
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  102 (  102),  selected  102 , name T0300TS168_5
# Molecule2: number of CA atoms   89 (  695),  selected   89 , name T0300
# PARAMETERS: T0300TS168_5.T0300  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      D       7           -
LGA    A       2      K       8           -
LGA    S       3      T       9           -
LGA    K       4      Y      10           -
LGA    K       5      E      11           -
LGA    P       6      E      12           -
LGA    -       -      M      13           -
LGA    -       -      V      14           -
LGA    -       -      K      15           -
LGA    -       -      E      16           -
LGA    -       -      V      17           -
LGA    -       -      E      18           -
LGA    -       -      R      19           -
LGA    -       -      L      20           -
LGA    -       -      K      21           -
LGA    -       -      L      22           -
LGA    -       -      E      23           -
LGA    -       -      N      24           -
LGA    -       -      K      25           -
LGA    -       -      T      26           -
LGA    -       -      L      27           -
LGA    -       -      K      28           -
LGA    -       -      Q      29           -
LGA    -       -      K      30           -
LGA    -       -      V      31           -
LGA    -       -      S      39           -
LGA    -       -      D      40           -
LGA    -       -      D      41           -
LGA    -       -      S      42           -
LGA    -       -      I      43           -
LGA    D       7      L      44           #
LGA    K       8      T      45          1.988
LGA    T       9      A      46          2.165
LGA    Y      10      A      47          2.912
LGA    E      11      K      48          1.312
LGA    E      12      R      49          2.069
LGA    M      13      E      50          2.687
LGA    V      14      S      51          2.155
LGA    K      15      I      52          1.368
LGA    E      16      I      53          2.117
LGA    V      17      V      54          2.278
LGA    E      18      S      55          1.544
LGA    R      19      S      56          1.351
LGA    L      20      S      57          1.455
LGA    K      21      R      58          1.586
LGA    L      22      A      59          1.774
LGA    E      23      L      60          1.533
LGA    N      24      G      61          1.665
LGA    K      25      A      62          1.902
LGA    T      26      V      63          2.153
LGA    L      27      A      64          2.061
LGA    K      28      M      65          1.607
LGA    Q      29      R      66          1.893
LGA    K      30      K      67          2.752
LGA    V      31      I      68          2.878
LGA    K      32      E      69          2.565
LGA    S      33      A      70          5.336
LGA    -       -      K      71           -
LGA    -       -      V      72           -
LGA    S      34      R      73          5.622
LGA    G      35      S      74           #
LGA    A      36      -       -           -
LGA    V      37      -       -           -
LGA    S      38      R      75           #
LGA    S      39      A      76           #
LGA    D      40      A      77          3.383
LGA    D      41      K      78          1.793
LGA    S      42      A      79          4.664
LGA    -       -      V      80           -
LGA    -       -      T      81           -
LGA    -       -      E      82           -
LGA    -       -      Q      83           -
LGA    -       -      E      84           -
LGA    -       -      L      85           -
LGA    -       -      T      86           -
LGA    I      43      S      87           #
LGA    L      44      L      88          5.218
LGA    T      45      L      89          1.978
LGA    A      46      Q      90          1.465
LGA    A      47      S      91           #
