
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS168_5
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS168_5.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    39        83 - 121         4.69    21.94
  LONGEST_CONTINUOUS_SEGMENT:    39        84 - 122         4.67    21.63
  LCS_AVERAGE:     21.27

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        94 - 120         1.92    21.34
  LCS_AVERAGE:      9.83

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        99 - 119         0.88    21.12
  LCS_AVERAGE:      6.39

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      4    8   17     3    4    4    6    7    8    9   10   14   15   20   21   25   28   32   34   39   42   47   51 
LCS_GDT     M       4     M       4      4    8   17     3    4    5    6    7    8    9   10   12   15   20   21   25   28   32   34   39   42   47   51 
LCS_GDT     N       5     N       5      4    8   17     3    4    5    6    7    8   10   11   13   15   18   21   25   28   32   34   37   41   43   44 
LCS_GDT     L       6     L       6      5    8   17     3    4    5    6    8    9   10   11   13   15   19   21   25   28   32   34   37   41   43   44 
LCS_GDT     K       7     K       7      5    8   17     3    4    5    6    8    9   10   11   13   15   19   21   24   28   32   33   37   39   41   43 
LCS_GDT     R       8     R       8      5    8   17     3    4    5    6    8    9   10   11   13   15   19   21   25   28   32   36   38   41   43   48 
LCS_GDT     E       9     E       9      5    8   17     3    4    5    6    8    9   10   11   13   15   19   21   25   28   32   36   39   42   46   49 
LCS_GDT     Q      10     Q      10      5    8   17     3    4    5   11   13   14   16   22   25   27   31   34   38   42   44   46   48   51   53   55 
LCS_GDT     E      11     E      11      4    8   17     3    3    4   13   16   18   20   28   33   36   39   41   43   45   47   49   53   55   58   61 
LCS_GDT     F      12     F      12      4    6   17     3    4    8   21   25   28   29   31   33   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     V      13     V      13      3    6   17     3    5   13   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     S      14     S      14      3    6   17     3    3    4    6   14   24   28   32   35   36   38   39   43   45   47   53   54   57   58   61 
LCS_GDT     Q      15     Q      15      3    6   17     3    3    6    9   16   18   23   26   31   33   36   38   42   44   46   53   54   57   58   61 
LCS_GDT     Y      16     Y      16      3    6   17     0    4    4    6    8   14   14   20   22   27   33   36   39   44   46   53   54   57   58   61 
LCS_GDT     H      17     H      17      3    6   17     3    3    4    5    8   11   14   20   22   26   33   35   38   42   44   47   54   56   58   60 
LCS_GDT     F      18     F      18      3    6   17     3    3    4    5    7   11   14   20   22   24   27   30   32   34   39   41   44   48   50   55 
LCS_GDT     D      19     D      19      5    7   17     3    5    5    6    7    9   10   20   21   23   26   28   31   34   39   41   44   48   50   55 
LCS_GDT     A      20     A      20      5    7   18     4    5    5    6    8    8    9   10   15   17   22   27   31   34   39   41   44   48   50   55 
LCS_GDT     R      21     R      21      5    7   18     4    5    5    6    8    8    9   10   11   17   22   27   31   34   39   41   44   48   50   55 
LCS_GDT     N      22     N      22      5    7   18     4    5    5    6    6    8    9   10   13   15   19   23   28   34   39   41   44   48   50   55 
LCS_GDT     F      23     F      23      6    7   18     5    6    6    6    6    8    9   10   11   12   16   20   25   28   33   36   43   46   49   55 
LCS_GDT     E      24     E      24      6    7   18     5    6    6    6    6    8    9   10   10   12   14   20   25   28   33   37   43   47   50   55 
LCS_GDT     W      25     W      25      6    7   20     5    6    6    6    6    8    9   10   10   12   14   18   22   28   31   37   43   47   50   55 
LCS_GDT     E      26     E      26      6    7   20     5    6    6    6    6    8    8   10   13   17   21   22   26   29   33   38   43   49   50   55 
LCS_GDT     N      27     N      27      6    7   20     5    6    6    6    6    8    8   10   12   17   19   22   26   29   31   38   43   47   50   55 
LCS_GDT     E      28     E      28      6    7   20     5    6    6    6    6    8    9   10   11   18   21   23   29   31   38   42   44   50   51   55 
