
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  106 (  106),  selected  106 , name T0314TS599_5
# Molecule2: number of CA atoms  106 ( 1704),  selected  106 , name T0314.pdb
# PARAMETERS: T0314TS599_5.T0314.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           #
LGA    S       2      S       2           #
LGA    I       3      I       3           #
LGA    T       4      T       4          4.061
LGA    S       5      S       5          2.249
LGA    T       6      T       6          0.502
LGA    D       7      D       7          0.471
LGA    I       8      I       8          1.474
LGA    C       9      C       9          2.354
LGA    Q      10      -       -           -
LGA    A      11      Q      10          3.214
LGA    A      12      A      11          3.420
LGA    D      13      A      12          2.004
LGA    A      14      D      13          0.447
LGA    L      15      A      14          2.799
LGA    K      16      L      15          3.826
LGA    G      17      -       -           -
LGA    F      18      K      16          2.357
LGA    V      19      G      17          3.043
LGA    G      20      F      18          4.566
LGA    F      21      V      19          4.296
LGA    N      22      G      20          4.757
LGA    R      23      F      21           #
LGA    -       -      N      22           -
LGA    -       -      R      23           -
LGA    -       -      K      24           -
LGA    -       -      T      25           -
LGA    K      24      G      26           #
LGA    T      25      R      27          1.686
LGA    G      26      Y      28          2.911
LGA    R      27      I      29          0.386
LGA    Y      28      V      30          1.396
LGA    I      29      R      31          4.301
LGA    V      30      F      32          3.949
LGA    R      31      -       -           -
LGA    F      32      -       -           -
LGA    S      33      -       -           -
LGA    E      34      -       -           -
LGA    D      35      -       -           -
LGA    S      36      -       -           -
LGA    F      37      -       -           -
LGA    G      38      -       -           -
LGA    M      39      -       -           -
LGA    D      40      -       -           -
LGA    V      41      S      33           #
LGA    A      42      E      34           -
LGA    D      43      D      35           -
LGA    D      44      -       -           -
LGA    S      45      S      36          3.307
LGA    I      46      F      37          1.972
LGA    T      47      G      38           #
LGA    -       -      M      39           -
LGA    -       -      D      40           -
LGA    P      48      V      41          4.086
LGA    T      49      A      42           #
LGA    -       -      D      43           -
LGA    -       -      D      44           -
LGA    S      50      S      45          1.635
LGA    E      51      I      46          2.828
LGA    F      52      T      47          3.975
LGA    V      53      P      48           #
LGA    W      54      T      49           -
LGA    S      55      S      50           -
LGA    S      56      E      51           -
LGA    V      57      F      52           -
LGA    R      58      V      53           -
LGA    D      59      W      54           -
LGA    D      60      S      55           -
LGA    V      61      S      56           -
LGA    M      62      V      57           -
LGA    R      63      R      58           -
LGA    L      64      D      59           -
LGA    G      65      D      60           -
LGA    R      66      V      61           -
LGA    E      67      M      62           -
LGA    Q      68      R      63           -
LGA    L      69      L      64           -
LGA    -       -      G      65           -
LGA    -       -      R      66           -
LGA    -       -      E      67           -
LGA    -       -      Q      68           -
LGA    -       -      L      69           -
