
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS393_2
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS393_2.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37        83 - 119         4.96    21.58
  LONGEST_CONTINUOUS_SEGMENT:    37        84 - 120         4.65    22.37
  LONGEST_CONTINUOUS_SEGMENT:    37        85 - 121         4.82    22.72
  LCS_AVERAGE:     21.83

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        94 - 117         1.87    18.73
  LONGEST_CONTINUOUS_SEGMENT:    24        95 - 118         1.96    19.39
  LCS_AVERAGE:      8.92

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        99 - 117         0.73    19.00
  LCS_AVERAGE:      5.65

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      3    6   13     0    3    4    5    7    8    9   10   11   14   16   19   20   21   24   26   28   31   34   42 
LCS_GDT     M       4     M       4      3    6   13     1    3    4    5    6    6    8   10   11   11   12   13   17   18   24   26   28   36   38   42 
LCS_GDT     N       5     N       5      3    6   13     0    3    4    5    6    6    8   10   11   11   11   12   14   14   24   25   28   31   34   36 
LCS_GDT     L       6     L       6      3    6   13     0    3    4    5    6    6    8   10   11   11   11   15   18   23   25   37   37   41   42   44 
LCS_GDT     K       7     K       7      3    6   13     0    3    4    5    6    6    8   10   11   11   11   13   17   24   28   28   32   35   38   48 
LCS_GDT     R       8     R       8      4    6   13     3    4    4    5    6    6    8   10   11   11   16   17   25   28   32   36   40   43   46   49 
LCS_GDT     E       9     E       9      4    6   13     3    4    4    5    5    6    6    8    9   10   11   15   19   28   30   36   40   43   46   49 
LCS_GDT     Q      10     Q      10      4    6   13     3    4    4    5    5    6    7    8    9   10   16   18   25   28   32   36   40   43   46   49 
LCS_GDT     E      11     E      11      4    6   13     3    4    4    5    5    6    6    7    9   10   13   16   25   28   32   37   40   43   46   49 
LCS_GDT     F      12     F      12      3    3   13     3    3    3    4    7    7   12   15   17   19   22   26   28   33   35   38   46   56   65   67 
LCS_GDT     V      13     V      13      5    5   13     4    4    5    6    8   10   12   15   18   22   23   26   30   33   35   37   46   50   57   62 
LCS_GDT     S      14     S      14      5    5   13     4    4    5    5    5    7   10   12   17   21   23   26   30   33   35   39   46   55   65   65 
LCS_GDT     Q      15     Q      15      5    5   13     4    4    5    6    8   10   12   15   19   22   23   26   30   33   35   39   44   50   59   64 
LCS_GDT     Y      16     Y      16      5    5   16     4    4    6    8   10   13   16   16   17   22   23   26   28   29   32   35   38   41   55   59 
LCS_GDT     H      17     H      17      5    5   16     3    3    5   11   13   13   16   16   17   18   22   25   28   29   32   34   38   39   43   56 
LCS_GDT     F      18     F      18      3    5   16     3    5    7   11   13   13   16   16   17   18   22   25   28   29   32   34   36   39   43   46 
LCS_GDT     D      19     D      19      4    5   16     3    4    4    4   13   13   16   16   17   18   22   25   28   29   32   34   36   39   41   46 
LCS_GDT     A      20     A      20      4    5   16     3    4    4    5    6    7    8    9   11   12   13   19   20   23   28   32   34   36   41   46 
LCS_GDT     R      21     R      21      4    5   16     3    4    4    5    6    7    8    9   11   12   17   20   24   27   30   34   36   39   43   46 
LCS_GDT     N      22     N      22      4    4   16     3    4    4    4    5    7    7   13   15   18   21   23   26   26   28   29   31   39   41   49 
LCS_GDT     F      23     F      23      6    7   16     5    6    6    6    7   11   13   15   17   19   21   23   26   26   26   26   29   30   32   36 
LCS_GDT     E      24     E      24      6    7   16     5    6    6    6    7   11   14   15   17   19   20   23   26   26   26   26   29   30   32   34 
LCS_GDT     W      25     W      25      6    7   16     5    6    6    6    7   11   14   15   17   19   21   23   26   26   26   28   30   32   34   36 
LCS_GDT     E      26     E      26      6    7   16     5    6    6    6    6   11   14   15   17   19   21   23   26   26   28   30   32   39   42   49 
LCS_GDT     N      27     N      27      6    7   20     5    6    6    6    7   11   14   15   17   19   21   23   26   26   28   29   31   35   37   49 
