
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS599_2
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS599_2.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51        25 - 75          4.94    18.68
  LCS_AVERAGE:     28.12

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        86 - 104         1.98    22.64
  LONGEST_CONTINUOUS_SEGMENT:    19        87 - 105         1.97    22.19
  LONGEST_CONTINUOUS_SEGMENT:    19        88 - 106         1.95    21.91
  LCS_AVERAGE:      8.88

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        87 - 100         0.84    24.58
  LCS_AVERAGE:      5.38

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      3    3   10     3    3    3    3    3   10   11   16   23   26   29   34   38   42   47   47   50   54   58   65 
LCS_GDT     M       4     M       4      3    3   11     3    3    3    4    8   14   15   20   23   28   35   38   41   44   47   51   53   55   58   65 
LCS_GDT     N       5     N       5      3    3   11     3    3    3    3    4    7    7   16   22   26   33   36   38   44   49   53   54   56   60   66 
LCS_GDT     L       6     L       6      3    3   11     3    3    3    4    6    7   11   12   22   26   33   36   38   44   49   53   54   56   59   66 
LCS_GDT     K       7     K       7      3    3   11     3    3    3    3    6    7   12   21   31   32   35   36   44   48   51   53   57   60   64   67 
LCS_GDT     R       8     R       8      3    4   11     3    3    3    4   15   20   26   30   34   38   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     E       9     E       9      3    4   11     3    3    3    4    4    4   16   22   30   35   39   49   52   56   60   61   63   65   65   67 
LCS_GDT     Q      10     Q      10      3    4   11     3    3    4    4    4   20   26   30   34   37   45   49   52   56   59   61   63   65   65   67 
LCS_GDT     E      11     E      11      3    4   17     3    3    3    4   10   18   22   26   34   38   43   47   50   53   57   61   63   65   65   67 
LCS_GDT     F      12     F      12      3    3   17     3    3    3    6    8   19   24   27   33   38   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     V      13     V      13      4    4   17     3    3    4    6   15   19   24   29   34   38   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     S      14     S      14      4    4   17     3    3    4    6   11   15   24   27   34   38   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     Q      15     Q      15      5    7   21     3    4    5    6    7    9   10   12   15   21   29   34   39   45   48   52   55   58   62   65 
LCS_GDT     Y      16     Y      16      5    7   21     3    4    5    6    7    7    9   12   14   14   23   30   37   41   46   49   55   58   61   65 
LCS_GDT     H      17     H      17      5    7   21     3    4    5    6    7    7    9   12   12   17   25   32   38   41   46   50   55   58   61   65 
LCS_GDT     F      18     F      18      5    7   21     3    4    5    6    7    7    9   12   12   14   22   29   36   41   46   49   55   58   61   65 
LCS_GDT     D      19     D      19      5    7   21     3    4    5    5    7    7    9   12   13   21   27   34   38   45   48   51   55   58   62   65 
LCS_GDT     A      20     A      20      5    7   21     3    4    5    6    7    7    9   12   14   19   22   25   28   40   44   48   55   58   62   65 
LCS_GDT     R      21     R      21      5    7   21     3    4    5    6    7    7    9   12   12   14   19   26   36   41   47   51   55   58   62   65 
LCS_GDT     N      22     N      22      4    7   21     3    4    4    5    7    7    9   12   12   14   17   23   28   40   44   49   55   58   62   65 
LCS_GDT     F      23     F      23      4    5   21     3    4    4    4    5    6    6    8   11   13   17   26   27   29   30   37   40   45   51   58 
LCS_GDT     E      24     E      24      4    5   50     3    4    4    4    5    7    8   11   12   21   25   26   27   34   36   42   55   56   62   65 
LCS_GDT     W      25     W      25      3    4   51     3    3    3    4    4    7    9   12   12   19   25   39   42   47   53   60   63   65   65   67 
LCS_GDT     E      26     E      26      3    4   51     3    3    3    4    9   15   21   29   33   39   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     N      27     N      27      3    5   51     3    3    4    4    4    7   12   17   27   34   42   47   52   56   60   61   63   65   65   67 
LCS_GDT     E      28     E      28      3    5   51     3    3    4    4    5   23   29   35   38   41   44   49   52   56   60   61   63   65   65   67 
