
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  147 (  147),  selected  140 , name T0373TS168_4
# Molecule2: number of CA atoms  140 ( 1047),  selected  140 , name T0373.pdb
# PARAMETERS: T0373TS168_4.T0373.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    60        32 - 95          4.97    26.42
  LCS_AVERAGE:     37.07

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30         2 - 31          1.98    14.71
  LONGEST_CONTINUOUS_SEGMENT:    30        95 - 124         1.93    13.46
  LONGEST_CONTINUOUS_SEGMENT:    30        96 - 125         1.96    15.02
  LCS_AVERAGE:     15.47

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         4 - 29          1.00    17.25
  LONGEST_CONTINUOUS_SEGMENT:    26        97 - 122         0.90    11.64
  LCS_AVERAGE:     12.02

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     P       2     P       2      4   30   38     0    4    7   12   29   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     T       3     T       3     25   30   38     3    4   15   26   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     N       4     N       4     26   30   38    10   23   25   27   30   34   38   40   47   55   63   70   76   81   86   91   93   96  100  107 
LCS_GDT     Q       5     Q       5     26   30   38    11   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     D       6     D       6     26   30   38    11   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L       7     L       7     26   30   38    10   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     Q       8     Q       8     26   30   38    12   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L       9     L       9     26   30   38    11   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A      10     A      10     26   30   38    11   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A      11     A      11     26   30   38    11   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     H      12     H      12     26   30   38    12   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L      13     L      13     26   30   38    11   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     R      14     R      14     26   30   38    11   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     S      15     S      15     26   30   38    12   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     Q      16     Q      16     26   30   38    12   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     V      17     V      17     26   30   38    12   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     T      18     T      18     26   30   38    12   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     T      19     T      19     26   30   38    12   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L      20     L      20     26   30   38    12   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     T      21     T      21     26   30   38    12   23   25   27   30   34   38   40   41   48   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     R      22     R      22     26   30   38    12   23   25   27   30   34   38   40   41   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     R      23     R      23     26   30   38    12   23   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L      24     L      24     26   30   38    12   23   25   27   30   34   38   40   41   49   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     R      25     R      25     26   30   38    12   23   25   27   30   34   38   40   41   44   49   61   73   80   85   91   93   96  102  107 
LCS_GDT     R      26     R      26     26   30   38    12   22   25   27   30   34   38   40   41   44   60   68   74   81   86   91   93   96  102  107 
LCS_GDT     E      27     E      27     26   30   38    12   23   25   27   30   34   38   40   41   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A      28     A      28     26   30   38     3    4    5   11   23   31   36   39   40   43   48   54   58   63   75   79   87   92   97  101 
LCS_GDT     Q      29     Q      29     26   30   38     1   15   25   27   30   34   38   40   41   44   49   58   73   80   82   91   93   96  102  107 
LCS_GDT     A      30     A      30      4   30   38     3    4    5    6   10   24   32   39   41   44   52   64   73   80   84   91   93   96  102  107 
LCS_GDT     D      31     D      31      4   30   57     3    4    5    6   13   27   29   37   46   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     P      32     P      32      3    6   60     3    3    8   23   26   28   31   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     V      33     V      33      3   14   60     3    3    8   11   15   26   28   38   45   53   62   71   76   81   86   91   93   96  102  107 
