
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS599_1
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS599_1.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51        12 - 62          4.97    17.76
  LCS_AVERAGE:     30.59

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        54 - 74          1.94    20.03
  LCS_AVERAGE:      9.66

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13        60 - 72          0.99    20.06
  LONGEST_CONTINUOUS_SEGMENT:    13        98 - 110         0.84    23.46
  LCS_AVERAGE:      5.96

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      3    3   10     3    3    3    5    5    6    7   10   13   18   21   23   27   31   34   39   43   46   52   57 
LCS_GDT     M       4     M       4      3    3   10     3    4    4    5    5    6    7   10   13   18   21   23   27   31   34   39   43   46   52   57 
LCS_GDT     N       5     N       5      3    3   10     3    3    3    4    4    6    7   10   12   17   23   28   33   34   36   39   43   49   53   57 
LCS_GDT     L       6     L       6      3    3   11     4    4    4    4    4    6    6    9   11   12   27   28   33   34   36   39   43   49   52   57 
LCS_GDT     K       7     K       7      3    3   11     4    4    4    4    6    8    8    9   11   12   27   27   33   34   36   39   40   49   53   57 
LCS_GDT     R       8     R       8      3    4   11     4    4    4    5    6    8    8    9   20   23   27   28   33   38   47   51   56   61   63   67 
LCS_GDT     E       9     E       9      3    4   11     3    3    3    5    6    8   14   22   27   27   28   31   34   38   43   47   55   61   64   68 
LCS_GDT     Q      10     Q      10      3    4   19     3    3    3    4    4    4    8    9   13   17   22   27   31   38   44   50   56   61   64   68 
LCS_GDT     E      11     E      11      3    4   32     1    3    3    7    9   12   14   17   24   32   39   44   51   54   55   57   59   61   65   68 
LCS_GDT     F      12     F      12      3    3   51     3    4    4    4    5   13   27   35   39   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     V      13     V      13      3    4   51     3    4    4    7   11   13   20   35   42   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     S      14     S      14      3    4   51     3    4    4    5   11   13   16   21   39   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     Q      15     Q      15      5    8   51     3   11   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     Y      16     Y      16      6    8   51     3    6   13   22   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     H      17     H      17      6    8   51     4   11   18   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     F      18     F      18      6    8   51     4   11   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     D      19     D      19      6    8   51     7   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     A      20     A      20      6    8   51     3    4   19   24   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     R      21     R      21      6    8   51     3    9   18   24   29   33   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     N      22     N      22      4    8   51     3    4    9   21   26   30   33   38   41   42   48   52   55   57   59   59   60   63   65   68 
LCS_GDT     F      23     F      23      4    5   51     3    4    4    4    5    9   11   19   25   33   35   44   49   53   57   59   60   63   65   65 
LCS_GDT     E      24     E      24      4    6   51     4    5    5    5    6    9   10   13   19   25   32   37   40   47   52   57   59   63   63   65 
LCS_GDT     W      25     W      25      4    6   51     4    5    5    5    6    9   10   11   18   22   28   36   39   41   44   48   53   59   63   64 
LCS_GDT     E      26     E      26      4    6   51     4    5    5    9   10   15   16   21   25   33   34   44   49   53   57   58   60   63   65   66 
LCS_GDT     N      27     N      27      5    6   51     4    5    7    9   13   16   22   27   33   39   43   47   51   54   57   59   60   63   65   66 
LCS_GDT     E      28     E      28      5    8   51     3    5    6    9   13   16   22   24   28   36   43   47   50   53   57   58   60   63   65   66 
LCS_GDT     N      29     N      29      5    8   51     3    5    5    7   12   16   22   30   34   39   43   48   52   54   57   59   60   63   65   67 
LCS_GDT     G      30     G      30      5    9   51     3    5    5    8   11   16   25   30   36   40   44   49   52   54   57   59   60   63   65   67 