LGA    -       -      Q      70           -
LGA    -       -      I      71           -
LGA    -       -      L      72           -
LGA    -       -      L      73           -
LGA    -       -      E      74           -
LGA    Q      70      Q      75          4.815
LGA    I      71      N      76           #
LGA    L      72      -       -           -
LGA    L      73      I      77          4.911
LGA    E      74      N      78          3.462
LGA    Q      75      E      79          2.604
LGA    N      76      R      80          1.971
LGA    I      77      L      81          2.498
LGA    N      78      N      82          3.467
LGA    E      79      I      83           #
LGA    R      80      -       -           -
LGA    L      81      G      84          2.903
LGA    N      82      E      85          3.221
LGA    I      83      P      86          4.855
LGA    -       -      L      87           -
LGA    G      84      L      88          4.344
LGA    E      85      V      89          1.104
LGA    P      86      Y      90          2.466
LGA    L      87      L      91          4.286
LGA    L      88      R      92           #
LGA    V      89      R      93          3.056
LGA    Y      90      Q      94          2.245
LGA    L      91      D      95          4.681
LGA    R      92      L      96          3.241
LGA    R      93      P      97          3.887
LGA    Q      94      E      98          3.110
LGA    D      95      -       -           -
LGA    L      96      I      99          1.198
LGA    P      97      -       -           -
LGA    E      98      -       -           -
LGA    I      99      T     100          3.352
LGA    T     100      A     101          1.944
LGA    A     101      Q     102          2.009
LGA    Q     102      -       -           -
LGA    R     103      R     103          3.809
LGA    Q     104      Q     104           #
LGA    L     105      L     105           -
LGA    R     106      R     106           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  106  106    5.0     54    3.17    24.07     28.083     1.652

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.724268 * X  +   0.681657 * Y  +   0.103824 * Z  +  19.424583
  Y_new =   0.667961 * X  +   0.656267 * Y  +   0.350914 * Z  +   5.999290
  Z_new =   0.171067 * X  +   0.323506 * Y  +  -0.930634 * Z  + -12.233584 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.807040   -0.334552  [ DEG:   160.8316    -19.1684 ]
  Theta =  -0.171913   -2.969680  [ DEG:    -9.8499   -170.1501 ]
  Phi   =   2.396616   -0.744977  [ DEG:   137.3160    -42.6840 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0314TS599_5                                  
REMARK     2: T0314.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0314TS599_5.T0314.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  106  106   5.0   54   3.17   24.07  28.083
REMARK  ---------------------------------------------------------- 
MOLECULE T0314TS599_5
PFRMAT TS                                                                       
TARGET T0314                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1       8.751   3.993   2.952  1.00  0.00              
ATOM      2  CA  SER     2       6.284   7.402   3.009  1.00  0.00              
ATOM      3  CA  ILE     3       4.183  10.313   1.513  1.00  0.00              
ATOM      4  CA  THR     4       2.130  12.937  -0.566  1.00  0.00              
ATOM      5  CA  SER     5       1.996  12.349  -4.280  1.00  0.00              
ATOM      6  CA  THR     6       4.286  15.366  -4.942  1.00  0.00              
ATOM      7  CA  ASP     7       7.017  13.935  -2.746  1.00  0.00              
ATOM      8  CA  ILE     8       6.769  10.519  -4.503  1.00  0.00              
ATOM      9  CA  CYS     9       6.931  11.977  -8.025  1.00  0.00              
ATOM     10  CA  GLN    10       9.999  14.085  -7.137  1.00  0.00              