LCS_GDT     E      28     E      28      6    7   20     5    6    6    6    6    9   10   10   17   19   20   21   26   26   26   28   30   37   41   47 
LCS_GDT     N      29     N      29      4    7   26     3    4    4    6    7   11   14   15   17   19   21   26   31   36   38   43   46   51   60   65 
LCS_GDT     G      30     G      30      4    5   27     3    4    4    6    7   11   14   15   17   23   29   34   38   42   50   55   58   62   63   66 
LCS_GDT     A      31     A      31      4    5   31     3    4    4    6    7   11   14   15   17   19   28   32   38   42   50   55   58   62   63   66 
LCS_GDT     P      32     P      32      4    9   31     3    4    4    6    7   10   14   16   19   25   30   34   38   42   47   53   58   62   63   66 
LCS_GDT     E      33     E      33      4    9   31     3    3    5    8   10   14   17   20   25   33   41   47   51   53   53   56   58   62   66   68 
LCS_GDT     T      34     T      34      4   11   31     3    3    5   14   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     K      35     K      35      4   11   31     6   14   18   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     V      36     V      36      4   11   31     3    3   13   22   23   25   27   28   32   35   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     D      37     D      37      5   11   31     3    4    8   10   22   25   27   28   30   35   41   47   51   53   53   56   60   62   66   68 
LCS_GDT     V      38     V      38      5   11   31     3    4    8   10   12   14   17   20   23   27   32   38   43   49   52   56   60   62   66   68 
LCS_GDT     N      39     N      39      5   11   31     3    4    8   10   12   14   17   20   23   27   32   35   41   48   51   55   57   62   64   68 
LCS_GDT     F      40     F      40      5   11   31     3    4    8   10   12   14   17   20   23   27   32   35   38   42   49   55   57   62   63   66 
LCS_GDT     Q      41     Q      41      5   11   31     3    4    8   10   12   14   17   20   23   27   32   35   38   42   46   52   56   58   62   65 
LCS_GDT     L      42     L      42      5   11   31     3    4    6   10   12   14   17   20   23   27   32   35   38   42   46   52   54   58   62   65 
LCS_GDT     L      43     L      43      4   11   31     3    4    8    9   12   14   17   20   22   27   32   35   42   48   51   55   57   62   63   66 
LCS_GDT     Q      44     Q      44      4   11   31     3    4    6   10   12   14   17   20   23   27   32   35   38   42   46   48   53   58   62   65 
LCS_GDT     H      45     H      45      3    9   31     3    3    5    6    9   14   16   18   23   26   32   35   38   42   46   48   50   55   58   62 
LCS_GDT     D      46     D      46      4    9   31     4    4    5   10   12   14   16   20   23   27   32   35   38   42   46   48   53   56   61   65 
LCS_GDT     Q      47     Q      47      4    6   31     4    4    4    4    5    8   14   18   23   27   32   35   38   42   46   48   53   55   59   63 
LCS_GDT     E      48     E      48      4    6   31     4    4    4    4    5    6    9   11   17   22   29   35   38   42   46   48   53   57   62   65 
LCS_GDT     N      49     N      49      4    6   31     4    4    4    4    7    8   14   18   23   26   32   35   38   42   46   48   53   57   62   65 
LCS_GDT     Q      50     Q      50      5    8   31     3    3    5    6    8   10   12   18   23   25   30   33   38   42   46   48   50   55   58   62 
LCS_GDT     V      51     V      51      5    8   31     4    5    6    8    9   12   15   20   23   27   32   35   38   42   46   52   54   59   63   65 
LCS_GDT     T      52     T      52      5    8   31     4    5    6    8    9   12   16   20   23   27   32   35   38   42   46   52   56   62   63   65 
LCS_GDT     S      53     S      53      5    8   31     4    5    6    8    9   12   17   20   23   27   32   35   42   48   51   55   58   62   63   66 
LCS_GDT     L      54     L      54      5    8   31     4    5    6    8    9   12   17   20   23   27   32   37   45   48   52   55   58   62   64   68 