LCS_GDT     N      29     N      29      4   10   51     3    3    5   11   14   18   20   26   34   38   41   45   48   51   60   61   63   65   65   67 
LCS_GDT     G      30     G      30      4   10   51     3    3    9   14   17   23   29   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     A      31     A      31      6   10   51     3    5    9   14   17   23   29   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     P      32     P      32      6   10   51     3    5    8   13   14   20   29   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     E      33     E      33      6   13   51     3    5   10   16   18   23   29   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     T      34     T      34      6   13   51     4    9   12   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     K      35     K      35      6   13   51     4    9   12   17   20   26   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     V      36     V      36      7   13   51     3    6   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     D      37     D      37      8   13   51     5    9   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     V      38     V      38      8   13   51     3    6    8   15   21   26   31   35   37   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     N      39     N      39      8   13   51     5    9   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     F      40     F      40      8   13   51     3    6   12   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     Q      41     Q      41      8   13   51     4    9   12   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     L      42     L      42      8   13   51     4    7   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     L      43     L      43      8   13   51     4    9   12   16   20   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     Q      44     Q      44      8   13   51     5    9   12   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     H      45     H      45      3   13   51     3    4    8   16   18   24   30   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     D      46     D      46      5    8   51     4    7   10   16   20   26   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     Q      47     Q      47      5    5   51     4    5    5    5    5   16   21   30   36   40   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     E      48     E      48      5    5   51     4    5    5    5    5    5    6    7    7    7   13   16   19   23   38   39   47   65   65   67 
LCS_GDT     N      49     N      49      5    6   51     4    5    5    5    7    8   12   22   27   29   34   37   38   43   47   61   63   65   65   66 
LCS_GDT     Q      50     Q      50      5   16   51     4    6   10   17   22   26   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     V      51     V      51      4   16   51     3    5    9   17   22   27   31   35   38   41   44   49   52   56   60   61   63   65   65   67 
LCS_GDT     T      52     T      52      4   16   51     3    9   12   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     S      53     S      53      9   16   51     3    6   10   15   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     L      54     L      54      9   16   51     3    7   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     I      55     I      55      9   16   51     4    7   10   13   18   23   30   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     V      56     V      56      9   16   51     5    9   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     I      57     I      57      9   16   51     4    7   10   16   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     L      58     L      58      9   16   51     4    9   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     S      59     S      59      9   16   51     4    7   10   16   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     F      60     F      60      9   16   51     5    9   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     M      61     M      61      9   16   51     3    7   10   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     I      62     I      62      9   16   51     4    7   12   17   22   27   31   35   37   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     V      63     V      63      7   16   51     5    9   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     F      64     F      64      7   16   51     3    6   10   16   21   25   30   35   37   39   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     