LCS_GDT     A      31     A      31      5    9   51     3    5    7   11   15   18   23   32   40   41   48   51   53   56   57   59   60   63   65   68 
LCS_GDT     P      32     P      32      5    9   51     3    4    6   12   17   22   29   32   40   41   48   51   52   56   57   59   60   63   65   68 
LCS_GDT     E      33     E      33      7   14   51     5   10   18   23   29   34   38   41   43   45   49   53   55   57   59   59   60   63   65   68 
LCS_GDT     T      34     T      34      7   14   51     5   12   18   25   30   34   38   41   43   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     K      35     K      35      9   14   51     7   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     V      36     V      36      9   14   51     5   14   19   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     D      37     D      37      9   14   51     5   11   19   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     V      38     V      38      9   14   51     4   11   19   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     N      39     N      39      9   14   51     3   11   19   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     F      40     F      40      9   14   51     5   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     Q      41     Q      41      9   14   51     5   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     L      42     L      42      9   14   51     7   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     L      43     L      43      9   14   51     7   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     Q      44     Q      44      6   14   51     5   10   18   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     H      45     H      45      6   14   51     3    5   11   20   29   32   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     D      46     D      46      5   14   51     5   10   18   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     Q      47     Q      47      5    5   51     4    5    5    5    5    6   23   34   42   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     E      48     E      48      5    5   51     4    5    5    5    5    6    7    7    8    9   12   18   44   47   54   56   60   63   65   65 
LCS_GDT     N      49     N      49      5    7   51     4    5    5    6    7   30   31   34   37   43   48   50   52   56   59   59   60   63   65   65 
LCS_GDT     Q      50     Q      50      5   16   51     4    9   18   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     V      51     V      51      4   16   51     3    9   18   24   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     T      52     T      52      7   19   51     3    4   17   24   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     S      53     S      53     10   19   51     7   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     L      54     L      54     10   21   51     4   13   20   24   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     I      55     I      55     10   21   51     4   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     V      56     V      56     10   21   51     6   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     I      57     I      57     10   21   51     7   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     L      58     L      58     10   21   51     7   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     S      59     S      59     12   21   51     6   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     F      60     F      60     13   21   51     5   13   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     M      61     M      61     13   21   51     7   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     I      62     I      62     13   21   51     7   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     V      63     V      63     13   21   49     7   11   18   24   29   34   38   41   46   47   51   53   55   57   59   59   60   62   65   68 
LCS_GDT     F      64     F      64     13   21   47     7   11   18   22   28   34   37   40   46   47   51   53   55   57   59   59   60   62   65   68 
LCS_GDT     D      65     D      65     13   21   47     7   11   15   21   27   32   35   40   46   47   51   51   54   57   59   59   60   62   65   68 
LCS_GDT     K      66     K      66     13   21   47     3    7   15   18   22   28   32   35   39   44   47   50   53   57   59   59   60   62   65   68 