LCS_GDT     I      55     I      55      5    8   31     2    5    6    8   12   14   16   22   26   35   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     V      56     V      56      5    8   31     1    3    5    8   12   14   16   23   30   35   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     I      57     I      57      5    8   31     3   11   15   18   23   24   28   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     L      58     L      58      5    8   31     6   15   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     S      59     S      59      5    7   31     3    4    5    9   12   17   20   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     F      60     F      60      5    7   31     3    4    8   10   12   14   18   20   27   35   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     M      61     M      61      5    7   31     3    3    5    6    7   10   17   19   22   26   36   45   51   53   53   56   60   62   66   68 
LCS_GDT     I      62     I      62      5    7   31     3    3    5    6   10   12   20   32   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     V      63     V      63      5    7   22     3    3    5    6   10   16   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     F      64     F      64      5    7   22     0    5    8   16   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     D      65     D      65      5    7   22     3    5    8   16   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     K      66     K      66      5    7   22     3    5    9   16   21   24   26   33   36   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     F      67     F      67      5    7   22     3    4    9   16   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     V      68     V      68      5    7   22     3    4    8   15   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     I      69     I      69      4    7   22     3    5    9   16   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     S      70     S      70      3    5   22     1    3    5    8    9   11   17   22   28   36   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     G      71     G      71      3    5   22     0    3    3    6    8   11   17   22   28   36   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     T      72     T      72      3    5   22     1    4    6    7   10   12   17   20   23   27   32   36   45   50   53   56   60   62   66   68 
LCS_GDT     I      73     I      73      3    5   22     1    4    5    7    9   12   17   22   26   36   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     S      74     S      74      3    5   22     0    4    5    7    9   13   15   22   26   36   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     Q      75     Q      75      4    7   22     3    4    6    7    9   11   14   18   23   28   35   44   47   50   53   56   60   62   66   68 
LCS_GDT     V      76     V      76      4    8   22     3    3    6    8   12   13   15   19   23   27   32   42   47   50   52   56   58   62   66   68 
LCS_GDT     N      77     N      77      4    8   17     3    4    6    7    9   10   12   16   20   25   31   37   42   49   52   55   60   62   66   68 
LCS_GDT     H      78     H      78      4    8   17     3    4    6    7    9   10   11   14   20   20   22   27   32   40   47   54   60   62   66   68 
LCS_GDT     I      79     I      79      4    8   18     3    4    6    7    9   10   11   16   20   23   26   30   33   43   49   54   60   62   65   68 
LCS_GDT     D      80     D      80      4    8   18     3    4    5    7    9   10   11   16   20   20   25   30   32   39   42   46   60   62   65   67 
LCS_GDT     G      81     G      81      3    8   18     3    3    6    7    9   10   11   16   20   23   26   30   33   39   43   46   52   60   65   67 
LCS_GDT     R      82     R      82      3    8   18     3    3    5    5    9    9   11   14   20   26   31   36   42   49   52   55   60   62   66   68 
LCS_GDT     I      83     I      83      4    8   37     1    3    4    5    9    9   10   11   11   13   21   29   36   48   52   54   60   62   66   68 
LCS_GDT     V      84     V      84      4    8   37     1    3    4    5    9    9   13   22   30   36   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     N      85     N      85      4    5   37     3    3    4    5    8   10   17   20   28   33   41   46   48   51   53   56   58   62   66   68 
LCS_GDT     E      86     E      86      4    5   37     3   10   11   13   16   18   24   26   28   30   33   33   36   40   45   48   57   60   62   66 
LCS_GDT     P      87     P      87      3    5   37     3    3    3    5    6    7   12   23   28   30   33   33   34   34   35   42   45   53   57   61 
LCS_GDT     S      88     S      88      4   16   37     3    4    5    6   14   16   17   21   25   29   33   33   34   34   38   42   49   53   59   64 
