
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS599_1-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS599_1-D1.T0356_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      -       -           -
LGA    D       8      -       -           -
LGA    L       9      -       -           -
LGA    R      10      -       -           -
LGA    D      11      -       -           -
LGA    F      12      -       -           -
LGA    L      13      -       -           -
LGA    T      14      -       -           -
LGA    L      15      -       -           -
LGA    L      16      -       -           -
LGA    E      17      -       -           -
LGA    Q      18      -       -           -
LGA    Q      19      -       -           -
LGA    G      20      N       7          2.585
LGA    E      21      -       -           -
LGA    L      22      -       -           -
LGA    K      23      -       -           -
LGA    R      24      D       8          3.709
LGA    I      25      -       -           -
LGA    T      26      -       -           -
LGA    L      27      -       -           -
LGA    P      28      -       -           -
LGA    V      29      -       -           -
LGA    D      30      L       9          2.693
LGA    P      31      R      10          1.361
LGA    H      32      D      11           #
LGA    L      33      F      12           -
LGA    -       -      L      13           -
LGA    -       -      T      14           -
LGA    -       -      L      15           -
LGA    -       -      L      16           -
LGA    E      34      E      17           #
LGA    -       -      Q      18           -
LGA    -       -      Q      19           -
LGA    -       -      G      20           -
LGA    -       -      E      21           -
LGA    -       -      L      22           -
LGA    I      35      K      23          4.355
LGA    T      36      R      24          2.407
LGA    E      37      I      25           -
LGA    I      38      T      26           -
LGA    -       -      L      27           -
LGA    -       -      P      28           -
LGA    -       -      V      29           -
LGA    -       -      D      30           -
LGA    -       -      P      31           -
LGA    -       -      H      32           -
LGA    -       -      L      33           -
LGA    -       -      E      34           -
LGA    -       -      I      35           -
LGA    -       -      T      36           -
LGA    -       -      E      37           -
LGA    -       -      I      38           -
LGA    A      39      A      39           #
LGA    D      40      D      40           -
LGA    R      41      R      41           -
LGA    T      42      T      42          5.557
LGA    L      43      -       -           -
LGA    R      44      -       -           -
LGA    A      45      -       -           -
LGA    G      46      -       -           -
LGA    G      47      -       -           -
LGA    P      48      L      43          1.442
LGA    A      49      R      44           #
LGA    -       -      A      45           -
LGA    -       -      G      46           -
LGA    -       -      G      47           -
LGA    -       -      P      48           -
LGA    L      50      A      49           #
LGA    L      51      L      50          3.644
LGA    F      52      L      51          3.283
LGA    E      53      F      52          2.264
LGA    N      54      E      53          1.532
LGA    P      55      N      54           -
LGA    K      56      P      55           -
LGA    -       -      K      56           -
LGA    -       -      G      57           -
LGA    -       -      Y      58           -
LGA    -       -      S      59           -
LGA    G      57      M      60          3.040
LGA    Y      58      P      61          4.417
LGA    S      59      V      62          1.924
LGA    M      60      L      63          1.377
LGA    P      61      C      64          0.713
LGA    V      62      N      65          2.063
LGA    L      63      L      66          3.690
LGA    C      64      F      67          1.620
LGA    N      65      G      68          5.264
LGA    L      66      T      69          2.274
LGA    -       -      P      70           -
LGA    F      67      K      71           #
LGA    G      68      R      72          2.389
LGA    T      69      V      73          4.967
LGA    P      70      A      74          3.563
LGA    K      71      M      75          4.787
LGA    R      72      G      76           #
LGA    -       -      M      77           -
LGA    V      73      G      78          3.188
