
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   14 (  112),  selected   14 , name T0318TS193_5_2-D1
# Molecule2: number of CA atoms  154 ( 1200),  selected  154 , name T0318_D1.pdb
# PARAMETERS: T0318TS193_5_2-D1.T0318_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      T       2           -
LGA    -       -      Q       3           -
LGA    -       -      V       4           -
LGA    -       -      L       5           -
LGA    -       -      V       6           -
LGA    -       -      R       7           -
LGA    -       -      N       8           -
LGA    -       -      G       9           -
LGA    -       -      I      10           -
LGA    -       -      Q      11           -
LGA    -       -      A      12           -
LGA    -       -      V      13           -
LGA    R     142      G      14          3.281
LGA    E     143      D      15          4.155
LGA    L     144      G      16          1.726
LGA    N     145      L      17          3.607
LGA    V     146      T      18          0.822
LGA    N     147      S      19          1.166
LGA    I     148      L      20          1.212
LGA    D     149      I      21          2.703
LGA    V     150      I      22          1.505
LGA    V     151      V      23          1.397
LGA    C     152      G      24          3.512
LGA    -       -      K      25           -
LGA    -       -      K      26           -
LGA    -       -      S      27           -
LGA    -       -      V      28           -
LGA    -       -      L      29           -
LGA    -       -      K      30           -
LGA    -       -      N      31           -
LGA    -       -      V      32           -
LGA    -       -      T      33           -
LGA    -       -      F      34           -
LGA    -       -      E      35           -
LGA    -       -      G      36           -
LGA    -       -      K      37           -
LGA    -       -      F      38           -
LGA    -       -      K      39           -
LGA    -       -      E      40           -
LGA    -       -      V      41           -
LGA    -       -      A      42           -
LGA    -       -      Q      43           -
LGA    -       -      K      44           -
LGA    -       -      F      45           -
LGA    -       -      V      46           -
LGA    -       -      T      47           -
LGA    -       -      D      48           -
LGA    -       -      G      49           -
LGA    -       -      D      50           -
LGA    -       -      S      51           -
LGA    -       -      W      52           -
LGA    -       -      N      53           -
LGA    -       -      S      54           -
LGA    -       -      M      55           -
LGA    -       -      I      56           -
LGA    -       -      S      57           -
LGA    -       -      R      58           -
LGA    -       -      I      59           -
LGA    -       -      P      60           -
LGA    -       -      A      61           -
LGA    -       -      S      62           -
LGA    -       -      G      63           -
LGA    -       -      R      64           -
LGA    -       -      H      65           -
LGA    -       -      P      66           -
LGA    -       -      L      67           -
LGA    -       -      H      68           -
LGA    -       -      Y      69           -
LGA    -       -      E      70           -
LGA    -       -      L      71           -
LGA    -       -      A      72           -
LGA    -       -      H      73           -
LGA    -       -      L      74           -
LGA    -       -      I      75           -
LGA    -       -      T      76           -
LGA    -       -      V      77           -
LGA    -       -      P      78           -
LGA    -       -      D      79           -
LGA    -       -      A      80           -
LGA    -       -      S      81           -
LGA    -       -      S      82           -
LGA    -       -      R      83           -