LCS_GDT     E      89     E      89      4   17   37     3    4    9   14   16   19   20   25   28   30   33   37   40   47   53   55   58   62   66   68 
LCS_GDT     L      90     L      90     11   18   37     4    9   11   14   16   20   24   26   31   36   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     N      91     N      91     11   18   37     3    4   11   14   16   20   24   28   34   36   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     Q      92     Q      92     11   18   37     8   10   11   14   16   20   24   29   35   37   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     E      93     E      93     11   22   37     8   10   11   16   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     E      94     E      94     11   24   37     8   10   11   16   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     V      95     V      95     11   24   37     8   10   11   16   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     E      96     E      96     11   24   37     8   10   11   16   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     T      97     T      97     11   24   37     8   14   18   21   22   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     L      98     L      98     17   24   37     8   10   11   15   21   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     A      99     A      99     19   24   37     9   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     R     100     R     100     19   24   37    13   17   20   22   23   25   27   33   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     P     101     P     101     19   24   37    13   17   20   22   23   25   27   33   37   38   41   47   51   53   53   56   58   62   66   68 
LCS_GDT     C     102     C     102     19   24   37    13   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     L     103     L     103     19   24   37    13   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     N     104     N     104     19   24   37    13   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     M     105     M     105     19   24   37    13   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     L     106     L     106     19   24   37    13   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     N     107     N     107     19   24   37    13   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     R     108     R     108     19   24   37    13   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     L     109     L     109     19   24   37    13   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     T     110     T     110     19   24   37    11   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     Y     111     Y     111     19   24   37    13   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     E     112     E     112     19   24   37    13   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     V     113     V     113     19   24   37     8   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     T     114     T     114     19   24   37     7   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     E     115     E     115     19   24   37     7   17   20   22   23   25   29   34   37   38   42   47   51   53   53   56   60   62   66   68 
LCS_GDT     I     116     I     116     19   24   37    13   17   20   22   23   25   27   34   37   38   41   45   49   53   53   55   58   62   66   68 
LCS_GDT     A     117     A     117     19   24   37     5   15   20   22   23   25   27   34   37   38   41   45   49   53   53   55   60   62   66   68 
LCS_GDT     L     118     L     118      5   24   37     3    4    5    9   22   25   27   28   30   31   33   35   39   44   48   53   57   61   66   68 
LCS_GDT     D     119     D     119      5   23   37     4    4    7   15   22   25   27   28   30   31   34   40   42   46   50   53   58   62   66   68 
LCS_GDT     L     120     L     120      5   10   37     4    4    5    6    7   10   12   21   25   27   29   30   33   44   50   53   58   62   66   68 
LCS_GDT     P     121     P     121      5    7   37     4    4    5    6    7    7    9   12   16   23   27   30   39   45   50   52   60   62   66   68 
LCS_GDT     G     122     G     122      4    7   33     4    4    4    6    7    7    9   11   11   11   13   14   15   17   20   25   27   34   44   46 
LCS_GDT     I     123     I     123      3    7   27     3    3    4    5    7    7    9   11   11   11   13   14   15   17   19   20   22   25   32   38 