LGA    A      74      Q      79          1.396
LGA    M      75      E      80           #
LGA    G      76      -       -           -
LGA    M      77      -       -           -
LGA    G      78      -       -           -
LGA    Q      79      -       -           -
LGA    E      80      -       -           -
LGA    D      81      D      81           #
LGA    -       -      V      82           -
LGA    -       -      S      83           -
LGA    V      82      A      84          1.899
LGA    -       -      L      85           -
LGA    S      83      R      86          1.329
LGA    A      84      E      87          1.879
LGA    L      85      V      88          2.507
LGA    R      86      -       -           -
LGA    E      87      G      89          0.242
LGA    V      88      K      90          3.006
LGA    G      89      L      91          3.913
LGA    K      90      L      92          3.080
LGA    L      91      A      93          3.073
LGA    L      92      F      94          4.862
LGA    A      93      L      95           #
LGA    F      94      -       -           -
LGA    L      95      K      96          2.361
LGA    K      96      D     314           -
LGA    D     314      A     315           -
LGA    A     315      I     316           -
LGA    I     316      Y     317           -
LGA    Y     317      H     318           -
LGA    H     318      S     319           -
LGA    S     319      T     320           -
LGA    T     320      Y     321           -
LGA    Y     321      T     322           -
LGA    T     322      G     323           -
LGA    G     323      R     324           -
LGA    R     324      P     325           -
LGA    P     325      P     326           -
LGA    P     326      D     327           -
LGA    D     327      E     328           -
LGA    E     328      P     329           -
LGA    P     329      A     330           -
LGA    A     330      V     331           -
LGA    V     331      L     332           -
LGA    L     332      G     333           -
LGA    G     333      V     334           -
LGA    V     334      A     335           -
LGA    A     335      L     336           -
LGA    L     336      N     337           -
LGA    N     337      E     338           -
LGA    E     338      V     339           -
LGA    V     339      F     340           -
LGA    F     340      V     341           -
LGA    V     341      P     342           -
LGA    P     342      I     343           -
LGA    I     343      L     344           -
LGA    L     344      Q     345           -
LGA    Q     345      K     346           -
LGA    K     346      Q     347           -
LGA    Q     347      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  124  124    5.0     39    3.09     7.69     19.218     1.222

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.096513 * X  +  -0.989144 * Y  +  -0.110810 * Z  +  79.767265
  Y_new =   0.770344 * X  +  -0.003735 * Y  +  -0.637617 * Z  +  33.664238
  Z_new =   0.630282 * X  +  -0.146900 * Y  +   0.762342 * Z  +  75.417671 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.190363    2.951230  [ DEG:   -10.9070    169.0930 ]
  Theta =  -0.681916   -2.459677  [ DEG:   -39.0709   -140.9291 ]
  Phi   =   1.695433   -1.446160  [ DEG:    97.1412    -82.8588 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_1-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_1-D1.T0356_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  124  124   5.0   39   3.09    7.69  19.218
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_1-D1
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      7  CA  ASN     7      78.950  81.266  58.850  1.00  0.00              
ATOM      8  CA  ASP     8      75.804  82.053  60.391  1.00  0.00              
ATOM      9  CA  LEU     9      75.582  79.176  62.411  1.00  0.00              
ATOM     10  CA  ARG    10      78.845  79.405  63.475  1.00  0.00              
ATOM     11  CA  ASP    11      79.637  82.711  64.716  1.00  0.00              
ATOM     12  CA  PHE    12      76.660  82.737  66.808  1.00  0.00              
ATOM     13  CA  LEU    13      77.277  79.674  68.818  1.00  0.00              
ATOM     14  CA  THR    14      81.294  81.036  69.207  1.00  0.00              
ATOM     15  CA  LEU    15      79.648  84.318  70.567  1.00  0.00              
ATOM     16  CA  LEU    16      77.310  82.796  72.767  1.00  0.00              
ATOM     17  CA  GLU    17      79.870  80.705  74.684  1.00  0.00              
ATOM     18  CA  GLN    18      81.653  83.794  75.736  1.00  0.00              
