
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  157 (  157),  selected  157 , name T0322TS168_1
# Molecule2: number of CA atoms  142 ( 1089),  selected  142 , name T0322.pdb
# PARAMETERS: T0322TS168_1.T0322.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      A      12           -
LGA    S       2      I      13           -
LGA    D       3      P      14           -
LGA    D       4      E      15           -
LGA    L       5      G      16           -
LGA    T       6      F      17           -
LGA    D       7      S      18           -
LGA    A       8      Q      19           -
LGA    Q       9      L      20           -
LGA    T      10      -       -           -
LGA    A      11      -       -           -
LGA    A      12      -       -           -
LGA    I      13      -       -           -
LGA    P      14      -       -           -
LGA    E      15      -       -           -
LGA    G      16      -       -           -
LGA    F      17      -       -           -
LGA    S      18      -       -           -
LGA    Q      19      -       -           -
LGA    L      20      -       -           -
LGA    N      21      -       -           -
LGA    W      22      -       -           -
LGA    S      23      -       -           -
LGA    R      24      -       -           -
LGA    G      25      N      21          2.675
LGA    F      26      W      22          4.369
LGA    -       -      S      23           -
LGA    -       -      R      24           -
LGA    -       -      G      25           -
LGA    G      27      F      26          4.219
LGA    R      28      G      27          2.886
LGA    Q      29      R      28          2.921
LGA    -       -      Q      29           -
LGA    -       -      I      30           -
LGA    I      30      G      31          1.841
LGA    G      31      P      32          2.809
LGA    P      32      L      33          2.379
LGA    L      33      F      34          1.094
LGA    F      34      E      35          1.682
LGA    E      35      H      36          3.048
LGA    -       -      R      37           -
LGA    -       -      E      38           -
LGA    -       -      G      39           -
LGA    H      36      P      40           #
LGA    R      37      G      41          1.917
LGA    E      38      -       -           -
LGA    G      39      -       -           -
LGA    P      40      -       -           -
LGA    G      41      -       -           -
LGA    Q      42      Q      42           #
LGA    A      43      A      43          1.374
LGA    R      44      R      44          0.579
LGA    L      45      L      45          1.706
LGA    A      46      A      46          1.069
LGA    F      47      F      47          2.304
LGA    R      48      R      48          1.781
LGA    V      49      V      49          1.380
LGA    E      50      E      50          1.443
LGA    E      51      E      51          1.442
LGA    H      52      H      52          0.746
LGA    H      53      H      53          0.886
LGA    T      54      T      54          4.286
LGA    N      55      N      55          1.648
LGA    G      56      G      56          2.983
LGA    L      57      L      57          4.103
LGA    G      58      G      58          2.632
LGA    N      59      N      59          2.075
LGA    C      60      C      60          1.288
LGA    H      61      H      61          0.758
LGA    G      62      G      62          1.240
LGA    G      63      G      63          1.054
LGA    M      64      M      64          0.730
LGA    L      65      L      65          1.228
LGA    M      66      M      66          0.970
