
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS599_3
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS599_3.T0319.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    K       2      K       2           -
LGA    F       3      F       3           -
LGA    L       4      L       4           -
LGA    T       5      T       5           -
LGA    T       6      T       6           -
LGA    N       7      N       7           -
LGA    F       8      F       8           -
LGA    L       9      L       9           -
LGA    K      10      K      10           -
LGA    C      11      C      11           -
LGA    -       -      S      12           -
LGA    -       -      V      13           -
LGA    -       -      K      14           -
LGA    -       -      A      15           -
LGA    -       -      C      16           -
LGA    -       -      D      17           -
LGA    -       -      T      18           -
LGA    S      12      S      19           #
LGA    V      13      N      20          1.964
LGA    K      14      D      21           #
LGA    A      15      -       -           -
LGA    C      16      -       -           -
LGA    D      17      -       -           -
LGA    T      18      -       -           -
LGA    S      19      -       -           -
LGA    N      20      -       -           -
LGA    D      21      -       -           -
LGA    N      22      -       -           -
LGA    F      23      -       -           -
LGA    P      24      -       -           -
LGA    L      25      -       -           -
LGA    Q      26      N      22          4.817
LGA    Y      27      F      23          2.264
LGA    D      28      P      24           #
LGA    G      29      -       -           -
LGA    S      30      -       -           -
LGA    K      31      -       -           -
LGA    C      32      L      25          3.572
LGA    Q      33      -       -           -
LGA    L      34      -       -           -
LGA    V      35      Q      26          3.160
LGA    Q      36      Y      27          4.735
LGA    D      37      -       -           -
LGA    E      38      -       -           -
LGA    S      39      -       -           -
LGA    I      40      D      28          4.701
LGA    E      41      G      29          4.068
LGA    F      42      S      30           -
LGA    N      43      K      31           -
LGA    P      44      C      32           -
LGA    E      45      Q      33           -
LGA    F      46      L      34           -
LGA    L      47      V      35           -
LGA    L      48      Q      36           -
LGA    N      49      D      37           -
LGA    I      50      E      38           -
LGA    V      51      S      39           -
LGA    D      52      I      40           -
LGA    R      53      E      41           -
LGA    V      54      F      42           -
LGA    -       -      N      43           -
LGA    -       -      P      44           -
LGA    -       -      E      45           -
LGA    -       -      F      46           -
LGA    -       -      L      47           -
LGA    -       -      L      48           -
LGA    -       -      N      49           -
LGA    D      55      I      50          4.652
LGA    W      56      V      51          3.148
LGA    P      57      D      52          2.643
LGA    A      58      R      53          2.441
LGA    V      59      V      54          2.826
LGA    L      60      D      55           -
LGA    T      61      W      56           -
LGA    V      62      P      57           -
LGA    A      63      A      58           -
LGA    A      64      V      59           -
LGA    E      65      L      60           -
LGA    L      66      T      61           -
LGA    G      67      V      62           -
LGA    N      68      A      63           -
LGA    N      69      A      64           -
LGA    A      70      E      65           -
LGA    L      71      L      66           -
LGA    P      72      G      67           -