D      65     D      65      7   16   51     4    7   10   17   21   25   30   35   37   39   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     K      66     K      66      6   15   51     4    7   10   15   20   23   28   31   35   39   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     F      67     F      67      6   15   51     4    7   10   15   20   23   26   31   35   38   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     V      68     V      68      6   15   51     4    9   12   17   22   27   30   35   37   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     I      69     I      69      6   15   51     4    7   12   16   20   25   30   34   37   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     S      70     S      70      6   15   51     4    9   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     G      71     G      71      6   15   51     5    9   13   17   22   27   31   35   38   41   44   49   52   56   60   61   63   65   65   67 
LCS_GDT     T      72     T      72      4   15   51     3    5    6   15   21   25   31   35   38   41   43   46   50   56   60   61   63   65   65   67 
LCS_GDT     I      73     I      73      4   15   51     4    9   13   17   22   27   31   35   38   41   45   49   52   56   60   61   63   65   65   67 
LCS_GDT     S      74     S      74      3    9   51     0    3    5    5    7   11   20   24   28   36   41   46   50   56   60   61   63   65   65   67 
LCS_GDT     Q      75     Q      75      3    3   51     3    3    3    4    5    9   17   20   23   27   28   30   31   33   34   42   50   59   63   67 
LCS_GDT     V      76     V      76      3    3   47     3    3    7   13   16   16   17   19   21   22   24   27   29   30   32   35   42   51   53   58 
LCS_GDT     N      77     N      77      3    3   29     3    3    4    6    9   14   17   19   20   22   23   25   29   36   38   44   49   56   59   67 
LCS_GDT     H      78     H      78      3    3   29     3    3    4    5    8   14   17   19   20   22   23   25   29   30   32   34   34   39   41   44 
LCS_GDT     I      79     I      79      4    5   29     3    4    4    5   10   14   17   19   20   22   22   24   27   28   30   33   35   39   41   44 
LCS_GDT     D      80     D      80      4    5   29     3    4    4    5    5   10   12   14   17   19   21   22   24   27   30   32   33   38   39   43 
LCS_GDT     G      81     G      81      4    5   29     3    4    4    5    5    5    5    8    8   12   15   18   20   20   23   26   26   33   38   41 
LCS_GDT     R      82     R      82      4    5   29     3    4    4    8   10   14   16   19   20   21   22   23   26   28   30   32   34   38   41   44 
LCS_GDT     I      83     I      83      8   12   30     3    6    7    9   10   12   13   15   17   19   21   23   26   28   30   32   34   39   41   44 
LCS_GDT     V      84     V      84      8   12   31     4    6    7    9   10   12   14   16   18   22   22   26   31   33   34   36   37   39   41   44 
LCS_GDT     N      85     N      85      8   17   31     3    6    7    9   10   12   15   17   18   22   22   26   31   33   34   36   37   39   41   44 
LCS_GDT     E      86     E      86      8   19   31     4    6    8   13   16   19   20   25   27   27   28   30   31   33   34   36   37   39   41   44 
LCS_GDT     P      87     P      87     14   19   31     4    6    8   14   17   19   24   25   27   27   28   30   31   33   34   36   37   39   41   44 
LCS_GDT     S      88     S      88     14   19   31     4   13   13   14   16   21   24   25   27   27   28   30   31   33   34   36   37   39   41   44 
LCS_GDT     E      89     E      89     14   19   31     4   13   13   14   16   21   24   25   27   27   28   30   31   33   34   36   37   39   41   44 
LCS_GDT     L      90     L      90     14   19   31    10   13   13   14   16   21   24   25   27   27   28   30   31   33   34   36   37   46   47   49 
LCS_GDT     N      91     N      91     14   19   31    10   13   13   14   16   21   24   25   27   27   28   30   30   33   34   36   37   39   43   45 
LCS_GDT     Q      92     Q      92     14   19   31    10   13   13   14   16   21   24   25   27   27   28   30   30   33   34   36   37   40   43   46 
LCS_GDT     E      93     E      93     14   19   31    10   13   13   14   16   21   24   25   27   27   28   30   31   33   34   37   43   48   51   65 
LCS_GDT     E      94     E      94     14   19   31    10   13   13   14   16   21   24   25   27   27   28   30   31   33   36   44   47   50   55   62 
