
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  125 , name T0383TS168_1
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS168_1.T0383.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        81 - 120         4.96    23.20
  LONGEST_CONTINUOUS_SEGMENT:    40        82 - 121         4.57    23.26
  LONGEST_CONTINUOUS_SEGMENT:    40        83 - 122         4.72    23.22
  LCS_AVERAGE:     24.29

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        94 - 120         1.93    22.96
  LCS_AVERAGE:      9.38

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        99 - 119         0.83    22.76
  LONGEST_CONTINUOUS_SEGMENT:    21       100 - 120         1.00    22.77
  LCS_AVERAGE:      6.15

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  125
LCS_GDT     A       3     A       3      5    6   16     0    4    5    5    6    9   11   11   13   15   16   18   22   25   26   28   32   37   40   43 
LCS_GDT     M       4     M       4      5    6   16     3    4    5    5    6    9   10   11   12   15   16   18   22   24   26   28   29   35   35   38 
LCS_GDT     N       5     N       5      5    6   16     3    4    5    5    6    9   10   11   11   12   16   19   23   24   26   28   29   31   34   35 
LCS_GDT     L       6     L       6      5    6   16     3    4    5    5    6    9   10   11   11   12   16   19   23   24   26   28   29   31   34   35 
LCS_GDT     K       7     K       7      5    6   16     3    3    5    5    6    9   10   11   11   12   16   19   23   26   29   33   37   39   43   46 
LCS_GDT     R       8     R       8      3    6   16     3    3    4    5    5    9   10   12   15   22   24   28   34   36   39   43   46   51   53   55 
LCS_GDT     E       9     E       9      3    6   16     3    3    4    5    6    9   10   11   15   19   25   31   34   40   43   47   49   51   53   55 
LCS_GDT     Q      10     Q      10      3    6   16     3    3    4    6    6    9   10   11   29   31   34   36   39   40   43   47   49   51   53   55 
LCS_GDT     E      11     E      11      3    6   16     3    3    4    6    6    9    9   11   11   16   18   30   38   39   42   45   48   50   53   55 
LCS_GDT     F      12     F      12      3    6   16     3    3    4    7   10   26   28   30   32   35   36   37   39   40   42   44   46   50   53   55 
LCS_GDT     V      13     V      13      3    4   16     3    3    4    7    9   10   13   17   27   29   34   37   38   40   42   44   46   48   52   55 
LCS_GDT     S      14     S      14      3    4   16     3    3    4    7    9   14   18   21   27   29   33   36   38   40   41   42   45   47   49   52 
LCS_GDT     Q      15     Q      15      3    5   16     3    3    3    6    7   14   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     Y      16     Y      16      4    5   16     1    3    4    6    8   14   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     H      17     H      17      4    5   16     3    3    4    6    8   13   16   20   23   29   32   36   38   39   41   42   43   47   49   51 
LCS_GDT     F      18     F      18      4    5   16     3    3    4    4    5    8   11   15   19   24   32   35   38   39   41   42   43   47   49   51 
LCS_GDT     D      19     D      19      4    5   15     3    3    4    4    6    8    8   10   12   14   22   29   31   36   40   42   42   43   46   50 
LCS_GDT     A      20     A      20      4    5   15     1    3    5    5    6    8    8   10   14   19   22   29   33   37   40   42   42   43   46   49 
LCS_GDT     R      21     R      21      4    5   16     1    3    5    5    6    8    8   10   12   17   22   29   31   36   39   42   42   43   45   47 
LCS_GDT     N      22     N      22      4    4   16     3    3    5    5    6    8    8    9   12   16   17   18   21   23   28   34   40   42   44   47 
LCS_GDT     F      23     F      23      6    6   16     5    6    6    6    6    7    8    9   12   16   17   18   19   20   22   24   27   34   39   44 
LCS_GDT     E      24     E      24      6    6   16     5    6    6    6    6    8    8    9   12   16   17   18   19   20   24   30   35   39   44   46 
LCS_GDT     W      25     W      25      6    6   16     5    6    6    6    6    8    8    9   12   16   17   18   19   20   24   31   37   42   44   47 
LCS_GDT     E      26     E      26      6    6   21     5    6    6    6    6    8    8    9   12   16   17   18   19   20   24   26   32   37   41   46 
LCS_GDT     N      27     N      27      6    6   21     5    6    6    6    6    8    8    9   12   16   17   18   19   20   22   24   27   30   38   43 