ATOM     11  CA  ALA    11      11.704  11.032  -5.529  1.00  0.00              
ATOM     12  CA  ALA    12      10.920   8.946  -8.562  1.00  0.00              
ATOM     13  CA  ASP    13      12.435  11.516 -10.926  1.00  0.00              
ATOM     14  CA  ALA    14      15.607  11.717  -8.822  1.00  0.00              
ATOM     15  CA  LEU    15      15.967   7.924  -8.657  1.00  0.00              
ATOM     16  CA  LYS    16      15.535   7.655 -12.387  1.00  0.00              
ATOM     17  CA  GLY    17      18.223  10.244 -13.004  1.00  0.00              
ATOM     18  CA  PHE    18      20.847   8.574 -10.712  1.00  0.00              
ATOM     19  CA  VAL    19      20.193   5.265 -12.441  1.00  0.00              
ATOM     20  CA  GLY    20      19.731   5.519 -16.180  1.00  0.00              
ATOM     21  CA  PHE    21      18.143   2.683 -18.075  1.00  0.00              
ATOM     22  CA  ASN    22      19.291   1.721 -21.505  1.00  0.00              
ATOM     23  CA  ARG    23      16.420   0.142 -23.275  1.00  0.00              
ATOM     24  CA  LYS    24      18.093  -1.564 -26.179  1.00  0.00              
ATOM     25  CA  THR    25      20.531  -3.739 -24.340  1.00  0.00              
ATOM     26  CA  GLY    26      19.049  -4.174 -20.831  1.00  0.00              
ATOM     27  CA  ARG    27      21.995  -2.412 -19.269  1.00  0.00              
ATOM     28  CA  TYR    28      21.760   0.080 -16.364  1.00  0.00              
ATOM     29  CA  ILE    29      23.777   3.225 -16.610  1.00  0.00              
ATOM     30  CA  VAL    30      24.995   5.063 -13.568  1.00  0.00              
ATOM     31  CA  ARG    31      25.653   8.775 -13.860  1.00  0.00              
ATOM     32  CA  PHE    32      28.483  10.261 -11.906  1.00  0.00              
ATOM     33  CA  SER    33      29.354  13.965 -12.080  1.00  0.00              
ATOM     34  CA  GLU    34      33.137  14.090 -12.553  1.00  0.00              
ATOM     35  CA  ASP    35      33.960  15.030  -9.016  1.00  0.00              
ATOM     36  CA  SER    36      31.514  12.924  -7.058  1.00  0.00              
ATOM     37  CA  PHE    37      32.482   9.429  -8.248  1.00  0.00              
ATOM     38  CA  GLY    38      35.761   9.533 -10.127  1.00  0.00              
ATOM     39  CA  MET    39      36.231   6.656 -12.334  1.00  0.00              
ATOM     40  CA  ASP    40      38.394   4.194 -14.111  1.00  0.00              
ATOM     41  CA  VAL    41      36.731   2.875 -17.283  1.00  0.00              
ATOM     42  CA  ALA    42      38.181  -0.608 -17.855  1.00  0.00              
ATOM     43  CA  ASP    43      37.030  -3.025 -20.495  1.00  0.00              
ATOM     44  CA  ASP    44      34.045  -5.006 -19.129  1.00  0.00              
ATOM     45  CA  SER    45      32.410  -1.878 -17.791  1.00  0.00              
ATOM     46  CA  ILE    46      32.294   0.753 -20.474  1.00  0.00              
ATOM     47  CA  THR    47      29.098   2.688 -20.444  1.00  0.00              
ATOM     48  CA  PRO    48      27.680   3.503 -23.904  1.00  0.00              
ATOM     49  CA  THR    49      23.888   3.458 -23.623  1.00  0.00              
ATOM     50  CA  SER    50      23.200   7.001 -24.789  1.00  0.00              
ATOM     51  CA  GLU    51      26.271   8.288 -22.936  1.00  0.00              
ATOM     52  CA  PHE    52      26.146   6.604 -19.629  1.00  0.00              
ATOM     53  CA  VAL    53      28.740   7.501 -17.067  1.00  0.00              
ATOM     54  CA  TRP    54      29.633   5.008 -14.491  1.00  0.00              
ATOM     55  CA  SER    55      31.000   5.981 -11.141  1.00  0.00              
ATOM     56  CA  SER    56      32.766   3.359  -9.002  1.00  0.00              
ATOM     57  CA  VAL    57      36.276   4.489  -8.218  1.00  0.00              
ATOM     58  CA  ARG    58      37.680   1.286  -6.625  1.00  0.00              
ATOM     59  CA  ASP    59      41.362   2.009  -7.138  1.00  0.00              