LGA    P      73      N      68           -
LGA    T      74      N      69           -
LGA    K      75      A      70           -
LGA    P      76      L      71           -
LGA    -       -      P      72           -
LGA    -       -      P      73           -
LGA    -       -      T      74           -
LGA    -       -      K      75           -
LGA    S      77      P      76           #
LGA    F      78      S      77          2.044
LGA    P      79      F      78          2.000
LGA    S      80      P      79          2.639
LGA    S      81      S      80          3.467
LGA    I      82      S      81           #
LGA    Q      83      I      82          3.013
LGA    -       -      Q      83           -
LGA    E      84      E      84          1.765
LGA    L      85      L      85          3.042
LGA    T      86      T      86          1.375
LGA    D      87      D      87          1.318
LGA    D      88      D      88          1.431
LGA    D      89      D      89          1.274
LGA    M      90      M      90          0.512
LGA    A      91      A      91          0.522
LGA    I      92      I      92          1.192
LGA    L      93      L      93          1.282
LGA    N      94      N      94          1.096
LGA    D      95      D      95          1.285
LGA    L      96      L      96          1.737
LGA    H      97      H      97          1.764
LGA    T      98      T      98          1.749
LGA    L      99      L      99          2.119
LGA    L     100      L     100          3.467
LGA    L     101      L     101          4.041
LGA    Q     102      Q     102          3.369
LGA    T     103      T     103          3.209
LGA    S     104      S     104          4.656
LGA    I     105      -       -           -
LGA    A     106      -       -           -
LGA    E     107      -       -           -
LGA    G     108      -       -           -
LGA    E     109      -       -           -
LGA    M     110      -       -           -
LGA    K     111      -       -           -
LGA    C     112      I     105          1.831
LGA    R     113      -       -           -
LGA    N     114      -       -           -
LGA    C     115      A     106          4.509
LGA    G     116      E     107          4.171
LGA    H     117      G     108          4.116
LGA    -       -      E     109           -
LGA    -       -      M     110           -
LGA    -       -      K     111           -
LGA    -       -      C     112           -
LGA    -       -      R     113           -
LGA    -       -      N     114           -
LGA    -       -      C     115           -
LGA    -       -      G     116           -
LGA    -       -      H     117           -
LGA    -       -      I     118           -
LGA    -       -      Y     119           -
LGA    -       -      Y     120           -
LGA    I     118      I     121          2.309
LGA    -       -      K     122           -
LGA    -       -      N     123           -
LGA    -       -      G     124           -
LGA    -       -      I     125           -
LGA    Y     119      P     126          3.210
LGA    Y     120      N     127          4.174
LGA    I     121      L     128          4.510
LGA    K     122      L     129          4.216
LGA    N     123      L     130           -
LGA    G     124      -       -           -
LGA    I     125      -       -           -
LGA    P     126      P     131           #
LGA    N     127      P     132           -
LGA    L     128      H     133           -
LGA    L     129      L     134           -
LGA    L     130      V     135           -
LGA    P     131      -       -           -
LGA    P     132      -       -           -
LGA    H     133      -       -           -
LGA    L     134      -       -           -
LGA    V     135      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  135  135    5.0     48    3.05    50.00     22.340     1.526

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.872756 * X  +   0.103362 * Y  +  -0.477088 * Z  +  18.752882