LCS_GDT     E      28     E      28      6    6   21     5    6    6    6    6    7    8    9   12   15   17   18   18   20   24   30   36   39   44   46 
LCS_GDT     N      29     N      29      3    6   21     3    3    5    6    7   10   14   17   17   18   20   23   28   30   34   38   41   42   44   47 
LCS_GDT     G      30     G      30      4    6   32     3    4    6    6    7   10   14   17   17   22   25   29   33   37   40   42   43   47   49   51 
LCS_GDT     A      31     A      31      4    6   32     3    4    6    6    7   10   14   17   19   24   28   34   38   39   41   42   43   47   49   51 
LCS_GDT     P      32     P      32      4    6   32     3    4    4    7    8   11   14   17   24   29   33   36   38   39   41   42   43   47   49   51 
LCS_GDT     E      33     E      33      4    6   32     3    4    4    6    7   10   13   17   24   29   33   36   38   39   41   42   43   47   49   51 
LCS_GDT     T      34     T      34      4    6   32     0    4    4    7    8   11   14   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     K      35     K      35      4    8   32     3    4    4    6    8   11   15   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     V      36     V      36      4    8   32     3    4    5    7    9   11   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     D      37     D      37      4    8   32     3    4    5    7    8   14   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     V      38     V      38      5    8   32     3    4    5    7    8   11   16   20   22   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     N      39     N      39      5    8   32     3    4    5    7    8   14   18   21   24   29   33   36   38   39   41   42   43   47   52   54 
LCS_GDT     F      40     F      40      5    8   32     3    4    5    7    8   14   18   21   24   29   33   36   38   39   41   42   43   47   49   55 
LCS_GDT     Q      41     Q      41      5    8   32     3    4    5    7    8   13   18   21   24   29   33   36   38   39   41   42   43   47   51   55 
LCS_GDT     L      42     L      42      5    8   32     3    4    5    7    9   14   18   21   24   29   33   36   38   39   41   42   43   47   49   55 
LCS_GDT     L      43     L      43      5    8   32     2    4    5    6    8   10   16   19   23   26   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     Q      44     Q      44      4    8   32     3    4    5    6    8   13   16   20   23   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     H      45     H      45      4    8   32     3    3    4    6    7   10   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     D      46     D      46      4    8   32     4    4    4    6    8   10   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     Q      47     Q      47      4    5   32     4    4    4    4    6    8   10   13   20   22   27   29   33   37   41   42   43   47   49   52 
LCS_GDT     E      48     E      48      4    5   32     4    4    4    4    5    8   10   10   11   15   16   20   21   32   36   41   43   47   49   51 
LCS_GDT     N      49     N      49      4    7   32     4    4    4    6    7    8   13   18   23   28   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     Q      50     Q      50      5    8   32     3    4    7    8    8   14   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     V      51     V      51      5    8   32     3    4    6    8    8   14   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     T      52     T      52      5    8   32     3    4    7    8    8   14   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     S      53     S      53      5    8   32     3    4    7    8    8   13   16   20   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     L      54     L      54      5    8   32     3    4    7    8    9   13   18   21   24   29   33   36   38   39   41   42   43   48   51   55 
LCS_GDT     I      55     I      55      5    8   32     3    4    7    8    8   14   18   21   24   29   33   36   38   40   43   47   49   51   53   55 
LCS_GDT     V      56     V      56      5    8   32     3    3    7    8    8   11   12   20   23   29   33   36   39   39   43   47   49   51   53   55 
LCS_GDT     I      57     I      57      4    8   32     3    4    9   12   14   22   28   30   32   35   36   37   39   40   42   45   48   51   53   55 