LGA    -       -      G      84           -
LGA    -       -      N      85           -
LGA    -       -      T      86           -
LGA    -       -      P      87           -
LGA    -       -      T      88           -
LGA    -       -      N      89           -
LGA    -       -      A      90           -
LGA    -       -      H      91           -
LGA    -       -      S      92           -
LGA    -       -      I      93           -
LGA    -       -      Y      94           -
LGA    -       -      K      95           -
LGA    -       -      E      96           -
LGA    -       -      L      97           -
LGA    -       -      K      98           -
LGA    -       -      P      99           -
LGA    -       -      I     100           -
LGA    -       -      N     101           -
LGA    -       -      Y     102           -
LGA    -       -      P     103           -
LGA    -       -      E     104           -
LGA    -       -      D     105           -
LGA    -       -      T     106           -
LGA    -       -      K     107           -
LGA    -       -      N     108           -
LGA    -       -      V     109           -
LGA    -       -      H     110           -
LGA    -       -      F     111           -
LGA    -       -      V     112           -
LGA    -       -      L     113           -
LGA    -       -      F     114           -
LGA    D     153      A     115          1.937
LGA    K     154      E     116          2.241
LGA    L     155      Y     117          3.786
LGA    -       -      P     118           -
LGA    -       -      D     119           -
LGA    -       -      V     120           -
LGA    -       -      L     121           -
LGA    -       -      S     122           -
LGA    -       -      H     123           -
LGA    -       -      V     124           -
LGA    -       -      A     125           -
LGA    -       -      A     126           -
LGA    -       -      I     127           -
LGA    -       -      A     128           -
LGA    -       -      R     129           -
LGA    -       -      T     130           -
LGA    -       -      F     131           -
LGA    -       -      C     132           -
LGA    -       -      K     133           -
LGA    -       -      F     134           -
LGA    -       -      S     135           -
LGA    -       -      M     136           -
LGA    -       -      K     137           -
LGA    -       -      T     138           -
LGA    -       -      S     139           -
LGA    -       -      G     140           -
LGA    -       -      I     141           -
LGA    -       -      R     142           -
LGA    -       -      E     143           -
LGA    -       -      L     144           -
LGA    -       -      N     145           -
LGA    -       -      V     146           -
LGA    -       -      N     147           -
LGA    -       -      I     148           -
LGA    -       -      D     149           -
LGA    -       -      V     150           -
LGA    -       -      V     151           -
LGA    -       -      C     152           -
LGA    -       -      D     153           -
LGA    -       -      K     154           -
LGA    -       -      L     155           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   14  154    5.0     14    2.60     7.14      7.148     0.519

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.053662 * X  +  -0.350146 * Y  +  -0.935157 * Z  +  36.823315
  Y_new =  -0.254139 * X  +  -0.900879 * Y  +   0.351895 * Z  +  47.023708
  Z_new =  -0.965678 * X  +   0.256544 * Y  +  -0.040643 * Z  +  14.864164 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.727916   -1.413677  [ DEG:    99.0023    -80.9977 ]
  Theta =   1.308040    1.833552  [ DEG:    74.9452    105.0548 ]
  Phi   =  -1.778891    1.362701  [ DEG:  -101.9230     78.0770 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0318TS193_5_2-D1                             