ATOM     60  CA  ASP    60      41.102   2.311 -10.910  1.00  0.00              
ATOM     61  CA  VAL    61      39.209  -0.832 -11.708  1.00  0.00              
ATOM     62  CA  MET    62      36.277  -1.283 -13.983  1.00  0.00              
ATOM     63  CA  ARG    63      35.326  -4.817 -15.170  1.00  0.00              
ATOM     64  CA  LEU    64      31.664  -5.632 -14.811  1.00  0.00              
ATOM     65  CA  GLY    65      29.842  -8.055 -17.008  1.00  0.00              
ATOM     66  CA  ARG    66      26.328  -7.427 -18.178  1.00  0.00              
ATOM     67  CA  GLU    67      24.730  -9.832 -15.694  1.00  0.00              
ATOM     68  CA  GLN    68      26.676  -8.230 -12.823  1.00  0.00              
ATOM     69  CA  LEU    69      25.788  -4.658 -13.765  1.00  0.00              
ATOM     70  CA  GLN    70      22.097  -5.582 -14.014  1.00  0.00              
ATOM     71  CA  ILE    71      22.163  -7.150 -10.593  1.00  0.00              
ATOM     72  CA  LEU    72      23.854  -4.152  -8.911  1.00  0.00              
ATOM     73  CA  LEU    73      21.503  -1.633 -10.476  1.00  0.00              
ATOM     74  CA  GLU    74      18.044  -3.109  -9.722  1.00  0.00              
ATOM     75  CA  GLN    75      18.758  -3.631  -6.071  1.00  0.00              
ATOM     76  CA  ASN    76      20.490  -0.367  -5.422  1.00  0.00              
ATOM     77  CA  ILE    77      18.019   2.101  -7.019  1.00  0.00              
ATOM     78  CA  ASN    78      14.926   0.592  -5.492  1.00  0.00              
ATOM     79  CA  GLU    79      16.489   0.592  -2.011  1.00  0.00              
ATOM     80  CA  ARG    80      17.698   4.226  -1.991  1.00  0.00              
ATOM     81  CA  LEU    81      14.262   5.442  -3.095  1.00  0.00              
ATOM     82  CA  ASN    82      11.399   3.447  -1.481  1.00  0.00              
ATOM     83  CA  ILE    83       9.233   2.408  -4.378  1.00  0.00              
ATOM     84  CA  GLY    84       5.823   1.399  -3.227  1.00  0.00              
ATOM     85  CA  GLU    85       3.477   3.045  -5.773  1.00  0.00              
ATOM     86  CA  PRO    86       3.847   2.813  -9.506  1.00  0.00              
ATOM     87  CA  LEU    87       5.811   5.916 -10.645  1.00  0.00              
ATOM     88  CA  LEU    88       3.754   7.019 -13.635  1.00  0.00              
ATOM     89  CA  VAL    89       0.496   6.490 -11.706  1.00  0.00              
ATOM     90  CA  TYR    90       1.444   8.115  -8.367  1.00  0.00              
ATOM     91  CA  LEU    91       2.585  11.152 -10.455  1.00  0.00              
ATOM     92  CA  ARG    92      -0.180  11.465 -13.069  1.00  0.00              
ATOM     93  CA  ARG    93       1.748  11.067 -16.342  1.00  0.00              
ATOM     94  CA  GLN    94       0.839  14.545 -17.575  1.00  0.00              
ATOM     95  CA  ASP    95       2.014  16.174 -14.340  1.00  0.00              
ATOM     96  CA  LEU    96       5.509  14.667 -14.390  1.00  0.00              
ATOM     97  CA  PRO    97       6.542  16.222 -17.737  1.00  0.00              
ATOM     98  CA  GLU    98       5.323  19.619 -16.486  1.00  0.00              
ATOM     99  CA  ILE    99       7.204  19.456 -13.161  1.00  0.00              
ATOM    100  CA  THR   100      10.386  18.495 -15.008  1.00  0.00              
ATOM    101  CA  ALA   101       9.913  21.399 -17.456  1.00  0.00              
ATOM    102  CA  GLN   102       9.321  24.150 -14.884  1.00  0.00              
ATOM    103  CA  ARG   103      12.431  23.196 -12.848  1.00  0.00              
ATOM    104  CA  GLN   104      14.438  23.289 -16.546  1.00  0.00              
ATOM    105  CA  LEU   105      14.178  23.628 -12.975  1.00  0.00              
ATOM    106  CA  ARG   106      13.265  26.448 -10.612  1.00  0.00              
TER                                                                             
END