LCS_GDT     L      58     L      58      4    8   32     3    4    4    6    9   26   29   29   32   33   34   36   38   40   42   44   46   47   52   55 
LCS_GDT     S      59     S      59      4   10   32     3    4    5    7    9   11   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     F      60     F      60      4   10   32     3    4    6    7    8   11   18   21   24   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     M      61     M      61      5   10   32     3    5    6    6    9   11   12   16   19   29   33   36   38   39   41   42   43   47   49   52 
LCS_GDT     I      62     I      62      5   10   32     4    5    7    8    9   11   13   15   18   19   24   28   30   34   38   42   43   44   48   52 
LCS_GDT     V      63     V      63      5   10   23     4    5    7    8    9   11   13   15   18   18   24   28   30   34   37   42   43   44   47   51 
LCS_GDT     F      64     F      64      5   10   23     4    5    7    8    9   11   13   15   18   18   24   28   30   31   35   38   40   41   45   48 
LCS_GDT     D      65     D      65      5   10   23     4    5    7    8    9   11   13   15   18   18   24   28   30   31   35   38   40   41   45   48 
LCS_GDT     K      66     K      66      5   10   23     3    5    7    8    9   11   13   14   18   18   24   28   30   31   35   38   40   41   45   48 
LCS_GDT     F      67     F      67      5   10   23     3    5    7    8    9   11   13   15   18   20   24   28   30   32   35   38   40   41   46   51 
LCS_GDT     V      68     V      68      5   10   23     3    5    7    8    9   11   13   16   19   21   24   28   30   32   35   38   40   43   48   52 
LCS_GDT     I      69     I      69      4   10   23     3    3    4    8    9   11   15   18   20   22   23   28   30   32   35   38   41   45   48   52 
LCS_GDT     S      70     S      70      3    5   23     3    3    4    4    7   13   17   18   20   24   26   28   30   37   40   42   43   46   48   52 
LCS_GDT     G      71     G      71      3    5   23     1    3    4    6   14   20   26   27   30   33   34   36   37   40   42   44   46   48   52   54 
LCS_GDT     T      72     T      72      4    8   23     3    3    4    5    7    9   10   12   15   18   20   24   30   37   42   44   46   48   52   55 
LCS_GDT     I      73     I      73      4    8   33     3    3    4    5    7    9   10   12   14   26   31   34   39   40   43   46   49   51   53   55 
LCS_GDT     S      74     S      74      6    8   36     3    5    5    6    8    9   10   14   16   20   25   30   34   40   43   47   49   51   53   55 
LCS_GDT     Q      75     Q      75      6    8   36     3    5    5    6    8    9   12   18   24   28   28   32   34   40   43   47   49   51   53   55 
LCS_GDT     V      76     V      76      6    9   36     3    5    6    7    9   11   15   18   22   25   28   31   34   37   40   46   48   51   53   55 
LCS_GDT     N      77     N      77      6    9   36     3    4    6    7    9   11   15   21   24   28   28   32   34   40   43   47   49   51   53   55 
LCS_GDT     H      78     H      78      6    9   36     3    5    5    7    9   11   15   21   24   28   28   32   34   40   43   47   49   51   53   55 
LCS_GDT     I      79     I      79      6    9   36     3    5    6    7    9   11   15   21   24   28   28   32   34   40   43   47   49   51   53   55 
LCS_GDT     D      80     D      80      4    9   37     3    4    6    7    8   11   15   21   24   28   28   32   34   37   40   43   47   51   53   55 
LCS_GDT     G      81     G      81      4    9   40     3    4    6    7    9   11   13   16   21   23   28   30   34   36   38   41   43   47   51   55 
LCS_GDT     R      82     R      82      4    9   40     3    4    4    7    8   11   15   21   24   28   28   32   34   40   43   47   49   51   53   55 
LCS_GDT     I      83     I      83      4    9   40     3    4    4    6    8    9    9   10   14   22   28   31   34   38   43   47   49   51   53   55 
LCS_GDT     V      84     V      84      4    9   40     1    4    4    7    8   19   24   28   31   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     N      85     N      85      3    6   40     3    3    4    5   16   24   28   29   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     E      86     E      86      4    6   40     3    3   18   22   24   26   28   29   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     P      87     P      87      4    6   40     3    3    4    5    6    8    9   13   20   25   29   31   37   39   41   47   49   51   53   55 
