
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS168_3
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS168_3.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        83 - 120         4.93    23.57
  LCS_AVERAGE:     21.74

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        94 - 119         1.95    21.76
  LCS_AVERAGE:      9.72

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        99 - 119         0.84    21.27
  LCS_AVERAGE:      6.05

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      3    8   15     0    3    4    7    8    8    9    9   10   17   19   23   32   37   40   43   45   45   51   53 
LCS_GDT     M       4     M       4      3    8   15     0    3    4    7    8    8    9    9   10   13   14   16   20   23   33   39   43   44   46   50 
LCS_GDT     N       5     N       5      5    8   15     4    5    5    7    8    8    9   10   12   13   16   16   17   19   27   31   34   34   37   38 
LCS_GDT     L       6     L       6      5    8   15     4    5    5    7    8    8    9   10   12   13   16   16   17   22   27   31   34   34   37   39 
LCS_GDT     K       7     K       7      5    8   15     4    5    5    7    8    8    9    9   12   13   16   16   17   20   28   30   35   40   41   41 
LCS_GDT     R       8     R       8      5    8   15     4    5    5    7    8    8    9   10   12   16   20   23   29   33   38   40   43   46   49   51 
LCS_GDT     E       9     E       9      5    8   15     3    5    5    7    8   10   12   15   17   20   23   26   29   33   38   40   45   46   49   52 
LCS_GDT     Q      10     Q      10      3    8   15     3    3    4    7    8   13   14   18   20   23   25   28   30   38   41   43   45   49   49   52 
LCS_GDT     E      11     E      11      3    7   15     3    3    9   13   15   21   24   28   29   34   36   39   39   41   43   46   49   54   57   60 
LCS_GDT     F      12     F      12      3    6   15     3    3    4   23   24   26   30   32   33   34   37   39   39   41   43   46   49   54   57   60 
LCS_GDT     V      13     V      13      3    5   15     3   15   22   23   25   26   30   32   33   34   37   39   39   41   43   46   49   54   57   60 
LCS_GDT     S      14     S      14      3    5   15     3    4    4    6    6   22   29   30   33   34   37   39   42   45   46   47   49   54   57   60 
LCS_GDT     Q      15     Q      15      3    5   15     3    4    4    7   15   21   26   31   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     Y      16     Y      16      4    5   16     3    4    5    6   15   20   26   30   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     H      17     H      17      4    5   16     3    4    5    6    6    8   11   13   18   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     F      18     F      18      4    5   16     3    4    5    6    6   10   14   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     D      19     D      19      4    5   16     3    4    5    6    6    7    9   12   16   24   27   31   36   38   40   43   47   50   55   58 
LCS_GDT     A      20     A      20      3    5   19     3    3    4    6    9   10   14   17   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     R      21     R      21      3    4   20     3    3    4    5    7   10   13   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     N      22     N      22      3    7   24     3    3    4    4    6    8   10   14   17   22   24   26   30   33   39   43   47   50   55   58 
LCS_GDT     F      23     F      23      6    7   24     5    6    6    6    8   10   14   14   17   19   24   24   30   33   37   43   47   50   55   58 
LCS_GDT     E      24     E      24      6    7   24     5    6    6    6    8   10   14   14   17   19   24   24   30   33   37   43   47   50   52   58 
LCS_GDT     W      25     W      25      6    7   24     5    6    6    6    8   10   14   14   17   18   24   24   30   33   36   43   47   50   52   58 
LCS_GDT     E      26     E      26      6    7   24     5    6    6    6    7   10   14   14   17   19   24   26   30   33   37   43   47   50   55   58 
LCS_GDT     N      27     N      27      6    7   24     5    6    6    6    7   10   14   14   17   19   24   26   30   33   37   43   47   50   55   58 
LCS_GDT     E      28     E      28      6    7   24     5    6    6    6    6    8   12   12   16   18   19   24   28   33   37   43   47   50   55   58 