LGA    S      67      S      67          0.507
LGA    F      68      F      68          1.422
LGA    A      69      A      69          1.550
LGA    D      70      D      70          0.474
LGA    M      71      M      71          1.734
LGA    A      72      A      72          2.593
LGA    W      73      W      73          2.768
LGA    G      74      G      74          2.950
LGA    R      75      R      75          3.374
LGA    I      76      I      76          2.722
LGA    I      77      I      77          1.232
LGA    S      78      S      78          2.590
LGA    L      79      L      79          2.800
LGA    -       -      Q      80           -
LGA    Q      80      K      81          4.527
LGA    K      81      S      82          3.338
LGA    S      82      Y      83          4.072
LGA    Y      83      -       -           -
LGA    S      84      S      84          1.460
LGA    W      85      W      85          0.526
LGA    V      86      V      86          0.883
LGA    T      87      T      87          1.767
LGA    V      88      V      88          1.358
LGA    R      89      R      89          0.218
LGA    L      90      L      90          1.728
LGA    M      91      M      91          2.018
LGA    C      92      C      92          1.303
LGA    D      93      D      93          0.607
LGA    F      94      F      94          1.425
LGA    L      95      L      95          1.465
LGA    S      96      S      96          1.124
LGA    G      97      G      97          1.099
LGA    A      98      A      98          1.307
LGA    K      99      K      99          1.183
LGA    L     100      L     100          2.100
LGA    G     101      G     101          2.095
LGA    D     102      D     102          1.998
LGA    W     103      W     103          1.983
LGA    V     104      V     104          0.711
LGA    E     105      E     105          2.104
LGA    G     106      G     106          1.914
LGA    E     107      E     107          1.700
LGA    G     108      G     108          1.406
LGA    E     109      E     109          1.918
LGA    L     110      L     110          2.380
LGA    I     111      I     111          2.423
LGA    S     112      S     112          2.440
LGA    E     113      E     113          4.002
LGA    E     114      E     114          4.613
LGA    D     115      D     115          4.939
LGA    -       -      M     116           -
LGA    M     116      L     117          3.585
LGA    L     117      F     118          1.637
LGA    F     118      T     119          5.230
LGA    T     119      V     120          0.784
LGA    V     120      R     121          3.178
LGA    R     121      G     122          1.701
LGA    G     122      R     123          0.881
LGA    R     123      I     124          1.877
LGA    I     124      W     125          2.012
LGA    W     125      A     126          2.422
LGA    A     126      G     127          1.854
LGA    G     127      -       -           -
LGA    E     128      E     128          1.745
LGA    R     129      R     129          1.635
LGA    T     130      T     130          1.540
LGA    L     131      L     131          1.658
LGA    I     132      I     132          2.084
LGA    T     133      T     133          2.525
LGA    G     134      G     134          2.234
LGA    T     135      T     135          5.323
LGA    G     136      G     136          1.383
LGA    V     137      V     137          2.996
LGA    F     138      F     138          0.981
LGA    K     139      K     139          2.166
LGA    A     140      A     140          1.726
