
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS393_1
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS393_1.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37        83 - 119         4.74    19.27
  LONGEST_CONTINUOUS_SEGMENT:    37        84 - 120         4.64    20.54
  LCS_AVERAGE:     23.07

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        94 - 117         1.87    17.38
  LONGEST_CONTINUOUS_SEGMENT:    24        95 - 118         1.90    17.78
  LONGEST_CONTINUOUS_SEGMENT:    24        96 - 119         1.81    18.23
  LCS_AVERAGE:      9.26

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        99 - 117         0.73    18.42
  LCS_AVERAGE:      5.95

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      4    6   15     3    3    5    6    6    7    8    9   17   19   21   23   30   35   39   41   42   44   46   49 
LCS_GDT     M       4     M       4      4    6   15     3    3    5    6    6    7    8    9   11   12   13   15   17   22   33   35   38   42   46   48 
LCS_GDT     N       5     N       5      4    6   15     3    3    5    6    6    7    8    9   11   12   13   15   17   20   22   30   34   37   40   42 
LCS_GDT     L       6     L       6      4    6   15     3    3    5    6    6    7    8    9   11   11   14   15   19   25   27   30   34   39   41   45 
LCS_GDT     K       7     K       7      3    6   15     3    3    4    6    6    7    8    9   11   12   14   15   18   20   23   28   32   39   48   50 
LCS_GDT     R       8     R       8      3    6   15     0    3    4    5    6    7    8    9   11   14   16   21   24   28   34   38   41   44   48   50 
LCS_GDT     E       9     E       9      3    5   15     3    3    6    7    9   12   13   14   17   18   20   24   26   30   34   38   42   45   48   54 
LCS_GDT     Q      10     Q      10      3    5   15     3    3    4    4    5    8   12   13   17   18   20   24   25   30   34   38   41   45   48   53 
LCS_GDT     E      11     E      11      3    5   15     3    3    4    4    5    7    8   10   10   13   20   22   24   28   34   38   41   44   48   53 
LCS_GDT     F      12     F      12      3    3   15     3    3    3    6    6   10   19   21   25   28   30   30   35   37   38   48   52   55   63   71 
LCS_GDT     V      13     V      13      3    5   15     3    3    6    8   12   13   19   23   25   28   30   30   35   37   41   48   52   57   66   71 
LCS_GDT     S      14     S      14      3    5   15     3    3    5    7   12   13   15   21   25   28   30   30   35   37   41   47   52   57   65   71 
LCS_GDT     Q      15     Q      15      3    5   17     3    3    4    7    9   11   15   18   20   24   28   32   34   36   40   45   46   54   61   64 
LCS_GDT     Y      16     Y      16      4    5   17     3    3    6    8    8   12   19   22   25   29   32   34   36   37   39   45   46   49   51   55 
LCS_GDT     H      17     H      17      4    5   17     3    3    4    6    7   10   15   21   25   29   32   34   36   37   39   41   44   49   51   55 
LCS_GDT     F      18     F      18      4    5   17     3    4    5    8   14   16   21   22   26   29   32   34   36   37   39   41   44   49   51   55 
LCS_GDT     D      19     D      19      4    6   17     4    4    6    6    7   14   19   22   26   29   32   34   36   37   39   41   43   49   51   55 
LCS_GDT     A      20     A      20      4    6   17     4    4    6    6    9   11   12   19   26   29   32   34   36   37   39   41   42   47   49   51 
LCS_GDT     R      21     R      21      4    6   17     4    4    6    6    9   11   14   21   26   29   32   34   36   37   39   41   43   49   51   55 
LCS_GDT     N      22     N      22      4    6   17     4    4    6    6    7    9   10   11   16   19   22   32   36   37   38   41   44   49   51   55 
LCS_GDT     F      23     F      23      6    6   17     5    6    6    6    8    9   12   12   13   14   15   18   19   22   25   30   38   42   44   45 
LCS_GDT     E      24     E      24      6    6   17     5    6    6    6    8    9   12   12   13   14   15   18   19   23   28   37   41   45   50   52 
LCS_GDT     W      25     W      25      6    6   17     5    6    6    6    8    9   12   12   13   14   15   18   19   25   34   39   42   45   50   55 
LCS_GDT     E      26     E      26      6    6   22     5    6    6    6    8    9   12   12   13   14   16   19   25   34   38   40   44   49   51   55 
LCS_GDT     N      27     N      27      6    6   22     5    6    6    6    8    9   12   12   13   14   15   18   25   31   38   40   44   49   51   55 
