
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  102 (  102),  selected  102 , name T0300TS599_5
# Molecule2: number of CA atoms   89 (  695),  selected   89 , name T0300
# PARAMETERS: T0300TS599_5.T0300  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      D       7           -
LGA    A       2      K       8           -
LGA    S       3      T       9           -
LGA    K       4      Y      10           -
LGA    K       5      E      11           -
LGA    P       6      E      12           -
LGA    D       7      M      13           -
LGA    K       8      V      14           -
LGA    T       9      K      15           -
LGA    Y      10      E      16           -
LGA    E      11      V      17           -
LGA    E      12      -       -           -
LGA    M      13      -       -           -
LGA    V      14      -       -           -
LGA    K      15      -       -           -
LGA    E      16      -       -           -
LGA    V      17      -       -           -
LGA    E      18      -       -           -
LGA    R      19      -       -           -
LGA    L      20      -       -           -
LGA    K      21      -       -           -
LGA    L      22      -       -           -
LGA    E      23      -       -           -
LGA    N      24      -       -           -
LGA    K      25      -       -           -
LGA    T      26      -       -           -
LGA    L      27      -       -           -
LGA    K      28      -       -           -
LGA    Q      29      -       -           -
LGA    K      30      -       -           -
LGA    V      31      -       -           -
LGA    K      32      -       -           -
LGA    S      33      -       -           -
LGA    S      34      -       -           -
LGA    G      35      -       -           -
LGA    A      36      -       -           -
LGA    V      37      -       -           -
LGA    S      38      -       -           -
LGA    S      39      E      18           #
LGA    D      40      R      19          3.328
LGA    -       -      L      20           -
LGA    D      41      K      21          2.585
LGA    S      42      L      22           #
LGA    -       -      E      23           -
LGA    -       -      N      24           -
LGA    -       -      K      25           -
LGA    -       -      T      26           -
LGA    -       -      L      27           -
LGA    -       -      K      28           -
LGA    -       -      Q      29           -
LGA    -       -      K      30           -
LGA    -       -      V      31           -
LGA    -       -      S      39           -
LGA    -       -      D      40           -
LGA    -       -      D      41           -
LGA    I      43      S      42           #
LGA    L      44      I      43           #
LGA    T      45      L      44          4.113
LGA    -       -      T      45           -
LGA    -       -      A      46           -
LGA    -       -      A      47           -
LGA    -       -      K      48           -
LGA    A      46      R      49          3.709
LGA    A      47      E      50          1.925
LGA    K      48      S      51          3.517
LGA    R      49      I      52          3.488
LGA    E      50      I      53          1.684
LGA    S      51      V      54          1.455
LGA    I      52      S      55          2.363
LGA    I      53      S      56          2.030
LGA    V      54      S      57          1.166
LGA    S      55      R      58          1.384
LGA    S      56      A      59          1.021
LGA    S      57      L      60          1.819
LGA    R      58      G      61          2.186
LGA    A      59      A      62          1.533
LGA    L      60      V      63          1.186
LGA    G      61      A      64          2.232
LGA    A      62      M      65          2.420
LGA    V      63      R      66          1.583
LGA    A      64      K      67          1.484
LGA    M      65      I      68          1.976
LGA    R      66      E      69          1.748
LGA    K      67      A      70          1.200
LGA    I      68      K      71          1.421
LGA    E      69      V      72          1.634
LGA    A      70      R      73          1.140
LGA    K      71      S      74          0.987
LGA    V      72      R      75          0.865
LGA    R      73      A      76          0.890
LGA    S      74      A      77          0.841
LGA    R      75      K      78          2.546
LGA    A      76      A      79          4.111
LGA    A      77      V      80          3.900
LGA    K      78      -       -           -
LGA    A      79      -       -           -
LGA    V      80      -       -           -
LGA    T      81      T      81          5.351
LGA    E      82      E      82          4.103
LGA    Q      83      Q      83          1.743
LGA    E      84      E      84          3.135
LGA    L      85      L      85          2.420
LGA    T      86      T      86          0.762
LGA    S      87      S      87          1.918
LGA    L      88      L      88          1.769
LGA    L      89      L      89          1.717