LCS_GDT     S      88     S      88      4    6   40     3    3    4    5    8   10   15   22   32   34   35   37   38   40   43   47   49   51   53   55 
LCS_GDT     E      89     E      89      4    6   40     3    3   13   21   24   26   28   29   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     L      90     L      90      4    6   40     3    3   22   23   25   26   28   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     N      91     N      91      4   17   40     3    3    4   15   23   26   29   30   32   33   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     Q      92     Q      92     10   18   40     8    9    9   12   14   16   20   23   28   32   34   35   38   40   43   47   49   51   53   55 
LCS_GDT     E      93     E      93     10   22   40     8    9    9   12   16   21   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     E      94     E      94     10   27   40     8    9    9   12   16   23   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     V      95     V      95     10   27   40     8    9   11   15   23   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     E      96     E      96     10   27   40     8    9   11   17   23   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     T      97     T      97     10   27   40     8   10   18   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     L      98     L      98     17   27   40     8    9   13   21   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     A      99     A      99     21   27   40     9   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     R     100     R     100     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     P     101     P     101     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     C     102     C     102     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     L     103     L     103     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     N     104     N     104     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     M     105     M     105     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     L     106     L     106     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     N     107     N     107     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     R     108     R     108     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     L     109     L     109     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     T     110     T     110     21   27   40    11   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     Y     111     Y     111     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     E     112     E     112     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     V     113     V     113     21   27   40     9   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     T     114     T     114     21   27   40     7   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     E     115     E     115     21   27   40     7   15   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     I     116     I     116     21   27   40    13   17   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     A     117     A     117     21   27   40     4   15   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     L     118     L     118     21   27   40     6   16   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     D     119     D     119     21   27   40     4    7   22   23   25   26   29   30   32   35   36   37   39   40   43   47   49   51   53   55 
LCS_GDT     L     120     L     120     21   27   40     4    4    6   23   25   26   28   30   32   35   36   37   39   40   43   46   49   51   53   55 
LCS_GDT     P     121     P     121      4    7   40     3    3    5    5    6    7    8    9   10   14   23   33   36   40   42   44   47   51   53   54 
LCS_GDT     G     122     G     122      4    7   40     3    3    5    5    6    7    8    9    9   10   11   11   15   18   19   22   26   29   32   40 
LCS_GDT     I     123     I     123      4    7   34     3    3    5    5    6    7    8    9    9   10   11   11   15   15   19   22   26   29   32   37 
LCS_GDT     N     124     N     124      4    7   15     3    4    4    5    6    7    8    9    9   10   11   11   15   15   16   22   26   27   29   34 
LCS_GDT     L     125     L     125      4    7   15     3    4    5    5    6    7    8    9    9   10   11   11   15   15   16   22   26   27   29   34 