LCS_GDT     Q      34     Q      34      3   14   60     3    3   21   26   28   29   32   35   45   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     F      35     F      35     12   14   60    12   12   12   12   14   29   32   40   41   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     S      36     S      36     12   14   60    12   12   12   15   28   29   32   33   37   44   48   52   66   76   85   91   93   96  102  107 
LCS_GDT     Q      37     Q      37     12   14   60    12   12   12   12   15   22   29   35   40   44   48   51   52   60   66   73   75   88   93  105 
LCS_GDT     L      38     L      38     12   14   60    12   12   12   12   18   25   29   35   40   44   48   51   58   61   69   81   87   95  102  107 
LCS_GDT     V      39     V      39     12   14   60    12   12   12   13   27   29   32   33   37   44   52   65   74   80   86   91   93   96  102  107 
LCS_GDT     V      40     V      40     12   14   60    12   12   12   12   12   13   19   28   38   44   48   51   52   56   66   73   77   88   93  105 
LCS_GDT     L      41     L      41     12   14   60    12   12   12   12   18   25   29   35   40   44   48   51   52   54   62   67   74   80   85   91 
LCS_GDT     G      42     G      42     12   14   60    12   12   12   12   14   18   24   33   38   44   48   51   52   61   67   79   85   92  101  107 
LCS_GDT     A      43     A      43     12   14   60    12   12   12   12   12   16   21   32   37   44   48   51   58   66   70   81   88   95  102  107 
LCS_GDT     I      44     I      44     12   14   60    12   12   12   12   12   17   27   34   40   44   48   51   52   54   59   64   72   75   81   86 
LCS_GDT     D      45     D      45     12   14   60    12   12   12   12   18   25   29   35   40   44   48   51   52   54   62   67   73   80   85   87 
LCS_GDT     R      46     R      46     12   14   60    12   12   12   12   17   19   26   30   37   44   48   51   52   61   69   76   83   92   99  106 
LCS_GDT     L      47     L      47      3   14   60     3    9   10   13   19   25   29   35   40   44   48   51   52   66   69   76   83   92   99  106 
LCS_GDT     G      48     G      48      3   14   60     3    3    6   12   18   25   28   35   39   44   48   51   52   54   62   67   74   80   85   87 
LCS_GDT     G      49     G      49      3    9   60     3    3    5    7   12   13   14   16   26   30   39   42   49   54   62   66   73   79   85   87 
LCS_GDT     D      50     D      50      3   12   60     3    3    5    7   12   13   27   31   35   39   48   50   52   56   66   73   77   88   92  101 
LCS_GDT     V      51     V      51      5   14   60     3    6    9   13   28   29   29   35   40   44   48   51   60   66   74   79   88   95  102  107 
LCS_GDT     T      52     T      52     10   14   60     3    4    9   13   19   25   29   35   40   44   48   51   52   64   73   79   88   95  102  107 
LCS_GDT     P      53     P      53     10   14   60     7    9   10   13   18   25   29   35   40   44   48   51   58   74   81   87   93   96  102  107 
LCS_GDT     S      54     S      54     10   14   60     7    9   10   14   19   25   29   35   40   44   48   60   76   81   86   91   93   96  102  107 
LCS_GDT     E      55     E      55     10   14   60     7    9   10   14   19   25   30   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L      56     L      56     10   14   60     7    9   10   14   19   25   29   35   43   53   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A      57     A      57     10   14   60     7    9   10   14   19   25   29   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A      58     A      58     10   14   60     7    9   10   15   24   31   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A      59     A      59     10   14   60     7    9   10   14   19   25   31   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     E      60     E      60     10   14   60     7    9   10   14   19   27   32   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     R      61     R      61     10   14   60     3    9   18   26   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     M      62     M      62      4   17   60     1    6   15   26   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     R      63     R      63     15   17   60     1   10   15   17   24   27   29   35   47   54   61   70   76   81   86   91   93   96  102  107 
LCS_GDT     S      64     S      64     15   17   60    11   13   15   15   19   24   28   35   40   44   48   56   74   81   86   91   93   96  102  107 
LCS_GDT     S      65     S      65     15   17   60    11   13   15   15   16   22   25   33   36   41   46   50   52   54   55   76   93   95  102  107 
LCS_GDT     N      66     N      66     15   17   60    11   13   15   15   16   22   28   34   38   42   48   59   71   78   86   91   93   96  102  107 
