
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  102 (  102),  selected  102 , name T0327TS168_1
# Molecule2: number of CA atoms   73 ( 1169),  selected   73 , name T0327.pdb
# PARAMETERS: T0327TS168_1.T0327.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      -       -           -
LGA    N       2      -       -           -
LGA    K       3      -       -           -
LGA    D       4      -       -           -
LGA    K       5      -       -           -
LGA    L       6      -       -           -
LGA    R       7      -       -           -
LGA    Y       8      -       -           -
LGA    A       9      -       -           -
LGA    I      10      -       -           -
LGA    L      11      -       -           -
LGA    K      12      -       -           -
LGA    E      13      -       -           -
LGA    I      14      -       -           -
LGA    F      15      -       -           -
LGA    E      16      -       -           -
LGA    G      17      -       -           -
LGA    N      18      -       -           -
LGA    T      19      -       -           -
LGA    P      20      -       -           -
LGA    L      21      -       -           -
LGA    S      22      -       -           -
LGA    E      23      -       -           -
LGA    N      24      -       -           -
LGA    D      25      -       -           -
LGA    I      26      -       -           -
LGA    G      27      -       -           -
LGA    V      28      -       -           -
LGA    T      29      -       -           -
LGA    E      30      -       -           -
LGA    D      31      -       -           -
LGA    Q      32      -       -           -
LGA    F      33      -       -           -
LGA    D      34      -       -           -
LGA    D      35      -       -           -
LGA    A      36      -       -           -
LGA    V      37      -       -           -
LGA    N      38      -       -           -
LGA    F      39      -       -           -
LGA    L      40      K       5          2.365
LGA    K      41      -       -           -
LGA    R      42      -       -           -
LGA    E      43      -       -           -
LGA    G      44      -       -           -
LGA    Y      45      L       6          2.469
LGA    I      46      R       7          4.176
LGA    I      47      Y       8          3.669
LGA    G      48      A       9          1.538
LGA    -       -      I      10           -
LGA    -       -      L      11           -
LGA    V      49      K      12          1.829
LGA    -       -      E      13           -
LGA    -       -      I      14           -
LGA    H      50      F      15          2.482
LGA    Y      51      E      16          2.903
LGA    S      52      G      17           -
LGA    -       -      N      18           -
LGA    D      53      T      19          4.630
LGA    D      54      -       -           -
LGA    R      55      -       -           -
LGA    P      56      -       -           -
LGA    H      57      -       -           -
LGA    L      58      P      20           #
LGA    Y      59      -       -           -
LGA    K      60      -       -           -
LGA    L      61      L      21           #
LGA    G      62      S      22          3.978
LGA    P      63      E      23          4.789
LGA    E      64      N      24          3.579
LGA    -       -      D      25           -
LGA    -       -      I      26           -
LGA    -       -      G      27           -
LGA    L      65      V      28          2.663
LGA    T      66      T      29          1.674
LGA    E      67      E      30          2.393
LGA    K      68      D      31          3.778
LGA    -       -      Q      32           -
LGA    G      69      F      33          2.466
LGA    E      70      D      34          2.058
LGA    N      71      D      35          2.274