LCS_GDT     F      67     F      67     13   21   47     5   11   18   22   29   34   36   40   46   47   51   53   55   57   59   59   60   62   65   68 
LCS_GDT     V      68     V      68     13   21   47     3   11   18   23   29   34   38   41   46   47   51   53   55   57   59   59   60   62   65   68 
LCS_GDT     I      69     I      69     13   21   47     7   11   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     S      70     S      70     13   21   47     7   14   20   25   30   34   38   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     G      71     G      71     13   21   47     4   11   18   24   29   32   36   40   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     T      72     T      72     13   21   47     4   11   18   24   29   32   37   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     I      73     I      73      5   21   47     4    8   17   24   29   32   37   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     S      74     S      74      5   21   47     4    8   15   24   29   32   37   41   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     Q      75     Q      75      3    3   47     3    3    4    5    9   19   26   35   42   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     V      76     V      76      3    3   47     3   13   13   13   15   17   19   22   27   27   28   30   34   38   41   47   55   59   65   68 
LCS_GDT     N      77     N      77      3    3   47     3    3    4    9   13   14   16   18   20   22   28   34   40   47   51   53   60   62   65   68 
LCS_GDT     H      78     H      78      3    3   47     3    3    4    9   12   13   16   18   20   22   25   29   34   38   44   52   55   61   65   68 
LCS_GDT     I      79     I      79      4    5   28     3    4    4    9   12   14   16   18   20   22   25   28   33   34   37   42   44   49   53   57 
LCS_GDT     D      80     D      80      4    5   28     3    4    4    5    5    6   10   14   15   19   21   23   24   25   27   29   32   40   42   50 
LCS_GDT     G      81     G      81      4    5   28     3    4    4    5    5    5    7    8   13   16   18   18   20   21   28   33   35   40   49   56 
LCS_GDT     R      82     R      82      4    5   29     3    4    4    5    5    9   10   14   17   19   21   23   24   31   35   39   43   49   52   57 
LCS_GDT     I      83     I      83      3    8   31     3    3    4    5    6    7    7    9   13   16   20   23   24   27   35   39   43   46   50   54 
LCS_GDT     V      84     V      84      6    8   31     3    5    6    7    7    8    9   11   14   21   25   28   31   35   38   41   43   49   52   57 
LCS_GDT     N      85     N      85      6    8   31     3    5    6    7    7    8    9   10   15   22   23   28   33   34   38   40   43   49   52   57 
LCS_GDT     E      86     E      86      6   15   31     4    5    6    9   15   17   21   24   27   27   28   31   34   35   36   39   40   43   48   52 
LCS_GDT     P      87     P      87      6   15   31     4    5    6   13   15   19   21   24   27   27   28   31   34   35   36   39   40   42   47   52 
LCS_GDT     S      88     S      88      6   17   31     4    5    6   10   15   17   23   23   25   26   28   31   34   35   36   36   40   42   43   46 
LCS_GDT     E      89     E      89     12   17   31     9   13   13   13   16   19   23   23   25   26   28   31   34   35   36   39   41   46   50   54 
LCS_GDT     L      90     L      90     12   17   31    10   13   13   13   16   19   23   24   27   27   28   31   34   35   38   40   43   49   52   57 
LCS_GDT     N      91     N      91     12   17   31    10   13   13   13   16   19   23   24   27   27   28   31   34   35   38   40   43   49   52   57 
LCS_GDT     Q      92     Q      92     12   17   31    10   13   13   13   16   19   23   24   27   27   28   31   34   35   36   42   46   49   54   60 
LCS_GDT     E      93     E      93     12   18   31    10   13   13   13   16   19   23   24   27   27   28   31   34   35   40   42   46   53   58   62 
LCS_GDT     E      94     E      94     12   18   31    10   13   13   13   16   19   23   24   27   27   28   31   34   38   40   42   46   49   53   58 
LCS_GDT     V      95     V      95     12   18   31    10   13   13   13   16   19   23   24   27   27   28   31   34   35   38   42   46   53   58   63 
LCS_GDT     E      96     E      96     12   18   31    10   13   13   13   16   19   23   24   27   27   28   31   34   35   39   42   50   56   61   66 
LCS_GDT     T      97     T      97     12   18   31    10   13   13   14   16   19   23   24   27   27   28   31   35   38   41   46   50   54   61   66 