LCS_GDT     L      67     L      67     15   17   60    11   13   15   15   19   25   29   35   40   44   48   59   74   81   86   91   93   96  102  107 
LCS_GDT     A      68     A      68     15   17   60    11   13   15   15   19   24   29   35   40   44   48   51   52   54   55   61   73   85  101  107 
LCS_GDT     A      69     A      69     15   17   60    11   13   15   15   18   24   28   35   40   42   48   51   52   54   55   63   73   85   95  106 
LCS_GDT     L      70     L      70     15   17   60    11   13   15   15   19   25   29   35   40   44   48   51   52   56   69   78   88   95  102  107 
LCS_GDT     L      71     L      71     15   17   60    11   13   15   15   18   25   29   35   40   44   48   51   52   54   56   63   77   86  101  106 
LCS_GDT     R      72     R      72     15   17   60    11   13   15   15   19   24   29   35   40   44   48   51   52   54   55   56   59   62   64   72 
LCS_GDT     E      73     E      73     15   17   60    11   13   15   15   19   25   29   35   40   44   48   51   52   54   55   56   59   62   64   72 
LCS_GDT     L      74     L      74     15   17   60    11   13   15   15   18   24   29   35   40   44   48   51   52   54   55   56   59   62   74   86 
LCS_GDT     E      75     E      75     15   17   60     9   13   15   15   18   22   28   35   40   44   48   51   52   54   55   56   59   62   64   67 
LCS_GDT     R      76     R      76     15   17   60     9   13   15   15   19   25   29   35   40   44   48   51   52   54   55   56   59   61   64   66 
LCS_GDT     G      77     G      77     15   17   60     3   11   15   15   19   25   29   35   40   44   48   51   52   54   55   56   59   62   64   67 
LCS_GDT     G      78     G      78      6   17   60     5    5    7   12   19   25   29   35   40   44   48   51   52   54   55   56   59   62   64   67 
LCS_GDT     L      79     L      79      6    8   60     5    6    9   13   19   25   29   35   40   44   48   51   52   54   55   56   59   62   64   67 
LCS_GDT     I      80     I      80      6    8   60     5    6    9   13   19   25   29   35   40   44   48   51   52   54   55   56   59   62   64   67 
LCS_GDT     V      81     V      81      6    8   60     5    6    8   12   18   25   29   35   40   44   48   51   52   54   55   56   59   62   64   67 
LCS_GDT     R      82     R      82      6    8   60     5    5    7   10   12   18   24   30   39   44   48   51   52   54   55   56   59   62   64   67 
LCS_GDT     H      83     H      83      4    8   60     3    4    7   10   18   25   29   35   40   44   48   51   52   54   55   56   59   62   64   67 
LCS_GDT     A      84     A      84      4    8   60     3    6    9   12   19   25   29   35   40   44   48   51   52   54   55   56   59   62   64   67 
LCS_GDT     D      85     D      85      4    7   60     0    4    5    6   15   23   29   35   40   44   48   51   52   54   55   56   59   62   64   67 
LCS_GDT     P      86     P      86      4    7   60     1    4    5    6    6   20   28   33   40   42   47   51   52   54   55   56   59   61   64   67 
LCS_GDT     R      91     R      91      4    7   60     0    3    5    6    8    9   11   14   15   16   18   19   22   27   30   31   32   41   44   47 
LCS_GDT     T      92     T      92      4    7   60     3    3    5    6    8    9   11   14   15   16   23   38   50   52   54   56   57   59   61   64 
LCS_GDT     R      93     R      93      4    7   60     3    3    5    6    8    9   11   29   34   40   46   51   52   54   55   56   59   62   64   68 
LCS_GDT     V      94     V      94      4    7   60     3    4    5    6   12   17   27   35   40   44   48   51   52   54   56   64   73   81   92  101 
LCS_GDT     S      95     S      95      4   30   60     3    3    5    7   10   12   19   30   34   36   39   44   52   66   73   81   88   95  102  107 
LCS_GDT     L      96     L      96     24   30   57     3    9   17   26   27   28   31   33   37   40   47   56   70   77   85   91   93   96  102  107 
LCS_GDT     S      97     S      97     26   30   50     3   12   26   26   28   29   32   33   37   42   48   56   66   76   83   89   93   96  102  107 
LCS_GDT     S      98     S      98     26   30   50     8   18   26   26   28   29   32   33   38   44   50   59   70   77   85   90   93   96  102  107 
LCS_GDT     E      99     E      99     26   30   50     8   24   26   26   28   29   32   35   40   53   59   70   76   81   86   91   93   96  102  107 
LCS_GDT     G     100     G     100     26   30   50     8   24   26   26   28   29   32   35   44   53   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     R     101     R     101     26   30   50     8   24   26   26   28   29   32   35   40   53   60   71   76   81   86   91   93   96  102  107 