LCS_GDT     N      29     N      29      4    5   20     3    3    4    6    7   10   14   16   17   24   29   34   37   42   44   46   49   50   52   56 
LCS_GDT     G      30     G      30      4    5   20     3    3    4    6    7   11   14   16   17   21   29   34   37   42   44   46   49   50   52   55 
LCS_GDT     A      31     A      31      4    7   20     3    3    4    6    7   11   14   17   21   27   31   34   37   42   44   46   49   50   53   58 
LCS_GDT     P      32     P      32      4    7   20     3    4    4    5    7   11   12   16   17   21   31   34   37   42   44   46   49   52   55   58 
LCS_GDT     E      33     E      33      3    7   20     3    4    4    6    7   11   17   21   24   32   33   38   42   44   46   53   54   57   58   60 
LCS_GDT     T      34     T      34      4    7   20     1    4    7   10   14   19   23   26   31   32   34   38   42   44   46   53   54   57   58   61 
LCS_GDT     K      35     K      35      4    9   20     4    5    7    9   13   16   22   26   30   34   36   38   42   44   46   53   54   57   58   61 
LCS_GDT     V      36     V      36      5    9   20     4    5    7    8   13   16   22   26   30   34   36   38   41   44   46   53   54   57   58   61 
LCS_GDT     D      37     D      37      5    9   20     3    4    5    7    9   18   28   31   32   34   38   39   43   45   47   53   54   57   58   61 
LCS_GDT     V      38     V      38      5    9   23     3    4    5    7    9   10   12   15   20   34   38   39   43   43   47   49   53   55   58   61 
LCS_GDT     N      39     N      39      5    9   23     3    4    5    7    9   10   12   16   17   23   25   31   32   34   41   47   47   50   53   58 
LCS_GDT     F      40     F      40      5    9   23     3    4    6    7   10   10   13   16   21   23   27   30   32   33   39   41   44   48   50   55 
LCS_GDT     Q      41     Q      41      4    9   23     3    4    5    7   10   10   13   19   22   24   27   30   32   34   39   41   44   48   50   55 
LCS_GDT     L      42     L      42      4    9   23     3    4    5    7   10   11   14   20   22   24   28   30   32   33   36   38   43   46   49   54 
LCS_GDT     L      43     L      43      4    9   23     3    4    5    7   10   10   12   20   22   24   28   30   32   34   39   41   44   48   50   55 
LCS_GDT     Q      44     Q      44      4    7   23     3    4    5    7   10   10   14   20   22   24   28   30   32   34   39   41   44   48   50   55 
LCS_GDT     H      45     H      45      4    7   23     3    4    4    5    7   10   14   20   22   24   28   30   32   34   39   41   44   48   50   55 
LCS_GDT     D      46     D      46      4    7   23     4    4    4    5    7    8   14   20   22   24   28   29   32   34   39   41   44   48   50   55 
LCS_GDT     Q      47     Q      47      4    4   23     4    4    4    4    6    8    8   10   13   23   28   30   32   33   36   38   42   45   49   53 
LCS_GDT     E      48     E      48      4    7   23     4    4    4    5    5    6    8   10   19   23   28   30   32   33   36   38   42   43   46   48 
LCS_GDT     N      49     N      49      5    7   23     4    4    5    6    8   11   14   20   22   24   28   30   32   33   36   38   43   47   49   53 
LCS_GDT     Q      50     Q      50      5   10   23     3    4    5    6   10   11   14   20   22   24   28   30   32   34   36   41   44   48   50   55 
LCS_GDT     V      51     V      51      5   10   23     3    4    5    6    8   11   14   20   22   24   28   30   32   34   36   39   44   48   50   55 
LCS_GDT     T      52     T      52      5   10   23     3    4    6    9   10   11   14   20   22   24   28   30   32   34   39   41   44   48   50   55 
LCS_GDT     S      53     S      53      5   10   23     3    4    6    9   10   11   13   20   22   24   28   30   32   34   39   41   44   48   50   55 
LCS_GDT     L      54     L      54      4   10   23     3    4    6    9   10   11   14   20   22   24   28   30   32   34   39   41   44   48   50   55 
LCS_GDT     I      55     I      55      4   10   23     3    3    6    9   10   11   14   20   22   24   28   30   33   37   40   42   46   50   53   58 
LCS_GDT     V      56     V      56      4   10   23     1    3    6    9   10   11   13   17   24   26   32   36   39   42   45   47   49   53   58   61 
LCS_GDT     I      57     I      57      4   10   23     0    3    6   10   19   24   27   29   33   36   39   41   43   45   47   49   53   55   58   61 