REMARK     2: T0318_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0318TS193_5_2-D1.T0318_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   14  154   5.0   14   2.60    7.14   7.148
REMARK  ---------------------------------------------------------- 
MOLECULE T0318TS193_5_2-D1
REMARK PARENT number 2
PFRMAT TS
TARGET T0318
PARENT N/A
ATOM   1097  N   ARG   142      45.451  43.093  12.433  1.00  0.00
ATOM   1098  CA  ARG   142      44.368  43.175  13.404  1.00  0.00
ATOM   1099  C   ARG   142      44.145  44.611  13.862  1.00  0.00
ATOM   1100  O   ARG   142      43.007  45.059  14.002  1.00  0.00
ATOM   1101  CB  ARG   142      44.688  42.328  14.638  1.00  0.00
ATOM   1102  CG  ARG   142      44.635  40.830  14.393  1.00  0.00
ATOM   1103  CD  ARG   142      45.035  40.053  15.637  1.00  0.00
ATOM   1104  NE  ARG   142      45.016  38.609  15.410  1.00  0.00
ATOM   1105  CZ  ARG   142      45.393  37.706  16.309  1.00  0.00
ATOM   1106  NH1 ARG   142      45.342  36.414  16.014  1.00  0.00
ATOM   1107  NH2 ARG   142      45.820  38.097  17.502  1.00  0.00
ATOM   1108  N   GLU   143      45.239  45.329  14.095  1.00  0.00
ATOM   1109  CA  GLU   143      45.164  46.708  14.560  1.00  0.00
ATOM   1110  C   GLU   143      44.260  47.545  13.665  1.00  0.00
ATOM   1111  O   GLU   143      43.328  48.194  14.140  1.00  0.00
ATOM   1112  CB  GLU   143      46.554  47.348  14.562  1.00  0.00
ATOM   1113  CG  GLU   143      46.575  48.785  15.060  1.00  0.00
ATOM   1114  CD  GLU   143      47.971  49.372  15.086  1.00  0.00
ATOM   1115  OE1 GLU   143      48.928  48.645  14.747  1.00  0.00
ATOM   1116  OE2 GLU   143      48.110  50.560  15.446  1.00  0.00
ATOM   1117  N   LEU   144      44.539  47.524  12.365  1.00  0.00
ATOM   1118  CA  LEU   144      43.734  48.259  11.397  1.00  0.00
ATOM   1119  C   LEU   144      42.281  47.806  11.432  1.00  0.00
ATOM   1120  O   LEU   144      41.363  48.625  11.368  1.00  0.00
ATOM   1121  CB  LEU   144      44.266  48.038   9.980  1.00  0.00
ATOM   1122  CG  LEU   144      45.718  48.449   9.729  1.00  0.00
ATOM   1123  CD1 LEU   144      46.151  48.064   8.324  1.00  0.00
ATOM   1124  CD2 LEU   144      45.885  49.953   9.882  1.00  0.00
ATOM   1125  N   ASN   145      42.431  48.610  13.348  1.00  0.00
ATOM   1126  CA  ASN   145      41.536  49.581  13.965  1.00  0.00
ATOM   1127  C   ASN   145      42.316  50.743  14.567  1.00  0.00
ATOM   1128  O   ASN   145      43.112  50.558  15.488  1.00  0.00
ATOM   1129  CB  ASN   145      40.723  48.926  15.084  1.00  0.00
ATOM   1130  CG  ASN   145      39.606  49.818  15.591  1.00  0.00
ATOM   1131  OD1 ASN   145      39.135  50.704  14.878  1.00  0.00
ATOM   1132  ND2 ASN   145      39.181  49.586  16.827  1.00  0.00
ATOM   1133  N   VAL   146      44.076  49.379  17.145  1.00  0.00
ATOM   1134  CA  VAL   146      42.952  48.465  17.300  1.00  0.00
ATOM   1135  C   VAL   146      42.671  48.178  18.769  1.00  0.00
ATOM   1136  O   VAL   146      43.550  47.726  19.502  1.00  0.00
ATOM   1137  CB  VAL   146      43.222  47.115  16.609  1.00  0.00
ATOM   1138  CG1 VAL   146      42.080  46.145  16.867  1.00  0.00
ATOM   1139  CG2 VAL   146      43.361  47.304  15.106  1.00  0.00
ATOM   1140  N   ASN   147      41.441  48.447  19.194  1.00  0.00
ATOM   1141  CA  ASN   147      41.042  48.219  20.578  1.00  0.00
ATOM   1142  C   ASN   147      39.700  47.502  20.654  1.00  0.00
ATOM   1143  O   ASN   147      38.685  48.014  20.181  1.00  0.00
ATOM   1144  CB  ASN   147      40.913  49.548  21.325  1.00  0.00
ATOM   1145  CG  ASN   147      40.559  49.363  22.787  1.00  0.00
ATOM   1146  OD1 ASN   147      39.477  48.876  23.117  1.00  0.00
ATOM   1147  ND2 ASN   147      41.472  49.751  23.670  1.00  0.00
ATOM   1148  N   ILE   148      39.700  46.316  21.253  1.00  0.00
ATOM   1149  CA  ILE   148      38.480  45.533  21.402  1.00  0.00
ATOM   1150  C   ILE   148      37.963  45.583  22.834  1.00  0.00