  Y_new =  -0.403106 * X  +   0.703817 * Y  +  -0.584933 * Z  +  -4.361553
  Z_new =   0.275323 * X  +   0.702821 * Y  +   0.655927 * Z  +  10.044095 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.819897   -2.321696  [ DEG:    46.9766   -133.0234 ]
  Theta =  -0.278926   -2.862667  [ DEG:   -15.9813   -164.0187 ]
  Phi   =  -0.432687    2.708906  [ DEG:   -24.7911    155.2089 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS599_3                                  
REMARK     2: T0319.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0319TS599_3.T0319.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  135  135   5.0   48   3.05   50.00  22.340
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS599_3
PFRMAT TS                                                                       
TARGET T0319                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      22.393 -12.132   0.404  1.00  0.00              
ATOM      2  CA  LYS     2      19.401 -11.756  -1.541  1.00  0.00              
ATOM      3  CA  PHE     3      17.779 -11.025  -4.649  1.00  0.00              
ATOM      4  CA  LEU     4      18.781 -10.584  -0.579  1.00  0.00              
ATOM      5  CA  THR     5      19.241  -6.817  -1.008  1.00  0.00              
ATOM      6  CA  THR     6      16.037  -6.574  -3.014  1.00  0.00              
ATOM      7  CA  ASN     7      14.049  -8.441  -0.333  1.00  0.00              
ATOM      8  CA  PHE     8      15.343  -6.240   2.472  1.00  0.00              
ATOM      9  CA  LEU     9      14.552  -2.980   0.652  1.00  0.00              
ATOM     10  CA  LYS    10      11.027  -4.053  -0.445  1.00  0.00              
ATOM     11  CA  CYS    11       9.560  -5.775   2.555  1.00  0.00              
ATOM     12  CA  SER    12       6.153  -4.119   3.066  1.00  0.00              
ATOM     13  CA  VAL    13       3.365  -6.533   3.709  1.00  0.00              
ATOM     14  CA  LYS    14       2.339  -8.322   6.847  1.00  0.00              
ATOM     15  CA  ALA    15       5.085 -10.896   7.639  1.00  0.00              
ATOM     16  CA  CYS    16       6.759 -11.101   4.306  1.00  0.00              
ATOM     17  CA  ASP    17       8.592 -14.276   3.472  1.00  0.00              
ATOM     18  CA  THR    18      11.532 -13.674   1.191  1.00  0.00              
ATOM     19  CA  SER    19      13.720 -16.808   1.538  1.00  0.00              
ATOM     20  CA  ASN    20      17.156 -15.945   0.320  1.00  0.00              
ATOM     21  CA  ASP    21      18.883 -14.098   3.136  1.00  0.00              
ATOM     22  CA  ASN    22      16.650 -14.774   6.070  1.00  0.00              
ATOM     23  CA  PHE    23      13.156 -13.567   6.734  1.00  0.00              
ATOM     24  CA  PRO    24      11.620 -10.296   5.856  1.00  0.00              
ATOM     25  CA  LEU    25       9.772  -8.506   8.596  1.00  0.00              
ATOM     26  CA  GLN    26       7.301  -5.824   8.125  1.00  0.00              
ATOM     27  CA  TYR    27       7.069  -2.767  10.288  1.00  0.00              
ATOM     28  CA  ASP    28       3.602  -1.107  10.248  1.00  0.00              
ATOM     29  CA  GLY    29       3.197   2.132  12.097  1.00  0.00              
ATOM     30  CA  SER    30       1.462   3.967   9.209  1.00  0.00              
ATOM     31  CA  LYS    31       4.246   2.722   6.868  1.00  0.00              
ATOM     32  CA  CYS    32       7.094   3.835   9.156  1.00  0.00              
ATOM     33  CA  GLN    33       5.492   7.334   9.306  1.00  0.00              
ATOM     34  CA  LEU    34       5.194   7.384   5.469  1.00  0.00              
ATOM     35  CA  VAL    35       8.824   6.347   4.953  1.00  0.00              
ATOM     36  CA  GLN    36      10.055   9.112   7.322  1.00  0.00              
ATOM     37  CA  ASP    37       7.879  11.802   5.652  1.00  0.00              
ATOM     38  CA  GLU    38       8.932  11.447   1.994  1.00  0.00              