LCS_GDT     L      98     L      98     13   18   31    10   13   13   14   16   19   23   24   27   27   28   31   35   38   41   44   50   56   61   66 
LCS_GDT     A      99     A      99     13   18   31    12   13   13   14   16   19   21   24   27   27   28   33   35   39   47   52   55   61   64   68 
LCS_GDT     R     100     R     100     13   18   31    12   13   13   14   18   20   23   26   28   31   33   42   45   49   51   55   60   62   65   68 
LCS_GDT     P     101     P     101     13   18   31    12   12   12   14   16   20   24   26   30   32   39   43   49   50   54   56   60   62   65   68 
LCS_GDT     C     102     C     102     13   18   31    12   12   15   17   19   22   25   28   35   42   43   48   54   57   59   59   60   63   65   68 
LCS_GDT     L     103     L     103     13   18   31    12   12   12   14   16   19   23   25   30   42   48   53   55   57   59   59   60   63   65   68 
LCS_GDT     N     104     N     104     13   18   31    12   12   15   19   22   25   32   35   42   46   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     M     105     M     105     13   18   31    12   12   12   16   23   28   33   40   46   47   51   53   55   57   59   59   60   63   65   68 
LCS_GDT     L     106     L     106     13   18   31    12   12   18   24   29   32   36   40   46   47   49   53   55   57   59   59   60   63   65   68 
LCS_GDT     N     107     N     107     13   18   31    12   12   17   24   29   32   36   40   46   47   49   51   55   57   59   59   60   63   65   65 
LCS_GDT     R     108     R     108     13   18   31    12   12   12   14   21   25   33   40   43   43   48   50   52   54   56   59   60   61   62   63 
LCS_GDT     L     109     L     109     13   18   31    12   12   12   14   16   19   23   24   27   35   38   45   47   48   54   55   57   60   62   63 
LCS_GDT     T     110     T     110     13   18   31    12   12   12   14   16   19   23   24   27   27   28   30   34   43   47   51   52   57   60   63 
LCS_GDT     Y     111     Y     111      3   15   31     3    3    3    4    5    7   12   18   25   26   28   31   34   35   36   36   40   43   46   48 
LCS_GDT     E     112     E     112      3    5   31     3    3    5   10   13   14   18   20   22   25   28   31   34   35   36   36   40   42   43   45 
LCS_GDT     V     113     V     113      4    5   31     3    4    4    4    6   13   17   19   22   24   28   31   34   35   36   36   39   41   43   45 
LCS_GDT     T     114     T     114      4    5   31     3    4    4    4   13   14   18   19   22   24   28   31   34   35   35   35   38   41   43   45 
LCS_GDT     E     115     E     115      4    5   31     3    4    4    4    6    8   10   13   16   20   21   24   25   27   30   32   34   36   37   40 
LCS_GDT     I     116     I     116      4    5   31     3    4    4    4    5    5    6    8   10   12   14   17   18   21   25   29   32   34   36   38 
LCS_GDT     A     117     A     117      4    6   17     3    3    4    5    5    8    8    9   10   12   14   15   17   20   24   29   32   34   36   38 
LCS_GDT     L     118     L     118      4    6   17     3    3    4    4    5    6    7    8   10   12   14   15   17   21   25   29   32   32   35   38 
LCS_GDT     D     119     D     119      4    6   11     3    3    4    5    5    6    7    9   10   12   14   15   17   19   21   24   28   32   34   38 
LCS_GDT     L     120     L     120      4    6   11     3    4    4    5    6    8    8    9   10   12   14   15   17   19   21   24   28   32   34   38 
LCS_GDT     P     121     P     121      4    7   11     3    4    6    6    6    8    9    9   10   12   14   15   17   19   20   24   27   29   32   37 
LCS_GDT     G     122     G     122      5    7   11     3    5    5    6    6    8    9    9   10   12   14   15   17   19   21   24   28   32   34   38 
LCS_GDT     I     123     I     123      5    7   11     3    5    6    6    6    8    9    9   10   13   18   20   23   24   26   27   30   34   35   38 
LCS_GDT     N     124     N     124      5    7   11     3    5    6    6    6    8    9    9   11   11   13   19   20   24   26   29   32   35   37   40 
LCS_GDT     L     125     L     125      5    7   11     3    5    6    6    6    8    9    9   12   14   16   20   22   24   27   30   34   38   42   45 
LCS_GDT     E     126     E     126      5    7   11     1    5    6    6    6    8   10   13   14   18   21   24   27   30   33   39   42   43   49   58 