LCS_GDT     E      28     E      28      6    6   34     5    6    6    6    7    9   10   11   12   14   15   18   25   34   38   41   44   49   51   55 
LCS_GDT     N      29     N      29      4    6   34     3    3    4    6    7    9   13   22   26   29   32   34   36   39   41   45   54   58   65   71 
LCS_GDT     G      30     G      30      4    6   34     3    3    6    6   10   13   15   17   23   29   30   40   44   53   56   60   63   66   67   71 
LCS_GDT     A      31     A      31      4    6   34     3    3    4    7   10   13   20   22   30   36   44   48   51   56   59   61   63   66   67   71 
LCS_GDT     P      32     P      32      5    6   34     4    4    5   10   13   18   21   26   34   36   45   48   51   56   59   61   63   66   67   71 
LCS_GDT     E      33     E      33      5    6   34     4    4    5    7   11   19   21   30   36   42   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     T      34     T      34      5    6   34     4    4    5    7   10   19   29   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     K      35     K      35      5    9   34     4    4    5    7   11   21   31   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     V      36     V      36      7   10   34     4    7    7   10   14   18   21   22   26   30   38   46   50   56   59   61   63   66   67   71 
LCS_GDT     D      37     D      37      7   10   34     4    7    7   10   14   18   21   22   26   29   32   37   48   56   59   61   63   66   67   71 
LCS_GDT     V      38     V      38      7   10   34     3    4    7   10   14   18   21   22   26   29   32   41   49   56   59   61   63   66   67   71 
LCS_GDT     N      39     N      39      7   10   34     4    7    7   10   14   18   21   22   26   29   32   34   36   39   42   55   60   61   64   67 
LCS_GDT     F      40     F      40      7   10   34     3    7    7   10   14   18   21   22   26   29   32   34   36   39   42   49   53   58   62   66 
LCS_GDT     Q      41     Q      41      7   10   34     3    7    7    7   11   13   16   21   26   29   32   34   36   39   42   49   51   55   59   64 
LCS_GDT     L      42     L      42      7   10   34     3    7    7    9   13   18   21   22   26   29   32   34   36   39   41   45   47   51   55   64 
LCS_GDT     L      43     L      43      5   10   34     4    7    7    7   11   13   16   19   23   25   28   32   36   37   40   49   51   55   58   64 
LCS_GDT     Q      44     Q      44      4   10   34     3    4    6    7   11   13   16   19   23   25   30   34   36   37   39   43   47   51   54   64 
LCS_GDT     H      45     H      45      4   10   34     3    4    5    8   13   18   21   22   26   29   32   34   36   37   41   45   47   51   54   55 
LCS_GDT     D      46     D      46      4    8   34     4    4    6    8   13   18   21   22   26   29   32   34   36   39   41   45   47   51   55   64 
LCS_GDT     Q      47     Q      47      4    6   34     4    4    6    8   10   14   18   19   21   28   29   32   35   39   41   45   47   51   55   64 
LCS_GDT     E      48     E      48      4    5   34     4    4    4    4    5    8   10   12   16   20   21   24   30   32   35   38   45   48   56   62 
LCS_GDT     N      49     N      49      4    7   34     4    4    4    4    7   12   18   20   23   28   29   32   35   39   41   45   53   57   59   63 
LCS_GDT     Q      50     Q      50      4   10   34     3    4    6    9   14   18   21   22   26   29   32   34   36   39   41   45   46   49   51   55 
LCS_GDT     V      51     V      51      4   10   34     3    4    6    9   14   18   21   22   26   29   32   34   36   39   41   45   46   49   55   62 
LCS_GDT     T      52     T      52      4   10   34     3    3    6    8   14   18   21   22   26   29   32   34   36   39   41   47   53   57   60   66 
LCS_GDT     S      53     S      53      5   10   34     3    5    6    8   13   18   21   22   26   29   32   34   40   47   53   56   60   62   64   67 
LCS_GDT     L      54     L      54      5   10   34     3    5    6    8   14   18   21   22   26   29   32   40   48   53   57   59   62   66   67   68 
LCS_GDT     I      55     I      55      5   10   34     3    5    6    8   12   14   21   22   26   34   42   46   51   56   59   61   63   66   67   71 