LCS_GDT     R     102     R     102     26   30   50     8   24   26   26   28   29   32   35   43   53   62   71   76   81   86   91   93   96  102  107 
LCS_GDT     N     103     N     103     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L     104     L     104     26   30   50     9   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     Y     105     Y     105     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     G     106     G     106     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     N     107     N     107     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     R     108     R     108     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A     109     A     109     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     K     110     K     110     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     R     111     R     111     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     E     112     E     112     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     E     113     E     113     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     W     114     W     114     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L     115     L     115     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     V     116     V     116     26   30   50    14   24   26   26   28   29   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     R     117     R     117     26   30   50    12   24   26   26   28   29   32   37   44   54   62   71   76   81   86   91   93   96  102  107 
LCS_GDT     A     118     A     118     26   30   50    14   24   26   26   28   29   32   35   43   53   62   71   76   81   86   91   93   96  102  107 
LCS_GDT     M     119     M     119     26   30   50    12   24   26   26   28   29   32   35   41   49   58   71   76   81   86   91   93   96  102  107 
LCS_GDT     H     120     H     120     26   30   50    11   24   26   26   28   29   32   35   41   49   58   66   76   81   86   91   93   96  102  107 
LCS_GDT     A     121     A     121     26   30   50    12   24   26   26   28   29   32   35   41   49   55   62   72   80   86   91   93   96  102  107 
LCS_GDT     C     122     C     122     26   30   50    12   24   26   26   28   29   32   33   39   49   54   61   70   80   86   91   93   96  102  107 
LCS_GDT     L     123     L     123      5   30   50     3    3   10   23   26   28   32   37   46   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     D     124     D     124      5   30   50     0    4    7   12   29   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     E     125     E     125     19   30   50    10   13   18   26   30   34   38   40   41   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     S     126     S     126     19   21   50    10   13   18   19   19   20   23   25   27   34   46   49   58   66   79   88   92   96   99  107 
LCS_GDT     E     127     E     127     19   21   50    10   13   18   19   19   20   23   33   37   43   46   61   73   80   86   91   93   96  102  107 
LCS_GDT     R     128     R     128     19   21   50    10   18   20   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A     129     A     129     19   21   50    10   13   18   26   30   34   38   40   43   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L     130     L     130     19   21   50    10   13   18   19   19   33   37   40   41   44   55   68   75   81   86   91   93   96  102  107 
LCS_GDT     L     131     L     131     19   21   50    10   13   18   20   29   33   37   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A     132     A     132     19   21   50    10   13   18   19   25   31   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A     133     A     133     19   21   50    10   11   18   19   28   33   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A     134     A     134     19   21   50    10   18   25   27   30   34   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     G     135     G     135     19   21   50     7   13   18   19   21   27   31   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     P     136     P     136     19   21   50     8   14   18   21   27   27   32   39   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L     137     L     137     19   21   50     8   13   18   19   24   31   38   40   48   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L     138     L     138     19   21   50     8   13   18   19   19   24   29   34   47   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     T     139     T     139     19   21   50     8   13   18   19   19   24   29   34   39   47   55   64   75   81   86   91   93   96  102  107 