LGA    Y      72      A      36          2.661
LGA    L      73      V      37          1.324
LGA    K      74      N      38          2.353
LGA    E      75      F      39          3.856
LGA    N      76      L      40          4.126
LGA    G      77      K      41          3.161
LGA    -       -      R      42           -
LGA    -       -      E      43           -
LGA    -       -      G      44           -
LGA    T      78      Y      45          2.226
LGA    W      79      I      46          2.170
LGA    -       -      I      47           -
LGA    -       -      G      48           -
LGA    -       -      V      49           -
LGA    -       -      H      50           -
LGA    -       -      Y      51           -
LGA    -       -      S      52           -
LGA    -       -      D      53           -
LGA    -       -      D      54           -
LGA    -       -      R      55           -
LGA    -       -      P      56           -
LGA    -       -      H      57           -
LGA    -       -      L      58           -
LGA    -       -      Y      59           -
LGA    -       -      K      60           -
LGA    -       -      L      61           -
LGA    -       -      G      62           -
LGA    -       -      P      63           -
LGA    -       -      E      64           -
LGA    -       -      L      65           -
LGA    -       -      T      66           -
LGA    S      80      E      67          4.299
LGA    K      81      K      68          4.733
LGA    A      82      G      69          3.469
LGA    Y      83      E      70          1.130
LGA    K      84      N      71          2.343
LGA    T      85      Y      72          3.183
LGA    I      86      L      73          2.348
LGA    K      87      K      74          1.560
LGA    E      88      E      75          2.129
LGA    -       -      N      76           -
LGA    I      89      G      77          1.914
LGA    K      90      -       -           -
LGA    D      91      -       -           -
LGA    W      92      -       -           -
LGA    I      93      -       -           -
LGA    K      94      -       -           -
LGA    L      95      -       -           -
LGA    E      96      -       -           -
LGA    H      97      -       -           -
LGA    H      98      -       -           -
LGA    H      99      -       -           -
LGA    H     100      -       -           -
LGA    H     101      -       -           -
LGA    H     102      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  102   73    5.0     37    3.00    13.51     30.925     1.193

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.128101 * X  +   0.991692 * Y  +   0.011737 * Z  +  -9.412854
  Y_new =   0.913884 * X  +   0.113437 * Y  +   0.389804 * Z  +  -1.977136
  Z_new =   0.385234 * X  +   0.060661 * Y  +  -0.920823 * Z  +   0.964718 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   3.075811   -0.065781  [ DEG:   176.2310     -3.7690 ]
  Theta =  -0.395462   -2.746131  [ DEG:   -22.6583   -157.3417 ]
  Phi   =   1.710061   -1.431532  [ DEG:    97.9793    -82.0207 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0327TS168_1                                  
REMARK     2: T0327.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0327TS168_1.T0327.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  102   73   5.0   37   3.00   13.51  30.925
REMARK  ---------------------------------------------------------- 
MOLECULE T0327TS168_1
PFRMAT TS
TARGET T0327
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1     -27.853  -2.244   6.699  1.00 25.00           C
ATOM      2  CA  ASN     2     -28.314  -5.804   7.924  1.00 25.00           C
ATOM      3  CA  LYS     3     -25.457  -7.215   5.767  1.00 25.00           C
ATOM      4  CA  ASP     4     -22.103  -5.504   5.237  1.00 25.00           C
ATOM      5  CA  LYS     5     -21.317  -6.591   8.825  1.00 25.00           C