ATOM     19  CA  GLN    19      78.916  84.903  77.043  1.00  0.00              
ATOM     20  CA  GLY    20      78.268  81.750  79.042  1.00  0.00              
ATOM     21  CA  GLU    21      74.946  81.882  78.032  1.00  0.00              
ATOM     22  CA  LEU    22      74.213  78.747  75.725  1.00  0.00              
ATOM     23  CA  LYS    23      75.005  76.909  78.821  1.00  0.00              
ATOM     24  CA  ARG    24      72.832  78.081  81.473  1.00  0.00              
ATOM     25  CA  ILE    25      69.710  77.701  79.633  1.00  0.00              
ATOM     26  CA  THR    26      69.697  74.555  78.021  1.00  0.00              
ATOM     27  CA  LEU    27      71.377  72.109  80.267  1.00  0.00              
ATOM     28  CA  PRO    28      69.700  73.520  83.194  1.00  0.00              
ATOM     29  CA  VAL    29      72.174  76.454  84.270  1.00  0.00              
ATOM     30  CA  ASP    30      72.558  76.817  87.894  1.00  0.00              
ATOM     31  CA  PRO    31      71.772  80.403  88.425  1.00  0.00              
ATOM     32  CA  HIS    32      70.786  81.012  92.054  1.00  0.00              
ATOM     33  CA  LEU    33      68.971  78.161  92.479  1.00  0.00              
ATOM     34  CA  GLU    34      65.585  78.466  93.348  1.00  0.00              
ATOM     35  CA  ILE    35      62.912  75.924  93.625  1.00  0.00              
ATOM     36  CA  THR    36      60.038  76.993  95.133  1.00  0.00              
ATOM     37  CA  GLU    37      59.980  79.796  92.347  1.00  0.00              
ATOM     38  CA  ILE    38      60.372  77.475  89.450  1.00  0.00              
ATOM     39  CA  ALA    39      57.473  75.212  90.779  1.00  0.00              
ATOM     40  CA  ASP    40      55.129  78.142  91.283  1.00  0.00              
ATOM     41  CA  ARG    41      55.536  79.631  87.482  1.00  0.00              
ATOM     42  CA  THR    42      54.642  76.416  86.314  1.00  0.00              
ATOM     43  CA  LEU    43      52.235  75.575  88.309  1.00  0.00              
ATOM     44  CA  ARG    44      50.161  78.542  87.878  1.00  0.00              
ATOM     45  CA  ALA    45      49.655  77.902  84.224  1.00  0.00              
ATOM     46  CA  GLY    46      49.501  74.171  83.639  1.00  0.00              
ATOM     47  CA  GLY    47      52.936  73.181  83.128  1.00  0.00              
ATOM     48  CA  PRO    48      55.267  70.704  84.902  1.00  0.00              
ATOM     49  CA  ALA    49      56.591  71.303  88.340  1.00  0.00              
ATOM     50  CA  LEU    50      60.278  70.495  89.359  1.00  0.00              
ATOM     51  CA  LEU    51      60.740  70.979  92.945  1.00  0.00              
ATOM     52  CA  PHE    52      64.200  71.615  95.047  1.00  0.00              
ATOM     53  CA  GLU    53      64.889  71.417  98.513  1.00  0.00              
ATOM     54  CA  ASN    54      67.952  73.329  98.945  1.00  0.00              
ATOM     55  CA  PRO    55      68.969  75.657  96.081  1.00  0.00              
ATOM     56  CA  LYS    56      72.740  75.943  96.672  1.00  0.00              
ATOM     57  CA  GLY    57      72.450  72.299  96.457  1.00  0.00              
ATOM     58  CA  TYR    58      71.564  72.003  93.245  1.00  0.00              
ATOM     59  CA  SER    59      68.521  69.174  92.942  1.00  0.00              
ATOM     60  CA  MET    60      66.720  70.510  90.382  1.00  0.00              
ATOM     61  CA  PRO    61      63.078  70.532  89.036  1.00  0.00              
ATOM     62  CA  VAL    62      62.640  70.824  85.163  1.00  0.00              
ATOM     63  CA  LEU    63      60.278  72.310  83.327  1.00  0.00              
ATOM     64  CA  CYS    64      61.046  73.080  80.053  1.00  0.00              
ATOM     65  CA  ASN    65      58.960  75.366  78.117  1.00  0.00              
ATOM     66  CA  LEU    66      57.745  76.752  81.434  1.00  0.00              
ATOM     67  CA  PHE    67      61.539  77.229  82.922  1.00  0.00              
ATOM     68  CA  GLY    68      63.724  78.226  79.988  1.00  0.00              
ATOM     69  CA  THR    69      61.778  80.429  78.334  1.00  0.00              
ATOM     70  CA  PRO    70      60.642  81.318  74.919  1.00  0.00              
ATOM     71  CA  LYS    71      62.065  84.654  75.414  1.00  0.00              
ATOM     72  CA  ARG    72      65.568  83.403  76.489  1.00  0.00              
ATOM     73  CA  VAL    73      65.764  81.075  73.429  1.00  0.00              
ATOM     74  CA  ALA    74      65.061  83.719  71.204  1.00  0.00              
ATOM     75  CA  MET    75      67.794  85.966  72.487  1.00  0.00              