LCS_GDT     F     127     F     127      5    7   11     0    5    6    6    6    8   11   14   23   24   28   28   34   37   40   46   49   54   60   62 
LCS_AVERAGE  LCS_A:  15.40  (   5.96    9.66   30.59 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     14     20     25     30     34     38     41     46     47     51     53     55     57     59     59     60     63     65     68 
GDT PERCENT_CA   9.60  11.20  16.00  20.00  24.00  27.20  30.40  32.80  36.80  37.60  40.80  42.40  44.00  45.60  47.20  47.20  48.00  50.40  52.00  54.40
GDT RMS_LOCAL    0.28   0.66   1.05   1.35   1.56   1.75   2.05   2.29   2.78   2.84   3.34   3.48   3.67   3.81   4.01   4.01   4.16   5.29   5.27   5.76
GDT RMS_ALL_CA  23.47  18.67  18.46  18.58  18.56  18.53  18.46  18.58  19.46  19.35  18.89  18.72  18.78  18.90  18.95  18.95  19.09  18.05  18.22  18.04

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         35.682
LGA    M       4      M       4         29.866
LGA    N       5      N       5         27.714
LGA    L       6      L       6         27.180
LGA    K       7      K       7         23.664
LGA    R       8      R       8         16.818
LGA    E       9      E       9         15.633
LGA    Q      10      Q      10         15.464
LGA    E      11      E      11         12.437
LGA    F      12      F      12          6.909
LGA    V      13      V      13          6.839
LGA    S      14      S      14          6.741
LGA    Q      15      Q      15          2.462
LGA    Y      16      Y      16          3.614
LGA    H      17      H      17          3.305
LGA    F      18      F      18          2.749
LGA    D      19      D      19          1.202
LGA    A      20      A      20          2.526
LGA    R      21      R      21          3.151
LGA    N      22      N      22          6.299
LGA    F      23      F      23         10.630
LGA    E      24      E      24         16.305
LGA    W      25      W      25         18.314
LGA    E      26      E      26         16.352
LGA    N      27      N      27         14.441
LGA    E      28      E      28         17.688
LGA    N      29      N      29         15.844
LGA    G      30      G      30         14.848
LGA    A      31      A      31         10.099
LGA    P      32      P      32          9.743
LGA    E      33      E      33          3.747
LGA    T      34      T      34          2.283
LGA    K      35      K      35          0.650
LGA    V      36      V      36          0.937
LGA    D      37      D      37          2.069
LGA    V      38      V      38          1.434
LGA    N      39      N      39          2.049
LGA    F      40      F      40          0.622
LGA    Q      41      Q      41          1.844
LGA    L      42      L      42          1.571
LGA    L      43      L      43          1.488
LGA    Q      44      Q      44          1.389
LGA    H      45      H      45          3.182
LGA    D      46      D      46          1.499
LGA    Q      47      Q      47          5.978
LGA    E      48      E      48          8.998
LGA    N      49      N      49          6.536
LGA    Q      50      Q      50          0.682
LGA    V      51      V      51          1.748
LGA    T      52      T      52          3.839
LGA    S      53      S      53          1.677
LGA    L      54      L      54          2.687
LGA    I      55      I      55          2.243
LGA    V      56      V      56          0.839
LGA    I      57      I      57          1.317
LGA    L      58      L      58          0.932
LGA    S      59      S      59          1.503
LGA    F      60      F      60          1.655
LGA    M      61      M      61          1.399
LGA    I      62      I      62          1.711
LGA    V      63      V      63          3.614
LGA    F      64      F      64          5.056
LGA    D      65      D      65          7.480
LGA    K      66      K      66          8.680
LGA    F      67      F      67          4.807
LGA    V      68      V      68          3.972
LGA    I      69      I      69          2.017
LGA    S      70      S      70          1.220
LGA    G      71      G      71          4.318
LGA    T      72      T      72          3.760
LGA    I      73      I      73          3.992
LGA    S      74      S      74          3.700
LGA    Q      75      Q      75          6.587
LGA    V      76      V      76         13.162
LGA    N      77      N      77         12.670
LGA    H      78      H      78         15.074
LGA    I      79      I      79         21.394
LGA    D      80      D      80         23.656
LGA    G      81      G      81         24.480