LCS_GDT     R     140     R     140     19   21   50     8   13   18   19   21   25   29   35   44   55   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     L     141     L     141     19   21   50     8   13   18   19   19   24   29   34   40   54   63   71   76   81   86   91   93   96  102  107 
LCS_GDT     A     142     A     142     19   21   50     8   13   18   19   19   20   26   32   36   40   46   51   57   63   77   85   92   96  102  107 
LCS_GDT     Q     143     Q     143     19   21   50     8   13   18   19   19   20   26   32   36   40   47   51   60   66   81   87   93   96  102  107 
LCS_GDT     F     144     F     144      3   21   50     3    3    3   12   18   20   20   23   36   37   46   49   57   61   68   79   86   96  101  107 
LCS_GDT     E     145     E     145      3   19   50     3    3    3    5    8   11   13   16   17   20   22   23   40   47   55   64   73   81   87   94 
LCS_AVERAGE  LCS_A:  21.52  (  12.02   15.47   37.07 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     24     26     27     30     34     38     40     48     55     63     71     76     81     86     91     93     96    102    107 
GDT PERCENT_CA  10.00  17.14  18.57  19.29  21.43  24.29  27.14  28.57  34.29  39.29  45.00  50.71  54.29  57.86  61.43  65.00  66.43  68.57  72.86  76.43
GDT RMS_LOCAL    0.28   0.70   0.90   0.97   1.30   1.63   2.01   2.12   3.25   3.55   3.90   4.20   4.37   4.58   4.82   5.11   5.23   5.40   5.94   6.18
GDT RMS_ALL_CA  10.94  11.31  11.64  15.65  14.87  14.35  13.70  13.80  11.69  11.68  11.54  11.33  11.33  11.29  11.25  11.20  11.10  11.02  10.67  10.66

#      Molecule1      Molecule2       DISTANCE
LGA    P       2      P       2          2.380
LGA    T       3      T       3          1.469
LGA    N       4      N       4          2.030
LGA    Q       5      Q       5          1.764
LGA    D       6      D       6          1.739
LGA    L       7      L       7          1.657
LGA    Q       8      Q       8          1.296
LGA    L       9      L       9          1.242
LGA    A      10      A      10          1.104
LGA    A      11      A      11          0.950
LGA    H      12      H      12          1.112
LGA    L      13      L      13          1.323
LGA    R      14      R      14          1.029
LGA    S      15      S      15          0.746
LGA    Q      16      Q      16          1.083
LGA    V      17      V      17          1.828
LGA    T      18      T      18          2.095
LGA    T      19      T      19          1.523
LGA    L      20      L      20          1.181
LGA    T      21      T      21          2.319
LGA    R      22      R      22          2.537
LGA    R      23      R      23          1.392
LGA    L      24      L      24          1.360
LGA    R      25      R      25          3.107
LGA    R      26      R      26          3.001
LGA    E      27      E      27          0.906
LGA    A      28      A      28          4.885
LGA    Q      29      Q      29          2.120
LGA    A      30      A      30          5.142
LGA    D      31      D      31          5.618
LGA    P      32      P      32          7.348
LGA    V      33      V      33          9.827
LGA    Q      34      Q      34          6.989
LGA    F      35      F      35          5.389
LGA    S      36      S      36          9.972
LGA    Q      37      Q      37         13.728
LGA    L      38      L      38         11.202
LGA    V      39      V      39          8.860
LGA    V      40      V      40         15.257
LGA    L      41      L      41         17.416
LGA    G      42      G      42         13.275
LGA    A      43      A      43         14.451
LGA    I      44      I      44         20.895
LGA    D      45      D      45         20.370
LGA    R      46      R      46         15.958
LGA    L      47      L      47         17.315
LGA    G      48      G      48         23.745
LGA    G      49      G      49         24.275
LGA    D      50      D      50         22.751
LGA    V      51      V      51         18.110
LGA    T      52      T      52         16.789
LGA    P      53      P      53         14.225
LGA    S      54      S      54          9.972
LGA    E      55      E      55          8.599
LGA    L      56      L      56         10.017
LGA    A      57      A      57          7.125
LGA    A      58      A      58          3.383
LGA    A      59      A      59          5.871
LGA    E      60      E      60          4.245
LGA    R      61      R      61          1.259
LGA    M      62      M      62          1.715
LGA    R      63      R      63          7.776
LGA    S      64      S      64          7.476
LGA    S      65      S      65         10.943
LGA    N      66      N      66         10.780
LGA    L      67      L      67         10.143
LGA    A      68      A      68         13.070
LGA    A      69      A      69         15.446
LGA    L      70      L      70         15.168
LGA    L      71      L      71         15.557
LGA    R      72      R      72         19.012
