
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  157 (  157),  selected  157 , name T0322TS168_3
# Molecule2: number of CA atoms  142 ( 1089),  selected  142 , name T0322.pdb
# PARAMETERS: T0322TS168_3.T0322.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      A      12           -
LGA    S       2      I      13           -
LGA    D       3      P      14           -
LGA    D       4      E      15           -
LGA    L       5      G      16           -
LGA    T       6      F      17           -
LGA    D       7      S      18           -
LGA    A       8      Q      19           -
LGA    Q       9      L      20           -
LGA    T      10      -       -           -
LGA    A      11      -       -           -
LGA    A      12      -       -           -
LGA    I      13      -       -           -
LGA    P      14      -       -           -
LGA    E      15      -       -           -
LGA    G      16      -       -           -
LGA    F      17      -       -           -
LGA    S      18      -       -           -
LGA    Q      19      -       -           -
LGA    L      20      -       -           -
LGA    N      21      -       -           -
LGA    W      22      -       -           -
LGA    S      23      N      21           #
LGA    R      24      W      22          2.133
LGA    G      25      S      23          1.979
LGA    F      26      R      24          4.852
LGA    -       -      G      25           -
LGA    -       -      F      26           -
LGA    G      27      G      27          4.040
LGA    R      28      -       -           -
LGA    Q      29      R      28          1.008
LGA    I      30      Q      29          3.874
LGA    -       -      I      30           -
LGA    G      31      G      31          1.624
LGA    -       -      P      32           -
LGA    P      32      L      33          3.183
LGA    L      33      F      34          2.206
LGA    F      34      E      35          1.417
LGA    E      35      H      36          3.121
LGA    -       -      R      37           -
LGA    -       -      E      38           -
LGA    -       -      G      39           -
LGA    H      36      P      40           #
LGA    R      37      G      41          2.046
LGA    E      38      Q      42          5.525
LGA    G      39      -       -           -
LGA    P      40      -       -           -
LGA    G      41      -       -           -
LGA    Q      42      -       -           -
LGA    A      43      A      43          2.173
LGA    R      44      R      44          2.169
LGA    L      45      L      45          2.246
LGA    A      46      A      46          1.005
LGA    F      47      F      47          3.168
LGA    R      48      R      48          2.405
LGA    V      49      V      49          1.432
LGA    E      50      E      50          1.241
LGA    E      51      E      51          2.903
LGA    H      52      H      52          1.909
LGA    H      53      H      53          1.353
LGA    T      54      T      54          1.726
LGA    N      55      N      55          2.276
LGA    G      56      G      56          3.413
LGA    L      57      L      57          1.621
LGA    G      58      G      58          2.373
LGA    N      59      N      59          1.656
LGA    C      60      C      60          2.023
LGA    H      61      H      61          0.844
LGA    G      62      G      62          1.427
LGA    G      63      G      63          1.197
LGA    M      64      M      64          1.231
LGA    L      65      L      65          1.347
LGA    M      66      M      66          1.038