LGA    R      82      R      82         27.719
LGA    I      83      I      83         32.351
LGA    V      84      V      84         31.188
LGA    N      85      N      85         33.654
LGA    E      86      E      86         36.199
LGA    P      87      P      87         35.915
LGA    S      88      S      88         40.772
LGA    E      89      E      89         39.878
LGA    L      90      L      90         35.067
LGA    N      91      N      91         36.618
LGA    Q      92      Q      92         32.392
LGA    E      93      E      93         29.675
LGA    E      94      E      94         28.969
LGA    V      95      V      95         25.194
LGA    E      96      E      96         21.197
LGA    T      97      T      97         20.808
LGA    L      98      L      98         19.091
LGA    A      99      A      99         14.567
LGA    R     100      R     100         12.250
LGA    P     101      P     101         11.320
LGA    C     102      C     102          7.878
LGA    L     103      L     103          6.469
LGA    N     104      N     104          6.798
LGA    M     105      M     105          7.051
LGA    L     106      L     106          5.987
LGA    N     107      N     107          7.444
LGA    R     108      R     108         11.325
LGA    L     109      L     109         12.871
LGA    T     110      T     110         14.362
LGA    Y     111      Y     111         17.491
LGA    E     112      E     112         23.825
LGA    V     113      V     113         25.414
LGA    T     114      T     114         28.822
LGA    E     115      E     115         32.280
LGA    I     116      I     116         32.646
LGA    A     117      A     117         36.181
LGA    L     118      L     118         37.094
LGA    D     119      D     119         40.753
LGA    L     120      L     120         41.226
LGA    P     121      P     121         36.696
LGA    G     122      G     122         30.043
LGA    I     123      I     123         27.274
LGA    N     124      N     124         24.846
LGA    L     125      L     125         20.433
LGA    E     126      E     126         18.840
LGA    F     127      F     127         14.372

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     41    2.29    27.800    24.844     1.714

LGA_LOCAL      RMSD =  2.292  Number of atoms =   41  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.695  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 16.726  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.663520 * X  +  -0.665258 * Y  +  -0.342305 * Z  +  13.554327
  Y_new =  -0.403961 * X  +  -0.066542 * Y  +   0.912353 * Z  +  30.061596
  Z_new =  -0.629728 * X  +   0.743642 * Y  +  -0.224587 * Z  +   8.782626 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.864095   -1.277497  [ DEG:   106.8048    -73.1952 ]
  Theta =   0.681203    2.460390  [ DEG:    39.0301    140.9700 ]
  Phi   =  -2.594717    0.546876  [ DEG:  -148.6663     31.3337 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS599_1                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS599_1.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   41   2.29  24.844    16.73
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS599_1
PFRMAT TS                                                                       
TARGET T0383                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  SER     1      17.536   9.794  14.938  1.00  0.00              
ATOM      2  CA  ASN     2      15.933  13.010  16.238  1.00  0.00              
ATOM      3  CA  ALA     3      16.642   9.998  13.395  1.00  0.00              
ATOM      4  CA  MET     4      16.059  13.267  15.085  1.00  0.00              
ATOM      5  CA  ASN     5      17.376  15.239  12.068  1.00  0.00              
ATOM      6  CA  LEU     6      15.229  13.354   9.591  1.00  0.00              
ATOM      7  CA  LYS     7      12.030  13.836  11.660  1.00  0.00              
ATOM      8  CA  ARG     8      12.471  17.566  12.143  1.00  0.00              
ATOM      9  CA  GLU     9      13.166  18.385   8.497  1.00  0.00              
ATOM     10  CA  GLN    10      10.392  16.542   6.600  1.00  0.00              
ATOM     11  CA  GLU    11       7.874  18.103   9.018  1.00  0.00              
ATOM     12  CA  PHE    12       9.137  21.525   7.862  1.00  0.00              
ATOM     13  CA  VAL    13       8.797  20.631   4.149  1.00  0.00              
ATOM     14  CA  SER    14       5.218  19.375   4.678  1.00  0.00              
ATOM     15  CA  GLN    15       4.356  22.553   6.663  1.00  0.00              