LGA    E      73      E      73         20.451
LGA    L      74      L      74         20.082
LGA    E      75      E      75         21.286
LGA    R      76      R      76         24.920
LGA    G      77      G      77         25.608
LGA    G      78      G      78         27.620
LGA    L      79      L      79         23.915
LGA    I      80      I      80         23.785
LGA    V      81      V      81         28.417
LGA    R      82      R      82         28.238
LGA    H      83      H      83         29.002
LGA    A      84      A      84         31.231
LGA    D      85      D      85         29.573
LGA    P      86      P      86         32.409
LGA    R      91      R      91         33.543
LGA    T      92      T      92         28.915
LGA    R      93      R      93         22.624
LGA    V      94      V      94         18.843
LGA    S      95      S      95         14.433
LGA    L      96      L      96         11.929
LGA    S      97      S      97         14.637
LGA    S      98      S      98         15.224
LGA    E      99      E      99         13.382
LGA    G     100      G     100         10.384
LGA    R     101      R     101         11.637
LGA    R     102      R     102         12.859
LGA    N     103      N     103         10.372
LGA    L     104      L     104          8.596
LGA    Y     105      Y     105          9.835
LGA    G     106      G     106         10.585
LGA    N     107      N     107          8.908
LGA    R     108      R     108          8.290
LGA    A     109      A     109         10.034
LGA    K     110      K     110         10.300
LGA    R     111      R     111          8.658
LGA    E     112      E     112          8.831
LGA    E     113      E     113         10.433
LGA    W     114      W     114          9.984
LGA    L     115      L     115          8.819
LGA    V     116      V     116          9.424
LGA    R     117      R     117         10.756
LGA    A     118      A     118         10.299
LGA    M     119      M     119          9.901
LGA    H     120      H     120         11.010
LGA    A     121      A     121         11.991
LGA    C     122      C     122         11.344
LGA    L     123      L     123          6.918
LGA    D     124      D     124          2.919
LGA    E     125      E     125          1.910
LGA    S     126      S     126          5.558
LGA    E     127      E     127          5.937
LGA    R     128      R     128          2.657
LGA    A     129      A     129          2.289
LGA    L     130      L     130          3.840
LGA    L     131      L     131          3.661
LGA    A     132      A     132          3.494
LGA    A     133      A     133          2.903
LGA    A     134      A     134          2.049
LGA    G     135      G     135          5.760
LGA    P     136      P     136          6.908
LGA    L     137      L     137          3.179
LGA    L     138      L     138          6.947
LGA    T     139      T     139         10.450
LGA    R     140      R     140          8.515
LGA    L     141      L     141          7.138
LGA    A     142      A     142         12.461
LGA    Q     143      Q     143         13.901
LGA    F     144      F     144         14.409
LGA    E     145      E     145         19.337

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  147  140    4.0     40    2.12    32.500    28.316     1.804

LGA_LOCAL      RMSD =  2.117  Number of atoms =   40  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 13.437  Number of atoms =  140 
Std_ALL_ATOMS  RMSD =  9.900  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.090008 * X  +  -0.958371 * Y  +   0.270969 * Z  +  54.122761
  Y_new =  -0.775022 * X  +   0.103473 * Y  +   0.623406 * Z  +   0.707363
  Z_new =  -0.625492 * X  +  -0.266118 * Y  +  -0.733445 * Z  +  54.069771 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.793531    0.348062  [ DEG:  -160.0575     19.9425 ]
  Theta =   0.675762    2.465831  [ DEG:    38.7183    141.2817 ]
  Phi   =  -1.455178    1.686414  [ DEG:   -83.3756     96.6244 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0373TS168_4                                  
REMARK     2: T0373.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0373TS168_4.T0373.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  147  140   4.0   40   2.12  28.316     9.90
REMARK  ---------------------------------------------------------- 
MOLECULE T0373TS168_4
PFRMAT TS
TARGET T0373
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      78.527  -7.233  65.780  1.00 25.00           C
ATOM      2  CA  PRO     2      76.221  -5.095  67.948  1.00 25.00           C
ATOM      3  CA  THR     3      78.086  -2.038  66.587  1.00 25.00           C
ATOM      4  CA  ASN     4      74.926   0.027  66.941  1.00 25.00           C
ATOM      5  CA  GLN     5      74.616   1.644  63.483  1.00 25.00           C