LGA    K      48      -       -           -
LGA    R      49      L      92          1.938
LGA    E      50      -       -           -
LGA    S      51      T      93          4.286
LGA    I      52      L      94          1.930
LGA    I      53      -       -           -
LGA    V      54      -       -           -
LGA    S      55      R      95          3.956
LGA    S      56      V      96          1.279
LGA    S      57      -       -           -
LGA    R      58      -       -           -
LGA    A      59      D      97          2.843
LGA    L      60      V      98          1.000
LGA    G      61      -       -           -
LGA    A      62      -       -           -
LGA    V      63      S      99          2.028
LGA    A      64      M     100          1.864
LGA    M      65      -       -           -
LGA    R      66      -       -           -
LGA    K      67      E     101          4.047
LGA    I      68      E     102           -
LGA    E      69      -       -           -
LGA    A      70      -       -           -
LGA    K      71      -       -           -
LGA    V      72      -       -           -
LGA    R      73      -       -           -
LGA    S      74      -       -           -
LGA    R      75      -       -           -
LGA    A      76      -       -           -
LGA    A      77      -       -           -
LGA    K      78      -       -           -
LGA    A      79      -       -           -
LGA    V      80      -       -           -
LGA    T      81      -       -           -
LGA    E      82      -       -           -
LGA    Q      83      -       -           -
LGA    E      84      -       -           -
LGA    L      85      -       -           -
LGA    T      86      -       -           -
LGA    S      87      -       -           -
LGA    L      88      -       -           -
LGA    L      89      -       -           -
LGA    Q      90      -       -           -
LGA    S      91      -       -           -
LGA    L      92      -       -           -
LGA    T      93      -       -           -
LGA    L      94      -       -           -
LGA    R      95      -       -           -
LGA    V      96      -       -           -
LGA    D      97      -       -           -
LGA    V      98      -       -           -
LGA    S      99      -       -           -
LGA    M     100      -       -           -
LGA    E     101      -       -           -
LGA    E     102      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  102   89    5.0     43    2.69     6.98     36.087     1.542

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.856651 * X  +  -0.506703 * Y  +   0.096961 * Z  +  35.563679
  Y_new =  -0.417747 * X  +  -0.791593 * Y  +  -0.445947 * Z  + -18.396328
  Z_new =   0.302716 * X  +   0.341515 * Y  +  -0.889792 * Z  +  -3.301294 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.775116   -0.366476  [ DEG:   159.0025    -20.9975 ]
  Theta =  -0.307541   -2.834051  [ DEG:   -17.6208   -162.3792 ]
  Phi   =  -0.453720    2.687873  [ DEG:   -25.9962    154.0038 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0300TS168_5                                  
REMARK     2: T0300                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0300TS168_5.T0300 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  102   89   5.0   43   2.69    6.98  36.087
REMARK  ---------------------------------------------------------- 
MOLECULE T0300TS168_5
PFRMAT TS
TARGET T0300
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      52.144 -31.516  -8.906  1.00 25.00           C
ATOM      2  CA  ALA     2      54.675 -31.429 -11.731  1.00 25.00           C
ATOM      3  CA  SER     3      56.184 -31.217 -15.209  1.00 25.00           C
ATOM      4  CA  LYS     4      54.258 -28.997 -17.658  1.00 25.00           C