LCS_GDT     E     126     E     126      4    7   15     3    4    5    5    6    7    8    9    9   10   11   11   18   19   20   22   26   27   29   34 
LCS_GDT     F     127     F     127      4    5   15     3    4    4    5    5    6    6    7    8   12   14   16   18   19   20   22   26   27   29   34 
LCS_AVERAGE  LCS_A:  13.28  (   6.15    9.38   24.29 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     17     22     23     25     26     29     30     32     35     36     37     39     40     43     47     49     51     53     55 
GDT PERCENT_CA  10.40  13.60  17.60  18.40  20.00  20.80  23.20  24.00  25.60  28.00  28.80  29.60  31.20  32.00  34.40  37.60  39.20  40.80  42.40  44.00
GDT RMS_LOCAL    0.30   0.58   0.87   1.03   1.30   1.42   2.11   2.16   2.37   2.87   3.01   3.11   3.67   3.64   5.09   5.32   5.42   5.57   5.76   6.01
GDT RMS_ALL_CA  22.47  22.63  22.75  22.83  22.81  23.04  22.97  22.94  22.98  22.98  22.97  23.03  22.97  22.83  23.05  23.10  23.12  23.11  23.02  22.88

#      Molecule1      Molecule2       DISTANCE
LGA    A       3      A       3         45.016
LGA    M       4      M       4         39.053
LGA    N       5      N       5         36.305
LGA    L       6      L       6         30.591
LGA    K       7      K       7         26.851
LGA    R       8      R       8         20.068
LGA    E       9      E       9         16.756
LGA    Q      10      Q      10         12.289
LGA    E      11      E      11          9.097
LGA    F      12      F      12          3.349
LGA    V      13      V      13          6.319
LGA    S      14      S      14          7.277
LGA    Q      15      Q      15         12.931
LGA    Y      16      Y      16         17.221
LGA    H      17      H      17         23.182
LGA    F      18      F      18         28.655
LGA    D      19      D      19         34.651
LGA    A      20      A      20         39.412
LGA    R      21      R      21         40.175
LGA    N      22      N      22         38.719
LGA    F      23      F      23         39.113
LGA    E      24      E      24         43.755
LGA    W      25      W      25         38.902
LGA    E      26      E      26         37.043
LGA    N      27      N      27         44.301
LGA    E      28      E      28         45.958
LGA    N      29      N      29         45.246
LGA    G      30      G      30         44.279
LGA    A      31      A      31         38.378
LGA    P      32      P      32         33.595
LGA    E      33      E      33         29.983
LGA    T      34      T      34         24.351
LGA    K      35      K      35         21.258
LGA    V      36      V      36         15.728
LGA    D      37      D      37         13.458
LGA    V      38      V      38         11.559
LGA    N      39      N      39         12.592
LGA    F      40      F      40         16.392
LGA    Q      41      Q      41         20.602
LGA    L      42      L      42         23.764
LGA    L      43      L      43         29.275
LGA    Q      44      Q      44         35.853
LGA    H      45      H      45         41.170
LGA    D      46      D      46         43.107
LGA    Q      47      Q      47         42.107
LGA    E      48      E      48         43.328
LGA    N      49      N      49         44.668
LGA    Q      50      Q      50         41.034
LGA    V      51      V      51         36.732
LGA    T      52      T      52         30.000
LGA    S      53      S      53         26.144
LGA    L      54      L      54         19.620
LGA    I      55      I      55         13.296
LGA    V      56      V      56         10.504
LGA    I      57      I      57          3.770
LGA    L      58      L      58          4.801
LGA    S      59      S      59          8.555
LGA    F      60      F      60         13.762
LGA    M      61      M      61         16.373
LGA    I      62      I      62         18.019
LGA    V      63      V      63         24.181
LGA    F      64      F      64         25.939
LGA    D      65      D      65         31.117
LGA    K      66      K      66         28.470
LGA    F      67      F      67         23.220
LGA    V      68      V      68         19.885
LGA    I      69      I      69         13.675
LGA    S      70      S      70         11.759
LGA    G      71      G      71          6.124
LGA    T      72      T      72          9.139
LGA    I      73      I      73          8.953
LGA    S      74      S      74         12.187
LGA    Q      75      Q      75         13.635
LGA    V      76      V      76         13.412
LGA    N      77      N      77         13.545