LGA    L     141      L     141          2.272
LGA    S     142      -       -           -
LGA    A     143      -       -           -
LGA    R     144      -       -           -
LGA    K     145      -       -           -
LGA    P     146      S     142           #
LGA    R     147      A     143           -
LGA    P     148      R     144           -
LGA    G     149      K     145           -
LGA    E     150      -       -           -
LGA    L     151      -       -           -
LGA    A     152      -       -           -
LGA    Y     153      P     146           #
LGA    K     154      R     147           -
LGA    E     155      -       -           -
LGA    E     156      P     148          4.906
LGA    A     157      G     149          2.936
LGA    -       -      E     150           -
LGA    -       -      L     151           -
LGA    -       -      A     152           -
LGA    -       -      Y     153           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  157  142    5.0    111    2.37    74.77     54.547     4.494

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.640597 * X  +  -0.677125 * Y  +   0.362128 * Z  +  10.439576
  Y_new =  -0.760095 * X  +   0.626133 * Y  +  -0.173818 * Z  +  -6.618047
  Z_new =  -0.109043 * X  +  -0.386599 * Y  +  -0.915779 * Z  + -14.968707 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.742135    0.399457  [ DEG:  -157.1128     22.8872 ]
  Theta =   0.109261    3.032332  [ DEG:     6.2602    173.7398 ]
  Phi   =  -2.271087    0.870506  [ DEG:  -130.1237     49.8763 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0322TS168_1                                  
REMARK     2: T0322.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0322TS168_1.T0322.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  157  142   5.0  111   2.37   74.77  54.547
REMARK  ---------------------------------------------------------- 
MOLECULE T0322TS168_1
PFRMAT TS
TARGET T0322
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      32.584  11.404  -5.810  1.00 25.00           C
ATOM      2  CA  SER     2      32.524   9.420  -2.525  1.00 25.00           C
ATOM      3  CA  ASP     3      32.912   5.982  -4.167  1.00 25.00           C
ATOM      4  CA  ASP     4      35.806   3.528  -3.538  1.00 25.00           C
ATOM      5  CA  LEU     5      33.145   0.849  -3.568  1.00 25.00           C
ATOM      6  CA  THR     6      34.917  -0.951  -0.648  1.00 25.00           C
ATOM      7  CA  ASP     7      36.757  -1.962   2.562  1.00 25.00           C
ATOM      8  CA  ALA     8      34.747   0.889   4.142  1.00 25.00           C
ATOM      9  CA  GLN     9      31.546  -1.201   3.899  1.00 25.00           C
ATOM     10  CA  THR    10      33.326  -4.164   5.547  1.00 25.00           C
ATOM     11  CA  ALA    11      35.107  -6.622   3.349  1.00 25.00           C
ATOM     12  CA  ALA    12      32.394  -9.132   4.417  1.00 25.00           C
ATOM     13  CA  ILE    13      28.795  -7.902   4.426  1.00 25.00           C
ATOM     14  CA  PRO    14      27.247 -10.343   6.900  1.00 25.00           C
ATOM     15  CA  GLU    15      24.651 -10.590   9.590  1.00 25.00           C
ATOM     16  CA  GLY    16      21.309 -12.215   8.864  1.00 25.00           C
ATOM     17  CA  PHE    17      19.808  -8.707   9.207  1.00 25.00           C
ATOM     18  CA  SER    18      18.179  -6.633   6.441  1.00 25.00           C
ATOM     19  CA  GLN    19      17.371  -3.665   8.775  1.00 25.00           C
ATOM     20  CA  LEU    20      13.638  -4.434   8.691  1.00 25.00           C
ATOM     21  CA  ASN    21      12.964  -2.651   5.398  1.00 25.00           C