LCS_GDT     N      29     N      29      4    9   24     3    4    5    7   10   14   17   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     G      30     G      30      5    9   24     3    5    5    7   10   14   17   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     A      31     A      31      5    9   24     3    5    5    7   10   14   17   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     P      32     P      32      5    9   24     3    5    5    7   10   14   17   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     E      33     E      33      5    9   24     3    5    5   10   13   19   25   31   35   36   38   40   42   45   46   47   47   50   57   60 
LCS_GDT     T      34     T      34      5    9   24     3    8   10   12   18   21   26   31   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     K      35     K      35      4   11   24     4    8   10   13   18   22   26   31   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     V      36     V      36      4   11   24     3    5   10   12   13   18   22   25   30   32   35   38   42   45   46   47   49   54   57   60 
LCS_GDT     D      37     D      37      4   11   24     3    3    4    9   11   14   17   21   23   28   31   34   39   41   43   46   49   54   57   60 
LCS_GDT     V      38     V      38      4   11   24     3    3    4    9   11   13   17   19   20   24   28   33   36   41   43   46   49   54   57   60 
LCS_GDT     N      39     N      39      3   11   24     1    3    4    6    8   14   17   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     F      40     F      40      3   11   24     3    4    5    9   11   14   17   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     Q      41     Q      41      3   11   24     3    3    5    7   11   14   17   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     L      42     L      42      3   11   24     3    4    5    9   11   14   17   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     L      43     L      43      3   11   24     3    4    5    9   11   14   17   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     Q      44     Q      44      3   11   24     3    4    5    9   11   12   17   19   20   24   28   31   36   38   40   43   46   50   53   58 
LCS_GDT     H      45     H      45      3   11   24     3    3    5    9   11   14   17   19   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     D      46     D      46      4    6   24     4    4    4    5    6    8   11   15   19   23   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     Q      47     Q      47      4    6   24     4    4    4    4    6    7    7   12   15   20   22   31   35   38   40   43   47   50   55   58 
LCS_GDT     E      48     E      48      4    6   24     4    4    4    4    6    6    7    7   10   13   19   22   27   30   30   32   43   45   50   53 
LCS_GDT     N      49     N      49      4    8   24     4    4    4    5    6    8   11   15   19   20   26   28   31   36   39   43   47   50   55   58 
LCS_GDT     Q      50     Q      50      4   10   24     3    3    5    8   11   11   16   18   20   22   28   29   31   36   39   43   47   50   55   58 
LCS_GDT     V      51     V      51      4   10   24     3    3    5    7   11   11   16   18   20   22   28   29   31   36   38   41   47   50   55   58 
LCS_GDT     T      52     T      52      4   10   24     3    3    5    8   11   11   16   18   20   23   28   29   31   38   39   43   47   50   55   58 
LCS_GDT     S      53     S      53      4   10   24     3    3    5    8   11   12   16   18   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     L      54     L      54      4   10   24     3    3    5    8   11   12   16   18   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     I      55     I      55      4   10   24     3    3    5    8   11   11   16   18   20   24   28   33   36   38   40   43   47   50   55   58 
LCS_GDT     V      56     V      56      4   10   24     4    4    6    7   11   12   16   18   20   29   32   36   37   41   43   46   49   54   57   60 
LCS_GDT     I      57     I      57      3   10   24     3    3    5    7   11   21   21   24   28   31   34   36   37   41   43   46   49   54   57   60 
LCS_GDT     L      58     L      58      3   10   24     3    3    5    8   11   21   27   29   33   34   36   39   39   41   43   46   49   54   57   60 
LCS_GDT     S      59     S      59      4   10   24     3    4    6   13   21   26   30   32   33   34   37   39   39   41   43   46   49   54   57   60 