LGA    S      67      S      67          0.947
LGA    F      68      F      68          1.258
LGA    A      69      A      69          1.305
LGA    D      70      D      70          0.903
LGA    M      71      M      71          0.810
LGA    A      72      A      72          2.015
LGA    W      73      W      73          2.891
LGA    G      74      G      74          2.765
LGA    R      75      R      75          1.946
LGA    I      76      I      76          1.233
LGA    I      77      I      77          1.321
LGA    S      78      S      78          1.869
LGA    L      79      L      79          2.211
LGA    Q      80      Q      80          3.043
LGA    K      81      K      81          4.810
LGA    S      82      S      82           -
LGA    Y      83      -       -           -
LGA    S      84      Y      83          2.294
LGA    W      85      S      84          2.291
LGA    V      86      W      85          2.718
LGA    T      87      V      86          2.339
LGA    V      88      T      87          1.512
LGA    R      89      V      88          2.987
LGA    -       -      R      89           -
LGA    L      90      L      90          2.371
LGA    M      91      M      91          2.305
LGA    C      92      C      92          2.729
LGA    D      93      D      93          3.049
LGA    F      94      F      94          1.956
LGA    L      95      L      95          2.766
LGA    S      96      S      96          1.524
LGA    G      97      G      97          1.191
LGA    A      98      A      98          2.253
LGA    K      99      K      99          2.652
LGA    L     100      L     100          1.470
LGA    G     101      G     101          1.743
LGA    D     102      D     102          1.491
LGA    W     103      W     103          1.145
LGA    V     104      V     104          2.092
LGA    E     105      E     105          2.685
LGA    G     106      G     106          2.448
LGA    E     107      E     107          1.733
LGA    G     108      G     108          1.722
LGA    E     109      E     109          2.648
LGA    L     110      L     110          2.545
LGA    I     111      I     111          2.068
LGA    S     112      S     112          1.720
LGA    E     113      E     113          2.191
LGA    E     114      E     114          3.777
LGA    D     115      D     115          5.165
LGA    -       -      M     116           -
LGA    M     116      L     117          2.571
LGA    L     117      F     118          1.342
LGA    F     118      T     119           #
LGA    T     119      V     120          0.505
LGA    V     120      R     121          1.079
LGA    R     121      G     122          1.369
LGA    G     122      R     123          0.914
LGA    R     123      I     124          2.319
LGA    I     124      W     125          3.316
LGA    W     125      A     126          1.795
LGA    A     126      G     127          2.857
LGA    G     127      -       -           -
LGA    E     128      E     128          1.233
LGA    R     129      R     129          3.485
LGA    T     130      T     130          0.999
LGA    L     131      L     131          1.335
LGA    I     132      I     132          1.460
LGA    T     133      T     133          2.304
LGA    G     134      G     134          4.673
LGA    T     135      T     135          3.420
LGA    G     136      G     136          1.656
LGA    V     137      V     137          3.937
LGA    F     138      F     138          0.933
LGA    K     139      K     139          0.881
LGA    A     140      A     140          2.932
LGA    L     141      -       -           -