LCS_GDT     V      95     V      95     14   19   31    10   13   13   14   17   21   24   25   27   27   28   30   31   33   35   44   47   48   55   62 
LCS_GDT     E      96     E      96     14   19   31    10   13   13   14   17   21   24   25   27   27   28   30   31   33   35   41   47   54   57   65 
LCS_GDT     T      97     T      97     14   19   31    10   13   13   14   17   21   24   25   27   27   28   30   31   33   39   44   48   55   59   62 
LCS_GDT     L      98     L      98     14   19   31    10   13   13   14   17   19   24   25   27   27   28   30   31   33   37   44   48   54   57   62 
LCS_GDT     A      99     A      99     14   19   31    10   13   13   14   17   19   22   25   27   27   28   30   31   34   39   49   56   58   62   64 
LCS_GDT     R     100     R     100     14   19   31    10   13   13   14   17   21   24   25   27   27   28   33   36   45   51   55   58   62   65   67 
LCS_GDT     P     101     P     101     13   19   31    10   12   12   14   17   21   24   25   27   27   28   32   33   40   45   47   51   59   65   67 
LCS_GDT     C     102     C     102     13   19   31    10   12   12   14   17   21   24   25   27   27   28   32   33   40   45   48   59   62   65   67 
LCS_GDT     L     103     L     103     13   19   31    10   12   12   14   17   21   24   25   27   27   33   42   50   56   60   61   63   65   65   67 
LCS_GDT     N     104     N     104     13   19   31    10   12   12   14   17   21   24   25   27   27   41   44   50   56   60   61   63   65   65   67 
LCS_GDT     M     105     M     105     13   19   31    10   12   12   14   17   21   24   25   27   27   41   44   50   53   60   61   63   65   65   67 
LCS_GDT     L     106     L     106     13   19   31    10   12   12   14   17   21   24   32   38   41   43   47   52   56   60   61   63   65   65   67 
LCS_GDT     N     107     N     107     13   18   31    10   12   12   14   18   23   28   35   38   41   43   47   52   56   60   61   63   65   65   67 
LCS_GDT     R     108     R     108     13   18   31    10   12   12   14   20   26   30   34   38   41   43   46   50   56   60   61   63   65   65   67 
LCS_GDT     L     109     L     109     13   18   31     9   12   13   17   22   27   31   35   38   41   43   46   50   56   60   61   63   65   65   67 
LCS_GDT     T     110     T     110     13   18   31     9   12   12   17   22   27   31   35   38   41   43   46   50   56   60   61   63   65   65   67 
LCS_GDT     Y     111     Y     111      3   14   31     3    3    3    4    6    7   11   19   24   24   30   39   48   52   53   58   62   65   65   66 
LCS_GDT     E     112     E     112      3    4   31     3    3    3    4    5   10   14   17   19   21   23   26   28   30   37   41   46   52   54   62 
LCS_GDT     V     113     V     113      3    4   31     3    3    3    4    5    7    7    8    9   17   20   22   23   25   28   32   38   41   48   54 
LCS_GDT     T     114     T     114      3    4   31     3    3    3    4    5    7   12   14   17   20   21   22   26   28   30   32   34   35   38   40 
LCS_GDT     E     115     E     115      3    4   30     3    3    3    4    5    7    8    9   10   12   17   18   19   21   23   26   28   31   33   38 
LCS_GDT     I     116     I     116      3    4   13     3    3    3    4    4    7    7    7    9   10   13   15   17   19   22   26   27   30   33   38 
LCS_GDT     A     117     A     117      3    6   13     3    3    4    4    6    7    9    9   10   11   12   13   14   16   19   22   22   24   29   32 
LCS_GDT     L     118     L     118      3    6   13     3    3    4    4    4    6    9    9   10   11   12   13   14   17   19   24   26   29   32   37 
LCS_GDT     D     119     D     119      3    6   13     3    3    4    4    5    6    9    9   10   11   12   13   14   16   19   22   22   24   27   30 
LCS_GDT     L     120     L     120      3    6   13     3    3    4    4    5    6    9    9   10   11   12   13   16   16   19   22   30   31   33   36 
LCS_GDT     P     121     P     121      3    6   13     3    3    4    4    5    7    9    9   13   15   20   22   22   28   30   32   33   34   35   38 
LCS_GDT     G     122     G     122      4    6   13     4    4    5    6    6    7    9   11   14   16   21   22   25   28   30   32   33   34   37   38 
LCS_GDT     I     123     I     123      4    6   13     4    4    5    6    6    9   10   12   15   16   21   22   25   28   30   32   33   34   37   38 
LCS_GDT     N     124     N     124      4    6   13     4    4    4    6    6    7    7    8   10   13   14   18   23   25   30   31   33   34   35   38 