LGA    H      78      H      78         16.264
LGA    I      79      I      79         17.903
LGA    D      80      D      80         22.605
LGA    G      81      G      81         24.551
LGA    R      82      R      82         18.067
LGA    I      83      I      83         14.954
LGA    V      84      V      84          8.832
LGA    N      85      N      85          9.284
LGA    E      86      E      86          9.276
LGA    P      87      P      87         11.586
LGA    S      88      S      88          8.536
LGA    E      89      E      89          8.090
LGA    L      90      L      90          4.722
LGA    N      91      N      91          3.487
LGA    Q      92      Q      92          6.724
LGA    E      93      E      93          4.402
LGA    E      94      E      94          3.841
LGA    V      95      V      95          3.154
LGA    E      96      E      96          2.530
LGA    T      97      T      97          0.326
LGA    L      98      L      98          1.740
LGA    A      99      A      99          2.037
LGA    R     100      R     100          3.234
LGA    P     101      P     101          3.144
LGA    C     102      C     102          2.075
LGA    L     103      L     103          1.958
LGA    N     104      N     104          2.340
LGA    M     105      M     105          1.864
LGA    L     106      L     106          0.772
LGA    N     107      N     107          1.228
LGA    R     108      R     108          1.164
LGA    L     109      L     109          1.040
LGA    T     110      T     110          0.468
LGA    Y     111      Y     111          0.168
LGA    E     112      E     112          1.086
LGA    V     113      V     113          0.543
LGA    T     114      T     114          1.110
LGA    E     115      E     115          2.015
LGA    I     116      I     116          1.882
LGA    A     117      A     117          1.089
LGA    L     118      L     118          0.596
LGA    D     119      D     119          1.560
LGA    L     120      L     120          3.348
LGA    P     121      P     121          9.525
LGA    G     122      G     122         15.530
LGA    I     123      I     123         18.450
LGA    N     124      N     124         25.059
LGA    L     125      L     125         26.905
LGA    E     126      E     126         32.082
LGA    F     127      F     127         32.622

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  125    4.0     30    2.16    23.400    20.114     1.328

LGA_LOCAL      RMSD =  2.159  Number of atoms =   30  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.976  Number of atoms =  125 
Std_ALL_ATOMS  RMSD = 15.390  (standard rmsd on all 125 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.465686 * X  +  -0.105161 * Y  +   0.878679 * Z  +  10.856625
  Y_new =  -0.534695 * X  +   0.824616 * Y  +  -0.184689 * Z  +  28.404959
  Z_new =  -0.705151 * X  +  -0.555833 * Y  +  -0.440241 * Z  +   7.052801 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.240664    0.900929  [ DEG:  -128.3806     51.6194 ]
  Theta =   0.782636    2.358957  [ DEG:    44.8417    135.1583 ]
  Phi   =  -2.287321    0.854272  [ DEG:  -131.0538     48.9462 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS168_1                                  
REMARK     2: T0383.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0383TS168_1.T0383.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  125   4.0   30   2.16  20.114    15.39
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS168_1
PFRMAT TS
TARGET T0383
MODEL 1
PARENT N/A
ATOM      1  CA  SER     1       2.769  12.894 -10.403  1.00 25.00           C
ATOM      2  CA  ASN     2       1.539  16.517 -10.102  1.00 25.00           C
ATOM      3  CA  ALA     3       0.944  16.875  -6.391  1.00 25.00           C
ATOM      4  CA  MET     4       2.934  18.087  -3.340  1.00 25.00           C
ATOM      5  CA  ASN     5       2.595  20.422  -0.286  1.00 25.00           C
ATOM      6  CA  LEU     6       5.917  22.347  -0.455  1.00 25.00           C
ATOM      7  CA  LYS     7       5.058  23.787   2.992  1.00 25.00           C
ATOM      8  CA  ARG     8       5.168  25.421   6.401  1.00 25.00           C
ATOM      9  CA  GLU     9       5.201  22.598   8.960  1.00 25.00           C
ATOM     10  CA  GLN    10       6.543  20.736  12.023  1.00 25.00           C
ATOM     11  CA  GLU    11       7.683  20.973  15.672  1.00 25.00           C
ATOM     12  CA  PHE    12       9.085  24.479  15.033  1.00 25.00           C