ATOM     39  CA  SER    39      12.634  10.971   2.841  1.00  0.00              
ATOM     40  CA  ILE    40      13.591   8.347   0.284  1.00  0.00              
ATOM     41  CA  GLU    41      17.411   8.336   0.572  1.00  0.00              
ATOM     42  CA  PHE    42      18.425   4.703   0.410  1.00  0.00              
ATOM     43  CA  ASN    43      21.561   4.254  -1.720  1.00  0.00              
ATOM     44  CA  PRO    44      22.073   0.702  -2.901  1.00  0.00              
ATOM     45  CA  GLU    45      25.700   0.707  -1.635  1.00  0.00              
ATOM     46  CA  PHE    46      24.571   1.524   1.926  1.00  0.00              
ATOM     47  CA  LEU    47      21.970  -1.261   1.842  1.00  0.00              
ATOM     48  CA  LEU    48      24.552  -3.776   0.635  1.00  0.00              
ATOM     49  CA  ASN    49      26.939  -2.680   3.417  1.00  0.00              
ATOM     50  CA  ILE    50      24.163  -3.028   6.030  1.00  0.00              
ATOM     51  CA  VAL    51      23.109  -6.484   4.739  1.00  0.00              
ATOM     52  CA  ASP    52      26.730  -7.671   4.690  1.00  0.00              
ATOM     53  CA  ARG    53      27.127  -6.388   8.265  1.00  0.00              
ATOM     54  CA  VAL    54      24.006  -8.080   9.657  1.00  0.00              
ATOM     55  CA  ASP    55      24.802  -8.954  13.228  1.00  0.00              
ATOM     56  CA  TRP    56      23.361 -12.391  13.557  1.00  0.00              
ATOM     57  CA  PRO    57      22.941 -12.330  17.374  1.00  0.00              
ATOM     58  CA  ALA    58      20.723  -9.253  17.111  1.00  0.00              
ATOM     59  CA  VAL    59      18.764 -10.841  14.238  1.00  0.00              
ATOM     60  CA  LEU    60      18.140 -13.922  16.343  1.00  0.00              
ATOM     61  CA  THR    61      16.930 -11.838  19.260  1.00  0.00              
ATOM     62  CA  VAL    62      14.541  -9.809  17.005  1.00  0.00              
ATOM     63  CA  ALA    63      13.152 -12.958  15.467  1.00  0.00              
ATOM     64  CA  ALA    64      12.551 -14.538  18.863  1.00  0.00              
ATOM     65  CA  GLU    65      10.728 -11.455  20.047  1.00  0.00              
ATOM     66  CA  LEU    66       8.436 -11.495  17.018  1.00  0.00              
ATOM     67  CA  GLY    67       7.568 -15.200  17.403  1.00  0.00              
ATOM     68  CA  ASN    68       8.619 -16.491  14.016  1.00  0.00              
ATOM     69  CA  ASN    69       9.062 -20.184  14.520  1.00  0.00              
ATOM     70  CA  ALA    70      10.072 -20.641  10.849  1.00  0.00              
ATOM     71  CA  LEU    71      13.373 -18.732  11.157  1.00  0.00              
ATOM     72  CA  PRO    72      16.185 -21.317  11.017  1.00  0.00              
ATOM     73  CA  PRO    73      18.068 -21.671  14.252  1.00  0.00              
ATOM     74  CA  THR    74      21.420 -20.323  13.240  1.00  0.00              
ATOM     75  CA  LYS    75      21.042 -18.257  10.101  1.00  0.00              
ATOM     76  CA  PRO    76      22.836 -20.330   7.410  1.00  0.00              
ATOM     77  CA  SER    77      25.435 -17.988   5.992  1.00  0.00              
ATOM     78  CA  PHE    78      26.889 -16.893   9.315  1.00  0.00              
ATOM     79  CA  PRO    79      30.464 -17.797  10.308  1.00  0.00              
ATOM     80  CA  SER    80      29.823 -19.718  13.549  1.00  0.00              
ATOM     81  CA  SER    81      31.367 -17.215  15.844  1.00  0.00              
ATOM     82  CA  ILE    82      33.071 -14.358  13.962  1.00  0.00              
ATOM     83  CA  GLN    83      36.064 -14.829  16.312  1.00  0.00              
ATOM     84  CA  GLU    84      36.744 -18.355  15.071  1.00  0.00              
ATOM     85  CA  LEU    85      37.293 -17.346  11.408  1.00  0.00              
ATOM     86  CA  THR    86      39.626 -14.689  12.414  1.00  0.00              
ATOM     87  CA  ASP    87      40.693 -12.036  10.112  1.00  0.00              