LCS_GDT     V      56     V      56      5   10   34     3    5    7   10   14   18   21   25   39   42   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     I      57     I      57      5   10   34     3    5   10   14   17   24   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     L      58     L      58      5   10   34     3    4    7   10   14   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     S      59     S      59      5   10   34     3    4    6   10   17   27   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     F      60     F      60      5    7   34     3    3    5    6   11   16   21   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     M      61     M      61      5    7   34     3    4    5    6    7   13   13   19   23   31   42   47   50   54   59   60   63   66   67   71 
LCS_GDT     I      62     I      62      5    7   33     3    4    5    6    9   19   29   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     V      63     V      63      4    8   32     3    3    4    7   10   21   31   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     F      64     F      64      5    8   23     4    8   12   16   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     D      65     D      65      5    8   23     3    7   12   16   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     K      66     K      66      5    8   23     3    6   12   16   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     F      67     F      67      5    8   23     3    5   10   15   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     V      68     V      68      5    8   23     3    5    5    7   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     I      69     I      69      5    8   23     3    4    5    7    8   12   19   25   32   35   43   46   50   56   59   61   63   66   67   71 
LCS_GDT     S      70     S      70      5    8   23     3    4    5    7   10   12   22   36   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     G      71     G      71      4    5   23     3    3    4    5    8   11   19   29   39   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     T      72     T      72      4    5   23     3    3    5    6    7   10   11   14   19   21   30   41   50   56   59   61   63   66   67   71 
LCS_GDT     I      73     I      73      4    5   23     3    3    4    5    7   10   14   19   27   38   44   48   51   56   59   61   63   66   67   71 
LCS_GDT     S      74     S      74      5   11   23     3    4    5    9   10   12   15   15   18   23   30   41   49   56   59   61   63   66   67   71 
LCS_GDT     Q      75     Q      75      5   11   23     3    4    6    9   10   12   13   15   18   24   34   42   50   56   59   61   63   66   67   71 
LCS_GDT     V      76     V      76      5   11   22     3    4    5    9   10   12   13   14   17   20   26   32   36   49   58   61   63   66   67   71 
LCS_GDT     N      77     N      77      5   11   20     3    4    6    9   10   12   13   14   17   18   22   27   32   46   56   61   62   65   67   71 
LCS_GDT     H      78     H      78      5   11   22     4    5    6    9   10   12   13   14   17   18   22   25   29   35   42   49   60   65   67   71 
LCS_GDT     I      79     I      79      5   11   22     4    5    6    9   10   12   13   14   17   20   22   28   43   49   58   61   63   66   67   71 
LCS_GDT     D      80     D      80      5   11   22     4    5    6    9   10   12   13   14   16   18   20   24   27   31   35   47   55   62   66   71 
LCS_GDT     G      81     G      81      5   11   22     4    5    6    9   10   12   13   14   16   18   20   24   32   43   53   59   62   65   66   71 
LCS_GDT     R      82     R      82      5   11   22     3    5    6    9   10   12   13   14   16   20   25   33   43   49   58   61   63   66   67   71 
LCS_GDT     I      83     I      83      4   11   37     3    3    6    9   10   12   13   14   16   17   18   20   29   47   58   61   63   66   67   71 
LCS_GDT     V      84     V      84      4   11   37     3    3    5    7    8   12   15   17   28   39   44   48   51   56   59   61   63   66   67   71 
LCS_GDT     N      85     N      85      5    9   37     3    5    5    7    8   10   15   19   22   28   39   44   47   51   56   60   62   66   67   71 
LCS_GDT     E      86     E      86      5    9   37     3    5    5    7    8   12   19   22   27   30   31   33   36   42   46   59   62   65   66   68 
LCS_GDT     P      87     P      87      5    9   37     3    5    6    7    8    9   16   18   28   30   31   33   37   42   48   51   59   65   65   71 
LCS_GDT     S      88     S      88      5    9   37     3    5    6    7    8    9   10   16   20   24   26   30   32   38   40   48   54   65   66   71 