ATOM      6  CA  LEU     6     -17.798  -7.660   7.756  1.00 25.00           C
ATOM      7  CA  ARG     7     -17.266  -4.278   6.039  1.00 25.00           C
ATOM      8  CA  TYR     8     -18.430  -2.462   9.203  1.00 25.00           C
ATOM      9  CA  ALA     9     -16.018  -4.551  11.320  1.00 25.00           C
ATOM     10  CA  ILE    10     -13.152  -3.720   8.919  1.00 25.00           C
ATOM     11  CA  LEU    11     -14.020   0.004   9.136  1.00 25.00           C
ATOM     12  CA  LYS    12     -14.044  -0.198  12.961  1.00 25.00           C
ATOM     13  CA  GLU    13     -10.627  -1.928  12.915  1.00 25.00           C
ATOM     14  CA  ILE    14      -9.249   0.798  10.606  1.00 25.00           C
ATOM     15  CA  PHE    15     -10.604   3.505  12.952  1.00 25.00           C
ATOM     16  CA  GLU    16      -8.972   1.761  15.945  1.00 25.00           C
ATOM     17  CA  GLY    17     -11.924   2.011  18.333  1.00 25.00           C
ATOM     18  CA  ASN    18     -12.338  -1.693  17.952  1.00 25.00           C
ATOM     19  CA  THR    19     -12.531  -4.867  20.005  1.00 25.00           C
ATOM     20  CA  PRO    20     -12.132  -8.661  19.652  1.00 25.00           C
ATOM     21  CA  LEU    21     -12.621 -11.902  17.686  1.00 25.00           C
ATOM     22  CA  SER    22     -11.542 -15.281  16.161  1.00 25.00           C
ATOM     23  CA  GLU    23     -11.348 -17.791  13.298  1.00 25.00           C
ATOM     24  CA  ASN    24     -14.478 -17.434  11.163  1.00 25.00           C
ATOM     25  CA  ASP    25     -13.654 -18.721   7.702  1.00 25.00           C
ATOM     26  CA  ILE    26     -15.734 -17.196   4.886  1.00 25.00           C
ATOM     27  CA  GLY    27     -14.815 -15.717   1.519  1.00 25.00           C
ATOM     28  CA  VAL    28     -13.511 -12.144   1.884  1.00 25.00           C
ATOM     29  CA  THR    29     -10.373 -12.746  -0.265  1.00 25.00           C
ATOM     30  CA  GLU    30     -11.276 -10.788  -3.441  1.00 25.00           C
ATOM     31  CA  ASP    31     -14.506  -8.982  -4.423  1.00 25.00           C
ATOM     32  CA  GLN    32     -15.239  -8.238  -0.738  1.00 25.00           C
ATOM     33  CA  PHE    33     -11.693  -6.863  -0.286  1.00 25.00           C
ATOM     34  CA  ASP    34     -12.131  -4.646  -3.377  1.00 25.00           C
ATOM     35  CA  ASP    35     -15.465  -3.350  -2.006  1.00 25.00           C
ATOM     36  CA  ALA    36     -13.808  -2.578   1.360  1.00 25.00           C
ATOM     37  CA  VAL    37     -10.990  -0.702  -0.429  1.00 25.00           C
ATOM     38  CA  ASN    38     -13.565   1.313  -2.423  1.00 25.00           C
ATOM     39  CA  PHE    39     -15.429   2.177   0.810  1.00 25.00           C
ATOM     40  CA  LEU    40     -12.146   3.300   2.431  1.00 25.00           C
ATOM     41  CA  LYS    41     -11.362   5.487  -0.614  1.00 25.00           C
ATOM     42  CA  ARG    42     -14.857   7.043  -0.427  1.00 25.00           C
ATOM     43  CA  GLU    43     -13.517   8.555   2.808  1.00 25.00           C
ATOM     44  CA  GLY    44      -9.753   8.916   3.496  1.00 25.00           C
ATOM     45  CA  TYR    45      -8.015   5.740   4.664  1.00 25.00           C
ATOM     46  CA  ILE    46      -9.015   2.084   5.053  1.00 25.00           C
ATOM     47  CA  ILE    47      -6.469   1.419   2.346  1.00 25.00           C
ATOM     48  CA  GLY    48      -5.436   3.154  -0.829  1.00 25.00           C
ATOM     49  CA  VAL    49      -2.810   3.064  -3.561  1.00 25.00           C
ATOM     50  CA  HIS    50      -0.492   3.790  -6.445  1.00 25.00           C
ATOM     51  CA  TYR    51       1.997   2.523  -9.086  1.00 25.00           C
ATOM     52  CA  SER    52       2.676  -0.193  -6.460  1.00 25.00           C
ATOM     53  CA  ASP    53       6.291   0.525  -5.519  1.00 25.00           C