LGA    S     142      -       -           -
LGA    A     143      -       -           -
LGA    R     144      -       -           -
LGA    K     145      -       -           -
LGA    P     146      -       -           -
LGA    R     147      L     141           #
LGA    P     148      S     142          3.967
LGA    -       -      A     143           -
LGA    G     149      R     144          2.367
LGA    E     150      K     145          5.192
LGA    L     151      P     146           #
LGA    -       -      R     147           -
LGA    -       -      P     148           -
LGA    -       -      G     149           -
LGA    A     152      E     150           #
LGA    -       -      L     151           -
LGA    Y     153      A     152          4.290
LGA    K     154      Y     153          0.788
LGA    E     155      -       -           -
LGA    E     156      -       -           -
LGA    A     157      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  157  142    5.0    112    2.46    71.43     52.399     4.380

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.946170 * X  +  -0.227809 * Y  +   0.229923 * Z  +  10.958018
  Y_new =  -0.315640 * X  +  -0.806669 * Y  +   0.499656 * Z  +  -6.324945
  Z_new =   0.071646 * X  +  -0.545333 * Y  +  -0.835152 * Z  + -14.514540 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.563129    0.578463  [ DEG:  -146.8565     33.1435 ]
  Theta =  -0.071707   -3.069885  [ DEG:    -4.1085   -175.8915 ]
  Phi   =  -0.321988    2.819605  [ DEG:   -18.4486    161.5515 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0322TS168_3                                  
REMARK     2: T0322.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0322TS168_3.T0322.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  157  142   5.0  112   2.46   71.43  52.399
REMARK  ---------------------------------------------------------- 
MOLECULE T0322TS168_3
PFRMAT TS
TARGET T0322
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      40.222   1.831 -12.594  1.00 25.00           C
ATOM      2  CA  SER     2      41.537   3.644  -9.536  1.00 25.00           C
ATOM      3  CA  ASP     3      39.208   5.513  -7.238  1.00 25.00           C
ATOM      4  CA  ASP     4      40.345   3.029  -4.577  1.00 25.00           C
ATOM      5  CA  LEU     5      37.938   1.137  -2.332  1.00 25.00           C
ATOM      6  CA  THR     6      39.447   3.389   0.368  1.00 25.00           C
ATOM      7  CA  ASP     7      38.273   1.458   3.350  1.00 25.00           C
ATOM      8  CA  ALA     8      34.639   2.058   4.396  1.00 25.00           C
ATOM      9  CA  GLN     9      33.409   0.308   1.221  1.00 25.00           C
ATOM     10  CA  THR    10      35.714  -2.665   1.935  1.00 25.00           C
ATOM     11  CA  ALA    11      34.537  -5.812   3.606  1.00 25.00           C
ATOM     12  CA  ALA    12      31.297  -6.201   5.529  1.00 25.00           C
ATOM     13  CA  ILE    13      29.793  -2.818   6.394  1.00 25.00           C
ATOM     14  CA  PRO    14      28.846  -4.113   9.855  1.00 25.00           C
ATOM     15  CA  GLU    15      25.206  -3.830  10.861  1.00 25.00           C
ATOM     16  CA  GLY    16      23.568  -6.947   9.424  1.00 25.00           C
ATOM     17  CA  PHE    17      21.609  -9.068   7.003  1.00 25.00           C
ATOM     18  CA  SER    18      18.701  -9.419   9.403  1.00 25.00           C
ATOM     19  CA  GLN    19      15.067  -8.435   9.117  1.00 25.00           C
ATOM     20  CA  LEU    20      14.718  -5.711   6.436  1.00 25.00           C
ATOM     21  CA  ASN    21      12.715  -2.509   7.232  1.00 25.00           C