ATOM      5  CA  LYS     5      55.297 -25.426 -17.259  1.00 25.00           C
ATOM      6  CA  PRO     6      56.858 -22.195 -16.157  1.00 25.00           C
ATOM      7  CA  ASP     7      57.606 -18.774 -17.599  1.00 25.00           C
ATOM      8  CA  LYS     8      55.388 -15.856 -18.608  1.00 25.00           C
ATOM      9  CA  THR     9      56.048 -13.339 -15.818  1.00 25.00           C
ATOM     10  CA  TYR    10      53.815 -14.141 -12.865  1.00 25.00           C
ATOM     11  CA  GLU    11      51.096 -11.625 -13.840  1.00 25.00           C
ATOM     12  CA  GLU    12      48.462 -14.403 -13.759  1.00 25.00           C
ATOM     13  CA  MET    13      49.678 -15.490 -10.295  1.00 25.00           C
ATOM     14  CA  VAL    14      49.475 -11.870  -9.061  1.00 25.00           C
ATOM     15  CA  LYS    15      45.912 -11.576 -10.436  1.00 25.00           C
ATOM     16  CA  GLU    16      44.937 -14.834  -8.673  1.00 25.00           C
ATOM     17  CA  VAL    17      46.421 -13.532  -5.392  1.00 25.00           C
ATOM     18  CA  GLU    18      44.465 -10.262  -5.775  1.00 25.00           C
ATOM     19  CA  ARG    19      41.243 -12.235  -6.405  1.00 25.00           C
ATOM     20  CA  LEU    20      41.902 -14.355  -3.285  1.00 25.00           C
ATOM     21  CA  LYS    21      42.479 -11.182  -1.221  1.00 25.00           C
ATOM     22  CA  LEU    22      39.203  -9.700  -2.540  1.00 25.00           C
ATOM     23  CA  GLU    23      37.348 -12.924  -1.627  1.00 25.00           C
ATOM     24  CA  ASN    24      38.851 -12.822   1.893  1.00 25.00           C
ATOM     25  CA  LYS    25      37.768  -9.169   2.277  1.00 25.00           C
ATOM     26  CA  THR    26      34.224 -10.075   1.141  1.00 25.00           C
ATOM     27  CA  LEU    27      34.122 -12.950   3.670  1.00 25.00           C
ATOM     28  CA  LYS    28      35.284 -10.580   6.446  1.00 25.00           C
ATOM     29  CA  GLN    29      32.566  -8.065   5.472  1.00 25.00           C
ATOM     30  CA  LYS    30      29.931 -10.844   5.552  1.00 25.00           C
ATOM     31  CA  VAL    31      31.148 -11.929   9.017  1.00 25.00           C
ATOM     32  CA  LYS    32      30.944  -8.310  10.252  1.00 25.00           C
ATOM     33  CA  SER    33      28.545  -6.188   8.199  1.00 25.00           C
ATOM     34  CA  SER    34      25.893  -7.451  10.561  1.00 25.00           C
ATOM     35  CA  GLY    35      22.675  -7.985  12.483  1.00 25.00           C
ATOM     36  CA  ALA    36      20.441 -11.008  12.845  1.00 25.00           C
ATOM     37  CA  VAL    37      19.956 -14.705  11.938  1.00 25.00           C
ATOM     38  CA  SER    38      19.329 -15.588  15.642  1.00 25.00           C
ATOM     39  CA  SER    39      20.507 -13.321  18.514  1.00 25.00           C
ATOM     40  CA  ASP    40      22.462 -12.337  21.660  1.00 25.00           C
ATOM     41  CA  ASP    41      24.104 -15.716  22.108  1.00 25.00           C
ATOM     42  CA  SER    42      27.469 -17.276  22.975  1.00 25.00           C
ATOM     43  CA  ILE    43      30.392 -16.555  20.610  1.00 25.00           C
ATOM     44  CA  LEU    44      32.145 -16.542  17.240  1.00 25.00           C
ATOM     45  CA  THR    45      35.794 -15.906  18.259  1.00 25.00           C
ATOM     46  CA  ALA    46      37.550 -18.927  19.797  1.00 25.00           C
ATOM     47  CA  ALA    47      40.050 -21.160  17.944  1.00 25.00           C
ATOM     48  CA  LYS    48      37.167 -23.196  16.457  1.00 25.00           C
ATOM     49  CA  ARG    49      35.441 -19.971  15.325  1.00 25.00           C
ATOM     50  CA  GLU    50      38.695 -18.770  13.703  1.00 25.00           C
ATOM     51  CA  SER    51      39.063 -22.127  11.897  1.00 25.00           C
ATOM     52  CA  ILE    52      35.453 -21.877  10.644  1.00 25.00           C
ATOM     53  CA  ILE    53      36.111 -18.321   9.383  1.00 25.00           C