LCS_GDT     F      60     F      60      6   10   24     4    8   10   12   15   21   26   31   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     M      61     M      61      6   10   24     4    8   10   13   18   22   26   31   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     I      62     I      62      6   10   24     4    7   10   13   18   21   26   31   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     V      63     V      63      6   10   23     4    8   10   12   18   21   26   31   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     F      64     F      64      6   10   23     4    8   10   12   15   19   22   27   30   35   36   40   41   42   44   47   49   54   57   60 
LCS_GDT     D      65     D      65      6   10   23     4    8   10   12   14   19   20   24   27   31   34   36   38   42   43   45   49   53   57   59 
LCS_GDT     K      66     K      66      6   10   23     3    5    7   11   15   20   23   28   31   35   36   40   41   42   43   47   49   54   57   60 
LCS_GDT     F      67     F      67      6   10   23     3    5    7    7   15   21   26   31   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     V      68     V      68      6   10   23     3    5    7    7   10   21   26   31   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     I      69     I      69      6   10   23     3    4    7    9   16   22   26   31   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     S      70     S      70      4    5   23     3    3    4    4    9   18   21   30   31   34   37   39   39   41   46   46   49   54   57   60 
LCS_GDT     G      71     G      71      4    7   23     3    3    4    5    7    8    9   27   29   31   34   36   39   41   43   46   49   52   56   60 
LCS_GDT     T      72     T      72      4    7   23     3    3    4    6   10   14   17   19   20   31   34   36   37   41   43   46   49   54   57   60 
LCS_GDT     I      73     I      73      5    7   23     4    5    6    6   10   12   16   17   25   31   34   36   37   41   43   46   49   54   57   60 
LCS_GDT     S      74     S      74      5    7   23     4    5    6    8   11   11   14   18   25   29   34   36   37   41   43   46   49   54   57   60 
LCS_GDT     Q      75     Q      75      5    7   31     4    5    6    6    8   13   14   18   25   29   34   36   37   41   43   46   49   54   57   60 
LCS_GDT     V      76     V      76      5    7   31     3    5    6    6    8    9   11   17   20   29   34   36   37   41   43   46   49   54   57   60 
LCS_GDT     N      77     N      77      5    7   31     3    4    5    6    8   10   12   15   19   25   32   36   37   41   43   46   49   54   57   60 
LCS_GDT     H      78     H      78      5    7   31     3    4    5    6    8   10   12   15   19   22   25   31   34   38   40   43   45   47   49   52 
LCS_GDT     I      79     I      79      5    7   31     3    4    5    6    8   11   13   17   19   22   25   27   29   36   41   41   45   49   51   57 
LCS_GDT     D      80     D      80      5    7   31     3    4    5    6    8   11   13   17   19   22   25   27   29   33   38   40   43   46   49   52 
LCS_GDT     G      81     G      81      4    7   31     3    3    4    6    8   11   13   17   19   22   25   27   29   33   38   41   42   46   49   52 
LCS_GDT     R      82     R      82      4    7   31     3    3    5    5    7   11   13   17   19   22   26   31   36   38   41   43   48   50   51   55 
LCS_GDT     I      83     I      83      4    7   38     3    3    4    5    6    8    9   11   15   18   21   34   36   41   43   46   49   54   57   60 
LCS_GDT     V      84     V      84      3    6   38     3    5    6    6    8   11   13   17   25   29   34   36   37   41   43   46   49   54   57   60 
LCS_GDT     N      85     N      85      3    6   38     3    3    5    8   11   14   18   20   25   28   32   36   37   41   42   46   49   54   57   60 
LCS_GDT     E      86     E      86      3    6   38     3    3    6   14   16   21   21   22   25   28   32   36   37   40   42   45   46   49   50   54 
LCS_GDT     P      87     P      87      5    7   38     3    3    6    7    7    8   11   15   18   19   23   27   31   37   40   43   45   47   50   53 
LCS_GDT     S      88     S      88      5    7   38     3    4    6    7    8   10   13   17   19   22   23   31   35   37   40   43   44   47   50   51 
LCS_GDT     E      89     E      89      5    7   38     3    4    6   15   22   26   30   32   35   36   38   40   42   45   46   47   47   50   51   56 