ATOM     22  CA  TRP    22      12.143  -0.509   4.000  1.00 25.00           C
ATOM     23  CA  SER    23      14.141  -3.193   2.128  1.00 25.00           C
ATOM     24  CA  ARG    24      12.370  -4.000  -1.116  1.00 25.00           C
ATOM     25  CA  GLY    25      10.340  -0.806  -1.551  1.00 25.00           C
ATOM     26  CA  PHE    26      10.115  -1.539  -5.301  1.00 25.00           C
ATOM     27  CA  GLY    27       9.550  -5.130  -6.507  1.00 25.00           C
ATOM     28  CA  ARG    28       7.754  -5.974  -3.231  1.00 25.00           C
ATOM     29  CA  GLN    29       5.540  -2.873  -3.617  1.00 25.00           C
ATOM     30  CA  ILE    30       3.799  -3.822  -6.858  1.00 25.00           C
ATOM     31  CA  GLY    31       4.302  -7.624  -6.667  1.00 25.00           C
ATOM     32  CA  PRO    32       5.890  -7.725 -10.138  1.00 25.00           C
ATOM     33  CA  LEU    33       7.829 -10.802  -9.036  1.00 25.00           C
ATOM     34  CA  PHE    34      10.258 -12.913 -10.974  1.00 25.00           C
ATOM     35  CA  GLU    35       9.857 -16.635 -11.384  1.00 25.00           C
ATOM     36  CA  HIS    36      11.981 -17.458 -14.433  1.00 25.00           C
ATOM     37  CA  ARG    37      12.114 -17.252 -18.231  1.00 25.00           C
ATOM     38  CA  GLU    38      14.002 -19.672 -20.397  1.00 25.00           C
ATOM     39  CA  GLY    39      17.752 -18.931 -19.977  1.00 25.00           C
ATOM     40  CA  PRO    40      20.434 -16.908 -21.816  1.00 25.00           C
ATOM     41  CA  GLY    41      18.241 -13.749 -21.716  1.00 25.00           C
ATOM     42  CA  GLN    42      15.236 -12.011 -20.229  1.00 25.00           C
ATOM     43  CA  ALA    43      14.165 -12.536 -16.558  1.00 25.00           C
ATOM     44  CA  ARG    44      10.349 -12.171 -16.413  1.00 25.00           C
ATOM     45  CA  LEU    45       7.640 -10.417 -14.508  1.00 25.00           C
ATOM     46  CA  ALA    46       5.264 -12.571 -12.383  1.00 25.00           C
ATOM     47  CA  PHE    47       1.961 -10.695 -12.198  1.00 25.00           C
ATOM     48  CA  ARG    48       1.023 -11.935  -8.726  1.00 25.00           C
ATOM     49  CA  VAL    49      -2.616 -11.275  -9.329  1.00 25.00           C
ATOM     50  CA  GLU    50      -4.357 -10.754  -6.008  1.00 25.00           C
ATOM     51  CA  GLU    51      -4.351  -9.086  -2.559  1.00 25.00           C
ATOM     52  CA  HIS    52      -6.559  -6.209  -3.793  1.00 25.00           C
ATOM     53  CA  HIS    53      -4.140  -5.562  -6.690  1.00 25.00           C
ATOM     54  CA  THR    54      -6.583  -7.177  -9.144  1.00 25.00           C
ATOM     55  CA  ASN    55     -10.069  -5.881  -8.104  1.00 25.00           C
ATOM     56  CA  GLY    56     -12.867  -3.565  -9.261  1.00 25.00           C
ATOM     57  CA  LEU    57     -15.041  -6.625  -8.632  1.00 25.00           C
ATOM     58  CA  GLY    58     -12.981  -9.567  -9.821  1.00 25.00           C
ATOM     59  CA  ASN    59     -10.342  -8.915 -12.503  1.00 25.00           C
ATOM     60  CA  CYS    60      -6.867  -9.036 -14.011  1.00 25.00           C
ATOM     61  CA  HIS    61      -6.978  -5.217 -13.941  1.00 25.00           C
ATOM     62  CA  GLY    62      -5.112  -5.387 -17.306  1.00 25.00           C
ATOM     63  CA  GLY    63      -3.215  -2.445 -15.755  1.00 25.00           C
ATOM     64  CA  MET    64      -1.276  -4.853 -13.496  1.00 25.00           C
ATOM     65  CA  LEU    65      -0.395  -7.024 -16.526  1.00 25.00           C
ATOM     66  CA  MET    66       0.811  -3.926 -18.425  1.00 25.00           C