LCS_GDT     L     125     L     125      4    6   13     4    4    5    6    6    7    9    9   10   11   13   14   16   18   19   22   25   29   32   35 
LCS_GDT     E     126     E     126      3    6   13     0    3    5    6    6    7    9    9   10   11   12   13   14   14   17   20   21   23   25   25 
LCS_GDT     F     127     F     127      3    6   13     0    0    5    6    6    7    7    7    9   11   12   13   14   14   14   15   21   23   25   25 
LCS_AVERAGE  LCS_A:  14.13  (   5.38    8.88   28.12 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     13     17     22     27     31     35     38     41     45     49     52     56     60     61     63     65     65     67 
GDT PERCENT_CA   8.00  10.40  10.40  13.60  17.60  21.60  24.80  28.00  30.40  32.80  36.00  39.20  41.60  44.80  48.00  48.80  50.40  52.00  52.00  53.60
GDT RMS_LOCAL    0.25   0.49   0.49   1.40   1.73   2.00   2.22   2.55   2.93   3.18   3.83   4.07   4.29   4.51   4.82   4.89   5.09   5.27   5.26   5.59
GDT RMS_ALL_CA  24.15  24.10  24.10  19.30  20.05  19.97  19.92  20.08  19.14  19.11  18.32  18.40  18.44  18.72  18.63  18.59  18.62  18.68  18.61  18.39

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         33.354
LGA    M       4      M       4         26.188
LGA    N       5      N       5         23.452
LGA    L       6      L       6         22.858
LGA    K       7      K       7         20.042
LGA    R       8      R       8         14.323
LGA    E       9      E       9         13.011
LGA    Q      10      Q      10         16.240
LGA    E      11      E      11         15.363
LGA    F      12      F      12         11.335
LGA    V      13      V      13         11.770
LGA    S      14      S      14         12.645
LGA    Q      15      Q      15         16.358
LGA    Y      16      Y      16         17.461
LGA    H      17      H      17         18.091
LGA    F      18      F      18         17.526
LGA    D      19      D      19         15.618
LGA    A      20      A      20         15.134
LGA    R      21      R      21         12.526
LGA    N      22      N      22         13.856
LGA    F      23      F      23         16.267
LGA    E      24      E      24         15.996
LGA    W      25      W      25         13.751
LGA    E      26      E      26          9.278
LGA    N      27      N      27         12.846
LGA    E      28      E      28         13.184
LGA    N      29      N      29         14.470
LGA    G      30      G      30         13.401
LGA    A      31      A      31         11.196
LGA    P      32      P      32         11.071
LGA    E      33      E      33          8.259
LGA    T      34      T      34          3.221
LGA    K      35      K      35          5.091
LGA    V      36      V      36          0.472
LGA    D      37      D      37          2.529
LGA    V      38      V      38          1.962
LGA    N      39      N      39          2.179
LGA    F      40      F      40          1.310
LGA    Q      41      Q      41          3.580
LGA    L      42      L      42          2.142
LGA    L      43      L      43          3.673
LGA    Q      44      Q      44          1.249
LGA    H      45      H      45          3.722
LGA    D      46      D      46          3.397
LGA    Q      47      Q      47          5.541
LGA    E      48      E      48          9.319
LGA    N      49      N      49          7.603
LGA    Q      50      Q      50          1.682
LGA    V      51      V      51          1.425
LGA    T      52      T      52          3.638
LGA    S      53      S      53          2.190
LGA    L      54      L      54          2.752
LGA    I      55      I      55          3.687
LGA    V      56      V      56          1.651
LGA    I      57      I      57          2.880
LGA    L      58      L      58          1.695
LGA    S      59      S      59          3.373
LGA    F      60      F      60          1.066
LGA    M      61      M      61          3.325
LGA    I      62      I      62          1.547
LGA    V      63      V      63          1.534
LGA    F      64      F      64          3.767
LGA    D      65      D      65          3.545
LGA    K      66      K      66          7.164
LGA    F      67      F      67          7.514
LGA    V      68      V      68          3.250
LGA    I      69      I      69          5.109
LGA    S      70      S      70          0.674
LGA    G      71      G      71          0.389
LGA    T      72      T      72          3.268
LGA    I      73      I      73          2.374
LGA    S      74      S      74          8.323
LGA    Q      75      Q      75         13.773
LGA    V      76      V      76         14.500
LGA    N      77      N      77         16.902