LCS_GDT     L      58     L      58      4   10   23     1    3    6    9   17   25   29   31   33   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     S      59     S      59      4   10   23     1    3    7    9   10   20   27   32   35   36   37   39   41   45   47   53   54   57   58   61 
LCS_GDT     F      60     F      60      6    7   23     3    5    7    9   16   18   23   26   31   32   35   38   42   44   46   53   54   57   58   61 
LCS_GDT     M      61     M      61      6    7   23     3    5    6    8   16   18   23   26   31   32   35   38   42   44   46   53   54   57   58   61 
LCS_GDT     I      62     I      62      6    8   22     3    5    7   10   14   19   23   26   31   32   34   38   42   44   46   53   54   57   58   61 
LCS_GDT     V      63     V      63      6    8   22     3    5    6    9   14   19   23   26   31   32   34   38   42   44   46   53   54   57   58   61 
LCS_GDT     F      64     F      64      6    8   22     2    5    7   10   14   19   23   26   30   32   34   38   42   44   46   53   54   57   58   61 
LCS_GDT     D      65     D      65      6    8   22     2    5    7   10   14   19   23   26   30   32   34   36   42   44   46   53   54   57   58   61 
LCS_GDT     K      66     K      66      5    8   22     3    5    7   10   14   19   22   26   30   32   34   36   42   44   46   53   54   57   58   61 
LCS_GDT     F      67     F      67      5    8   22     3    5    6    9   13   19   23   26   31   32   34   38   42   44   46   53   54   57   58   61 
LCS_GDT     V      68     V      68      5    8   22     3    4    6    9   13   13   21   26   31   32   36   38   42   44   46   53   54   57   58   61 
LCS_GDT     I      69     I      69      4    8   22     3    4    4    8   12   18   25   31   33   34   38   39   43   45   47   53   54   57   58   61 
LCS_GDT     S      70     S      70      4    7   22     3    4    4    5    6   25   28   31   33   35   38   39   43   45   47   50   54   57   58   61 
LCS_GDT     G      71     G      71      4    7   22     3    4    4    6    7   24   29   30   33   36   39   41   43   45   47   49   51   53   57   60 
LCS_GDT     T      72     T      72      5    7   22     3    4    5    6    7   10   21   24   33   36   39   41   43   44   47   49   51   53   57   58 
LCS_GDT     I      73     I      73      5    7   22     3    4    5    6    7   16   25   29   33   36   39   41   43   45   47   49   53   55   58   61 
LCS_GDT     S      74     S      74      5    7   22     3    4    6   13   14   18   25   26   32   36   39   41   43   44   46   49   53   55   58   61 
LCS_GDT     Q      75     Q      75      5    7   21     3   10   12   13   14   18   21   26   33   36   39   41   43   45   47   49   53   55   58   61 
LCS_GDT     V      76     V      76      5    7   17     3    4    5    6    7   10   21   23   30   35   36   39   43   43   46   49   51   55   58   61 
LCS_GDT     N      77     N      77      5    7   25     3    4    5    6    9   10   13   15   24   26   31   34   43   43   46   48   53   55   58   61 
LCS_GDT     H      78     H      78      5    7   25     3    4    6    7    9   11   13   14   16   23   25   29   33   37   40   47   49   52   54   58 
LCS_GDT     I      79     I      79      5    7   25     3    4    5    6    9   10   12   13   15   18   22   28   31   36   39   44   49   52   54   58 
LCS_GDT     D      80     D      80      5    7   25     3    4    6    7    9   10   12   13   15   17   22   27   30   36   39   39   49   52   54   55 
LCS_GDT     G      81     G      81      4    7   25     3    5    5    6    8   10   12   13   15   17   22   27   30   36   39   39   43   47   54   55 
LCS_GDT     R      82     R      82      4    7   25     3    5    5    6    8   10   12   13   15   23   25   31   37   41   44   47   50   52   55   61 
LCS_GDT     I      83     I      83      4    7   39     3    5    5    5    7    8   12   13   14   16   19   27   43   43   46   48   53   55   58   61 
LCS_GDT     V      84     V      84      4    7   39     3    5    5    6    8   24   29   31   33   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     N      85     N      85      3    6   39     3    3    3   16   22   27   29   31   33   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     E      86     E      86      3    6   39     1    3    3    5   20   28   29   31   33   36   39   41   42   45   47   53   54   57   58   61 
LCS_GDT     P      87     P      87      3    7   39     0    3    5    6    8    9   11   13   15   16   19   20   34   43   45   53   54   57   58   60 