ATOM     76  CA  GLY    76      70.657  83.235  73.039  1.00  0.00              
ATOM     77  CA  MET    77      70.277  81.949  69.248  1.00  0.00              
ATOM     78  CA  GLY    78      69.802  85.229  67.703  1.00  0.00              
ATOM     79  CA  GLN    79      65.826  84.490  66.154  1.00  0.00              
ATOM     80  CA  GLU    80      63.119  85.961  66.012  1.00  0.00              
ATOM     81  CA  ASP    81      61.062  83.285  66.574  1.00  0.00              
ATOM     82  CA  VAL    82      60.826  80.040  67.550  1.00  0.00              
ATOM     83  CA  SER    83      60.924  77.800  64.993  1.00  0.00              
ATOM     84  CA  ALA    84      63.482  79.527  62.751  1.00  0.00              
ATOM     85  CA  LEU    85      65.884  79.242  65.262  1.00  0.00              
ATOM     86  CA  ARG    86      65.533  75.428  66.012  1.00  0.00              
ATOM     87  CA  GLU    87      65.396  74.485  62.631  1.00  0.00              
ATOM     88  CA  VAL    88      68.658  76.052  61.898  1.00  0.00              
ATOM     89  CA  GLY    89      70.430  74.867  64.769  1.00  0.00              
ATOM     90  CA  LYS    90      69.269  71.607  64.386  1.00  0.00              
ATOM     91  CA  LEU    91      70.654  71.383  60.637  1.00  0.00              
ATOM     92  CA  LEU    92      73.631  73.145  61.248  1.00  0.00              
ATOM     93  CA  ALA    93      74.602  71.268  64.243  1.00  0.00              
ATOM     94  CA  PHE    94      74.273  68.566  61.669  1.00  0.00              
ATOM     95  CA  LEU    95      76.020  69.535  58.859  1.00  0.00              
ATOM     96  CA  LYS    96      78.903  70.866  60.416  1.00  0.00              
ATOM    314  CA  ASP   314      96.478  43.315  86.897  1.00  0.00              
ATOM    315  CA  ALA   315      94.098  42.393  84.633  1.00  0.00              
ATOM    316  CA  ILE   316      93.332  38.852  83.734  1.00  0.00              
ATOM    317  CA  TYR   317      92.199  38.425  79.764  1.00  0.00              
ATOM    318  CA  HIS   318      91.183  35.207  78.930  1.00  0.00              
ATOM    319  CA  SER   319      91.184  33.493  75.558  1.00  0.00              
ATOM    320  CA  THR   320      89.180  30.877  74.989  1.00  0.00              
ATOM    321  CA  TYR   321      89.227  29.433  71.892  1.00  0.00              
ATOM    322  CA  THR   322      87.509  27.321  69.095  1.00  0.00              
ATOM    323  CA  GLY   323      89.302  25.330  66.286  1.00  0.00              
ATOM    324  CA  ARG   324      86.017  25.453  64.073  1.00  0.00              
ATOM    325  CA  PRO   325      86.194  26.014  60.435  1.00  0.00              
ATOM    326  CA  PRO   326      85.014  28.562  58.782  1.00  0.00              
ATOM    327  CA  ASP   327      82.976  26.577  56.757  1.00  0.00              
ATOM    328  CA  GLU   328      80.464  24.936  58.770  1.00  0.00              
ATOM    329  CA  PRO   329      79.041  27.119  61.221  1.00  0.00              
ATOM    330  CA  ALA   330      75.810  28.154  60.990  1.00  0.00              
ATOM    331  CA  VAL   331      75.018  29.130  64.324  1.00  0.00              
ATOM    332  CA  LEU   332      74.912  32.613  65.994  1.00  0.00              
ATOM    333  CA  GLY   333      73.018  32.313  69.115  1.00  0.00              
ATOM    334  CA  VAL   334      71.339  34.843  71.230  1.00  0.00              
ATOM    335  CA  ALA   335      70.307  33.262  74.500  1.00  0.00              
ATOM    336  CA  LEU   336      73.230  31.187  74.418  1.00  0.00              
ATOM    337  CA  ASN   337      76.083  33.650  74.149  1.00  0.00              
ATOM    338  CA  GLU   338      74.391  35.029  77.023  1.00  0.00              
ATOM    339  CA  VAL   339      74.107  32.127  79.148  1.00  0.00              
ATOM    340  CA  PHE   340      77.570  31.300  78.886  1.00  0.00              
ATOM    341  CA  VAL   341      78.444  34.926  78.732  1.00  0.00              
ATOM    342  CA  PRO   342      76.997  36.365  81.198  1.00  0.00              
ATOM    343  CA  ILE   343      77.939  33.716  83.505  1.00  0.00              
ATOM    344  CA  LEU   344      81.361  34.171  82.761  1.00  0.00              
ATOM    345  CA  GLN   345      81.306  38.040  83.452  1.00  0.00              
ATOM    346  CA  LYS   346      79.848  37.604  87.015  1.00  0.00              
ATOM    347  CA  GLN   347      82.269  35.639  88.468  1.00  0.00              
TER                                                                             
END