ATOM     22  CA  TRP    22      11.321   0.495   4.089  1.00 25.00           C
ATOM     23  CA  SER    23      12.781   0.136   0.579  1.00 25.00           C
ATOM     24  CA  ARG    24      11.482  -0.900  -2.827  1.00 25.00           C
ATOM     25  CA  GLY    25      11.037  -4.691  -2.996  1.00 25.00           C
ATOM     26  CA  PHE    26      10.058  -5.272  -6.675  1.00 25.00           C
ATOM     27  CA  GLY    27       8.368  -1.856  -7.058  1.00 25.00           C
ATOM     28  CA  ARG    28       4.923  -3.495  -6.716  1.00 25.00           C
ATOM     29  CA  GLN    29       6.081  -5.326  -3.558  1.00 25.00           C
ATOM     30  CA  ILE    30       3.600  -8.008  -4.736  1.00 25.00           C
ATOM     31  CA  GLY    31       5.662 -10.649  -6.559  1.00 25.00           C
ATOM     32  CA  PRO    32       8.380  -9.472  -9.007  1.00 25.00           C
ATOM     33  CA  LEU    33       9.725 -12.985  -8.444  1.00 25.00           C
ATOM     34  CA  PHE    34      11.009 -14.539 -11.680  1.00 25.00           C
ATOM     35  CA  GLU    35      10.274 -17.912 -13.206  1.00 25.00           C
ATOM     36  CA  HIS    36       9.861 -19.078 -16.760  1.00 25.00           C
ATOM     37  CA  ARG    37      12.347 -17.753 -19.295  1.00 25.00           C
ATOM     38  CA  GLU    38      12.959 -19.118 -22.756  1.00 25.00           C
ATOM     39  CA  GLY    39      15.833 -18.408 -25.209  1.00 25.00           C
ATOM     40  CA  PRO    40      18.588 -16.888 -23.011  1.00 25.00           C
ATOM     41  CA  GLY    41      17.364 -13.359 -23.730  1.00 25.00           C
ATOM     42  CA  GLN    42      14.207 -13.516 -21.564  1.00 25.00           C
ATOM     43  CA  ALA    43      13.294 -12.145 -18.127  1.00 25.00           C
ATOM     44  CA  ARG    44      10.220 -13.755 -16.639  1.00 25.00           C
ATOM     45  CA  LEU    45       8.363 -10.897 -14.841  1.00 25.00           C
ATOM     46  CA  ALA    46       6.297 -12.799 -12.284  1.00 25.00           C
ATOM     47  CA  PHE    47       3.111 -10.897 -11.432  1.00 25.00           C
ATOM     48  CA  ARG    48       1.039 -12.953  -8.915  1.00 25.00           C
ATOM     49  CA  VAL    49      -2.476 -11.531  -9.304  1.00 25.00           C
ATOM     50  CA  GLU    50      -3.448 -11.610  -5.645  1.00 25.00           C
ATOM     51  CA  GLU    51      -6.048  -9.031  -4.672  1.00 25.00           C
ATOM     52  CA  HIS    52      -4.463  -5.545  -4.608  1.00 25.00           C
ATOM     53  CA  HIS    53      -4.115  -5.606  -8.422  1.00 25.00           C
ATOM     54  CA  THR    54      -6.500  -2.670  -8.167  1.00 25.00           C
ATOM     55  CA  ASN    55      -9.618  -4.681  -8.897  1.00 25.00           C
ATOM     56  CA  GLY    56     -13.401  -4.227  -9.049  1.00 25.00           C
ATOM     57  CA  LEU    57     -14.584  -6.507 -11.818  1.00 25.00           C
ATOM     58  CA  GLY    58     -12.568  -9.257 -10.026  1.00 25.00           C
ATOM     59  CA  ASN    59     -10.696  -9.506 -13.313  1.00 25.00           C
ATOM     60  CA  CYS    60      -6.865  -9.331 -13.083  1.00 25.00           C
ATOM     61  CA  HIS    61      -6.694  -5.492 -13.175  1.00 25.00           C
ATOM     62  CA  GLY    62      -5.426  -5.563 -16.726  1.00 25.00           C
ATOM     63  CA  GLY    63      -3.774  -2.124 -16.391  1.00 25.00           C
ATOM     64  CA  MET    64      -1.803  -3.342 -13.342  1.00 25.00           C
ATOM     65  CA  LEU    65      -0.662  -6.439 -15.285  1.00 25.00           C
ATOM     66  CA  MET    66       0.448  -4.226 -18.206  1.00 25.00           C