LCS_GDT     L      90     L      90      5    7   38     3    4    6   22   25   26   30   32   35   36   38   40   42   45   46   47   47   50   54   60 
LCS_GDT     N      91     N      91      5   17   38     3    4    6    7   17   22   29   31   35   36   38   40   42   45   46   47   47   50   51   54 
LCS_GDT     Q      92     Q      92     10   18   38     8    9    9   13   15   18   22   26   29   34   37   39   39   45   46   47   47   50   51   52 
LCS_GDT     E      93     E      93     10   22   38     8    9    9   13   17   23   30   32   33   34   37   39   39   45   46   47   47   50   51   54 
LCS_GDT     E      94     E      94     10   26   38     8    9    9   13   18   23   30   32   33   34   37   39   42   45   46   47   47   50   51   54 
LCS_GDT     V      95     V      95     10   26   38     8    9   11   14   22   26   30   32   35   36   38   40   42   45   46   47   47   50   51   56 
LCS_GDT     E      96     E      96     10   26   38     8    9   11   19   23   26   30   32   35   36   38   40   42   45   46   47   47   50   51   56 
LCS_GDT     T      97     T      97     10   26   38     8   11   18   23   25   26   30   32   33   36   38   40   42   45   46   47   47   50   54   57 
LCS_GDT     L      98     L      98     17   26   38     8    9    9   20   25   26   30   32   35   36   38   40   42   45   46   47   47   51   56   60 
LCS_GDT     A      99     A      99     21   26   38     9   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     R     100     R     100     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   52   57   60 
LCS_GDT     P     101     P     101     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     C     102     C     102     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     L     103     L     103     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     N     104     N     104     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     M     105     M     105     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     L     106     L     106     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     N     107     N     107     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     R     108     R     108     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     L     109     L     109     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     T     110     T     110     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     Y     111     Y     111     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     E     112     E     112     21   26   38     8   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     V     113     V     113     21   26   38     8   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     T     114     T     114     21   26   38     7   17   22   23   25   26   30   32   33   35   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     E     115     E     115     21   26   38     7   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     I     116     I     116     21   26   38    11   17   22   23   25   26   30   32   35   36   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     A     117     A     117     21   26   38     6   16   22   23   25   26   30   32   33   35   38   39   42   45   46   47   49   52   56   60 
LCS_GDT     L     118     L     118     21   26   38     6   16   22   23   25   26   30   32   33   34   37   39   42   45   46   47   49   50   56   59 
LCS_GDT     D     119     D     119     21   26   38     3   16   22   23   25   26   30   32   33   34   38   40   42   45   46   47   49   54   57   60 
LCS_GDT     L     120     L     120      5   24   38     3    5    5    6    8   14   20   23   27   31   34   36   38   41   43   46   49   54   57   60 
LCS_GDT     P     121     P     121      5    7   37     3    5    5    6    6    8    8    8   10   14   20   25   35   39   43   46   49   54   57   60 
LCS_GDT     G     122     G     122      5    7   35     4    5    5    6    6    8    8    8    9   10   14   15   15   20   22   26   28   49   55   57 
LCS_GDT     I     123     I     123      5    7   15     4    4    5    6    6    8    8    8   10   11   14   15   17   20   22   26   28   33   49   55 
LCS_GDT     N     124     N     124      5    7   15     4    5    5    6    6    8    8    9   10   11   14   15   17   20   22   26   27   31   33   38 
LCS_GDT     L     125     L     125      5    7   15     4    5    5    6    6    8    8    9   10   11   14   15   15   20   22   23   26   26   29   38 