LCS_GDT     E      89     E      89     12   19   37     3    6   11   14   16   20   24   31   37   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     L      90     L      90     12   19   37     9   10   11   14   17   23   30   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     N      91     N      91     12   19   37     3    4   11   14   17   23   30   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     Q      92     Q      92     12   19   37     9   10   11   14   17   23   29   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     E      93     E      93     12   22   37     9   10   11   14   20   26   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     E      94     E      94     12   24   37     9   10   11   15   20   27   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     V      95     V      95     12   24   37     9   10   12   16   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     E      96     E      96     12   24   37     9   10   12   16   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     T      97     T      97     12   24   37     9   10   16   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     L      98     L      98     17   24   37     9   10   11   16   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     A      99     A      99     19   24   37     9   17   19   20   24   28   32   36   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     R     100     R     100     19   24   37    12   17   19   20   24   28   32   36   42   43   46   48   51   56   59   60   63   66   67   71 
LCS_GDT     P     101     P     101     19   24   37    12   17   19   20   24   28   32   36   42   43   46   48   51   56   59   60   63   66   67   71 
LCS_GDT     C     102     C     102     19   24   37    12   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     L     103     L     103     19   24   37    12   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     N     104     N     104     19   24   37    12   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     M     105     M     105     19   24   37    12   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     L     106     L     106     19   24   37    12   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     N     107     N     107     19   24   37    12   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     R     108     R     108     19   24   37    12   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     L     109     L     109     19   24   37    12   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     T     110     T     110     19   24   37    12   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     Y     111     Y     111     19   24   37    12   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     E     112     E     112     19   24   37     8   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     V     113     V     113     19   24   37    10   17   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     T     114     T     114     19   24   37     7   17   19   20   22   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     E     115     E     115     19   24   37     7   17   19   20   21   25   32   37   42   43   46   48   51   55   59   61   63   66   67   71 
LCS_GDT     I     116     I     116     19   24   37    11   17   19   20   22   28   32   37   42   43   46   48   51   54   59   61   63   66   67   71 
LCS_GDT     A     117     A     117     19   24   37     5   14   19   20   24   28   32   37   42   43   46   48   51   56   59   61   63   66   67   71 
LCS_GDT     L     118     L     118      5   24   37     3    4    7   15   20   22   23   32   34   40   42   45   48   53   58   60   62   65   67   71 
LCS_GDT     D     119     D     119      5   24   37     3    7   16   19   21   22   23   32   34   40   42   44   47   51   56   60   62   65   67   71 
LCS_GDT     L     120     L     120      5    7   37     3    4    5    6    6   10   15   21   25   26   29   31   36   41   45   49   51   57   67   71 
LCS_GDT     P     121     P     121      5    7   33     3    4    5    6    9   10   11   11   15   16   17   19   21   24   31   37   47   49   58   68 
LCS_GDT     G     122     G     122      5    7   30     3    4    5    6    6    7   11   12   15   16   17   18   21   23   25   29   36   40   45   54 
LCS_GDT     I     123     I     123      4    7   15     3    4    4    6    6    7    8    9   10   11   16   17   20   22   25   29   36   40   42   48 