ATOM     67  CA  SER    67       2.398  -1.979 -15.797  1.00 25.00           C
ATOM     68  CA  PHE    68       4.088  -5.053 -14.259  1.00 25.00           C
ATOM     69  CA  ALA    69       5.027  -6.314 -17.752  1.00 25.00           C
ATOM     70  CA  ASP    70       6.489  -2.883 -18.625  1.00 25.00           C
ATOM     71  CA  MET    71       8.519  -2.895 -15.378  1.00 25.00           C
ATOM     72  CA  ALA    72       9.830  -6.403 -16.180  1.00 25.00           C
ATOM     73  CA  TRP    73      10.820  -5.254 -19.697  1.00 25.00           C
ATOM     74  CA  GLY    74      12.643  -2.226 -18.221  1.00 25.00           C
ATOM     75  CA  ARG    75      14.496  -4.508 -15.764  1.00 25.00           C
ATOM     76  CA  ILE    76      15.507  -6.824 -18.642  1.00 25.00           C
ATOM     77  CA  ILE    77      16.781  -3.819 -20.647  1.00 25.00           C
ATOM     78  CA  SER    78      18.804  -2.628 -17.622  1.00 25.00           C
ATOM     79  CA  LEU    79      20.305  -6.127 -17.216  1.00 25.00           C
ATOM     80  CA  GLN    80      23.232  -4.126 -15.764  1.00 25.00           C
ATOM     81  CA  LYS    81      24.160  -1.269 -18.044  1.00 25.00           C
ATOM     82  CA  SER    82      24.095   1.781 -20.288  1.00 25.00           C
ATOM     83  CA  TYR    83      20.624   2.964 -19.215  1.00 25.00           C
ATOM     84  CA  SER    84      17.893   3.127 -16.527  1.00 25.00           C
ATOM     85  CA  TRP    85      15.577   2.387 -19.485  1.00 25.00           C
ATOM     86  CA  VAL    86      11.991   3.580 -19.946  1.00 25.00           C
ATOM     87  CA  THR    87       8.379   2.566 -20.670  1.00 25.00           C
ATOM     88  CA  VAL    88       9.225   3.807 -24.226  1.00 25.00           C
ATOM     89  CA  ARG    89       6.337   2.587 -26.409  1.00 25.00           C
ATOM     90  CA  LEU    90       2.995   1.423 -24.963  1.00 25.00           C
ATOM     91  CA  MET    91      -0.100  -0.417 -26.190  1.00 25.00           C
ATOM     92  CA  CYS    92      -1.796  -3.577 -24.927  1.00 25.00           C
ATOM     93  CA  ASP    93      -4.224  -6.039 -26.441  1.00 25.00           C
ATOM     94  CA  PHE    94      -6.059  -6.835 -23.257  1.00 25.00           C
ATOM     95  CA  LEU    95      -7.495 -10.180 -24.517  1.00 25.00           C
ATOM     96  CA  SER    96      -9.110 -12.865 -22.436  1.00 25.00           C
ATOM     97  CA  GLY    97      -8.539 -12.798 -18.680  1.00 25.00           C
ATOM     98  CA  ALA    98      -7.866 -14.049 -15.135  1.00 25.00           C
ATOM     99  CA  LYS    99      -9.132 -14.952 -11.738  1.00 25.00           C
ATOM    100  CA  LEU   100      -8.314 -15.660  -8.117  1.00 25.00           C
ATOM    101  CA  GLY   101      -5.377 -18.042  -8.065  1.00 25.00           C
ATOM    102  CA  ASP   102      -4.882 -18.166 -11.866  1.00 25.00           C
ATOM    103  CA  TRP   103      -1.668 -16.166 -12.092  1.00 25.00           C
ATOM    104  CA  VAL   104       0.947 -14.534 -14.321  1.00 25.00           C
ATOM    105  CA  GLU   105       3.551 -16.938 -15.543  1.00 25.00           C
ATOM    106  CA  GLY   106       5.188 -13.989 -17.196  1.00 25.00           C
ATOM    107  CA  GLU   107       6.997 -13.636 -20.521  1.00 25.00           C
ATOM    108  CA  GLY   108       9.301 -11.281 -22.418  1.00 25.00           C
ATOM    109  CA  GLU   109      10.983 -12.974 -25.393  1.00 25.00           C
ATOM    110  CA  LEU   110      13.673 -10.403 -25.832  1.00 25.00           C
ATOM    111  CA  ILE   111      13.432 -10.238 -29.614  1.00 25.00           C
ATOM    112  CA  SER   112      14.283  -7.447 -32.114  1.00 25.00           C
