
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms    5 (   25),  selected    5 , name T0351TS102_5
# Molecule2: number of CA atoms   56 (  935),  selected   56 , name T0351.pdb
# PARAMETERS: T0351TS102_5.T0351.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      M       1           -
LGA    -       -      I       2           -
LGA    -       -      L       3           -
LGA    H     113      Y       4          0.394
LGA    H     114      D       5          0.766
LGA    H     115      A       6          1.205
LGA    -       -      I       7           -
LGA    -       -      M       8           -
LGA    H     116      Y       9          0.852
LGA    H     117      K      10          0.783
LGA    -       -      Y      11           -
LGA    -       -      P      12           -
LGA    -       -      N      13           -
LGA    -       -      A      14           -
LGA    -       -      V      15           -
LGA    -       -      S      16           -
LGA    -       -      R      17           -
LGA    -       -      K      18           -
LGA    -       -      D      19           -
LGA    -       -      F      20           -
LGA    -       -      E      21           -
LGA    -       -      L      22           -
LGA    -       -      R      23           -
LGA    -       -      N      24           -
LGA    -       -      D      25           -
LGA    -       -      G      26           -
LGA    -       -      N      27           -
LGA    -       -      G      28           -
LGA    -       -      S      29           -
LGA    -       -      Y      30           -
LGA    -       -      I      31           -
LGA    -       -      E      32           -
LGA    -       -      K      33           -
LGA    -       -      W      34           -
LGA    -       -      N      35           -
LGA    -       -      L      36           -
LGA    -       -      R      37           -
LGA    -       -      A      38           -
LGA    -       -      P      39           -
LGA    -       -      L      40           -
LGA    -       -      P      41           -
LGA    -       -      T      42           -
LGA    -       -      Q      43           -
LGA    -       -      A      44           -
LGA    -       -      E      45           -
LGA    -       -      L      46           -
LGA    -       -      E      47           -
LGA    -       -      T      48           -
LGA    -       -      W      49           -
LGA    -       -      W      50           -
LGA    -       -      E      51           -
LGA    -       -      E      52           -
LGA    -       -      L      53           -
LGA    -       -      Q      54           -
LGA    -       -      K      55           -
LGA    -       -      N      56           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)    5   56    5.0      5    0.84     0.00      8.788     0.531

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.549764 * X  +   0.475965 * Y  +  -0.686453 * Z  +  23.664425
  Y_new =   0.670026 * X  +   0.742008 * Y  +  -0.022124 * Z  + -97.976830
  Z_new =   0.498823 * X  +  -0.472104 * Y  +  -0.726838 * Z  +  31.537409 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.565547    0.576046  [ DEG:  -146.9950     33.0050 ]
  Theta =  -0.522241   -2.619352  [ DEG:   -29.9222   -150.0778 ]
  Phi   =   2.257919   -0.883673  [ DEG:   129.3692    -50.6308 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0351TS102_5                                  
REMARK     2: T0351.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0351TS102_5.T0351.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:    5   56   5.0    5   0.84    0.00   8.788
REMARK  ---------------------------------------------------------- 
MOLECULE T0351TS102_5
PFRMAT TS
TARGET T0351
MODEL 5
PARENT 1zx8_A
ATOM      1  N   HIS   113      -3.470   2.558   6.023  1.00  1.00
ATOM      2  CA  HIS   113      -2.478   1.774   5.234  1.00  1.00
ATOM      3  C   HIS   113      -1.649   0.865   6.146  1.00  1.00
ATOM      4  O   HIS   113      -1.076   1.340   7.144  1.00  1.00
ATOM      5  CB  HIS   113      -1.540   2.716   4.449  1.00  1.00
ATOM      6  N   HIS   114      -1.643  -0.432   5.830  1.00  1.00
ATOM      7  CA  HIS   114      -0.602  -1.370   6.278  1.00  1.00
ATOM      8  C   HIS   114      -0.037  -2.030   5.008  1.00  1.00
ATOM      9  O   HIS   114      -0.136  -3.251   4.830  1.00  1.00
ATOM     10  CB  HIS   114      -1.143  -2.467   7.216  1.00  1.00
ATOM     11  N   HIS   115       0.516  -1.189   4.130  1.00  1.00
ATOM     12  CA  HIS   115       1.037  -1.590   2.811  1.00  1.00
ATOM     13  C   HIS   115       2.533  -1.271   2.736  1.00  1.00
ATOM     14  O   HIS   115       3.000  -0.367   3.403  1.00  1.00
ATOM     15  CB  HIS   115       0.282  -0.847   1.699  1.00  1.00
ATOM     16  N   HIS   116       3.274  -2.028   1.944  1.00  1.00
ATOM     17  CA  HIS   116       4.688  -1.803   1.796  1.00  1.00
ATOM     18  C   HIS   116       5.037  -1.825   0.332  1.00  1.00
ATOM     19  O   HIS   116       4.584  -2.716  -0.392  1.00  1.00
ATOM     20  CB  HIS   116       5.494  -2.844   2.598  1.00  1.00
ATOM     21  N   HIS   117       5.841  -0.846  -0.087  1.00  1.00
ATOM     22  CA  HIS   117       6.297  -0.721  -1.461  1.00  1.00
ATOM     23  C   HIS   117       7.631  -1.441  -1.627  1.00  1.00
ATOM     24  O   HIS   117       8.564  -1.282  -0.835  1.00  1.00
ATOM     25  CB  HIS   117       6.380   0.757  -1.867  1.00  1.00
TER
END