LCS_GDT     E     126     E     126      5    7   15     3    4    5    6    6    7    8    9   10   11   14   15   17   20   22   23   26   27   32   38 
LCS_GDT     F     127     F     127      4    7   15     3    4    5    6    6    6    8    9   10   11   14   15   17   20   22   23   26   31   32   38 
LCS_AVERAGE  LCS_A:  12.50  (   6.05    9.72   21.74 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     17     22     23     25     26     30     32     35     36     38     40     42     45     46     47     49     54     57     60 
GDT PERCENT_CA   8.80  13.60  17.60  18.40  20.00  20.80  24.00  25.60  28.00  28.80  30.40  32.00  33.60  36.00  36.80  37.60  39.20  43.20  45.60  48.00
GDT RMS_LOCAL    0.25   0.58   0.86   0.94   1.30   1.37   1.94   2.24   3.02   3.08   3.26   3.52   3.70   3.99   4.10   4.30   5.60   6.16   6.34   6.67
GDT RMS_ALL_CA  20.57  20.98  21.19  21.18  21.42  21.43  21.61  21.93  19.52  19.66  19.76  19.52  20.19  20.43  20.46  20.19  16.43  16.40  16.25  16.85

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         44.718
LGA    M       4      M       4         39.871
LGA    N       5      N       5         37.458
LGA    L       6      L       6         30.660
LGA    K       7      K       7         27.856
LGA    R       8      R       8         21.091
LGA    E       9      E       9         16.602
LGA    Q      10      Q      10         12.450
LGA    E      11      E      11          5.699
LGA    F      12      F      12          3.907
LGA    V      13      V      13          1.426
LGA    S      14      S      14          5.755
LGA    Q      15      Q      15         10.537
LGA    Y      16      Y      16         13.158
LGA    H      17      H      17         20.275
LGA    F      18      F      18         23.610
LGA    D      19      D      19         30.570
LGA    A      20      A      20         34.761
LGA    R      21      R      21         35.092
LGA    N      22      N      22         33.877
LGA    F      23      F      23         34.992
LGA    E      24      E      24         37.918
LGA    W      25      W      25         31.520
LGA    E      26      E      26         29.761
LGA    N      27      N      27         35.981
LGA    E      28      E      28         33.936
LGA    N      29      N      29         33.346
LGA    G      30      G      30         31.978
LGA    A      31      A      31         28.777
LGA    P      32      P      32         22.351
LGA    E      33      E      33         20.610
LGA    T      34      T      34         16.871
LGA    K      35      K      35         13.382
LGA    V      36      V      36          9.574
LGA    D      37      D      37          9.190
LGA    V      38      V      38         11.784
LGA    N      39      N      39         16.847
LGA    F      40      F      40         19.107
LGA    Q      41      Q      41         25.457
LGA    L      42      L      42         30.239
LGA    L      43      L      43         35.516
LGA    Q      44      Q      44         42.092
LGA    H      45      H      45         46.322
LGA    D      46      D      46         47.102
LGA    Q      47      Q      47         48.159
LGA    E      48      E      48         48.121
LGA    N      49      N      49         48.047
LGA    Q      50      Q      50         44.630
LGA    V      51      V      51         38.710
LGA    T      52      T      52         34.722
LGA    S      53      S      53         30.639
LGA    L      54      L      54         24.414
LGA    I      55      I      55         19.266
LGA    V      56      V      56         13.228
LGA    I      57      I      57         10.321
LGA    L      58      L      58          4.975
LGA    S      59      S      59          3.161
LGA    F      60      F      60          7.302
LGA    M      61      M      61         11.748
LGA    I      62      I      62         13.700
LGA    V      63      V      63         17.791
LGA    F      64      F      64         21.199
LGA    D      65      D      65         25.636
LGA    K      66      K      66         23.031
LGA    F      67      F      67         17.872
LGA    V      68      V      68         15.153
LGA    I      69      I      69          9.235
LGA    S      70      S      70          6.501
LGA    G      71      G      71          6.663
LGA    T      72      T      72          7.881
LGA    I      73      I      73          9.372
LGA    S      74      S      74         11.124
LGA    Q      75      Q      75         10.858