LCS_GDT     N     124     N     124      4    6   16     3    4    4    5    5    7    9   11   11   11   13   14   15   17   17   18   18   21   22   24 
LCS_GDT     L     125     L     125      4    6   16     3    4    4    5    5    6    9   11   11   11   13   14   15   17   17   18   19   21   22   24 
LCS_GDT     E     126     E     126      4    5   16     3    4    4    5    5    6    8   11   11   11   13   14   15   17   17   18   18   21   23   27 
LCS_GDT     F     127     F     127      4    5   16     3    4    4    5    5    6    6    6    9   11   13   14   15   17   17   18   19   21   26   27 
LCS_AVERAGE  LCS_A:  12.13  (   5.65    8.92   21.83 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     17     20     22     23     25     29     34     37     38     42     47     51     53     53     56     60     62     66     68 
GDT PERCENT_CA  10.40  13.60  16.00  17.60  18.40  20.00  23.20  27.20  29.60  30.40  33.60  37.60  40.80  42.40  42.40  44.80  48.00  49.60  52.80  54.40
GDT RMS_LOCAL    0.30   0.58   0.80   1.08   1.22   1.72   2.40   2.69   2.85   2.95   3.89   4.11   4.31   4.41   4.41   4.91   5.67   5.51   6.01   6.23
GDT RMS_ALL_CA  19.64  19.22  18.82  18.59  18.57  19.00  16.87  17.06  17.16  17.07  16.00  16.04  16.17  16.32  16.32  15.94  16.08  15.87  16.28  16.14

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         45.662
LGA    M       4      M       4         39.609
LGA    N       5      N       5         36.498
LGA    L       6      L       6         29.583
LGA    K       7      K       7         26.733
LGA    R       8      R       8         22.340
LGA    E       9      E       9         24.541
LGA    Q      10      Q      10         23.771
LGA    E      11      E      11         20.813
LGA    F      12      F      12         15.508
LGA    V      13      V      13         15.174
LGA    S      14      S      14         15.925
LGA    Q      15      Q      15         13.512
LGA    Y      16      Y      16         14.317
LGA    H      17      H      17         16.019
LGA    F      18      F      18         21.529
LGA    D      19      D      19         24.991
LGA    A      20      A      20         28.872
LGA    R      21      R      21         25.864
LGA    N      22      N      22         22.901
LGA    F      23      F      23         25.413
LGA    E      24      E      24         28.883
LGA    W      25      W      25         24.399
LGA    E      26      E      26         19.021
LGA    N      27      N      27         22.769
LGA    E      28      E      28         24.088
LGA    N      29      N      29         20.560
LGA    G      30      G      30         15.615
LGA    A      31      A      31         14.359
LGA    P      32      P      32         14.167
LGA    E      33      E      33          7.881
LGA    T      34      T      34          2.959
LGA    K      35      K      35          3.318
LGA    V      36      V      36          5.382
LGA    D      37      D      37          6.365
LGA    V      38      V      38         10.062
LGA    N      39      N      39         13.322
LGA    F      40      F      40         16.812
LGA    Q      41      Q      41         19.489
LGA    L      42      L      42         22.104
LGA    L      43      L      43         20.740
LGA    Q      44      Q      44         27.063
LGA    H      45      H      45         33.056
LGA    D      46      D      46         32.007
LGA    Q      47      Q      47         32.720
LGA    E      48      E      48         30.836
LGA    N      49      N      49         30.535
LGA    Q      50      Q      50         32.701
LGA    V      51      V      51         25.595
LGA    T      52      T      52         23.196
LGA    S      53      S      53         18.750
LGA    L      54      L      54         15.022
LGA    I      55      I      55          9.943
LGA    V      56      V      56          7.644
LGA    I      57      I      57          3.639
LGA    L      58      L      58          1.204
LGA    S      59      S      59          3.852
LGA    F      60      F      60          5.460
LGA    M      61      M      61          6.810
LGA    I      62      I      62          4.457
LGA    V      63      V      63          3.824
LGA    F      64      F      64          2.774
LGA    D      65      D      65          3.719
LGA    K      66      K      66          5.809
LGA    F      67      F      67          3.477
LGA    V      68      V      68          2.285
LGA    I      69      I      69          3.437
LGA    S      70      S      70          7.089
LGA    G      71      G      71          7.803
LGA    T      72      T      72         10.385