LGA    H      78      H      78         23.831
LGA    I      79      I      79         28.159
LGA    D      80      D      80         28.430
LGA    G      81      G      81         32.874
LGA    R      82      R      82         35.986
LGA    I      83      I      83         36.126
LGA    V      84      V      84         33.527
LGA    N      85      N      85         35.341
LGA    E      86      E      86         32.671
LGA    P      87      P      87         29.841
LGA    S      88      S      88         35.716
LGA    E      89      E      89         40.346
LGA    L      90      L      90         37.590
LGA    N      91      N      91         40.941
LGA    Q      92      Q      92         37.956
LGA    E      93      E      93         37.391
LGA    E      94      E      94         35.178
LGA    V      95      V      95         30.163
LGA    E      96      E      96         28.235
LGA    T      97      T      97         28.176
LGA    L      98      L      98         24.857
LGA    A      99      A      99         19.739
LGA    R     100      R     100         19.581
LGA    P     101      P     101         17.708
LGA    C     102      C     102         14.463
LGA    L     103      L     103         13.859
LGA    N     104      N     104         13.358
LGA    M     105      M     105         10.679
LGA    L     106      L     106          8.127
LGA    N     107      N     107          8.470
LGA    R     108      R     108          6.862
LGA    L     109      L     109          3.309
LGA    T     110      T     110          2.717
LGA    Y     111      Y     111          8.691
LGA    E     112      E     112         11.930
LGA    V     113      V     113         15.492
LGA    T     114      T     114         20.273
LGA    E     115      E     115         25.291
LGA    I     116      I     116         29.542
LGA    A     117      A     117         33.486
LGA    L     118      L     118         38.727
LGA    D     119      D     119         42.680
LGA    L     120      L     120         44.524
LGA    P     121      P     121         40.724
LGA    G     122      G     122         33.972
LGA    I     123      I     123         33.272
LGA    N     124      N     124         29.798
LGA    L     125      L     125         30.581
LGA    E     126      E     126         31.441
LGA    F     127      F     127         31.988

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     35    2.55    25.200    21.558     1.322

LGA_LOCAL      RMSD =  2.547  Number of atoms =   35  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.331  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 16.968  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.865526 * X  +   0.173683 * Y  +   0.469786 * Z  +   8.442016
  Y_new =   0.397095 * X  +  -0.333686 * Y  +   0.854967 * Z  +  27.739546
  Z_new =   0.305254 * X  +   0.926546 * Y  +   0.219845 * Z  +  12.407233 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.337831   -1.803762  [ DEG:    76.6521   -103.3479 ]
  Theta =  -0.310205   -2.831388  [ DEG:   -17.7734   -162.2265 ]
  Phi   =   2.711453   -0.430140  [ DEG:   155.3548    -24.6452 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS599_2                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS599_2.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   35   2.55  21.558    16.97
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS599_2
PFRMAT TS                                                                       
TARGET T0383                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  SER     1       5.394  18.043  25.313  1.00  0.00              
ATOM      2  CA  ASN     2       7.881  16.193  23.344  1.00  0.00              
ATOM      3  CA  ALA     3       4.793  15.515  21.653  1.00  0.00              
ATOM      4  CA  MET     4       6.217  19.021  23.203  1.00  0.00              
ATOM      5  CA  ASN     5       7.622  19.912  19.791  1.00  0.00              
ATOM      6  CA  LEU     6       4.446  18.887  17.953  1.00  0.00              
ATOM      7  CA  LYS     7       2.304  20.904  20.341  1.00  0.00              
ATOM      8  CA  ARG     8       4.420  24.064  20.040  1.00  0.00              
ATOM      9  CA  GLU     9       4.087  24.034  16.219  1.00  0.00              
ATOM     10  CA  GLN    10       0.289  24.172  15.730  1.00  0.00              
ATOM     11  CA  GLU    11      -0.129  26.813  18.461  1.00  0.00              
ATOM     12  CA  PHE    12       2.400  29.210  16.888  1.00  0.00              
ATOM     13  CA  VAL    13       0.740  28.898  13.449  1.00  0.00              