ATOM     16  CA  TYR    16       5.567  24.754   3.919  1.00  0.00              
ATOM     17  CA  HIS    17       4.313  23.049   0.728  1.00  0.00              
ATOM     18  CA  PHE    18       6.734  23.057  -2.141  1.00  0.00              
ATOM     19  CA  ASP    19       5.726  22.872  -5.759  1.00  0.00              
ATOM     20  CA  ALA    20       8.075  24.620  -8.100  1.00  0.00              
ATOM     21  CA  ARG    21       6.359  24.805 -11.449  1.00  0.00              
ATOM     22  CA  ASN    22       6.445  28.538 -12.428  1.00  0.00              
ATOM     23  CA  PHE    23       9.328  29.866 -10.354  1.00  0.00              
ATOM     24  CA  GLU    24      11.486  32.355 -12.142  1.00  0.00              
ATOM     25  CA  TRP    25      11.651  35.530 -10.028  1.00  0.00              
ATOM     26  CA  GLU    26      11.571  37.997 -12.977  1.00  0.00              
ATOM     27  CA  ASN    27       8.656  36.374 -14.720  1.00  0.00              
ATOM     28  CA  GLU    28       7.284  38.813 -17.245  1.00  0.00              
ATOM     29  CA  ASN    29       5.104  40.897 -15.061  1.00  0.00              
ATOM     30  CA  GLY    30       8.032  42.311 -13.016  1.00  0.00              
ATOM     31  CA  ALA    31       6.293  41.618  -9.762  1.00  0.00              
ATOM     32  CA  PRO    32       8.504  39.612  -7.384  1.00  0.00              
ATOM     33  CA  GLU    33       6.004  37.661  -5.306  1.00  0.00              
ATOM     34  CA  THR    34       7.393  37.530  -1.858  1.00  0.00              
ATOM     35  CA  LYS    35       5.020  37.210   1.026  1.00  0.00              
ATOM     36  CA  VAL    36       6.530  37.409   4.458  1.00  0.00              
ATOM     37  CA  ASP    37       4.669  36.172   7.451  1.00  0.00              
ATOM     38  CA  VAL    38       5.968  36.769  10.933  1.00  0.00              
ATOM     39  CA  ASN    39       4.512  34.904  13.741  1.00  0.00              
ATOM     40  CA  PHE    40       5.359  35.825  17.290  1.00  0.00              
ATOM     41  CA  GLN    41       4.767  33.367  20.069  1.00  0.00              
ATOM     42  CA  LEU    42       4.912  34.485  23.580  1.00  0.00              
ATOM     43  CA  LEU    43       5.271  31.939  26.291  1.00  0.00              
ATOM     44  CA  GLN    44       3.636  32.762  29.613  1.00  0.00              
ATOM     45  CA  HIS    45       3.076  34.817  32.663  1.00  0.00              
ATOM     46  CA  ASP    46       6.484  34.469  34.279  1.00  0.00              
ATOM     47  CA  GLN    47       8.096  35.248  30.940  1.00  0.00              
ATOM     48  CA  GLU    48       6.311  38.635  30.768  1.00  0.00              
ATOM     49  CA  ASN    49       7.534  39.892  34.094  1.00  0.00              
ATOM     50  CA  GLN    50      11.057  38.543  33.677  1.00  0.00              
ATOM     51  CA  VAL    51      11.222  38.248  29.852  1.00  0.00              
ATOM     52  CA  THR    52      11.938  34.589  29.400  1.00  0.00              
ATOM     53  CA  SER    53      10.527  32.908  26.305  1.00  0.00              
ATOM     54  CA  LEU    54       9.870  34.645  23.024  1.00  0.00              
ATOM     55  CA  ILE    55       9.457  32.520  20.000  1.00  0.00              
ATOM     56  CA  VAL    56       9.615  33.990  16.648  1.00  0.00              
ATOM     57  CA  ILE    57       8.294  32.140  13.755  1.00  0.00              
ATOM     58  CA  LEU    58       9.169  33.202  10.282  1.00  0.00              
ATOM     59  CA  SER    59       7.300  32.070   7.380  1.00  0.00              
ATOM     60  CA  PHE    60       8.191  33.014   3.937  1.00  0.00              
ATOM     61  CA  MET    61       5.845  32.483   1.100  1.00  0.00              
ATOM     62  CA  ILE    62       6.779  32.673  -2.332  1.00  0.00              
ATOM     63  CA  VAL    63       4.122  32.861  -4.938  1.00  0.00              
ATOM     64  CA  PHE    64       4.947  32.502  -8.583  1.00  0.00              
ATOM     65  CA  ASP    65       2.240  32.352 -11.170  1.00  0.00              
ATOM     66  CA  LYS    66       0.741  29.004 -10.007  1.00  0.00              
ATOM     67  CA  PHE    67       3.695  27.521  -8.097  1.00  0.00              
ATOM     68  CA  VAL    68       3.750  27.780  -4.267  1.00  0.00              
ATOM     69  CA  ILE    69       6.988  27.767  -2.378  1.00  0.00              
ATOM     70  CA  SER    70       6.991  27.720   1.301  1.00  0.00              
ATOM     71  CA  GLY    71      10.141  28.718   3.179  1.00  0.00              
ATOM     72  CA  THR    72      10.353  28.479   6.877  1.00  0.00              