ATOM    113  CA  GLU   113      16.354  -4.894 -34.111  1.00 25.00           C
ATOM    114  CA  GLU   114      16.652  -1.852 -36.372  1.00 25.00           C
ATOM    115  CA  ASP   115      17.590  -0.106 -33.129  1.00 25.00           C
ATOM    116  CA  MET   116      16.837  -1.788 -29.836  1.00 25.00           C
ATOM    117  CA  LEU   117      15.233  -3.458 -26.829  1.00 25.00           C
ATOM    118  CA  PHE   118      13.035  -5.517 -24.508  1.00 25.00           C
ATOM    119  CA  THR   119      10.758  -5.757 -27.529  1.00 25.00           C
ATOM    120  CA  VAL   120       7.952  -7.332 -25.520  1.00 25.00           C
ATOM    121  CA  ARG   121       5.847 -10.164 -27.057  1.00 25.00           C
ATOM    122  CA  GLY   122       3.565 -11.649 -24.402  1.00 25.00           C
ATOM    123  CA  ARG   123       2.726 -10.964 -20.745  1.00 25.00           C
ATOM    124  CA  ILE   124       0.612 -13.821 -19.445  1.00 25.00           C
ATOM    125  CA  TRP   125      -0.482 -17.415 -18.692  1.00 25.00           C
ATOM    126  CA  ALA   126      -0.505 -20.162 -16.061  1.00 25.00           C
ATOM    127  CA  GLY   127      -2.623 -23.280 -15.631  1.00 25.00           C
ATOM    128  CA  GLU   128      -3.209 -22.945 -19.310  1.00 25.00           C
ATOM    129  CA  ARG   129      -3.559 -20.121 -21.813  1.00 25.00           C
ATOM    130  CA  THR   130      -2.004 -17.228 -23.658  1.00 25.00           C
ATOM    131  CA  LEU   131      -3.589 -13.933 -22.403  1.00 25.00           C
ATOM    132  CA  ILE   132      -2.793 -10.390 -21.383  1.00 25.00           C
ATOM    133  CA  THR   133      -0.875  -9.151 -24.355  1.00 25.00           C
ATOM    134  CA  GLY   134       2.120  -6.856 -25.118  1.00 25.00           C
ATOM    135  CA  THR   135       2.997  -3.541 -23.439  1.00 25.00           C
ATOM    136  CA  GLY   136       6.230  -2.455 -25.215  1.00 25.00           C
ATOM    137  CA  VAL   137       9.796  -1.613 -24.364  1.00 25.00           C
ATOM    138  CA  PHE   138      13.065   0.116 -23.699  1.00 25.00           C
ATOM    139  CA  LYS   139      15.716   1.725 -25.971  1.00 25.00           C
ATOM    140  CA  ALA   140      18.160   3.522 -23.662  1.00 25.00           C
ATOM    141  CA  LEU   141      18.562   6.803 -21.780  1.00 25.00           C
ATOM    142  CA  SER   142      19.246  10.529 -21.679  1.00 25.00           C
ATOM    143  CA  ALA   143      21.949  10.418 -18.997  1.00 25.00           C
ATOM    144  CA  ARG   144      24.602  11.668 -21.351  1.00 25.00           C
ATOM    145  CA  LYS   145      24.473   9.283 -24.238  1.00 25.00           C
ATOM    146  CA  PRO   146      25.830   5.781 -23.676  1.00 25.00           C
ATOM    147  CA  ARG   147      26.113   3.166 -26.483  1.00 25.00           C
ATOM    148  CA  PRO   148      26.418  -0.184 -24.744  1.00 25.00           C
ATOM    149  CA  GLY   149      25.328  -3.560 -23.346  1.00 25.00           C
ATOM    150  CA  GLU   150      24.668  -6.816 -21.500  1.00 25.00           C
ATOM    151  CA  LEU   151      21.160  -8.267 -21.757  1.00 25.00           C
ATOM    152  CA  ALA   152      20.984 -10.862 -19.056  1.00 25.00           C
ATOM    153  CA  TYR   153      23.581 -11.925 -16.480  1.00 25.00           C
ATOM    154  CA  LYS   154      27.269 -12.937 -16.917  1.00 25.00           C
ATOM    155  CA  GLU   155      27.324 -14.555 -13.523  1.00 25.00           C
ATOM    156  CA  GLU   156      24.014 -14.685 -11.694  1.00 25.00           C
ATOM    157  CA  ALA   157      22.805 -11.421 -10.113  1.00 25.00           C
TER
END