ATOM     13  CA  VAL    13       5.778  25.534  13.416  1.00 25.00           C
ATOM     14  CA  SER    14       3.843  24.171  16.427  1.00 25.00           C
ATOM     15  CA  GLN    15       6.141  26.099  18.808  1.00 25.00           C
ATOM     16  CA  TYR    16       7.063  22.755  20.356  1.00 25.00           C
ATOM     17  CA  HIS    17       4.163  23.338  22.806  1.00 25.00           C
ATOM     18  CA  PHE    18       6.678  25.287  24.918  1.00 25.00           C
ATOM     19  CA  ASP    19       5.444  26.684  28.230  1.00 25.00           C
ATOM     20  CA  ALA    20       9.075  26.673  29.192  1.00 25.00           C
ATOM     21  CA  ARG    21      12.670  26.775  28.069  1.00 25.00           C
ATOM     22  CA  ASN    22      11.656  26.802  24.401  1.00 25.00           C
ATOM     23  CA  PHE    23      11.940  24.231  21.611  1.00 25.00           C
ATOM     24  CA  GLU    24      14.979  22.523  23.199  1.00 25.00           C
ATOM     25  CA  TRP    25      16.443  21.845  19.726  1.00 25.00           C
ATOM     26  CA  GLU    26      15.909  25.511  18.757  1.00 25.00           C
ATOM     27  CA  ASN    27      17.643  26.641  21.980  1.00 25.00           C
ATOM     28  CA  GLU    28      20.589  24.306  21.243  1.00 25.00           C
ATOM     29  CA  ASN    29      20.742  21.360  23.567  1.00 25.00           C
ATOM     30  CA  GLY    30      20.731  18.064  21.586  1.00 25.00           C
ATOM     31  CA  ALA    31      20.324  19.067  17.912  1.00 25.00           C
ATOM     32  CA  PRO    32      21.925  18.953  14.415  1.00 25.00           C
ATOM     33  CA  GLU    33      21.273  22.359  12.923  1.00 25.00           C
ATOM     34  CA  THR    34      18.172  21.525  10.781  1.00 25.00           C
ATOM     35  CA  LYS    35      16.870  21.501   7.173  1.00 25.00           C
ATOM     36  CA  VAL    36      16.652  25.239   7.344  1.00 25.00           C
ATOM     37  CA  ASP    37      13.039  26.417   6.742  1.00 25.00           C
ATOM     38  CA  VAL    38       9.647  26.466   8.460  1.00 25.00           C
ATOM     39  CA  ASN    39       8.070  28.022   5.367  1.00 25.00           C
ATOM     40  CA  PHE    40       5.866  29.100   2.535  1.00 25.00           C
ATOM     41  CA  GLN    41       5.826  31.243  -0.585  1.00 25.00           C
ATOM     42  CA  LEU    42       2.633  33.345  -0.334  1.00 25.00           C
ATOM     43  CA  LEU    43       3.638  35.094  -3.580  1.00 25.00           C
ATOM     44  CA  GLN    44       1.512  36.237  -6.593  1.00 25.00           C
ATOM     45  CA  HIS    45      -0.498  37.164  -9.698  1.00 25.00           C
ATOM     46  CA  ASP    46      -3.671  36.878  -7.617  1.00 25.00           C
ATOM     47  CA  GLN    47      -4.935  37.671  -4.090  1.00 25.00           C
ATOM     48  CA  GLU    48      -1.361  38.455  -2.959  1.00 25.00           C
ATOM     49  CA  ASN    49      -0.887  40.764  -5.978  1.00 25.00           C
ATOM     50  CA  GLN    50       1.247  43.864  -5.600  1.00 25.00           C
ATOM     51  CA  VAL    51       4.627  42.260  -4.836  1.00 25.00           C
ATOM     52  CA  THR    52       4.329  40.669  -1.410  1.00 25.00           C
ATOM     53  CA  SER    53       6.125  37.821   0.397  1.00 25.00           C
ATOM     54  CA  LEU    54       6.210  35.028   3.047  1.00 25.00           C
ATOM     55  CA  ILE    55       5.526  32.920   6.181  1.00 25.00           C
ATOM     56  CA  VAL    56       3.222  30.537   8.067  1.00 25.00           C
ATOM     57  CA  ILE    57       6.288  30.146  10.351  1.00 25.00           C
ATOM     58  CA  LEU    58       9.199  29.529  12.721  1.00 25.00           C
ATOM     59  CA  SER    59      12.673  29.313  11.171  1.00 25.00           C
ATOM     60  CA  PHE    60      15.299  26.785  12.153  1.00 25.00           C
ATOM     61  CA  MET    61      12.954  23.909  11.526  1.00 25.00           C
ATOM     62  CA  ILE    62      12.039  20.844   9.494  1.00 25.00           C
ATOM     63  CA  VAL    63      11.837  17.395  11.005  1.00 25.00           C
ATOM     64  CA  PHE    64       9.753  14.639   9.322  1.00 25.00           C
ATOM     65  CA  ASP    65       9.377  10.821   9.240  1.00 25.00           C
ATOM     66  CA  LYS    66      10.621   8.312   6.664  1.00 25.00           C
ATOM     67  CA  PHE    67      13.417  10.599   5.384  1.00 25.00           C
ATOM     68  CA  VAL    68      13.875  14.351   5.867  1.00 25.00           C
ATOM     69  CA  ILE    69      11.910  17.509   5.218  1.00 25.00           C
ATOM     70  CA  SER    70       8.426  18.551   6.490  1.00 25.00           C