ATOM     67  CA  SER    67       2.963  -2.895 -15.430  1.00 25.00           C
ATOM     68  CA  PHE    68       4.460  -6.415 -15.264  1.00 25.00           C
ATOM     69  CA  ALA    69       5.240  -6.288 -19.011  1.00 25.00           C
ATOM     70  CA  ASP    70       6.923  -2.877 -18.570  1.00 25.00           C
ATOM     71  CA  MET    71       9.010  -4.253 -15.669  1.00 25.00           C
ATOM     72  CA  ALA    72      10.054  -7.251 -17.812  1.00 25.00           C
ATOM     73  CA  TRP    73      11.055  -4.897 -20.662  1.00 25.00           C
ATOM     74  CA  GLY    74      13.115  -2.781 -18.224  1.00 25.00           C
ATOM     75  CA  ARG    75      14.850  -5.934 -16.914  1.00 25.00           C
ATOM     76  CA  ILE    76      15.639  -7.020 -20.501  1.00 25.00           C
ATOM     77  CA  ILE    77      17.082  -3.553 -21.259  1.00 25.00           C
ATOM     78  CA  SER    78      19.242  -3.736 -18.103  1.00 25.00           C
ATOM     79  CA  LEU    79      20.501  -7.203 -19.135  1.00 25.00           C
ATOM     80  CA  GLN    80      23.406  -5.935 -21.300  1.00 25.00           C
ATOM     81  CA  LYS    81      25.437  -4.837 -24.336  1.00 25.00           C
ATOM     82  CA  SER    82      25.090  -1.142 -25.333  1.00 25.00           C
ATOM     83  CA  TYR    83      23.310   0.863 -22.635  1.00 25.00           C
ATOM     84  CA  SER    84      21.229   1.449 -19.496  1.00 25.00           C
ATOM     85  CA  TRP    85      17.697   2.428 -18.592  1.00 25.00           C
ATOM     86  CA  VAL    86      14.423   4.228 -18.148  1.00 25.00           C
ATOM     87  CA  THR    87      10.901   3.039 -18.888  1.00 25.00           C
ATOM     88  CA  VAL    88       9.618   4.399 -22.162  1.00 25.00           C
ATOM     89  CA  ARG    89       6.372   4.470 -24.219  1.00 25.00           C
ATOM     90  CA  LEU    90       4.433   1.356 -23.090  1.00 25.00           C
ATOM     91  CA  MET    91       2.034   0.094 -25.759  1.00 25.00           C
ATOM     92  CA  CYS    92      -1.200  -1.768 -24.889  1.00 25.00           C
ATOM     93  CA  ASP    93      -4.265  -4.032 -24.899  1.00 25.00           C
ATOM     94  CA  PHE    94      -6.378  -7.091 -25.557  1.00 25.00           C
ATOM     95  CA  LEU    95      -8.461  -9.572 -23.467  1.00 25.00           C
ATOM     96  CA  SER    96      -9.861 -12.536 -21.552  1.00 25.00           C
ATOM     97  CA  GLY    97      -9.708 -12.406 -17.749  1.00 25.00           C
ATOM     98  CA  ALA    98      -8.118 -15.019 -15.403  1.00 25.00           C
ATOM     99  CA  LYS    99      -8.708 -16.483 -11.934  1.00 25.00           C
ATOM    100  CA  LEU   100      -7.884 -14.844  -8.622  1.00 25.00           C
ATOM    101  CA  GLY   101      -5.738 -17.797  -7.603  1.00 25.00           C
ATOM    102  CA  ASP   102      -3.821 -18.322 -10.831  1.00 25.00           C
ATOM    103  CA  TRP   103      -0.709 -16.178 -10.948  1.00 25.00           C
ATOM    104  CA  VAL   104       1.904 -16.325 -13.722  1.00 25.00           C
ATOM    105  CA  GLU   105       4.170 -17.424 -16.536  1.00 25.00           C
ATOM    106  CA  GLY   106       6.259 -14.695 -18.278  1.00 25.00           C
ATOM    107  CA  GLU   107       8.093 -14.036 -21.528  1.00 25.00           C
ATOM    108  CA  GLY   108      10.118 -10.804 -21.993  1.00 25.00           C
ATOM    109  CA  GLU   109      12.171 -13.054 -24.338  1.00 25.00           C
ATOM    110  CA  LEU   110      14.782 -11.280 -26.403  1.00 25.00           C
ATOM    111  CA  ILE   111      13.577  -9.867 -29.755  1.00 25.00           C
ATOM    112  CA  SER   112      15.351  -7.187 -31.725  1.00 25.00           C