LGA    Q      90      Q      90          3.126
LGA    S      91      S      91          4.308
LGA    L      92      L      92          4.320
LGA    -       -      T      93           -
LGA    T      93      L      94          3.650
LGA    L      94      R      95           #
LGA    R      95      V      96          3.557
LGA    V      96      D      97           #
LGA    D      97      V      98          2.073
LGA    V      98      S      99          4.823
LGA    S      99      M     100          1.179
LGA    M     100      E     101           #
LGA    E     101      E     102           -
LGA    E     102      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  102   89    5.0     52    2.62    26.92     44.088     1.915

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.866490 * X  +   0.429981 * Y  +   0.253597 * Z  +  40.274097
  Y_new =   0.493842 * X  +   0.812544 * Y  +   0.309666 * Z  + -21.106922
  Z_new =  -0.072908 * X  +   0.393559 * Y  +  -0.916404 * Z  +   1.031049 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.735950   -0.405643  [ DEG:   156.7584    -23.2416 ]
  Theta =   0.072973    3.068620  [ DEG:     4.1810    175.8190 ]
  Phi   =   2.623574   -0.518019  [ DEG:   150.3197    -29.6803 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0300TS599_5                                  
REMARK     2: T0300                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0300TS599_5.T0300 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  102   89   5.0   52   2.62   26.92  44.088
REMARK  ---------------------------------------------------------- 
MOLECULE T0300TS599_5
PFRMAT TS                                                                       
TARGET T0300                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      50.849 -38.146   9.266  1.00  0.00              
ATOM      2  CA  ALA     2      47.607 -37.106   7.616  1.00  0.00              
ATOM      3  CA  SER     3      44.170 -35.655   5.666  1.00  0.00              
ATOM      4  CA  LYS     4      43.027 -36.414   9.251  1.00  0.00              
ATOM      5  CA  LYS     5      43.667 -40.104   9.433  1.00  0.00              
ATOM      6  CA  PRO     6      46.180 -41.189  11.997  1.00  0.00              
ATOM      7  CA  ASP     7      48.949 -43.120  10.400  1.00  0.00              
ATOM      8  CA  LYS     8      50.964 -41.895   7.474  1.00  0.00              
ATOM      9  CA  THR     9      54.753 -42.444   7.233  1.00  0.00              
ATOM     10  CA  TYR    10      56.922 -39.472   6.249  1.00  0.00              
ATOM     11  CA  GLU    11      57.899 -41.149   3.045  1.00  0.00              
ATOM     12  CA  GLU    12      54.296 -41.942   2.130  1.00  0.00              
ATOM     13  CA  MET    13      53.260 -38.345   2.812  1.00  0.00              
ATOM     14  CA  VAL    14      56.096 -37.020   0.680  1.00  0.00              
ATOM     15  CA  LYS    15      55.014 -39.380  -2.116  1.00  0.00              
ATOM     16  CA  GLU    16      51.425 -38.201  -1.792  1.00  0.00              
ATOM     17  CA  VAL    17      52.546 -34.563  -1.968  1.00  0.00              
ATOM     18  CA  GLU    18      54.642 -35.292  -5.093  1.00  0.00              
ATOM     19  CA  ARG    19      51.651 -36.975  -6.755  1.00  0.00              
ATOM     20  CA  LEU    20      49.397 -33.984  -5.925  1.00  0.00              
ATOM     21  CA  LYS    21      52.036 -31.593  -7.356  1.00  0.00              
ATOM     22  CA  LEU    22      52.260 -33.570 -10.652  1.00  0.00              
ATOM     23  CA  GLU    23      48.421 -33.648 -10.913  1.00  0.00              
ATOM     24  CA  ASN    24      48.167 -29.877 -10.284  1.00  0.00              
ATOM     25  CA  LYS    25      50.804 -29.282 -12.972  1.00  0.00              
ATOM     26  CA  THR    26      48.873 -31.485 -15.402  1.00  0.00              
ATOM     27  CA  LEU    27      45.566 -29.659 -14.700  1.00  0.00              
ATOM     28  CA  LYS    28      47.282 -26.336 -15.168  1.00  0.00              
ATOM     29  CA  GLN    29      48.581 -27.535 -18.568  1.00  0.00              
ATOM     30  CA  LYS    30      45.131 -28.740 -19.547  1.00  0.00              
ATOM     31  CA  VAL    31      43.497 -25.421 -18.585  1.00  0.00              
ATOM     32  CA  LYS    32      46.031 -23.428 -20.507  1.00  0.00              
ATOM     33  CA  SER    33      45.563 -25.483 -23.628  1.00  0.00              
ATOM     34  CA  SER    34      41.776 -25.514 -23.757  1.00  0.00              
ATOM     35  CA  GLY    35      40.750 -22.006 -22.706  1.00  0.00              
ATOM     36  CA  ALA    36      37.820 -22.766 -20.463  1.00  0.00              
ATOM     37  CA  VAL    37      34.994 -20.541 -21.435  1.00  0.00              
ATOM     38  CA  SER    38      34.404 -16.931 -21.222  1.00  0.00              
ATOM     39  CA  SER    39      34.318 -15.019 -17.982  1.00  0.00              
ATOM     40  CA  ASP    40      36.644 -12.003 -18.499  1.00  0.00              
ATOM     41  CA  ASP    41      38.711 -13.299 -21.448  1.00  0.00              