LGA    I      73      I      73          7.590
LGA    S      74      S      74          7.568
LGA    Q      75      Q      75         11.478
LGA    V      76      V      76         11.925
LGA    N      77      N      77         11.121
LGA    H      78      H      78         11.947
LGA    I      79      I      79         14.383
LGA    D      80      D      80         15.272
LGA    G      81      G      81         16.206
LGA    R      82      R      82         11.274
LGA    I      83      I      83         12.175
LGA    V      84      V      84          9.773
LGA    N      85      N      85         12.235
LGA    E      86      E      86         17.219
LGA    P      87      P      87         17.469
LGA    S      88      S      88         17.994
LGA    E      89      E      89         13.059
LGA    L      90      L      90          8.835
LGA    N      91      N      91          7.760
LGA    Q      92      Q      92          6.404
LGA    E      93      E      93          3.009
LGA    E      94      E      94          2.606
LGA    V      95      V      95          3.342
LGA    E      96      E      96          2.437
LGA    T      97      T      97          2.175
LGA    L      98      L      98          2.822
LGA    A      99      A      99          1.296
LGA    R     100      R     100          4.009
LGA    P     101      P     101          4.048
LGA    C     102      C     102          1.591
LGA    L     103      L     103          1.705
LGA    N     104      N     104          2.943
LGA    M     105      M     105          2.328
LGA    L     106      L     106          1.338
LGA    N     107      N     107          1.874
LGA    R     108      R     108          1.342
LGA    L     109      L     109          1.560
LGA    T     110      T     110          2.040
LGA    Y     111      Y     111          1.348
LGA    E     112      E     112          1.267
LGA    V     113      V     113          2.483
LGA    T     114      T     114          2.884
LGA    E     115      E     115          2.731
LGA    I     116      I     116          3.590
LGA    A     117      A     117          3.880
LGA    L     118      L     118          9.689
LGA    D     119      D     119          8.731
LGA    L     120      L     120         11.264
LGA    P     121      P     121         11.959
LGA    G     122      G     122         17.324
LGA    I     123      I     123         20.948
LGA    N     124      N     124         26.632
LGA    L     125      L     125         26.848
LGA    E     126      E     126         30.837
LGA    F     127      F     127         29.844

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     34    2.69    25.800    21.713     1.219

LGA_LOCAL      RMSD =  2.688  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.157  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 13.963  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.441038 * X  +   0.730735 * Y  +   0.521067 * Z  +   9.653378
  Y_new =   0.877121 * X  +   0.227959 * Y  +   0.422722 * Z  +  28.625399
  Z_new =   0.190116 * X  +   0.643475 * Y  +  -0.741482 * Z  +   5.631360 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.426842   -0.714751  [ DEG:   139.0478    -40.9522 ]
  Theta =  -0.191280   -2.950313  [ DEG:   -10.9595   -169.0405 ]
  Phi   =   2.036701   -1.104891  [ DEG:   116.6944    -63.3056 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS393_2                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS393_2.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   34   2.69  21.713    13.96
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS393_2
PFRMAT TS
TARGET T0383
MODEL 2
PARENT N/A
ATOM      1  CA  SER     1       5.335   8.221  -4.530  1.00 25.00           C
ATOM      2  CA  ASN     2       1.872   9.810  -4.606  1.00 25.00           C
ATOM      3  CA  ALA     3       2.606  13.465  -5.144  1.00 25.00           C
ATOM      4  CA  MET     4       4.135  16.449  -3.345  1.00 25.00           C
ATOM      5  CA  ASN     5       4.252  18.822  -0.372  1.00 25.00           C
ATOM      6  CA  LEU     6       6.528  19.360   2.565  1.00 25.00           C
ATOM      7  CA  LYS     7       6.795  23.194   2.433  1.00 25.00           C
ATOM      8  CA  ARG     8       7.011  27.003   2.089  1.00 25.00           C
ATOM      9  CA  GLU     9       4.175  26.414  -0.442  1.00 25.00           C
ATOM     10  CA  GLN    10       2.261  29.668  -0.546  1.00 25.00           C
ATOM     11  CA  GLU    11      -0.703  27.906   1.121  1.00 25.00           C