LCS_GDT     N     124     N     124      3    7   15     3    4    4    4    5    7    8    9   10   11   13   16   17   18   19   22   25   27   30   32 
LCS_GDT     L     125     L     125      3    7   15     3    4    4    5    6    7    8    9   10   11   11   13   17   18   19   20   24   24   26   31 
LCS_GDT     E     126     E     126      3    7   15     3    3    4    5    6    7    8    9   10   11   11   13   14   16   19   22   25   27   27   29 
LCS_GDT     F     127     F     127      3    4   15     3    3    4    4    4    5    7    7    9   11   11   13   14   15   16   17   25   27   27   27 
LCS_AVERAGE  LCS_A:  12.76  (   5.95    9.26   23.07 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     17     19     20     24     28     32     37     42     43     46     48     51     56     59     61     63     66     67     71 
GDT PERCENT_CA   9.60  13.60  15.20  16.00  19.20  22.40  25.60  29.60  33.60  34.40  36.80  38.40  40.80  44.80  47.20  48.80  50.40  52.80  53.60  56.80
GDT RMS_LOCAL    0.28   0.58   0.73   0.95   1.74   1.96   2.24   2.77   2.96   3.06   3.41   3.69   4.06   4.73   4.82   5.40   5.32   5.65   5.77   6.49
GDT RMS_ALL_CA  18.49  18.37  18.42  18.22  17.22  17.35  17.23  16.78  16.89  16.84  16.61  16.45  16.22  15.94  16.00  15.78  15.88  15.64  15.61  15.42

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         42.025
LGA    M       4      M       4         36.466
LGA    N       5      N       5         34.709
LGA    L       6      L       6         28.399
LGA    K       7      K       7         25.437
LGA    R       8      R       8         21.245
LGA    E       9      E       9         20.124
LGA    Q      10      Q      10         22.178
LGA    E      11      E      11         20.135
LGA    F      12      F      12         15.665
LGA    V      13      V      13         14.198
LGA    S      14      S      14         16.146
LGA    Q      15      Q      15         15.935
LGA    Y      16      Y      16         17.778
LGA    H      17      H      17         21.747
LGA    F      18      F      18         24.487
LGA    D      19      D      19         27.792
LGA    A      20      A      20         29.866
LGA    R      21      R      21         25.600
LGA    N      22      N      22         25.179
LGA    F      23      F      23         27.098
LGA    E      24      E      24         29.310
LGA    W      25      W      25         24.954
LGA    E      26      E      26         19.375
LGA    N      27      N      27         21.510
LGA    E      28      E      28         22.164
LGA    N      29      N      29         18.717
LGA    G      30      G      30         11.725
LGA    A      31      A      31          7.815
LGA    P      32      P      32          8.367
LGA    E      33      E      33          6.413
LGA    T      34      T      34          3.600
LGA    K      35      K      35          3.336
LGA    V      36      V      36          7.064
LGA    D      37      D      37          8.883
LGA    V      38      V      38          9.064
LGA    N      39      N      39         13.535
LGA    F      40      F      40         15.733
LGA    Q      41      Q      41         18.991
LGA    L      42      L      42         22.010
LGA    L      43      L      43         23.445
LGA    Q      44      Q      44         26.363
LGA    H      45      H      45         29.236
LGA    D      46      D      46         27.600
LGA    Q      47      Q      47         27.511
LGA    E      48      E      48         26.232
LGA    N      49      N      49         25.254
LGA    Q      50      Q      50         29.707
LGA    V      51      V      51         24.738
LGA    T      52      T      52         21.264
LGA    S      53      S      53         16.877
LGA    L      54      L      54         12.496
LGA    I      55      I      55          9.020
LGA    V      56      V      56          6.210
LGA    I      57      I      57          3.242
LGA    L      58      L      58          3.111
LGA    S      59      S      59          3.803
LGA    F      60      F      60          4.253
LGA    M      61      M      61          6.932
LGA    I      62      I      62          3.967
LGA    V      63      V      63          3.641
LGA    F      64      F      64          2.970
LGA    D      65      D      65          2.920
LGA    K      66      K      66          2.194
LGA    F      67      F      67          3.578
LGA    V      68      V      68          3.488
LGA    I      69      I      69          6.467
LGA    S      70      S      70          4.387
LGA    G      71      G      71          5.532
LGA    T      72      T      72          9.322