ATOM     54  CA  ASP    54       7.091  -3.200  -5.936  1.00 25.00           C
ATOM     55  CA  ARG    55       6.083  -6.488  -4.294  1.00 25.00           C
ATOM     56  CA  PRO    56       6.641  -5.362  -0.734  1.00 25.00           C
ATOM     57  CA  HIS    57       7.714  -1.683  -1.139  1.00 25.00           C
ATOM     58  CA  LEU    58       5.009   0.073   0.868  1.00 25.00           C
ATOM     59  CA  TYR    59       3.037   3.063  -0.427  1.00 25.00           C
ATOM     60  CA  LYS    60      -0.378   4.223   0.931  1.00 25.00           C
ATOM     61  CA  LEU    61      -1.858   7.711   0.522  1.00 25.00           C
ATOM     62  CA  GLY    62       1.675   9.069   0.484  1.00 25.00           C
ATOM     63  CA  PRO    63       0.300  12.292   1.925  1.00 25.00           C
ATOM     64  CA  GLU    64      -2.096  11.251   4.673  1.00 25.00           C
ATOM     65  CA  LEU    65      -1.983   7.584   5.595  1.00 25.00           C
ATOM     66  CA  THR    66      -1.693   8.234   9.341  1.00 25.00           C
ATOM     67  CA  GLU    67       0.859   5.569  10.146  1.00 25.00           C
ATOM     68  CA  LYS    68      -2.071   3.103  10.161  1.00 25.00           C
ATOM     69  CA  GLY    69      -1.554   2.427   6.427  1.00 25.00           C
ATOM     70  CA  GLU    70       2.178   1.816   7.030  1.00 25.00           C
ATOM     71  CA  ASN    71       1.348  -0.609   9.876  1.00 25.00           C
ATOM     72  CA  TYR    72      -1.114  -2.468   7.607  1.00 25.00           C
ATOM     73  CA  LEU    73       1.554  -2.711   4.870  1.00 25.00           C
ATOM     74  CA  LYS    74       4.071  -4.079   7.411  1.00 25.00           C
ATOM     75  CA  GLU    75       1.511  -6.674   8.586  1.00 25.00           C
ATOM     76  CA  ASN    76       1.220  -8.016   4.987  1.00 25.00           C
ATOM     77  CA  GLY    77       1.545  -9.609   1.563  1.00 25.00           C
ATOM     78  CA  THR    78      -0.157  -6.437   0.221  1.00 25.00           C
ATOM     79  CA  TRP    79       0.947  -5.967  -3.416  1.00 25.00           C
ATOM     80  CA  SER    80      -1.739  -8.438  -4.576  1.00 25.00           C
ATOM     81  CA  LYS    81      -4.384  -6.554  -2.547  1.00 25.00           C
ATOM     82  CA  ALA    82      -3.253  -3.241  -4.101  1.00 25.00           C
ATOM     83  CA  TYR    83      -3.475  -4.780  -7.601  1.00 25.00           C
ATOM     84  CA  LYS    84      -7.003  -6.062  -6.841  1.00 25.00           C
ATOM     85  CA  THR    85      -8.030  -2.582  -5.615  1.00 25.00           C
ATOM     86  CA  ILE    86      -6.619  -1.013  -8.811  1.00 25.00           C
ATOM     87  CA  LYS    87      -8.556  -3.542 -10.937  1.00 25.00           C
ATOM     88  CA  GLU    88     -11.768  -2.738  -9.012  1.00 25.00           C
ATOM     89  CA  ILE    89     -11.189   1.007  -9.564  1.00 25.00           C
ATOM     90  CA  LYS    90     -10.652   0.398 -13.307  1.00 25.00           C
ATOM     91  CA  ASP    91     -13.891  -1.640 -13.465  1.00 25.00           C
ATOM     92  CA  TRP    92     -15.777   1.173 -11.678  1.00 25.00           C
ATOM     93  CA  ILE    93     -14.357   3.730 -14.150  1.00 25.00           C
ATOM     94  CA  LYS    94     -15.438   1.525 -17.089  1.00 25.00           C
ATOM     95  CA  LEU    95     -18.241   3.321 -19.012  1.00 25.00           C
ATOM     96  CA  GLU    96     -20.463   0.526 -20.225  1.00 25.00           C
ATOM     97  CA  HIS    97     -23.921  -0.839 -19.294  1.00 25.00           C
ATOM     98  CA  HIS    98     -25.822   2.022 -17.740  1.00 25.00           C
ATOM     99  CA  HIS    99     -27.649   2.391 -14.444  1.00 25.00           C
ATOM    100  CA  HIS   100     -28.886  -1.224 -14.407  1.00 25.00           C
ATOM    101  CA  HIS   101     -29.920  -0.479 -10.790  1.00 25.00           C
ATOM    102  CA  HIS   102     -30.653  -0.505  -7.035  1.00 25.00           C
TER
END