ATOM     12  CA  PHE    12       0.371  29.275   4.533  1.00 25.00           C
ATOM     13  CA  VAL    13       0.626  32.803   3.065  1.00 25.00           C
ATOM     14  CA  SER    14      -2.873  32.451   1.546  1.00 25.00           C
ATOM     15  CA  GLN    15      -4.250  31.287   4.925  1.00 25.00           C
ATOM     16  CA  TYR    16      -3.255  29.427   8.158  1.00 25.00           C
ATOM     17  CA  HIS    17      -5.934  26.686   7.993  1.00 25.00           C
ATOM     18  CA  PHE    18      -8.269  29.618   7.968  1.00 25.00           C
ATOM     19  CA  ASP    19     -10.971  30.179  10.647  1.00 25.00           C
ATOM     20  CA  ALA    20     -10.064  33.751  11.586  1.00 25.00           C
ATOM     21  CA  ARG    21     -10.608  35.595   8.303  1.00 25.00           C
ATOM     22  CA  ASN    22      -7.507  35.230   6.233  1.00 25.00           C
ATOM     23  CA  PHE    23      -4.606  34.692   8.604  1.00 25.00           C
ATOM     24  CA  GLU    24      -4.054  38.234   9.952  1.00 25.00           C
ATOM     25  CA  TRP    25      -0.529  38.280   8.455  1.00 25.00           C
ATOM     26  CA  GLU    26      -1.920  37.121   5.080  1.00 25.00           C
ATOM     27  CA  ASN    27      -4.576  39.877   5.201  1.00 25.00           C
ATOM     28  CA  GLU    28      -1.878  42.478   5.986  1.00 25.00           C
ATOM     29  CA  ASN    29      -4.348  45.154   4.800  1.00 25.00           C
ATOM     30  CA  GLY    30      -4.031  44.442   1.058  1.00 25.00           C
ATOM     31  CA  ALA    31      -0.397  43.137   1.011  1.00 25.00           C
ATOM     32  CA  PRO    32       2.871  44.645   2.267  1.00 25.00           C
ATOM     33  CA  GLU    33       4.783  41.861   0.511  1.00 25.00           C
ATOM     34  CA  THR    34       5.449  38.208  -0.210  1.00 25.00           C
ATOM     35  CA  LYS    35       3.871  34.747  -0.554  1.00 25.00           C
ATOM     36  CA  VAL    36       6.900  32.766   0.568  1.00 25.00           C
ATOM     37  CA  ASP    37       5.838  32.237   4.200  1.00 25.00           C
ATOM     38  CA  VAL    38       5.203  28.896   6.005  1.00 25.00           C
ATOM     39  CA  ASN    39       6.583  25.475   7.070  1.00 25.00           C
ATOM     40  CA  PHE    40       6.980  21.980   8.541  1.00 25.00           C
ATOM     41  CA  GLN    41      10.371  20.471   7.544  1.00 25.00           C
ATOM     42  CA  LEU    42      11.875  18.690  10.549  1.00 25.00           C
ATOM     43  CA  LEU    43      11.507  16.261  13.462  1.00 25.00           C
ATOM     44  CA  GLN    44      13.511  13.251  12.377  1.00 25.00           C
ATOM     45  CA  HIS    45      15.174   9.924  12.953  1.00 25.00           C
ATOM     46  CA  ASP    46      13.356   8.925  16.126  1.00 25.00           C
ATOM     47  CA  GLN    47      10.779  11.537  17.222  1.00 25.00           C
ATOM     48  CA  GLU    48      13.276  12.983  19.740  1.00 25.00           C
ATOM     49  CA  ASN    49      15.958  13.167  17.010  1.00 25.00           C
ATOM     50  CA  GLN    50      19.448  13.261  15.587  1.00 25.00           C
ATOM     51  CA  VAL    51      19.428  16.846  16.972  1.00 25.00           C
ATOM     52  CA  THR    52      15.962  18.104  15.910  1.00 25.00           C
ATOM     53  CA  SER    53      15.210  20.956  13.508  1.00 25.00           C
ATOM     54  CA  LEU    54      12.212  23.218  12.741  1.00 25.00           C
ATOM     55  CA  ILE    55       9.177  25.341  11.851  1.00 25.00           C
ATOM     56  CA  VAL    56       6.874  28.281  11.291  1.00 25.00           C
ATOM     57  CA  ILE    57       4.885  31.491  10.517  1.00 25.00           C
ATOM     58  CA  LEU    58       8.194  32.366   8.872  1.00 25.00           C
ATOM     59  CA  SER    59       7.758  35.788   7.260  1.00 25.00           C
ATOM     60  CA  PHE    60       8.293  37.986   4.139  1.00 25.00           C
ATOM     61  CA  MET    61      10.739  35.217   3.207  1.00 25.00           C
ATOM     62  CA  ILE    62      10.294  36.604  -0.288  1.00 25.00           C
ATOM     63  CA  VAL    63       9.472  35.234  -3.725  1.00 25.00           C
ATOM     64  CA  PHE    64       8.576  34.584  -7.351  1.00 25.00           C
ATOM     65  CA  ASP    65       7.492  35.146 -10.931  1.00 25.00           C
ATOM     66  CA  LYS    66       4.881  33.087 -12.796  1.00 25.00           C
ATOM     67  CA  PHE    67       6.322  30.037 -11.099  1.00 25.00           C
ATOM     68  CA  VAL    68       5.632  28.968  -7.462  1.00 25.00           C
ATOM     69  CA  ILE    69       6.456  30.284  -4.005  1.00 25.00           C