LGA    I      73      I      73          7.371
LGA    S      74      S      74         10.929
LGA    Q      75      Q      75         10.696
LGA    V      76      V      76         12.847
LGA    N      77      N      77         13.557
LGA    H      78      H      78         14.122
LGA    I      79      I      79         12.838
LGA    D      80      D      80         16.893
LGA    G      81      G      81         16.373
LGA    R      82      R      82         11.734
LGA    I      83      I      83         11.208
LGA    V      84      V      84          8.191
LGA    N      85      N      85         11.151
LGA    E      86      E      86         13.303
LGA    P      87      P      87         10.578
LGA    S      88      S      88         11.730
LGA    E      89      E      89          5.874
LGA    L      90      L      90          3.575
LGA    N      91      N      91          3.726
LGA    Q      92      Q      92          3.803
LGA    E      93      E      93          2.225
LGA    E      94      E      94          0.678
LGA    V      95      V      95          1.062
LGA    E      96      E      96          2.957
LGA    T      97      T      97          2.486
LGA    L      98      L      98          3.045
LGA    A      99      A      99          4.385
LGA    R     100      R     100          4.851
LGA    P     101      P     101          4.476
LGA    C     102      C     102          3.657
LGA    L     103      L     103          3.261
LGA    N     104      N     104          2.933
LGA    M     105      M     105          2.452
LGA    L     106      L     106          1.530
LGA    N     107      N     107          1.420
LGA    R     108      R     108          1.100
LGA    L     109      L     109          1.297
LGA    T     110      T     110          0.362
LGA    Y     111      Y     111          0.888
LGA    E     112      E     112          2.020
LGA    V     113      V     113          0.774
LGA    T     114      T     114          2.202
LGA    E     115      E     115          3.817
LGA    I     116      I     116          3.521
LGA    A     117      A     117          2.222
LGA    L     118      L     118          7.614
LGA    D     119      D     119          8.522
LGA    L     120      L     120         14.836
LGA    P     121      P     121         18.547
LGA    G     122      G     122         19.869
LGA    I     123      I     123         20.756
LGA    N     124      N     124         24.269
LGA    L     125      L     125         29.160
LGA    E     126      E     126         32.845
LGA    F     127      F     127         32.915

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     37    2.77    27.000    22.915     1.291

LGA_LOCAL      RMSD =  2.767  Number of atoms =   37  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.529  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 13.741  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.872674 * X  +  -0.127712 * Y  +   0.471307 * Z  +  10.314411
  Y_new =   0.033828 * X  +   0.947061 * Y  +   0.319267 * Z  +  30.160158
  Z_new =  -0.487130 * X  +   0.294559 * Y  +  -0.822155 * Z  +   5.695264 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.797563   -0.344030  [ DEG:   160.2886    -19.7114 ]
  Theta =   0.508801    2.632792  [ DEG:    29.1521    150.8479 ]
  Phi   =   3.102848   -0.038745  [ DEG:   177.7801     -2.2199 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS393_1                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS393_1.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   37   2.77  22.915    13.74
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS393_1
PFRMAT TS
TARGET T0383
MODEL 1
PARENT N/A
ATOM      1  CA  SER     1       6.397   7.523   3.898  1.00 25.00           C
ATOM      2  CA  ASN     2       3.884   8.406   1.179  1.00 25.00           C
ATOM      3  CA  ALA     3       4.226  12.156   1.862  1.00 25.00           C
ATOM      4  CA  MET     4       3.605  15.817   2.799  1.00 25.00           C
ATOM      5  CA  ASN     5       4.705  19.228   1.562  1.00 25.00           C
ATOM      6  CA  LEU     6       7.076  22.177   1.853  1.00 25.00           C
ATOM      7  CA  LYS     7       5.938  25.296   3.636  1.00 25.00           C
ATOM      8  CA  ARG     8       5.047  28.927   4.269  1.00 25.00           C
ATOM      9  CA  GLU     9       2.044  27.876   6.449  1.00 25.00           C
ATOM     10  CA  GLN    10       0.335  28.981   3.200  1.00 25.00           C
ATOM     11  CA  GLU    11      -2.045  31.363   5.024  1.00 25.00           C