ATOM     42  CA  SER    42      42.249 -13.063 -20.173  1.00  0.00              
ATOM     43  CA  ILE    43      43.900 -16.517 -19.791  1.00  0.00              
ATOM     44  CA  LEU    44      45.337 -15.912 -16.397  1.00  0.00              
ATOM     45  CA  THR    45      49.021 -16.418 -15.727  1.00  0.00              
ATOM     46  CA  ALA    46      49.461 -18.249 -12.385  1.00  0.00              
ATOM     47  CA  ALA    47      50.516 -15.124 -10.530  1.00  0.00              
ATOM     48  CA  LYS    48      47.730 -12.966 -11.918  1.00  0.00              
ATOM     49  CA  ARG    49      45.094 -15.508 -11.058  1.00  0.00              
ATOM     50  CA  GLU    50      46.409 -15.838  -7.469  1.00  0.00              
ATOM     51  CA  SER    51      46.538 -12.060  -6.890  1.00  0.00              
ATOM     52  CA  ILE    52      43.029 -11.602  -8.226  1.00  0.00              
ATOM     53  CA  ILE    53      41.707 -14.407  -6.002  1.00  0.00              
ATOM     54  CA  VAL    54      43.320 -13.082  -2.890  1.00  0.00              
ATOM     55  CA  SER    55      41.850  -9.693  -3.654  1.00  0.00              
ATOM     56  CA  SER    56      38.343 -10.997  -4.211  1.00  0.00              
ATOM     57  CA  SER    57      38.372 -13.141  -1.055  1.00  0.00              
ATOM     58  CA  ARG    58      39.674 -10.243   1.028  1.00  0.00              
ATOM     59  CA  ALA    59      36.790  -8.132  -0.085  1.00  0.00              
ATOM     60  CA  LEU    60      34.187 -10.800   0.395  1.00  0.00              
ATOM     61  CA  GLY    61      35.823 -11.940   3.641  1.00  0.00              
ATOM     62  CA  ALA    62      35.560  -8.546   5.209  1.00  0.00              
ATOM     63  CA  VAL    63      31.859  -8.315   4.630  1.00  0.00              
ATOM     64  CA  ALA    64      31.174 -11.973   5.581  1.00  0.00              
ATOM     65  CA  MET    65      33.372 -11.945   8.609  1.00  0.00              
ATOM     66  CA  ARG    66      31.739  -8.897  10.131  1.00  0.00              
ATOM     67  CA  LYS    67      28.256 -10.365   9.645  1.00  0.00              
ATOM     68  CA  ILE    68      29.250 -13.752  11.126  1.00  0.00              
ATOM     69  CA  GLU    69      30.812 -12.241  14.176  1.00  0.00              
ATOM     70  CA  ALA    70      27.881 -10.059  14.980  1.00  0.00              
ATOM     71  CA  LYS    71      25.326 -12.771  14.716  1.00  0.00              
ATOM     72  CA  VAL    72      27.259 -15.274  16.738  1.00  0.00              
ATOM     73  CA  ARG    73      27.933 -12.847  19.525  1.00  0.00              
ATOM     74  CA  SER    74      24.364 -11.835  19.979  1.00  0.00              
ATOM     75  CA  ARG    75      23.024 -15.333  20.154  1.00  0.00              
ATOM     76  CA  ALA    76      25.686 -16.442  22.546  1.00  0.00              
ATOM     77  CA  ALA    77      25.231 -13.508  24.976  1.00  0.00              
ATOM     78  CA  LYS    78      21.652 -14.583  25.391  1.00  0.00              
ATOM     79  CA  ALA    79      22.949 -18.087  26.328  1.00  0.00              
ATOM     80  CA  VAL    80      25.593 -17.208  28.690  1.00  0.00              
ATOM     81  CA  THR    81      27.966 -14.993  30.231  1.00  0.00              
ATOM     82  CA  GLU    82      30.305 -12.350  28.984  1.00  0.00              
ATOM     83  CA  GLN    83      33.433 -14.424  29.582  1.00  0.00              
ATOM     84  CA  GLU    84      32.113 -17.264  27.510  1.00  0.00              
ATOM     85  CA  LEU    85      31.267 -14.802  24.694  1.00  0.00              
ATOM     86  CA  THR    86      34.707 -13.285  24.661  1.00  0.00              
ATOM     87  CA  SER    87      36.079 -16.802  24.079  1.00  0.00              
ATOM     88  CA  LEU    88      33.643 -17.377  21.233  1.00  0.00              
ATOM     89  CA  LEU    89      34.558 -14.076  19.589  1.00  0.00              
ATOM     90  CA  GLN    90      38.202 -15.109  19.575  1.00  0.00              
ATOM     91  CA  SER    91      37.170 -18.240  17.626  1.00  0.00              
ATOM     92  CA  LEU    92      35.412 -16.469  14.697  1.00  0.00              
ATOM     93  CA  THR    93      35.878 -18.028  11.327  1.00  0.00              
ATOM     94  CA  LEU    94      36.168 -16.096   8.228  1.00  0.00              
ATOM     95  CA  ARG    95      35.776 -17.654   4.846  1.00  0.00              
ATOM     96  CA  VAL    96      37.027 -15.997   1.716  1.00  0.00              
ATOM     97  CA  ASP    97      35.578 -16.832  -1.714  1.00  0.00              
ATOM     98  CA  VAL    98      37.590 -15.417  -4.666  1.00  0.00              
ATOM     99  CA  SER    99      35.907 -15.339  -8.059  1.00  0.00              
ATOM    100  CA  MET   100      37.743 -14.776 -11.101  1.00  0.00              
ATOM    101  CA  GLU   101      39.587 -15.856 -13.986  1.00  0.00              
ATOM    102  CA  GLU   102      38.641 -15.512 -17.431  1.00  0.00              
TER                                                                             
END