LGA    V      76      V      76         11.198
LGA    N      77      N      77         14.428
LGA    H      78      H      78         19.859
LGA    I      79      I      79         21.123
LGA    D      80      D      80         25.002
LGA    G      81      G      81         25.585
LGA    R      82      R      82         18.498
LGA    I      83      I      83         17.415
LGA    V      84      V      84         15.973
LGA    N      85      N      85         17.791
LGA    E      86      E      86         16.083
LGA    P      87      P      87         14.000
LGA    S      88      S      88         10.016
LGA    E      89      E      89          3.312
LGA    L      90      L      90          3.002
LGA    N      91      N      91          5.055
LGA    Q      92      Q      92          6.034
LGA    E      93      E      93          3.667
LGA    E      94      E      94          3.437
LGA    V      95      V      95          2.637
LGA    E      96      E      96          1.963
LGA    T      97      T      97          0.980
LGA    L      98      L      98          2.236
LGA    A      99      A      99          2.306
LGA    R     100      R     100          3.540
LGA    P     101      P     101          3.320
LGA    C     102      C     102          2.164
LGA    L     103      L     103          2.209
LGA    N     104      N     104          2.520
LGA    M     105      M     105          1.796
LGA    L     106      L     106          0.797
LGA    N     107      N     107          1.529
LGA    R     108      R     108          1.147
LGA    L     109      L     109          0.811
LGA    T     110      T     110          0.716
LGA    Y     111      Y     111          0.707
LGA    E     112      E     112          0.973
LGA    V     113      V     113          0.562
LGA    T     114      T     114          1.104
LGA    E     115      E     115          2.067
LGA    I     116      I     116          2.000
LGA    A     117      A     117          1.004
LGA    L     118      L     118          2.623
LGA    D     119      D     119          3.359
LGA    L     120      L     120         10.260
LGA    P     121      P     121         15.045
LGA    G     122      G     122         17.396
LGA    I     123      I     123         20.169
LGA    N     124      N     124         25.381
LGA    L     125      L     125         26.776
LGA    E     126      E     126         30.835
LGA    F     127      F     127         29.302

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     32    2.24    23.800    20.894     1.369

LGA_LOCAL      RMSD =  2.237  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.028  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 14.095  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.121873 * X  +   0.901199 * Y  +   0.415918 * Z  +  10.040403
  Y_new =   0.910926 * X  +   0.267967 * Y  +  -0.313701 * Z  +  30.662882
  Z_new =  -0.394159 * X  +   0.340638 * Y  +  -0.853583 * Z  +   4.361945 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.761889   -0.379703  [ DEG:   158.2446    -21.7554 ]
  Theta =   0.405152    2.736440  [ DEG:    23.2135    156.7865 ]
  Phi   =   1.703797   -1.437796  [ DEG:    97.6204    -82.3796 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS168_3                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS168_3.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   32   2.24  20.894    14.10
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS168_3
PFRMAT TS
TARGET T0383
MODEL 3
PARENT N/A
ATOM      1  CA  SER     1      -3.644  21.283 -13.144  1.00 25.00           C
ATOM      2  CA  ASN     2      -3.290  24.919 -11.968  1.00 25.00           C
ATOM      3  CA  ALA     3       0.316  26.070 -12.058  1.00 25.00           C
ATOM      4  CA  MET     4       0.300  25.982  -8.284  1.00 25.00           C
ATOM      5  CA  ASN     5       1.802  27.542  -5.115  1.00 25.00           C
ATOM      6  CA  LEU     6       3.325  27.751  -1.576  1.00 25.00           C
ATOM      7  CA  LYS     7       3.396  26.234   1.955  1.00 25.00           C
ATOM      8  CA  ARG     8       6.030  28.235   3.892  1.00 25.00           C
ATOM      9  CA  GLU     9       9.172  27.867   5.966  1.00 25.00           C
ATOM     10  CA  GLN    10      12.563  26.151   6.235  1.00 25.00           C
ATOM     11  CA  GLU    11      14.945  26.322   9.229  1.00 25.00           C
ATOM     12  CA  PHE    12      12.116  27.665  11.434  1.00 25.00           C
ATOM     13  CA  VAL    13       9.828  24.823  10.271  1.00 25.00           C