LCS_GDT     S      88     S      88      5   16   39     3    5    5    6    8   10   13   15   21   27   34   38   42   44   45   48   54   57   58   59 
LCS_GDT     E      89     E      89     12   19   39     4   10   12   14   17   21   27   32   35   36   37   39   42   44   46   49   54   57   58   59 
LCS_GDT     L      90     L      90     12   19   39     3    5   11   14   18   23   28   32   35   36   37   39   42   45   47   53   54   57   58   61 
LCS_GDT     N      91     N      91     12   19   39     3   10   12   14   17   21   27   30   35   36   37   39   42   44   46   48   51   53   57   58 
LCS_GDT     Q      92     Q      92     12   19   39     8   10   12   14   17   21   27   31   35   36   37   39   42   44   46   48   51   53   57   58 
LCS_GDT     E      93     E      93     12   22   39     8   10   12   14   18   25   28   32   35   36   39   41   42   44   46   48   51   53   57   58 
LCS_GDT     E      94     E      94     12   27   39     8   10   12   14   20   25   29   32   35   36   39   41   42   45   47   49   51   57   58   59 
LCS_GDT     V      95     V      95     12   27   39     8   10   12   15   23   27   29   32   35   36   39   41   42   45   47   53   54   57   58   61 
LCS_GDT     E      96     E      96     12   27   39     8   10   12   17   24   28   29   32   35   36   39   41   42   45   47   53   54   57   58   60 
LCS_GDT     T      97     T      97     12   27   39     8   10   18   22   25   28   29   32   35   36   39   41   42   45   47   53   54   57   58   61 
LCS_GDT     L      98     L      98     17   27   39     8   10   13   22   25   28   29   32   35   36   39   41   42   45   47   53   54   57   58   61 
LCS_GDT     A      99     A      99     21   27   39    10   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     R     100     R     100     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     P     101     P     101     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     C     102     C     102     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     L     103     L     103     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     N     104     N     104     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     M     105     M     105     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     L     106     L     106     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     N     107     N     107     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     R     108     R     108     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     L     109     L     109     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     T     110     T     110     21   27   39    11   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     Y     111     Y     111     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     E     112     E     112     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     V     113     V     113     21   27   39     8   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     T     114     T     114     21   27   39     7   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     E     115     E     115     21   27   39     7   12   20   22   24   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     I     116     I     116     21   27   39    13   17   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     A     117     A     117     21   27   39     4   16   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     L     118     L     118     21   27   39     4   15   20   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     D     119     D     119     21   27   39     4    5   19   22   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     L     120     L     120      4   27   39     4    4    4   19   25   28   29   32   35   36   39   41   43   45   47   53   54   57   58   61 
LCS_GDT     P     121     P     121      6    7   39     3    6    6    6    7    7    8    9   12   34   38   38   43   45   47   49   53   55   58   61 
LCS_GDT     G     122     G     122      6    7   39     4    6    6    6    7    7    8    9   12   12   20   23   26   32   36   37   43   52   58   61 
LCS_GDT     I     123     I     123      6    7   38     4    6    6    6    7    7    8    9   12   12   20   23   29   32   39   46   49   54   58   61 
LCS_GDT     N     124     N     124      6    7   15     4    6    6    6    7    7    7    9    9   10   11   13   14   16   17   20   24   27   32   53 