ATOM     70  CA  SER    70      10.049  30.123  -5.353  1.00 25.00           C
ATOM     71  CA  GLY    71      10.732  28.163  -2.117  1.00 25.00           C
ATOM     72  CA  THR    72      11.618  31.564  -0.749  1.00 25.00           C
ATOM     73  CA  ILE    73      11.349  30.264   2.845  1.00 25.00           C
ATOM     74  CA  SER    74      10.289  28.734   6.125  1.00 25.00           C
ATOM     75  CA  GLN    75      11.622  25.191   6.099  1.00 25.00           C
ATOM     76  CA  VAL    76      13.312  26.779   9.135  1.00 25.00           C
ATOM     77  CA  ASN    77      11.781  29.579  11.262  1.00 25.00           C
ATOM     78  CA  HIS    78      10.026  31.197  14.257  1.00 25.00           C
ATOM     79  CA  ILE    79       8.645  28.280  16.279  1.00 25.00           C
ATOM     80  CA  ASP    80       7.236  29.522  19.605  1.00 25.00           C
ATOM     81  CA  GLY    81       5.443  31.507  22.390  1.00 25.00           C
ATOM     82  CA  ARG    82       6.987  34.996  22.566  1.00 25.00           C
ATOM     83  CA  ILE    83       9.922  34.420  20.184  1.00 25.00           C
ATOM     84  CA  VAL    84      11.886  34.395  23.441  1.00 25.00           C
ATOM     85  CA  ASN    85      12.378  34.621  27.205  1.00 25.00           C
ATOM     86  CA  GLU    86      15.402  33.763  29.294  1.00 25.00           C
ATOM     87  CA  PRO    87      18.160  36.173  30.141  1.00 25.00           C
ATOM     88  CA  SER    88      17.715  39.547  28.338  1.00 25.00           C
ATOM     89  CA  GLU    89      16.519  42.704  26.679  1.00 25.00           C
ATOM     90  CA  LEU    90      15.269  40.853  23.604  1.00 25.00           C
ATOM     91  CA  ASN    91      12.001  41.997  21.994  1.00 25.00           C
ATOM     92  CA  GLN    92      11.083  44.106  19.050  1.00 25.00           C
ATOM     93  CA  GLU    93      14.140  45.006  16.925  1.00 25.00           C
ATOM     94  CA  GLU    94      15.993  41.923  18.242  1.00 25.00           C
ATOM     95  CA  VAL    95      12.975  39.720  17.400  1.00 25.00           C
ATOM     96  CA  GLU    96      12.853  41.194  13.867  1.00 25.00           C
ATOM     97  CA  THR    97      16.596  40.511  13.427  1.00 25.00           C
ATOM     98  CA  LEU    98      16.101  36.900  14.603  1.00 25.00           C
ATOM     99  CA  ALA    99      13.213  36.464  12.126  1.00 25.00           C
ATOM    100  CA  ARG   100      15.394  37.852   9.300  1.00 25.00           C
ATOM    101  CA  PRO   101      18.207  35.433  10.251  1.00 25.00           C
ATOM    102  CA  CYS   102      15.732  32.510  10.237  1.00 25.00           C
ATOM    103  CA  LEU   103      14.462  33.571   6.783  1.00 25.00           C
ATOM    104  CA  ASN   104      18.061  33.752   5.487  1.00 25.00           C
ATOM    105  CA  MET   105      18.764  30.254   6.881  1.00 25.00           C
ATOM    106  CA  LEU   106      15.604  28.915   5.184  1.00 25.00           C
ATOM    107  CA  ASN   107      16.680  30.504   1.869  1.00 25.00           C
ATOM    108  CA  ARG   108      20.151  28.918   2.209  1.00 25.00           C
ATOM    109  CA  LEU   109      18.551  25.506   2.896  1.00 25.00           C
ATOM    110  CA  THR   110      16.320  25.903  -0.191  1.00 25.00           C
ATOM    111  CA  TYR   111      19.376  26.802  -2.315  1.00 25.00           C
ATOM    112  CA  GLU   112      21.229  23.719  -0.999  1.00 25.00           C
ATOM    113  CA  VAL   113      18.211  21.517  -1.841  1.00 25.00           C
ATOM    114  CA  THR   114      18.090  22.991  -5.373  1.00 25.00           C
ATOM    115  CA  GLU   115      21.833  22.308  -5.814  1.00 25.00           C
ATOM    116  CA  ILE   116      21.338  18.697  -4.638  1.00 25.00           C
ATOM    117  CA  ALA   117      18.450  18.260  -7.115  1.00 25.00           C
ATOM    118  CA  LEU   118      20.152  14.987  -7.934  1.00 25.00           C
ATOM    119  CA  ASP   119      23.890  15.483  -7.645  1.00 25.00           C
ATOM    120  CA  LEU   120      26.596  15.798 -10.345  1.00 25.00           C
ATOM    121  CA  PRO   121      26.115  17.140 -13.859  1.00 25.00           C
ATOM    122  CA  GLY   122      24.848  14.862 -16.629  1.00 25.00           C
ATOM    123  CA  ILE   123      22.403  12.646 -14.850  1.00 25.00           C
ATOM    124  CA  ASN   124      19.744  10.745 -16.699  1.00 25.00           C
ATOM    125  CA  LEU   125      17.058  13.432 -16.831  1.00 25.00           C
ATOM    126  CA  GLU   126      14.886  14.957 -19.551  1.00 25.00           C
ATOM    127  CA  PHE   127      15.744  18.702 -19.179  1.00 25.00           C
TER
END