ATOM     14  CA  SER    14      -2.756  29.560  14.866  1.00  0.00              
ATOM     15  CA  GLN    15      -1.589  32.629  16.869  1.00  0.00              
ATOM     16  CA  TYR    16      -0.025  34.386  13.922  1.00  0.00              
ATOM     17  CA  HIS    17      -2.511  33.435  11.154  1.00  0.00              
ATOM     18  CA  PHE    18      -0.995  32.638   7.830  1.00  0.00              
ATOM     19  CA  ASP    19      -2.178  30.416   5.064  1.00  0.00              
ATOM     20  CA  ALA    20       0.858  28.995   3.154  1.00  0.00              
ATOM     21  CA  ARG    21      -1.144  27.711   0.208  1.00  0.00              
ATOM     22  CA  ASN    22      -3.165  30.876  -0.618  1.00  0.00              
ATOM     23  CA  PHE    23      -1.207  34.061  -0.391  1.00  0.00              
ATOM     24  CA  GLU    24      -2.202  35.902  -3.510  1.00  0.00              
ATOM     25  CA  TRP    25       1.123  36.992  -5.161  1.00  0.00              
ATOM     26  CA  GLU    26      -0.231  38.264  -8.427  1.00  0.00              
ATOM     27  CA  ASN    27       2.708  39.963 -10.079  1.00  0.00              
ATOM     28  CA  GLU    28       2.030  39.116 -13.746  1.00  0.00              
ATOM     29  CA  ASN    29       5.495  37.765 -14.589  1.00  0.00              
ATOM     30  CA  GLY    30       7.282  40.711 -12.955  1.00  0.00              
ATOM     31  CA  ALA    31       9.625  38.671 -10.842  1.00  0.00              
ATOM     32  CA  PRO    32       9.893  39.940  -7.313  1.00  0.00              
ATOM     33  CA  GLU    33      10.582  37.056  -5.001  1.00  0.00              
ATOM     34  CA  THR    34       8.428  37.867  -2.042  1.00  0.00              
ATOM     35  CA  LYS    35       9.686  36.990   1.372  1.00  0.00              
ATOM     36  CA  VAL    36       7.165  36.990   4.139  1.00  0.00              
ATOM     37  CA  ASP    37       8.272  37.009   7.651  1.00  0.00              
ATOM     38  CA  VAL    38       5.844  36.144  10.393  1.00  0.00              
ATOM     39  CA  ASN    39       6.783  36.840  13.931  1.00  0.00              
ATOM     40  CA  PHE    40       5.095  35.003  16.767  1.00  0.00              
ATOM     41  CA  GLN    41       5.811  36.016  20.352  1.00  0.00              
ATOM     42  CA  LEU    42       5.268  33.618  23.107  1.00  0.00              
ATOM     43  CA  LEU    43       5.127  34.804  26.655  1.00  0.00              
ATOM     44  CA  GLN    44       3.708  32.413  29.237  1.00  0.00              
ATOM     45  CA  HIS    45       2.038  34.872  31.595  1.00  0.00              
ATOM     46  CA  ASP    46       4.515  34.601  34.492  1.00  0.00              
ATOM     47  CA  GLN    47       7.565  34.002  32.334  1.00  0.00              
ATOM     48  CA  GLU    48       6.671  36.991  30.103  1.00  0.00              
ATOM     49  CA  ASN    49       6.540  39.492  32.966  1.00  0.00              
ATOM     50  CA  GLN    50       9.942  38.255  34.197  1.00  0.00              
ATOM     51  CA  VAL    51      11.744  38.227  30.867  1.00  0.00              
ATOM     52  CA  THR    52      11.651  34.652  29.504  1.00  0.00              
ATOM     53  CA  SER    53      10.094  35.329  26.089  1.00  0.00              
ATOM     54  CA  LEU    54      10.027  32.895  23.338  1.00  0.00              
ATOM     55  CA  ILE    55      10.131  34.239  19.834  1.00  0.00              
ATOM     56  CA  VAL    56       9.041  32.161  17.005  1.00  0.00              
ATOM     57  CA  ILE    57       9.905  33.213  13.558  1.00  0.00              
ATOM     58  CA  LEU    58       7.846  31.939  10.695  1.00  0.00              
ATOM     59  CA  SER    59       9.256  32.282   7.230  1.00  0.00              
ATOM     60  CA  PHE    60       6.993  32.418   4.228  1.00  0.00              
ATOM     61  CA  MET    61       8.690  32.316   0.781  1.00  0.00              
ATOM     62  CA  ILE    62       6.788  33.541  -2.135  1.00  0.00              
ATOM     63  CA  VAL    63       7.874  32.445  -5.494  1.00  0.00              
ATOM     64  CA  PHE    64       6.534  34.369  -8.506  1.00  0.00              
ATOM     65  CA  ASP    65       6.133  32.609 -11.815  1.00  0.00              
ATOM     66  CA  LYS    66       2.452  31.670 -11.538  1.00  0.00              
ATOM     67  CA  PHE    67       2.169  31.890  -7.714  1.00  0.00              
ATOM     68  CA  VAL    68       3.979  29.366  -5.602  1.00  0.00              
ATOM     69  CA  ILE    69       3.948  29.629  -1.814  1.00  0.00              
ATOM     70  CA  SER    70       6.674  27.960   0.186  1.00  0.00              
ATOM     71  CA  GLY    71       6.326  27.657   3.933  1.00  0.00              