LCS_GDT     L     125     L     125      6    7   15     4    6    6    6    7    7    8    9    9   10   11   13   14   16   17   19   24   27   29   31 
LCS_GDT     E     126     E     126      6    7   15     4    6    6    6    7    7    7    8    9   10   11   13   14   16   17   19   24   27   29   31 
LCS_GDT     F     127     F     127      3    7   15     3    3    3    4    5    7    7    8    8    9   10   13   14   16   17   18   20   21   29   29 
LCS_AVERAGE  LCS_A:  12.50  (   6.39    9.83   21.27 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     17     20     22     25     28     29     32     35     36     39     41     43     45     47     53     54     57     58     61 
GDT PERCENT_CA  10.40  13.60  16.00  17.60  20.00  22.40  23.20  25.60  28.00  28.80  31.20  32.80  34.40  36.00  37.60  42.40  43.20  45.60  46.40  48.80
GDT RMS_LOCAL    0.30   0.58   0.77   1.03   1.41   1.66   1.75   2.46   2.80   2.87   3.31   3.39   4.29   4.13   4.36   5.25   5.32   5.56   5.65   6.35
GDT RMS_ALL_CA  20.62  20.91  21.15  21.31  20.89  21.10  21.08  21.05  21.35  21.38  21.65  21.61  19.47  20.47  20.48  18.28  18.61  18.70  18.67  17.63

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         44.109
LGA    M       4      M       4         38.939
LGA    N       5      N       5         38.061
LGA    L       6      L       6         31.720
LGA    K       7      K       7         30.547
LGA    R       8      R       8         23.946
LGA    E       9      E       9         20.600
LGA    Q      10      Q      10         14.453
LGA    E      11      E      11          7.870
LGA    F      12      F      12          4.779
LGA    V      13      V      13          3.185
LGA    S      14      S      14          3.556
LGA    Q      15      Q      15          8.853
LGA    Y      16      Y      16         11.579
LGA    H      17      H      17         16.885
LGA    F      18      F      18         22.656
LGA    D      19      D      19         29.401
LGA    A      20      A      20         33.053
LGA    R      21      R      21         33.592
LGA    N      22      N      22         31.742
LGA    F      23      F      23         33.303
LGA    E      24      E      24         34.186
LGA    W      25      W      25         26.951
LGA    E      26      E      26         28.169
LGA    N      27      N      27         34.554
LGA    E      28      E      28         30.821
LGA    N      29      N      29         30.056
LGA    G      30      G      30         28.319
LGA    A      31      A      31         24.514
LGA    P      32      P      32         19.379
LGA    E      33      E      33         16.070
LGA    T      34      T      34         15.146
LGA    K      35      K      35         11.335
LGA    V      36      V      36          8.424
LGA    D      37      D      37          7.800
LGA    V      38      V      38         11.269
LGA    N      39      N      39         15.386
LGA    F      40      F      40         19.614
LGA    Q      41      Q      41         25.527
LGA    L      42      L      42         31.211
LGA    L      43      L      43         35.248
LGA    Q      44      Q      44         41.380
LGA    H      45      H      45         44.948
LGA    D      46      D      46         49.107
LGA    Q      47      Q      47         48.508
LGA    E      48      E      48         48.272
LGA    N      49      N      49         48.059
LGA    Q      50      Q      50         43.561
LGA    V      51      V      51         37.502
LGA    T      52      T      52         33.436
LGA    S      53      S      53         30.055
LGA    L      54      L      54         23.727
LGA    I      55      I      55         17.653
LGA    V      56      V      56         15.805
LGA    I      57      I      57         10.284
LGA    L      58      L      58          5.386
LGA    S      59      S      59          3.704
LGA    F      60      F      60          6.942
LGA    M      61      M      61          7.920
LGA    I      62      I      62         12.643
LGA    V      63      V      63         14.693
LGA    F      64      F      64         17.734
LGA    D      65      D      65         21.120
LGA    K      66      K      66         20.447
LGA    F      67      F      67         15.605
LGA    V      68      V      68         12.194
LGA    I      69      I      69          6.484
LGA    S      70      S      70          5.702
LGA    G      71      G      71          7.331
LGA    T      72      T      72         10.000
LGA    I      73      I      73          8.885