ATOM     12  CA  PHE    12       0.929  33.073   6.725  1.00 25.00           C
ATOM     13  CA  VAL    13       2.676  33.458   3.339  1.00 25.00           C
ATOM     14  CA  SER    14      -0.505  34.974   1.842  1.00 25.00           C
ATOM     15  CA  GLN    15      -0.749  37.424   4.776  1.00 25.00           C
ATOM     16  CA  TYR    16      -3.460  36.011   6.978  1.00 25.00           C
ATOM     17  CA  HIS    17      -6.622  37.665   8.326  1.00 25.00           C
ATOM     18  CA  PHE    18      -5.313  40.847   6.723  1.00 25.00           C
ATOM     19  CA  ASP    19      -7.591  43.912   6.982  1.00 25.00           C
ATOM     20  CA  ALA    20      -4.569  46.117   7.027  1.00 25.00           C
ATOM     21  CA  ARG    21      -3.394  46.547   3.489  1.00 25.00           C
ATOM     22  CA  ASN    22      -0.227  44.497   3.824  1.00 25.00           C
ATOM     23  CA  PHE    23       3.187  45.278   5.302  1.00 25.00           C
ATOM     24  CA  GLU    24       4.895  47.348   2.569  1.00 25.00           C
ATOM     25  CA  TRP    25       6.774  44.240   1.355  1.00 25.00           C
ATOM     26  CA  GLU    26       3.494  42.264   1.257  1.00 25.00           C
ATOM     27  CA  ASN    27       1.834  45.075  -0.748  1.00 25.00           C
ATOM     28  CA  GLU    28       4.771  45.089  -3.206  1.00 25.00           C
ATOM     29  CA  ASN    29       2.298  47.108  -5.295  1.00 25.00           C
ATOM     30  CA  GLY    30      -0.024  44.258  -6.208  1.00 25.00           C
ATOM     31  CA  ALA    31       1.789  41.084  -7.253  1.00 25.00           C
ATOM     32  CA  PRO    32       5.513  40.730  -6.792  1.00 25.00           C
ATOM     33  CA  GLU    33       8.059  39.672  -4.197  1.00 25.00           C
ATOM     34  CA  THR    34       8.929  36.547  -2.265  1.00 25.00           C
ATOM     35  CA  LYS    35       6.709  35.053   0.487  1.00 25.00           C
ATOM     36  CA  VAL    36       6.036  31.308  -0.159  1.00 25.00           C
ATOM     37  CA  ASP    37       8.641  30.758   2.613  1.00 25.00           C
ATOM     38  CA  VAL    38       9.924  30.212   6.184  1.00 25.00           C
ATOM     39  CA  ASN    39      12.748  28.019   7.419  1.00 25.00           C
ATOM     40  CA  PHE    40      15.395  27.066   9.990  1.00 25.00           C
ATOM     41  CA  GLN    41      16.091  23.370  10.701  1.00 25.00           C
ATOM     42  CA  LEU    42      19.361  24.056  12.510  1.00 25.00           C
ATOM     43  CA  LEU    43      20.904  20.612  13.220  1.00 25.00           C
ATOM     44  CA  GLN    44      21.360  17.445  15.304  1.00 25.00           C
ATOM     45  CA  HIS    45      24.562  18.704  16.919  1.00 25.00           C
ATOM     46  CA  ASP    46      24.479  17.510  20.480  1.00 25.00           C
ATOM     47  CA  GLN    47      23.748  20.551  22.689  1.00 25.00           C
ATOM     48  CA  GLU    48      20.470  21.162  20.804  1.00 25.00           C
ATOM     49  CA  ASN    49      19.488  17.491  21.272  1.00 25.00           C
ATOM     50  CA  GLN    50      18.905  14.577  18.956  1.00 25.00           C
ATOM     51  CA  VAL    51      15.183  15.333  19.178  1.00 25.00           C
ATOM     52  CA  THR    52      14.923  18.902  17.883  1.00 25.00           C
ATOM     53  CA  SER    53      14.646  21.664  15.355  1.00 25.00           C
ATOM     54  CA  LEU    54      12.986  25.128  15.159  1.00 25.00           C
ATOM     55  CA  ILE    55      10.065  25.976  12.831  1.00 25.00           C
ATOM     56  CA  VAL    56      10.597  29.666  11.878  1.00 25.00           C
ATOM     57  CA  ILE    57       8.864  32.704  10.457  1.00 25.00           C
ATOM     58  CA  LEU    58       5.919  32.633   7.965  1.00 25.00           C
ATOM     59  CA  SER    59       6.840  36.091   6.583  1.00 25.00           C
ATOM     60  CA  PHE    60       9.930  35.220   4.650  1.00 25.00           C
ATOM     61  CA  MET    61      11.902  34.719   1.386  1.00 25.00           C
ATOM     62  CA  ILE    62      11.817  32.330  -1.572  1.00 25.00           C
ATOM     63  CA  VAL    63       9.130  31.387  -4.094  1.00 25.00           C
ATOM     64  CA  PHE    64       7.926  31.302  -7.642  1.00 25.00           C
ATOM     65  CA  ASP    65       7.169  32.503 -11.150  1.00 25.00           C
ATOM     66  CA  LYS    66       6.888  29.490 -13.499  1.00 25.00           C
ATOM     67  CA  PHE    67       4.984  28.249 -10.426  1.00 25.00           C
ATOM     68  CA  VAL    68       4.155  27.573  -6.716  1.00 25.00           C
ATOM     69  CA  ILE    69       2.503  28.609  -3.440  1.00 25.00           C