ATOM    113  CA  GLU   113      18.178  -4.716 -32.219  1.00 25.00           C
ATOM    114  CA  GLU   114      18.818  -2.510 -35.272  1.00 25.00           C
ATOM    115  CA  ASP   115      17.042   0.307 -33.369  1.00 25.00           C
ATOM    116  CA  MET   116      16.247  -0.775 -29.782  1.00 25.00           C
ATOM    117  CA  LEU   117      15.470  -3.072 -26.847  1.00 25.00           C
ATOM    118  CA  PHE   118      14.438  -6.354 -25.186  1.00 25.00           C
ATOM    119  CA  THR   119      10.957  -6.548 -26.847  1.00 25.00           C
ATOM    120  CA  VAL   120       7.843  -8.714 -27.299  1.00 25.00           C
ATOM    121  CA  ARG   121       6.002 -11.285 -25.151  1.00 25.00           C
ATOM    122  CA  GLY   122       3.131 -12.289 -22.867  1.00 25.00           C
ATOM    123  CA  ARG   123       3.027 -10.895 -19.329  1.00 25.00           C
ATOM    124  CA  ILE   124       0.654 -13.168 -17.472  1.00 25.00           C
ATOM    125  CA  TRP   125      -0.980 -16.533 -17.842  1.00 25.00           C
ATOM    126  CA  ALA   126      -1.845 -19.351 -15.363  1.00 25.00           C
ATOM    127  CA  GLY   127      -4.181 -22.177 -16.201  1.00 25.00           C
ATOM    128  CA  GLU   128      -3.407 -21.977 -19.915  1.00 25.00           C
ATOM    129  CA  ARG   129      -1.107 -19.724 -21.968  1.00 25.00           C
ATOM    130  CA  THR   130      -2.478 -16.689 -23.661  1.00 25.00           C
ATOM    131  CA  LEU   131      -3.035 -13.239 -22.221  1.00 25.00           C
ATOM    132  CA  ILE   132      -2.973  -9.485 -22.665  1.00 25.00           C
ATOM    133  CA  THR   133      -0.735  -8.242 -25.522  1.00 25.00           C
ATOM    134  CA  GLY   134       1.638  -7.358 -22.699  1.00 25.00           C
ATOM    135  CA  THR   135       4.387  -5.821 -24.832  1.00 25.00           C
ATOM    136  CA  GLY   136       6.847  -3.023 -24.411  1.00 25.00           C
ATOM    137  CA  VAL   137       9.449  -0.609 -23.180  1.00 25.00           C
ATOM    138  CA  PHE   138      13.120   0.181 -23.774  1.00 25.00           C
ATOM    139  CA  LYS   139      15.800   2.875 -23.734  1.00 25.00           C
ATOM    140  CA  ALA   140      18.825   1.177 -25.318  1.00 25.00           C
ATOM    141  CA  LEU   141      20.629   4.449 -25.033  1.00 25.00           C
ATOM    142  CA  SER   142      23.580   6.832 -24.927  1.00 25.00           C
ATOM    143  CA  ALA   143      25.832   9.898 -24.400  1.00 25.00           C
ATOM    144  CA  ARG   144      26.859   9.512 -20.712  1.00 25.00           C
ATOM    145  CA  LYS   145      24.635  12.426 -19.702  1.00 25.00           C
ATOM    146  CA  PRO   146      21.723   9.985 -19.676  1.00 25.00           C
ATOM    147  CA  ARG   147      21.405   8.845 -16.092  1.00 25.00           C
ATOM    148  CA  PRO   148      23.372   5.707 -15.269  1.00 25.00           C
ATOM    149  CA  GLY   149      22.057   2.334 -14.106  1.00 25.00           C
ATOM    150  CA  GLU   150      20.258  -0.475 -12.305  1.00 25.00           C
ATOM    151  CA  LEU   151      18.185  -3.526 -13.197  1.00 25.00           C
ATOM    152  CA  ALA   152      21.582  -5.322 -13.404  1.00 25.00           C
ATOM    153  CA  TYR   153      24.039  -8.223 -13.321  1.00 25.00           C
ATOM    154  CA  LYS   154      27.381  -9.804 -12.381  1.00 25.00           C
ATOM    155  CA  GLU   155      26.882 -13.421 -11.384  1.00 25.00           C
ATOM    156  CA  GLU   156      24.445 -15.300  -9.103  1.00 25.00           C
ATOM    157  CA  ALA   157      22.046 -12.417  -8.567  1.00 25.00           C
TER
END