LGA    S      74      S      74         10.713
LGA    Q      75      Q      75          9.963
LGA    V      76      V      76         12.760
LGA    N      77      N      77         15.495
LGA    H      78      H      78         19.903
LGA    I      79      I      79         23.280
LGA    D      80      D      80         25.958
LGA    G      81      G      81         27.625
LGA    R      82      R      82         20.694
LGA    I      83      I      83         17.403
LGA    V      84      V      84         10.417
LGA    N      85      N      85          9.953
LGA    E      86      E      86          9.339
LGA    P      87      P      87          9.135
LGA    S      88      S      88          7.288
LGA    E      89      E      89          4.370
LGA    L      90      L      90          2.476
LGA    N      91      N      91          4.832
LGA    Q      92      Q      92          4.809
LGA    E      93      E      93          3.510
LGA    E      94      E      94          2.329
LGA    V      95      V      95          1.232
LGA    E      96      E      96          2.364
LGA    T      97      T      97          0.762
LGA    L      98      L      98          2.373
LGA    A      99      A      99          3.855
LGA    R     100      R     100          3.589
LGA    P     101      P     101          3.450
LGA    C     102      C     102          3.538
LGA    L     103      L     103          2.878
LGA    N     104      N     104          1.982
LGA    M     105      M     105          2.212
LGA    L     106      L     106          1.858
LGA    N     107      N     107          0.999
LGA    R     108      R     108          1.011
LGA    L     109      L     109          1.786
LGA    T     110      T     110          0.861
LGA    Y     111      Y     111          1.022
LGA    E     112      E     112          2.224
LGA    V     113      V     113          1.031
LGA    T     114      T     114          1.893
LGA    E     115      E     115          3.558
LGA    I     116      I     116          2.936
LGA    A     117      A     117          1.175
LGA    L     118      L     118          2.640
LGA    D     119      D     119          2.736
LGA    L     120      L     120          3.617
LGA    P     121      P     121          9.488
LGA    G     122      G     122         13.935
LGA    I     123      I     123         15.275
LGA    N     124      N     124         22.195
LGA    L     125      L     125         26.045
LGA    E     126      E     126         31.956
LGA    F     127      F     127         32.829

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     32    2.46    24.800    21.061     1.252

LGA_LOCAL      RMSD =  2.456  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.268  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 14.262  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.284826 * X  +   0.946640 * Y  +   0.150822 * Z  +   9.028607
  Y_new =   0.501819 * X  +   0.281307 * Y  +  -0.817951 * Z  +  31.764389
  Z_new =  -0.816732 * X  +  -0.157288 * Y  +  -0.555165 * Z  +   3.726789 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.865510    0.276083  [ DEG:  -164.1816     15.8184 ]
  Theta =   0.955725    2.185868  [ DEG:    54.7590    125.2410 ]
  Phi   =   2.087041   -1.054551  [ DEG:   119.5787    -60.4213 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS168_5                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS168_5.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   32   2.46  21.061    14.26
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS168_5
PFRMAT TS
TARGET T0383
MODEL 5
PARENT N/A
ATOM      1  CA  SER     1       2.069  29.972 -17.790  1.00 25.00           C
ATOM      2  CA  ASN     2      -1.392  30.336 -16.251  1.00 25.00           C
ATOM      3  CA  ALA     3      -0.869  30.319 -12.454  1.00 25.00           C
ATOM      4  CA  MET     4       1.236  29.824  -9.350  1.00 25.00           C
ATOM      5  CA  ASN     5       0.061  30.793  -5.858  1.00 25.00           C
ATOM      6  CA  LEU     6       2.901  32.037  -3.612  1.00 25.00           C
ATOM      7  CA  LYS     7       2.003  29.411  -1.018  1.00 25.00           C
ATOM      8  CA  ARG     8       4.634  28.014   1.408  1.00 25.00           C
ATOM      9  CA  GLU     9       7.970  26.307   2.135  1.00 25.00           C
ATOM     10  CA  GLN    10       9.576  27.216   5.458  1.00 25.00           C
ATOM     11  CA  GLU    11      12.867  26.543   7.298  1.00 25.00           C
ATOM     12  CA  PHE    12      11.402  28.028  10.510  1.00 25.00           C