ATOM     54  CA  VAL    54      39.264 -19.521   7.571  1.00 25.00           C
ATOM     55  CA  SER    55      37.284 -22.375   5.960  1.00 25.00           C
ATOM     56  CA  SER    56      34.589 -19.899   4.829  1.00 25.00           C
ATOM     57  CA  SER    57      37.278 -17.619   3.331  1.00 25.00           C
ATOM     58  CA  ARG    58      38.811 -20.601   1.481  1.00 25.00           C
ATOM     59  CA  ALA    59      35.362 -21.560   0.119  1.00 25.00           C
ATOM     60  CA  LEU    60      34.799 -17.959  -1.059  1.00 25.00           C
ATOM     61  CA  GLY    61      38.215 -17.966  -2.791  1.00 25.00           C
ATOM     62  CA  ALA    62      37.363 -21.279  -4.513  1.00 25.00           C
ATOM     63  CA  VAL    63      34.015 -19.836  -5.685  1.00 25.00           C
ATOM     64  CA  ALA    64      35.801 -16.739  -7.057  1.00 25.00           C
ATOM     65  CA  MET    65      38.302 -18.972  -8.910  1.00 25.00           C
ATOM     66  CA  ARG    66      35.419 -21.008 -10.397  1.00 25.00           C
ATOM     67  CA  LYS    67      33.691 -17.783 -11.530  1.00 25.00           C
ATOM     68  CA  ILE    68      36.946 -16.582 -13.152  1.00 25.00           C
ATOM     69  CA  GLU    69      37.315 -19.939 -14.957  1.00 25.00           C
ATOM     70  CA  ALA    70      33.704 -19.689 -16.210  1.00 25.00           C
ATOM     71  CA  LYS    71      34.362 -16.133 -17.472  1.00 25.00           C
ATOM     72  CA  VAL    72      37.516 -17.333 -19.283  1.00 25.00           C
ATOM     73  CA  ARG    73      35.535 -20.186 -20.895  1.00 25.00           C
ATOM     74  CA  SER    74      32.841 -17.711 -22.026  1.00 25.00           C
ATOM     75  CA  ARG    75      35.529 -15.431 -23.523  1.00 25.00           C
ATOM     76  CA  ALA    76      37.061 -18.413 -25.374  1.00 25.00           C
ATOM     77  CA  ALA    77      38.515 -21.833 -24.575  1.00 25.00           C
ATOM     78  CA  LYS    78      40.237 -24.148 -22.168  1.00 25.00           C
ATOM     79  CA  ALA    79      40.175 -23.519 -18.391  1.00 25.00           C
ATOM     80  CA  VAL    80      37.169 -25.863 -18.026  1.00 25.00           C
ATOM     81  CA  THR    81      36.372 -29.529 -18.361  1.00 25.00           C
ATOM     82  CA  GLU    82      35.181 -29.712 -14.751  1.00 25.00           C
ATOM     83  CA  GLN    83      35.544 -32.911 -12.676  1.00 25.00           C
ATOM     84  CA  GLU    84      37.723 -31.047 -10.139  1.00 25.00           C
ATOM     85  CA  LEU    85      35.114 -28.253  -9.913  1.00 25.00           C
ATOM     86  CA  THR    86      32.352 -30.845  -9.349  1.00 25.00           C
ATOM     87  CA  SER    87      34.432 -32.496  -6.589  1.00 25.00           C
ATOM     88  CA  LEU    88      34.982 -29.089  -4.931  1.00 25.00           C
ATOM     89  CA  LEU    89      31.223 -28.378  -5.085  1.00 25.00           C
ATOM     90  CA  GLN    90      30.487 -31.790  -3.508  1.00 25.00           C
ATOM     91  CA  SER    91      27.785 -32.073  -6.172  1.00 25.00           C
ATOM     92  CA  LEU    92      24.909 -29.691  -5.765  1.00 25.00           C
ATOM     93  CA  THR    93      22.699 -27.663  -8.173  1.00 25.00           C
ATOM     94  CA  LEU    94      21.172 -24.163  -7.881  1.00 25.00           C
ATOM     95  CA  ARG    95      17.384 -23.494  -7.755  1.00 25.00           C
ATOM     96  CA  VAL    96      18.001 -19.837  -7.046  1.00 25.00           C
ATOM     97  CA  ASP    97      15.378 -17.053  -7.566  1.00 25.00           C
ATOM     98  CA  VAL    98      15.652 -13.532  -6.068  1.00 25.00           C
ATOM     99  CA  SER    99      15.502  -9.992  -4.848  1.00 25.00           C
ATOM    100  CA  MET   100      14.817  -6.418  -6.093  1.00 25.00           C
ATOM    101  CA  GLU   101      16.017  -4.747  -9.292  1.00 25.00           C
ATOM    102  CA  GLU   102      18.848  -6.796 -10.628  1.00 25.00           C
TER
END