ATOM   1151  O   ILE   148      38.518  44.943  23.726  1.00  0.00
ATOM   1152  CB  ILE   148      38.713  44.053  21.045  1.00  0.00
ATOM   1153  CG1 ILE   148      39.763  43.439  21.973  1.00  0.00
ATOM   1154  CG2 ILE   148      39.203  43.922  19.611  1.00  0.00
ATOM   1155  CD1 ILE   148      39.893  41.937  21.840  1.00  0.00
ATOM   1156  N   ASP   149      38.144  42.979  22.694  1.00  0.00
ATOM   1157  CA  ASP   149      36.819  42.797  23.273  1.00  0.00
ATOM   1158  C   ASP   149      36.779  41.576  24.183  1.00  0.00
ATOM   1159  O   ASP   149      37.037  40.455  23.745  1.00  0.00
ATOM   1160  CB  ASP   149      35.774  42.602  22.172  1.00  0.00
ATOM   1161  CG  ASP   149      34.359  42.550  22.713  1.00  0.00
ATOM   1162  OD1 ASP   149      34.197  42.557  23.951  1.00  0.00
ATOM   1163  OD2 ASP   149      33.414  42.503  21.899  1.00  0.00
ATOM   1164  N   VAL   150      36.453  41.800  25.451  1.00  0.00
ATOM   1165  CA  VAL   150      36.273  40.708  26.400  1.00  0.00
ATOM   1166  C   VAL   150      34.901  40.771  27.059  1.00  0.00
ATOM   1167  O   VAL   150      34.525  41.790  27.639  1.00  0.00
ATOM   1168  CB  VAL   150      37.328  40.754  27.520  1.00  0.00
ATOM   1169  CG1 VAL   150      38.707  40.426  26.967  1.00  0.00
ATOM   1170  CG2 VAL   150      37.379  42.139  28.148  1.00  0.00
ATOM   1171  N   VAL   151      32.760  40.739  28.556  1.00  0.00
ATOM   1172  CA  VAL   151      32.483  39.934  27.372  1.00  0.00
ATOM   1173  C   VAL   151      31.150  39.207  27.501  1.00  0.00
ATOM   1174  O   VAL   151      30.677  38.948  28.607  1.00  0.00
ATOM   1175  CB  VAL   151      33.572  38.869  27.147  1.00  0.00
ATOM   1176  CG1 VAL   151      33.124  37.863  26.097  1.00  0.00
ATOM   1177  CG2 VAL   151      34.862  39.519  26.669  1.00  0.00
ATOM   1178  N   CYS   152      30.549  38.879  26.362  1.00  0.00
ATOM   1179  CA  CYS   152      29.308  38.113  26.344  1.00  0.00
ATOM   1180  C   CYS   152      29.420  36.905  25.423  1.00  0.00
ATOM   1181  O   CYS   152      29.807  37.031  24.262  1.00  0.00
ATOM   1182  CB  CYS   152      28.149  38.982  25.848  1.00  0.00
ATOM   1183  SG  CYS   152      27.781  40.406  26.898  1.00  0.00
ATOM   1184  N   ASP   153      29.079  35.733  25.949  1.00  0.00
ATOM   1185  CA  ASP   153      29.163  34.495  25.182  1.00  0.00
ATOM   1186  C   ASP   153      28.122  34.467  24.069  1.00  0.00
ATOM   1187  O   ASP   153      26.994  34.925  24.249  1.00  0.00
ATOM   1188  CB  ASP   153      28.921  33.287  26.089  1.00  0.00
ATOM   1189  CG  ASP   153      29.276  31.975  25.417  1.00  0.00
ATOM   1190  OD1 ASP   153      29.895  32.011  24.333  1.00  0.00
ATOM   1191  OD2 ASP   153      28.935  30.910  25.975  1.00  0.00
ATOM   1192  N   LYS   154      27.365  33.401  25.862  1.00  0.00
ATOM   1193  CA  LYS   154      26.005  32.878  25.841  1.00  0.00
ATOM   1194  C   LYS   154      25.014  33.892  26.398  1.00  0.00
ATOM   1195  O   LYS   154      23.865  33.956  25.962  1.00  0.00
ATOM   1196  CB  LYS   154      25.906  31.606  26.685  1.00  0.00
ATOM   1197  CG  LYS   154      26.041  31.841  28.181  1.00  0.00
ATOM   1198  CD  LYS   154      26.052  30.529  28.948  1.00  0.00
ATOM   1199  CE  LYS   154      26.274  30.761  30.434  1.00  0.00
ATOM   1200  NZ  LYS   154      26.260  29.486  31.203  1.00  0.00
ATOM   1201  N   LEU   155      24.014  32.084  27.202  1.00  0.00
ATOM   1202  CA  LEU   155      22.589  31.789  27.130  1.00  0.00
ATOM   1203  C   LEU   155      21.763  32.891  27.780  1.00  0.00
ATOM   1204  O   LEU   155      20.616  33.127  27.402  1.00  0.00
ATOM   1205  CB  LEU   155      22.277  30.475  27.850  1.00  0.00
ATOM   1206  CG  LEU   155      22.812  29.200  27.197  1.00  0.00
ATOM   1207  CD1 LEU   155      22.578  27.995  28.097  1.00  0.00
ATOM   1208  CD2 LEU   155      22.118  28.943  25.868  1.00  0.00
TER
END