ATOM     13  CA  VAL    13       8.294  25.820  10.143  1.00 25.00           C
ATOM     14  CA  SER    14      10.511  22.738   9.647  1.00 25.00           C
ATOM     15  CA  GLN    15      12.523  23.652  12.776  1.00 25.00           C
ATOM     16  CA  TYR    16       9.569  22.450  14.761  1.00 25.00           C
ATOM     17  CA  HIS    17      11.890  19.641  15.713  1.00 25.00           C
ATOM     18  CA  PHE    18      12.729  21.918  18.643  1.00 25.00           C
ATOM     19  CA  ASP    19      12.263  21.740  22.416  1.00 25.00           C
ATOM     20  CA  ALA    20      10.279  24.910  22.769  1.00 25.00           C
ATOM     21  CA  ARG    21       6.515  24.325  22.232  1.00 25.00           C
ATOM     22  CA  ASN    22       6.618  24.855  18.441  1.00 25.00           C
ATOM     23  CA  PHE    23       3.262  26.558  17.637  1.00 25.00           C
ATOM     24  CA  GLU    24      -0.293  25.137  17.606  1.00 25.00           C
ATOM     25  CA  TRP    25      -0.261  25.074  13.777  1.00 25.00           C
ATOM     26  CA  GLU    26       3.113  23.261  13.811  1.00 25.00           C
ATOM     27  CA  ASN    27       1.738  20.696  16.301  1.00 25.00           C
ATOM     28  CA  GLU    28      -1.330  20.144  14.074  1.00 25.00           C
ATOM     29  CA  ASN    29      -3.231  21.011  17.219  1.00 25.00           C
ATOM     30  CA  GLY    30      -4.963  23.874  15.296  1.00 25.00           C
ATOM     31  CA  ALA    31      -5.133  24.058  11.468  1.00 25.00           C
ATOM     32  CA  PRO    32      -4.366  27.681  10.895  1.00 25.00           C
ATOM     33  CA  GLU    33      -4.036  29.091   7.330  1.00 25.00           C
ATOM     34  CA  THR    34      -0.792  27.210   6.696  1.00 25.00           C
ATOM     35  CA  LYS    35      -1.047  28.179   3.025  1.00 25.00           C
ATOM     36  CA  VAL    36       1.025  31.221   3.718  1.00 25.00           C
ATOM     37  CA  ASP    37       2.039  34.161   1.559  1.00 25.00           C
ATOM     38  CA  VAL    38       5.592  33.150   0.539  1.00 25.00           C
ATOM     39  CA  ASN    39       8.402  35.041  -1.231  1.00 25.00           C
ATOM     40  CA  PHE    40      12.232  35.361  -0.868  1.00 25.00           C
ATOM     41  CA  GLN    41      11.850  37.460  -4.027  1.00 25.00           C
ATOM     42  CA  LEU    42      15.128  39.026  -5.166  1.00 25.00           C
ATOM     43  CA  LEU    43      13.057  41.518  -7.118  1.00 25.00           C
ATOM     44  CA  GLN    44      12.527  43.624 -10.260  1.00 25.00           C
ATOM     45  CA  HIS    45      11.143  46.485 -12.323  1.00 25.00           C
ATOM     46  CA  ASP    46       7.904  48.196 -13.412  1.00 25.00           C
ATOM     47  CA  GLN    47       4.825  47.256 -11.339  1.00 25.00           C
ATOM     48  CA  GLU    48       6.865  47.578  -8.115  1.00 25.00           C
ATOM     49  CA  ASN    49       8.124  51.019  -9.226  1.00 25.00           C
ATOM     50  CA  GLN    50      11.607  49.601  -8.393  1.00 25.00           C
ATOM     51  CA  VAL    51      10.962  48.079  -4.928  1.00 25.00           C
ATOM     52  CA  THR    52      14.113  46.331  -3.678  1.00 25.00           C
ATOM     53  CA  SER    53      13.443  42.858  -2.176  1.00 25.00           C
ATOM     54  CA  LEU    54      12.326  40.222   0.329  1.00 25.00           C
ATOM     55  CA  ILE    55      10.595  38.636   3.332  1.00 25.00           C
ATOM     56  CA  VAL    56       7.284  39.457   1.712  1.00 25.00           C
ATOM     57  CA  ILE    57       5.750  36.929   4.037  1.00 25.00           C
ATOM     58  CA  LEU    58       4.610  33.879   5.979  1.00 25.00           C
ATOM     59  CA  SER    59       2.732  32.421   8.906  1.00 25.00           C
ATOM     60  CA  PHE    60       5.691  30.066   9.592  1.00 25.00           C
ATOM     61  CA  MET    61       4.398  28.384   6.394  1.00 25.00           C
ATOM     62  CA  ILE    62       4.754  24.676   5.619  1.00 25.00           C
ATOM     63  CA  VAL    63       4.687  22.281   2.628  1.00 25.00           C
ATOM     64  CA  PHE    64       3.537  19.394   0.424  1.00 25.00           C
ATOM     65  CA  ASP    65       2.375  16.384  -1.537  1.00 25.00           C
ATOM     66  CA  LYS    66       4.184  13.035  -0.933  1.00 25.00           C
ATOM     67  CA  PHE    67       7.243  15.185  -0.269  1.00 25.00           C
ATOM     68  CA  VAL    68       8.572  18.665   0.517  1.00 25.00           C
ATOM     69  CA  ILE    69       8.166  22.143  -1.095  1.00 25.00           C
ATOM     70  CA  SER    70       4.865  23.721  -2.161  1.00 25.00           C