ATOM     71  CA  GLY    71       9.044  22.199   5.635  1.00 25.00           C
ATOM     72  CA  THR    72      12.376  22.268   3.795  1.00 25.00           C
ATOM     73  CA  ILE    73      10.587  24.917   1.641  1.00 25.00           C
ATOM     74  CA  SER    74      11.287  28.662   1.585  1.00 25.00           C
ATOM     75  CA  GLN    75      10.521  31.864   3.455  1.00 25.00           C
ATOM     76  CA  VAL    76      10.531  31.710   7.242  1.00 25.00           C
ATOM     77  CA  ASN    77       9.720  35.015   8.915  1.00 25.00           C
ATOM     78  CA  HIS    78       6.446  35.499  10.744  1.00 25.00           C
ATOM     79  CA  ILE    79       2.897  36.487  11.729  1.00 25.00           C
ATOM     80  CA  ASP    80      -0.397  35.625  13.363  1.00 25.00           C
ATOM     81  CA  GLY    81      -2.677  38.567  14.360  1.00 25.00           C
ATOM     82  CA  ARG    82      -0.035  40.700  16.047  1.00 25.00           C
ATOM     83  CA  ILE    83       3.757  40.714  15.436  1.00 25.00           C
ATOM     84  CA  VAL    84       3.598  43.549  18.028  1.00 25.00           C
ATOM     85  CA  ASN    85       1.146  46.374  18.510  1.00 25.00           C
ATOM     86  CA  GLU    86       1.524  49.884  17.022  1.00 25.00           C
ATOM     87  CA  PRO    87       3.963  52.759  17.115  1.00 25.00           C
ATOM     88  CA  SER    88       7.572  52.238  18.134  1.00 25.00           C
ATOM     89  CA  GLU    89       9.452  51.332  14.934  1.00 25.00           C
ATOM     90  CA  LEU    90       8.867  47.543  15.055  1.00 25.00           C
ATOM     91  CA  ASN    91       8.611  45.307  18.153  1.00 25.00           C
ATOM     92  CA  GLN    92      12.031  45.126  19.817  1.00 25.00           C
ATOM     93  CA  GLU    93      15.710  44.862  18.788  1.00 25.00           C
ATOM     94  CA  GLU    94      15.767  41.181  19.844  1.00 25.00           C
ATOM     95  CA  VAL    95      12.591  40.522  17.809  1.00 25.00           C
ATOM     96  CA  GLU    96      14.160  42.231  14.762  1.00 25.00           C
ATOM     97  CA  THR    97      17.314  40.095  15.158  1.00 25.00           C
ATOM     98  CA  LEU    98      15.172  36.927  15.369  1.00 25.00           C
ATOM     99  CA  ALA    99      13.285  37.962  12.202  1.00 25.00           C
ATOM    100  CA  ARG   100      16.605  38.570  10.391  1.00 25.00           C
ATOM    101  CA  PRO   101      17.862  35.123  11.489  1.00 25.00           C
ATOM    102  CA  CYS   102      14.629  33.512  10.220  1.00 25.00           C
ATOM    103  CA  LEU   103      15.017  35.316   6.865  1.00 25.00           C
ATOM    104  CA  ASN   104      18.639  34.100   6.601  1.00 25.00           C
ATOM    105  CA  MET   105      17.516  30.517   7.350  1.00 25.00           C
ATOM    106  CA  LEU   106      14.806  30.777   4.655  1.00 25.00           C
ATOM    107  CA  ASN   107      17.394  32.069   2.145  1.00 25.00           C
ATOM    108  CA  ARG   108      19.727  29.159   3.014  1.00 25.00           C
ATOM    109  CA  LEU   109      16.852  26.677   2.525  1.00 25.00           C
ATOM    110  CA  THR   110      16.040  28.247  -0.873  1.00 25.00           C
ATOM    111  CA  TYR   111      19.719  27.984  -1.901  1.00 25.00           C
ATOM    112  CA  GLU   112      19.776  24.303  -0.845  1.00 25.00           C
ATOM    113  CA  VAL   113      16.600  23.644  -2.881  1.00 25.00           C
ATOM    114  CA  THR   114      18.169  25.353  -5.928  1.00 25.00           C
ATOM    115  CA  GLU   115      21.323  23.217  -5.532  1.00 25.00           C
ATOM    116  CA  ILE   116      19.181  20.049  -5.320  1.00 25.00           C
ATOM    117  CA  ALA   117      17.294  21.084  -8.488  1.00 25.00           C
ATOM    118  CA  LEU   118      17.675  23.438 -11.473  1.00 25.00           C
ATOM    119  CA  ASP   119      20.427  21.035 -12.722  1.00 25.00           C
ATOM    120  CA  LEU   120      23.186  23.502 -13.669  1.00 25.00           C
ATOM    121  CA  PRO   121      25.459  21.617 -16.096  1.00 25.00           C
ATOM    122  CA  GLY   122      25.158  17.991 -17.204  1.00 25.00           C
ATOM    123  CA  ILE   123      22.053  16.176 -15.968  1.00 25.00           C
ATOM    124  CA  ASN   124      20.990  12.641 -16.747  1.00 25.00           C
ATOM    125  CA  LEU   125      19.948  11.359 -13.369  1.00 25.00           C
ATOM    126  CA  GLU   126      22.620   8.611 -12.986  1.00 25.00           C
ATOM    127  CA  PHE   127      21.507   8.252  -9.317  1.00 25.00           C
TER
END