ATOM     70  CA  SER    70       3.309  25.823  -0.978  1.00 25.00           C
ATOM     71  CA  GLY    71       7.058  26.284  -1.194  1.00 25.00           C
ATOM     72  CA  THR    72      10.635  27.502  -0.648  1.00 25.00           C
ATOM     73  CA  ILE    73      11.006  26.293   2.924  1.00 25.00           C
ATOM     74  CA  SER    74      11.976  23.096   4.778  1.00 25.00           C
ATOM     75  CA  GLN    75       9.855  23.712   7.933  1.00 25.00           C
ATOM     76  CA  VAL    76       7.129  26.291   8.744  1.00 25.00           C
ATOM     77  CA  ASN    77       5.393  28.216  11.542  1.00 25.00           C
ATOM     78  CA  HIS    78       5.492  31.227  13.926  1.00 25.00           C
ATOM     79  CA  ILE    79       7.617  30.704  17.038  1.00 25.00           C
ATOM     80  CA  ASP    80       4.392  30.419  19.049  1.00 25.00           C
ATOM     81  CA  GLY    81       5.010  31.454  22.627  1.00 25.00           C
ATOM     82  CA  ARG    82       5.696  35.153  22.675  1.00 25.00           C
ATOM     83  CA  ILE    83       8.695  35.578  20.397  1.00 25.00           C
ATOM     84  CA  VAL    84      11.472  36.479  22.783  1.00 25.00           C
ATOM     85  CA  ASN    85      12.820  37.223  26.305  1.00 25.00           C
ATOM     86  CA  GLU    86      14.361  40.401  27.805  1.00 25.00           C
ATOM     87  CA  PRO    87      11.146  42.171  28.807  1.00 25.00           C
ATOM     88  CA  SER    88      11.429  45.536  26.994  1.00 25.00           C
ATOM     89  CA  GLU    89       8.645  44.066  24.847  1.00 25.00           C
ATOM     90  CA  LEU    90      10.254  42.972  21.611  1.00 25.00           C
ATOM     91  CA  ASN    91       9.025  46.006  19.576  1.00 25.00           C
ATOM     92  CA  GLN    92      11.176  47.506  16.831  1.00 25.00           C
ATOM     93  CA  GLU    93      14.913  46.795  16.393  1.00 25.00           C
ATOM     94  CA  GLU    94      14.440  43.283  17.845  1.00 25.00           C
ATOM     95  CA  VAL    95      11.520  42.658  15.447  1.00 25.00           C
ATOM     96  CA  GLU    96      13.661  43.831  12.497  1.00 25.00           C
ATOM     97  CA  THR    97      16.490  41.492  13.588  1.00 25.00           C
ATOM     98  CA  LEU    98      14.020  38.575  13.829  1.00 25.00           C
ATOM     99  CA  ALA    99      12.702  39.371  10.322  1.00 25.00           C
ATOM    100  CA  ARG   100      16.284  39.455   8.968  1.00 25.00           C
ATOM    101  CA  PRO   101      17.011  36.074  10.614  1.00 25.00           C
ATOM    102  CA  CYS   102      13.830  34.607   9.064  1.00 25.00           C
ATOM    103  CA  LEU   103      14.860  35.941   5.626  1.00 25.00           C
ATOM    104  CA  ASN   104      18.337  34.388   6.038  1.00 25.00           C
ATOM    105  CA  MET   105      16.752  31.037   7.003  1.00 25.00           C
ATOM    106  CA  LEU   106      14.479  31.198   3.925  1.00 25.00           C
ATOM    107  CA  ASN   107      17.507  31.935   1.697  1.00 25.00           C
ATOM    108  CA  ARG   108      19.381  28.963   3.218  1.00 25.00           C
ATOM    109  CA  LEU   109      16.357  26.701   2.585  1.00 25.00           C
ATOM    110  CA  THR   110      16.186  27.903  -1.047  1.00 25.00           C
ATOM    111  CA  TYR   111      19.924  27.191  -1.484  1.00 25.00           C
ATOM    112  CA  GLU   112      19.450  23.679  -0.031  1.00 25.00           C
ATOM    113  CA  VAL   113      16.530  23.054  -2.430  1.00 25.00           C
ATOM    114  CA  THR   114      18.671  24.227  -5.380  1.00 25.00           C
ATOM    115  CA  GLU   115      21.500  21.888  -4.289  1.00 25.00           C
ATOM    116  CA  ILE   116      19.030  18.971  -4.048  1.00 25.00           C
ATOM    117  CA  ALA   117      17.712  19.767  -7.555  1.00 25.00           C
ATOM    118  CA  LEU   118      20.002  16.974  -8.763  1.00 25.00           C
ATOM    119  CA  ASP   119      22.873  16.430  -6.251  1.00 25.00           C
ATOM    120  CA  LEU   120      23.161  12.912  -4.815  1.00 25.00           C
ATOM    121  CA  PRO   121      21.840   9.664  -6.246  1.00 25.00           C
ATOM    122  CA  GLY   122      19.564   8.670  -9.107  1.00 25.00           C
ATOM    123  CA  ILE   123      17.001  11.164 -10.367  1.00 25.00           C
ATOM    124  CA  ASN   124      18.501  11.881 -13.764  1.00 25.00           C
ATOM    125  CA  LEU   125      16.033  10.288 -16.196  1.00 25.00           C
ATOM    126  CA  GLU   126      12.692  11.302 -17.637  1.00 25.00           C
ATOM    127  CA  PHE   127      10.519  11.252 -14.550  1.00 25.00           C
TER
END