ATOM     14  CA  SER    14      12.562  22.262  11.068  1.00 25.00           C
ATOM     15  CA  GLN    15      13.012  23.790  14.551  1.00 25.00           C
ATOM     16  CA  TYR    16      16.784  23.706  13.908  1.00 25.00           C
ATOM     17  CA  HIS    17      17.167  23.370  17.672  1.00 25.00           C
ATOM     18  CA  PHE    18      14.085  24.870  19.405  1.00 25.00           C
ATOM     19  CA  ASP    19      14.934  23.992  23.022  1.00 25.00           C
ATOM     20  CA  ALA    20      12.028  21.828  24.170  1.00 25.00           C
ATOM     21  CA  ARG    21      11.121  18.750  22.217  1.00 25.00           C
ATOM     22  CA  ASN    22      11.711  20.474  18.920  1.00 25.00           C
ATOM     23  CA  PHE    23       8.493  22.283  17.994  1.00 25.00           C
ATOM     24  CA  GLU    24       6.509  24.709  20.195  1.00 25.00           C
ATOM     25  CA  TRP    25       5.620  26.810  17.119  1.00 25.00           C
ATOM     26  CA  GLU    26       4.466  23.661  15.270  1.00 25.00           C
ATOM     27  CA  ASN    27       2.308  22.659  18.271  1.00 25.00           C
ATOM     28  CA  GLU    28       0.764  26.162  18.361  1.00 25.00           C
ATOM     29  CA  ASN    29      -1.067  25.229  21.563  1.00 25.00           C
ATOM     30  CA  GLY    30      -3.736  23.972  19.238  1.00 25.00           C
ATOM     31  CA  ALA    31      -2.326  22.656  15.910  1.00 25.00           C
ATOM     32  CA  PRO    32      -2.230  25.919  13.907  1.00 25.00           C
ATOM     33  CA  GLU    33      -2.461  24.329  10.412  1.00 25.00           C
ATOM     34  CA  THR    34      -0.416  25.051   7.322  1.00 25.00           C
ATOM     35  CA  LYS    35       0.370  28.302   9.250  1.00 25.00           C
ATOM     36  CA  VAL    36       1.552  29.569   5.828  1.00 25.00           C
ATOM     37  CA  ASP    37       1.451  31.326   2.521  1.00 25.00           C
ATOM     38  CA  VAL    38       4.731  32.064   0.651  1.00 25.00           C
ATOM     39  CA  ASN    39       7.145  31.784  -2.275  1.00 25.00           C
ATOM     40  CA  PHE    40       8.376  35.293  -1.472  1.00 25.00           C
ATOM     41  CA  GLN    41      10.123  34.951  -4.767  1.00 25.00           C
ATOM     42  CA  LEU    42      10.200  38.597  -5.784  1.00 25.00           C
ATOM     43  CA  LEU    43      13.284  38.899  -8.036  1.00 25.00           C
ATOM     44  CA  GLN    44      13.745  38.491 -11.808  1.00 25.00           C
ATOM     45  CA  HIS    45      13.489  41.430 -14.300  1.00 25.00           C
ATOM     46  CA  ASP    46      10.202  42.315 -12.585  1.00 25.00           C
ATOM     47  CA  GLN    47       7.955  45.182 -11.403  1.00 25.00           C
ATOM     48  CA  GLU    48      10.275  45.801  -8.419  1.00 25.00           C
ATOM     49  CA  ASN    49      13.308  45.857 -10.756  1.00 25.00           C
ATOM     50  CA  GLN    50      16.922  46.524  -9.770  1.00 25.00           C
ATOM     51  CA  VAL    51      15.667  47.086  -6.246  1.00 25.00           C
ATOM     52  CA  THR    52      15.973  43.369  -5.428  1.00 25.00           C
ATOM     53  CA  SER    53      13.837  41.127  -3.244  1.00 25.00           C
ATOM     54  CA  LEU    54      11.625  39.174  -0.817  1.00 25.00           C
ATOM     55  CA  ILE    55      12.620  36.059   1.220  1.00 25.00           C
ATOM     56  CA  VAL    56       9.742  37.041   3.563  1.00 25.00           C
ATOM     57  CA  ILE    57       6.119  35.848   3.499  1.00 25.00           C
ATOM     58  CA  LEU    58       5.263  32.959   5.885  1.00 25.00           C
ATOM     59  CA  SER    59       3.833  32.474   9.375  1.00 25.00           C
ATOM     60  CA  PHE    60       5.869  29.260   9.618  1.00 25.00           C
ATOM     61  CA  MET    61       4.719  25.683   9.256  1.00 25.00           C
ATOM     62  CA  ILE    62       5.881  23.553   6.378  1.00 25.00           C
ATOM     63  CA  VAL    63       3.586  20.726   5.327  1.00 25.00           C
ATOM     64  CA  PHE    64       4.576  17.275   4.174  1.00 25.00           C
ATOM     65  CA  ASP    65       3.966  13.589   3.273  1.00 25.00           C
ATOM     66  CA  LYS    66       6.615  11.282   1.726  1.00 25.00           C
ATOM     67  CA  PHE    67       9.137  14.107   2.088  1.00 25.00           C
ATOM     68  CA  VAL    68      10.154  17.483   3.588  1.00 25.00           C
ATOM     69  CA  ILE    69       9.064  21.115   3.200  1.00 25.00           C
ATOM     70  CA  SER    70       6.034  22.035   1.144  1.00 25.00           C