ATOM     71  CA  GLY    71       6.690  26.890  -3.145  1.00 25.00           C
ATOM     72  CA  THR    72       8.758  29.807  -1.886  1.00 25.00           C
ATOM     73  CA  ILE    73       9.977  30.907   1.531  1.00 25.00           C
ATOM     74  CA  SER    74       9.617  33.723   4.029  1.00 25.00           C
ATOM     75  CA  GLN    75       9.503  32.618   7.677  1.00 25.00           C
ATOM     76  CA  VAL    76       7.780  35.394   9.571  1.00 25.00           C
ATOM     77  CA  ASN    77       8.979  38.776   8.170  1.00 25.00           C
ATOM     78  CA  HIS    78       5.332  39.807   8.152  1.00 25.00           C
ATOM     79  CA  ILE    79       4.023  41.881   5.194  1.00 25.00           C
ATOM     80  CA  ASP    80       3.012  44.790   7.495  1.00 25.00           C
ATOM     81  CA  GLY    81      -0.411  45.798   8.716  1.00 25.00           C
ATOM     82  CA  ARG    82       0.944  45.920  12.298  1.00 25.00           C
ATOM     83  CA  ILE    83       4.349  44.411  12.892  1.00 25.00           C
ATOM     84  CA  VAL    84       3.391  44.412  16.555  1.00 25.00           C
ATOM     85  CA  ASN    85       2.573  47.714  18.295  1.00 25.00           C
ATOM     86  CA  GLU    86       3.125  51.370  19.316  1.00 25.00           C
ATOM     87  CA  PRO    87       3.517  50.353  22.986  1.00 25.00           C
ATOM     88  CA  SER    88       4.976  47.346  24.810  1.00 25.00           C
ATOM     89  CA  GLU    89       6.487  43.990  23.786  1.00 25.00           C
ATOM     90  CA  LEU    90       7.155  43.950  19.984  1.00 25.00           C
ATOM     91  CA  ASN    91      10.826  44.764  20.657  1.00 25.00           C
ATOM     92  CA  GLN    92      12.554  46.959  18.047  1.00 25.00           C
ATOM     93  CA  GLU    93      16.127  45.583  17.980  1.00 25.00           C
ATOM     94  CA  GLU    94      14.834  42.109  18.944  1.00 25.00           C
ATOM     95  CA  VAL    95      12.213  42.284  16.157  1.00 25.00           C
ATOM     96  CA  GLU    96      14.920  43.290  13.641  1.00 25.00           C
ATOM     97  CA  THR    97      17.104  40.358  14.782  1.00 25.00           C
ATOM     98  CA  LEU    98      14.142  37.964  14.382  1.00 25.00           C
ATOM     99  CA  ALA    99      13.490  39.319  10.861  1.00 25.00           C
ATOM    100  CA  ARG   100      17.182  38.836   9.964  1.00 25.00           C
ATOM    101  CA  PRO   101      17.056  35.241  11.278  1.00 25.00           C
ATOM    102  CA  CYS   102      13.911  34.565   9.198  1.00 25.00           C
ATOM    103  CA  LEU   103      15.633  35.988   6.087  1.00 25.00           C
ATOM    104  CA  ASN   104      18.683  33.762   6.728  1.00 25.00           C
ATOM    105  CA  MET   105      16.405  30.706   7.096  1.00 25.00           C
ATOM    106  CA  LEU   106      14.650  31.586   3.808  1.00 25.00           C
ATOM    107  CA  ASN   107      18.040  31.929   2.061  1.00 25.00           C
ATOM    108  CA  ARG   108      19.122  28.522   3.437  1.00 25.00           C
ATOM    109  CA  LEU   109      15.859  26.954   2.186  1.00 25.00           C
ATOM    110  CA  THR   110      16.415  28.499  -1.274  1.00 25.00           C
ATOM    111  CA  TYR   111      19.988  27.123  -1.342  1.00 25.00           C
ATOM    112  CA  GLU   112      18.695  23.650  -0.378  1.00 25.00           C
ATOM    113  CA  VAL   113      16.073  23.824  -3.164  1.00 25.00           C
ATOM    114  CA  THR   114      18.780  24.829  -5.681  1.00 25.00           C
ATOM    115  CA  GLU   115      20.965  21.898  -4.539  1.00 25.00           C
ATOM    116  CA  ILE   116      18.002  19.504  -4.939  1.00 25.00           C
ATOM    117  CA  ALA   117      17.350  20.860  -8.461  1.00 25.00           C
ATOM    118  CA  LEU   118      19.156  21.919 -11.637  1.00 25.00           C
ATOM    119  CA  ASP   119      22.674  20.482 -11.816  1.00 25.00           C
ATOM    120  CA  LEU   120      23.960  23.561 -13.579  1.00 25.00           C
ATOM    121  CA  PRO   121      24.711  23.065 -17.229  1.00 25.00           C
ATOM    122  CA  GLY   122      21.340  23.354 -19.070  1.00 25.00           C
ATOM    123  CA  ILE   123      17.827  22.514 -18.017  1.00 25.00           C
ATOM    124  CA  ASN   124      17.978  18.954 -19.334  1.00 25.00           C
ATOM    125  CA  LEU   125      14.474  18.313 -20.713  1.00 25.00           C
ATOM    126  CA  GLU   126      14.435  14.577 -20.692  1.00 25.00           C
ATOM    127  CA  PHE   127      12.300  13.446 -17.748  1.00 25.00           C
TER
END