ATOM     72  CA  THR    72       9.233  27.149   6.002  1.00  0.00              
ATOM     73  CA  ILE    73       8.378  26.319   9.444  1.00  0.00              
ATOM     74  CA  SER    74       5.260  24.339   8.469  1.00  0.00              
ATOM     75  CA  GLN    75       7.220  22.033   6.095  1.00  0.00              
ATOM     76  CA  VAL    76       9.957  21.350   8.669  1.00  0.00              
ATOM     77  CA  ASN    77       7.408  20.663  11.385  1.00  0.00              
ATOM     78  CA  HIS    78       5.390  18.237   9.281  1.00  0.00              
ATOM     79  CA  ILE    79       8.456  16.210   8.453  1.00  0.00              
ATOM     80  CA  ASP    80       9.572  16.061  12.130  1.00  0.00              
ATOM     81  CA  GLY    81       6.247  14.893  13.481  1.00  0.00              
ATOM     82  CA  ARG    82       5.993  12.153  10.919  1.00  0.00              
ATOM     83  CA  ILE    83       9.550  10.762  11.325  1.00  0.00              
ATOM     84  CA  VAL    84       9.191  10.709  15.057  1.00  0.00              
ATOM     85  CA  ASN    85       5.822   9.057  15.378  1.00  0.00              
ATOM     86  CA  GLU    86       4.512  10.585  18.534  1.00  0.00              
ATOM     87  CA  PRO    87       6.935  11.924  21.070  1.00  0.00              
ATOM     88  CA  SER    88       6.229   9.417  23.786  1.00  0.00              
ATOM     89  CA  GLU    89       7.431   6.528  21.722  1.00  0.00              
ATOM     90  CA  LEU    90      10.747   7.831  20.589  1.00  0.00              
ATOM     91  CA  ASN    91      13.979   7.174  22.553  1.00  0.00              
ATOM     92  CA  GLN    92      16.051  10.259  23.401  1.00  0.00              
ATOM     93  CA  GLU    93      18.770   9.204  20.975  1.00  0.00              
ATOM     94  CA  GLU    94      16.268   8.636  18.197  1.00  0.00              
ATOM     95  CA  VAL    95      14.751  12.077  18.870  1.00  0.00              
ATOM     96  CA  GLU    96      18.106  13.741  18.525  1.00  0.00              
ATOM     97  CA  THR    97      18.602  11.872  15.223  1.00  0.00              
ATOM     98  CA  LEU    98      15.144  13.021  14.116  1.00  0.00              
ATOM     99  CA  ALA    99      15.693  16.730  14.979  1.00  0.00              
ATOM    100  CA  ARG   100      19.009  16.527  13.088  1.00  0.00              
ATOM    101  CA  PRO   101      17.931  14.741   9.880  1.00  0.00              
ATOM    102  CA  CYS   102      15.013  17.160   9.497  1.00  0.00              
ATOM    103  CA  LEU   103      17.206  20.212   9.941  1.00  0.00              
ATOM    104  CA  ASN   104      19.538  18.737   7.340  1.00  0.00              
ATOM    105  CA  MET   105      16.622  18.378   4.916  1.00  0.00              
ATOM    106  CA  LEU   106      15.507  21.967   5.564  1.00  0.00              
ATOM    107  CA  ASN   107      19.093  23.159   4.900  1.00  0.00              
ATOM    108  CA  ARG   108      18.775  21.515   1.463  1.00  0.00              
ATOM    109  CA  LEU   109      15.441  23.261   0.822  1.00  0.00              
ATOM    110  CA  THR   110      16.569  26.815   1.787  1.00  0.00              
ATOM    111  CA  TYR   111      14.746  27.164   5.065  1.00  0.00              
ATOM    112  CA  GLU   112      15.712  29.643   7.787  1.00  0.00              
ATOM    113  CA  VAL   113      15.440  28.492  11.435  1.00  0.00              
ATOM    114  CA  THR   114      14.571  31.707  13.120  1.00  0.00              
ATOM    115  CA  GLU   115      14.130  30.557  16.739  1.00  0.00              
ATOM    116  CA  ILE   116      14.449  33.241  19.368  1.00  0.00              
ATOM    117  CA  ALA   117      14.723  32.332  23.059  1.00  0.00              
ATOM    118  CA  LEU   118      14.397  34.984  25.667  1.00  0.00              
ATOM    119  CA  ASP   119      16.680  34.923  28.632  1.00  0.00              
ATOM    120  CA  LEU   120      16.620  38.064  30.754  1.00  0.00              
ATOM    121  CA  PRO   121      19.383  40.359  29.408  1.00  0.00              
ATOM    122  CA  GLY   122      18.333  39.707  25.776  1.00  0.00              
ATOM    123  CA  ILE   123      14.607  40.125  26.110  1.00  0.00              
ATOM    124  CA  ASN   124      12.584  42.801  24.458  1.00  0.00              
ATOM    125  CA  LEU   125       9.396  43.604  27.092  1.00  0.00              
ATOM    126  CA  GLU   126       8.891  47.422  28.780  1.00  0.00              
ATOM    127  CA  PHE   127       7.108  48.929  31.951  1.00  0.00              
TER                                                                             
END
