21.447  1.00  0.00              
ATOM    177  N   TYR   125      50.005  41.697  19.268  1.00  0.00              
ATOM    178  CA  TYR   125      51.325  42.367  19.233  1.00  0.00              
ATOM    179  C   TYR   125      51.278  43.839  19.663  1.00  0.00              
ATOM    180  O   TYR   125      52.329  44.503  19.817  1.00  0.00              
ATOM    181  N   LEU   126      50.079  44.356  19.872  1.00  0.00              
ATOM    182  CA  LEU   126      49.904  45.777  20.057  1.00  0.00              
ATOM    183  C   LEU   126      50.344  46.248  21.435  1.00  0.00              
ATOM    184  O   LEU   126      50.246  45.541  22.414  1.00  0.00              
ATOM    185  N   ARG   127      50.798  47.491  21.473  1.00  0.00              
ATOM    186  CA  ARG   127      51.074  48.219  22.706  1.00  0.00              
ATOM    187  C   ARG   127      49.844  48.979  23.162  1.00  0.00              
ATOM    188  O   ARG   127      49.895  49.671  24.176  1.00  0.00              
ATOM    189  N   SER   128      48.737  48.844  22.435  1.00  0.00              
ATOM    190  CA  SER   128      47.618  49.773  22.556  1.00  0.00              
ATOM    191  C   SER   128      46.417  49.237  23.348  1.00  0.00              
ATOM    192  O   SER   128      45.320  49.814  23.290  1.00  0.00              
ATOM    193  N   ASP   129      46.619  48.161  24.101  1.00  0.00              
ATOM    194  CA  ASP   129      45.503  47.525  24.817  1.00  0.00              
ATOM    195  C   ASP   129      45.046  48.389  25.996  1.00  0.00              
ATOM    196  O   ASP   129      45.877  48.949  26.722  1.00  0.00              
ATOM    197  N   LEU   130      43.729  48.440  26.209  1.00  0.00              
ATOM    198  CA  LEU   130      43.111  49.183  27.317  1.00  0.00              
ATOM    199  C   LEU   130      42.147  48.300  28.109  1.00  0.00              
ATOM    200  O   LEU   130      41.499  47.417  27.547  1.00  0.00              
ATOM    201  N   ALA   131      42.048  48.551  29.410  1.00  0.00              
ATOM    202  CA  ALA   131      41.147  47.786  30.274  1.00  0.00              
ATOM    203  C   ALA   131      39.762  48.137  29.805  1.00  0.00              
ATOM    204  O   ALA   131      39.485  49.324  29.552  1.00  0.00              
ATOM    205  N   THR   132      38.907  47.122  29.614  1.00  0.00              
ATOM    206  CA  THR   132      37.587  47.336  29.049  1.00  0.00              
ATOM    207  C   THR   132      37.527  47.771  27.591  1.00  0.00              
ATOM    208  O   THR   132      36.447  48.090  27.072  1.00  0.00              
ATOM    209  N   LEU   133      38.678  47.811  26.915  1.00  0.00              
ATOM    210  CA  LEU   133      38.743  48.321  25.539  1.00  0.00              
ATOM    211  C   LEU   133      38.098  49.690  25.382  1.00  0.00              
ATOM    212  O   LEU   133      37.451  49.973  24.380  1.00  0.00              
ATOM    213  N   LYS   134      38.304  50.536  26.396  1.00  0.00              
ATOM    214  CA  LYS   134      37.890  51.933  26.354  1.00  0.00              
ATOM    215  C   LYS   134      38.785  52.790  27.263  1.00  0.00              
ATOM    216  O   LYS   134      39.632  52.270  27.995  1.00  0.00              
ATOM    217  N   GLY   135      38.584  54.104  27.198  1.00  0.00              
ATOM    218  CA  GLY   135      39.135  55.041  28.175  1.00  0.00              
ATOM    219  C   GLY   135      38.044  55.463  29.179  1.00  0.00              
ATOM    220  O   GLY   135      36.847  55.473  28.854  1.00  0.00              
ATOM    221  N   LYS   136      34.309  53.277  35.192  1.00  0.00              
ATOM    222  CA  LYS   136      34.541  53.762  36.539  1.00  0.00              
ATOM    223  C   LYS   136      34.067  52.839  37.662  1.00  0.00              
ATOM    224  O   LYS   136      32.911  52.962  38.068  1.00  0.00              
ATOM    225  N   LYS   137      34.899  51.924  38.181  1.00  0.00              
ATOM    226  CA  LYS   137      36.263  51.624  37.689  1.00  0.00              
ATOM    227  C   LYS   137      36.819  50.260  38.219  1.00  0.00              
ATOM    228  O   LYS   137      36.106  49.265  38.067  1.00  0.00              
ATOM    229  N   PHE   138      38.020  50.154  38.832  1.00  0.00              
ATOM    230  CA  PHE   138      38.687  48.846  38.894  1.00  0.00              
ATOM    231  C   PHE   138      38.400  48.122  40.207  1.00  0.00              
ATOM    232  O   PHE   138      39.101  48.345  41.199  1.00  0.00              
ATOM    233  N   GLN   139      37.370  47.275  40.204  1.00  0.00              
ATOM    234  CA  GLN   139      36.910  46.594  41.414  1.00  0.00              
ATOM    235  C   GLN   139      36.813  45.070  41.226  1.00  0.00              
ATOM    236  O   GLN   139      35.826  44.557  40.700  1.00  0.00              
ATOM    237  N   ALA   140      31.151  26.983  10.420  1.00  0.00              
ATOM    238  CA  ALA   140      29.927  27.022   9.609  1.00  0.00              
ATOM    239  C   ALA   140      29.040  28.165  10.113  1.00  0.00              
ATOM    240  O   ALA   140      29.082  28.499  11.300  1.00  0.00              
ATOM    241  N   ASN   143      28.257  28.774   9.221  1.00  0.00              
ATOM    242  CA  ASN   143      27.263  29.777   9.601  1.00  0.00              
ATOM    243  C   ASN   143      26.236  29.991   8.507  1.00  0.00              
ATOM    244  O   ASN   143      26.469  29.606   7.375  1.00  0.00              
END