ATOM     73  CA  ILE    73      12.737  30.485   8.586  1.00  0.00              
ATOM     74  CA  SER    74      13.040  29.731  12.138  1.00  0.00              
ATOM     75  CA  GLN    75      13.080  25.969  11.274  1.00  0.00              
ATOM     76  CA  VAL    76      15.779  26.437   8.624  1.00  0.00              
ATOM     77  CA  ASN    77      17.951  28.438  11.049  1.00  0.00              
ATOM     78  CA  HIS    78      17.554  25.626  13.632  1.00  0.00              
ATOM     79  CA  ILE    79      18.809  23.191  10.985  1.00  0.00              
ATOM     80  CA  ASP    80      21.764  25.432  10.108  1.00  0.00              
ATOM     81  CA  GLY    81      22.846  25.855  13.715  1.00  0.00              
ATOM     82  CA  ARG    82      22.784  22.053  14.124  1.00  0.00              
ATOM     83  CA  ILE    83      24.958  21.357  11.082  1.00  0.00              
ATOM     84  CA  VAL    84      27.615  24.064  11.801  1.00  0.00              
ATOM     85  CA  ASN    85      28.002  22.978  15.407  1.00  0.00              
ATOM     86  CA  GLU    86      28.497  19.258  15.239  1.00  0.00              
ATOM     87  CA  PRO    87      32.151  19.277  14.333  1.00  0.00              
ATOM     88  CA  SER    88      32.167  15.839  12.879  1.00  0.00              
ATOM     89  CA  GLU    89      29.384  16.297  10.536  1.00  0.00              
ATOM     90  CA  LEU    90      30.116  19.360   8.748  1.00  0.00              
ATOM     91  CA  ASN    91      33.242  20.344   6.852  1.00  0.00              
ATOM     92  CA  GLN    92      34.525  23.918   7.475  1.00  0.00              
ATOM     93  CA  GLU    93      33.613  24.774   3.877  1.00  0.00              
ATOM     94  CA  GLU    94      30.119  23.343   4.162  1.00  0.00              
ATOM     95  CA  VAL    95      29.527  25.375   7.376  1.00  0.00              
ATOM     96  CA  GLU    96      30.459  28.552   5.585  1.00  0.00              
ATOM     97  CA  THR    97      28.067  27.623   2.746  1.00  0.00              
ATOM     98  CA  LEU    98      25.321  26.991   5.297  1.00  0.00              
ATOM     99  CA  ALA    99      25.692  30.276   7.239  1.00  0.00              
ATOM    100  CA  ARG   100      25.536  32.011   3.843  1.00  0.00              
ATOM    101  CA  PRO   101      22.394  30.256   2.483  1.00  0.00              
ATOM    102  CA  CYS   102      20.459  31.092   5.597  1.00  0.00              
ATOM    103  CA  LEU   103      21.483  34.770   5.437  1.00  0.00              
ATOM    104  CA  ASN   104      20.476  34.962   1.764  1.00  0.00              
ATOM    105  CA  MET   105      17.050  33.426   2.370  1.00  0.00              
ATOM    106  CA  LEU   106      16.380  35.846   5.271  1.00  0.00              
ATOM    107  CA  ASN   107      17.432  38.728   3.035  1.00  0.00              
ATOM    108  CA  ARG   108      14.993  37.768   0.248  1.00  0.00              
ATOM    109  CA  LEU   109      12.101  37.541   2.759  1.00  0.00              
ATOM    110  CA  THR   110      12.956  40.821   4.577  1.00  0.00              
ATOM    111  CA  TYR   111      13.044  40.415   8.323  1.00  0.00              
ATOM    112  CA  GLU   112      13.623  43.274  10.831  1.00  0.00              
ATOM    113  CA  VAL   113      15.385  42.040  13.975  1.00  0.00              
ATOM    114  CA  THR   114      17.137  45.152  15.138  1.00  0.00              
ATOM    115  CA  GLU   115      18.028  43.990  18.677  1.00  0.00              
ATOM    116  CA  ILE   116      17.593  40.239  19.249  1.00  0.00              
ATOM    117  CA  ALA   117      17.225  39.173  22.881  1.00  0.00              
ATOM    118  CA  LEU   118      17.657  35.583  23.854  1.00  0.00              
ATOM    119  CA  ASP   119      14.986  34.718  26.454  1.00  0.00              
ATOM    120  CA  LEU   120      15.326  31.598  28.535  1.00  0.00              
ATOM    121  CA  PRO   121      14.515  28.555  26.381  1.00  0.00              
ATOM    122  CA  GLY   122      16.779  29.817  23.589  1.00  0.00              
ATOM    123  CA  ILE   123      14.412  31.578  21.225  1.00  0.00              
ATOM    124  CA  ASN   124      14.262  35.308  21.302  1.00  0.00              
ATOM    125  CA  LEU   125      12.866  37.254  18.626  1.00  0.00              
ATOM    126  CA  GLU   126      13.563  40.955  18.485  1.00  0.00              
ATOM    127  CA  PHE   127      11.827  43.050  15.970  1.00  0.00              
TER                                                                             
END