ATOM     88  CA  ASP    88      37.669 -11.036   7.997  1.00  0.00              
ATOM     89  CA  ASP    89      35.487 -11.366  11.127  1.00  0.00              
ATOM     90  CA  MET    90      37.518  -8.838  13.037  1.00  0.00              
ATOM     91  CA  ALA    91      37.233  -6.206  10.258  1.00  0.00              
ATOM     92  CA  ILE    92      33.513  -6.575   9.959  1.00  0.00              
ATOM     93  CA  LEU    93      33.155  -6.248  13.733  1.00  0.00              
ATOM     94  CA  ASN    94      35.129  -3.016  13.863  1.00  0.00              
ATOM     95  CA  ASP    95      33.015  -1.515  11.081  1.00  0.00              
ATOM     96  CA  LEU    96      29.876  -2.583  12.925  1.00  0.00              
ATOM     97  CA  HIS    97      31.169  -1.024  16.163  1.00  0.00              
ATOM     98  CA  THR    98      31.728   2.254  14.278  1.00  0.00              
ATOM     99  CA  LEU    99      28.207   2.112  12.818  1.00  0.00              
ATOM    100  CA  LEU   100      26.652   1.492  16.264  1.00  0.00              
ATOM    101  CA  LEU   101      28.518   4.399  17.821  1.00  0.00              
ATOM    102  CA  GLN   102      27.474   6.814  15.077  1.00  0.00              
ATOM    103  CA  THR   103      23.855   5.760  15.609  1.00  0.00              
ATOM    104  CA  SER   104      22.883   5.329  19.208  1.00  0.00              
ATOM    105  CA  ILE   105      20.031   2.994  19.961  1.00  0.00              
ATOM    106  CA  ALA   106      18.097   3.514  23.110  1.00  0.00              
ATOM    107  CA  GLU   107      15.024   1.470  23.901  1.00  0.00              
ATOM    108  CA  GLY   108      13.154   1.984  20.638  1.00  0.00              
ATOM    109  CA  GLU   109      14.654   5.434  20.088  1.00  0.00              
ATOM    110  CA  MET   110      17.106   6.009  17.462  1.00  0.00              
ATOM    111  CA  LYS   111      19.680   8.708  17.754  1.00  0.00              
ATOM    112  CA  CYS   112      22.051   9.572  14.973  1.00  0.00              
ATOM    113  CA  ARG   113      25.599  10.392  16.119  1.00  0.00              
ATOM    114  CA  ASN   114      26.484  12.474  13.038  1.00  0.00              
ATOM    115  CA  CYS   115      23.446  14.534  12.319  1.00  0.00              
ATOM    116  CA  GLY   116      21.614  14.460  15.606  1.00  0.00              
ATOM    117  CA  HIS   117      18.292  13.493  14.096  1.00  0.00              
ATOM    118  CA  ILE   118      16.009  11.678  16.442  1.00  0.00              
ATOM    119  CA  TYR   119      13.930   8.857  15.167  1.00  0.00              
ATOM    120  CA  TYR   120      11.296   7.153  17.273  1.00  0.00              
ATOM    121  CA  ILE   121      10.595   3.556  16.499  1.00  0.00              
ATOM    122  CA  LYS   122       7.684   1.845  17.918  1.00  0.00              
ATOM    123  CA  ASN   123       6.826  -0.947  15.426  1.00  0.00              
ATOM    124  CA  GLY   124      10.267  -2.247  14.456  1.00  0.00              
ATOM    125  CA  ILE   125      11.925  -2.433  17.895  1.00  0.00              
ATOM    126  CA  PRO   126      12.886  -6.121  18.014  1.00  0.00              
ATOM    127  CA  ASN   127      14.174  -5.758  14.433  1.00  0.00              
ATOM    128  CA  LEU   128      16.262  -2.564  14.855  1.00  0.00              
ATOM    129  CA  LEU   129      15.220  -0.545  11.852  1.00  0.00              
ATOM    130  CA  LEU   130      17.921   1.907  10.657  1.00  0.00              
ATOM    131  CA  PRO   131      16.797   5.177   9.154  1.00  0.00              
ATOM    132  CA  PRO   132      18.002   6.162   5.734  1.00  0.00              
ATOM    133  CA  HIS   133      20.064   9.113   7.911  1.00  0.00              
ATOM    134  CA  LEU   134      21.971   5.962   7.639  1.00  0.00              
ATOM    135  CA  VAL   135      22.863   2.482   9.841  1.00  0.00              
TER                                                                             
END