ATOM     71  CA  GLY    71       7.869  24.214  -1.451  1.00 25.00           C
ATOM     72  CA  THR    72      10.177  25.734   1.153  1.00 25.00           C
ATOM     73  CA  ILE    73      11.121  29.403   0.773  1.00 25.00           C
ATOM     74  CA  SER    74       9.345  32.034   2.959  1.00 25.00           C
ATOM     75  CA  GLN    75      10.396  32.694   6.562  1.00 25.00           C
ATOM     76  CA  VAL    76       9.036  33.205  10.059  1.00 25.00           C
ATOM     77  CA  ASN    77       8.190  36.690   8.838  1.00 25.00           C
ATOM     78  CA  HIS    78       4.638  37.662   7.933  1.00 25.00           C
ATOM     79  CA  ILE    79       5.366  41.213   6.859  1.00 25.00           C
ATOM     80  CA  ASP    80       2.023  41.957   8.538  1.00 25.00           C
ATOM     81  CA  GLY    81       0.167  44.521  10.597  1.00 25.00           C
ATOM     82  CA  ARG    82       2.331  44.137  13.762  1.00 25.00           C
ATOM     83  CA  ILE    83       5.921  44.548  12.616  1.00 25.00           C
ATOM     84  CA  VAL    84       6.232  48.161  11.349  1.00 25.00           C
ATOM     85  CA  ASN    85       7.064  51.822  12.180  1.00 25.00           C
ATOM     86  CA  GLU    86       8.788  54.528  14.163  1.00 25.00           C
ATOM     87  CA  PRO    87       8.442  54.956  17.955  1.00 25.00           C
ATOM     88  CA  SER    88       9.096  52.639  20.857  1.00 25.00           C
ATOM     89  CA  GLU    89       6.880  49.697  21.736  1.00 25.00           C
ATOM     90  CA  LEU    90       7.446  47.781  18.481  1.00 25.00           C
ATOM     91  CA  ASN    91       8.448  44.299  19.741  1.00 25.00           C
ATOM     92  CA  GLN    92      12.123  45.186  19.124  1.00 25.00           C
ATOM     93  CA  GLU    93      15.786  44.908  18.039  1.00 25.00           C
ATOM     94  CA  GLU    94      15.870  41.251  19.173  1.00 25.00           C
ATOM     95  CA  VAL    95      12.662  40.541  17.205  1.00 25.00           C
ATOM     96  CA  GLU    96      14.176  42.188  14.096  1.00 25.00           C
ATOM     97  CA  THR    97      17.342  40.069  14.485  1.00 25.00           C
ATOM     98  CA  LEU    98      15.212  36.901  14.799  1.00 25.00           C
ATOM     99  CA  ALA    99      13.270  37.863  11.642  1.00 25.00           C
ATOM    100  CA  ARG   100      16.559  38.440   9.766  1.00 25.00           C
ATOM    101  CA  PRO   101      17.843  35.020  10.916  1.00 25.00           C
ATOM    102  CA  CYS   102      14.593  33.375   9.734  1.00 25.00           C
ATOM    103  CA  LEU   103      14.921  35.110   6.336  1.00 25.00           C
ATOM    104  CA  ASN   104      18.541  33.896   6.039  1.00 25.00           C
ATOM    105  CA  MET   105      17.439  30.326   6.882  1.00 25.00           C
ATOM    106  CA  LEU   106      14.686  30.522   4.227  1.00 25.00           C
ATOM    107  CA  ASN   107      17.227  31.767   1.647  1.00 25.00           C
ATOM    108  CA  ARG   108      19.583  28.881   2.539  1.00 25.00           C
ATOM    109  CA  LEU   109      16.708  26.382   2.150  1.00 25.00           C
ATOM    110  CA  THR   110      15.835  27.879  -1.266  1.00 25.00           C
ATOM    111  CA  TYR   111      19.498  27.601  -2.350  1.00 25.00           C
ATOM    112  CA  GLU   112      19.581  23.945  -1.216  1.00 25.00           C
ATOM    113  CA  VAL   113      16.374  23.235  -3.184  1.00 25.00           C
ATOM    114  CA  THR   114      17.888  24.882  -6.292  1.00 25.00           C
ATOM    115  CA  GLU   115      21.055  22.762  -5.904  1.00 25.00           C
ATOM    116  CA  ILE   116      18.925  19.595  -5.589  1.00 25.00           C
ATOM    117  CA  ALA   117      16.982  20.557  -8.746  1.00 25.00           C
ATOM    118  CA  LEU   118      19.090  21.867 -11.635  1.00 25.00           C
ATOM    119  CA  ASP   119      21.911  19.322 -11.240  1.00 25.00           C
ATOM    120  CA  LEU   120      23.347  15.948 -10.031  1.00 25.00           C
ATOM    121  CA  PRO   121      21.461  13.330 -12.075  1.00 25.00           C
ATOM    122  CA  GLY   122      21.807  13.837 -15.849  1.00 25.00           C
ATOM    123  CA  ILE   123      18.031  14.123 -16.195  1.00 25.00           C
ATOM    124  CA  ASN   124      16.214  14.847 -19.457  1.00 25.00           C
ATOM    125  CA  LEU   125      13.331  17.096 -20.392  1.00 25.00           C
ATOM    126  CA  GLU   126      12.603  19.617 -23.084  1.00 25.00           C
ATOM    127  CA  PHE   127      12.166  22.699 -20.916  1.00 25.00           C
TER
END