ATOM      6  CA  ASP     6      71.720  -0.708  62.616  1.00 25.00           C
ATOM      7  CA  LEU     7      69.980   0.180  65.910  1.00 25.00           C
ATOM      8  CA  GLN     8      70.425   3.911  65.169  1.00 25.00           C
ATOM      9  CA  LEU     9      68.955   3.416  61.667  1.00 25.00           C
ATOM     10  CA  ALA    10      65.966   1.544  63.161  1.00 25.00           C
ATOM     11  CA  ALA    11      65.419   4.377  65.679  1.00 25.00           C
ATOM     12  CA  HIS    12      65.544   6.952  62.847  1.00 25.00           C
ATOM     13  CA  LEU    13      62.991   4.912  60.848  1.00 25.00           C
ATOM     14  CA  ARG    14      60.698   4.734  63.911  1.00 25.00           C
ATOM     15  CA  SER    15      60.991   8.523  64.382  1.00 25.00           C
ATOM     16  CA  GLN    16      60.127   9.073  60.691  1.00 25.00           C
ATOM     17  CA  VAL    17      57.080   6.781  61.038  1.00 25.00           C
ATOM     18  CA  THR    18      55.947   8.714  64.144  1.00 25.00           C
ATOM     19  CA  THR    19      56.334  12.023  62.254  1.00 25.00           C
ATOM     20  CA  LEU    20      54.277  10.627  59.341  1.00 25.00           C
ATOM     21  CA  THR    21      51.549   9.491  61.778  1.00 25.00           C
ATOM     22  CA  ARG    22      51.499  12.969  63.380  1.00 25.00           C
ATOM     23  CA  ARG    23      51.188  14.586  59.922  1.00 25.00           C
ATOM     24  CA  LEU    24      48.292  12.234  59.056  1.00 25.00           C
ATOM     25  CA  ARG    25      46.553  13.121  62.351  1.00 25.00           C
ATOM     26  CA  ARG    26      46.998  16.853  61.609  1.00 25.00           C
ATOM     27  CA  GLU    27      45.528  16.357  58.108  1.00 25.00           C
ATOM     28  CA  ALA    28      42.207  17.846  59.181  1.00 25.00           C
ATOM     29  CA  GLN    29      40.042  16.366  61.888  1.00 25.00           C
ATOM     30  CA  ALA    30      36.926  14.389  61.016  1.00 25.00           C
ATOM     31  CA  ASP    31      37.212  11.192  63.154  1.00 25.00           C
ATOM     32  CA  PRO    32      39.423   8.493  61.566  1.00 25.00           C
ATOM     33  CA  VAL    33      41.787   6.620  59.306  1.00 25.00           C
ATOM     34  CA  GLN    34      43.675   4.071  61.423  1.00 25.00           C
ATOM     35  CA  PHE    35      46.966   3.606  63.259  1.00 25.00           C
ATOM     36  CA  SER    36      50.595   4.627  62.589  1.00 25.00           C
ATOM     37  CA  GLN    37      51.740   2.680  65.682  1.00 25.00           C
ATOM     38  CA  LEU    38      49.793  -0.397  64.496  1.00 25.00           C
ATOM     39  CA  VAL    39      51.403  -0.113  61.034  1.00 25.00           C
ATOM     40  CA  VAL    40      54.872   0.134  62.641  1.00 25.00           C
ATOM     41  CA  LEU    41      54.135  -2.967  64.764  1.00 25.00           C
ATOM     42  CA  GLY    42      53.003  -4.869  61.638  1.00 25.00           C
ATOM     43  CA  ALA    43      56.212  -3.840  59.819  1.00 25.00           C
ATOM     44  CA  ILE    44      58.310  -5.027  62.795  1.00 25.00           C
ATOM     45  CA  ASP    45      56.452  -8.376  62.799  1.00 25.00           C
ATOM     46  CA  ARG    46      57.079  -8.756  59.040  1.00 25.00           C
ATOM     47  CA  LEU    47      57.095 -12.511  59.776  1.00 25.00           C
ATOM     48  CA  GLY    48      58.622 -15.326  61.710  1.00 25.00           C
ATOM     49  CA  GLY    49      56.968 -17.771  59.393  1.00 25.00           C
ATOM     50  CA  ASP    50      54.997 -16.921  56.273  1.00 25.00           C
ATOM     51  CA  VAL    51      53.452 -13.658  55.081  1.00 25.00           C
ATOM     52  CA  THR    52      50.312 -12.865  53.064  1.00 25.00           C
ATOM     53  CA  PRO    53      46.563 -12.622  53.530  1.00 25.00           C
ATOM     54  CA  SER    54      44.728 -14.617  56.235  1.00 25.00           C
ATOM     55  CA  GLU    55      48.074 -15.857  57.625  1.00 25.00           C
ATOM     56  CA  LEU    56      49.403 -12.266  57.694  1.00 25.00           C
ATOM     57  CA  ALA    57      46.252 -11.108  59.538  1.00 25.00           C
ATOM     58  CA  ALA    58      46.673 -13.936  62.085  1.00 25.00           C
ATOM     59  CA  ALA    59      50.335 -12.947  62.614  1.00 25.00           C
ATOM     60  CA  GLU    60      49.299  -9.297  63.139  1.00 25.00           C
ATOM     61  CA  ARG    61      47.170  -9.639  66.273  1.00 25.00           C
ATOM     62  CA  MET    62      43.488 -10.382  66.566  1.00 25.00           C
ATOM     63  CA  ARG    63      42.528 -10.889  62.938  1.00 25.00           C
ATOM     64  CA  SER    64      40.846  -7.531  63.316  1.00 25.00           C
ATOM     65  CA  SER    65      41.877  -4.099  64.668  1.00 25.00           C
ATOM     66  CA  ASN    66      45.537  -4.833  63.810  1.00 25.00           C
ATOM     67  CA  LEU    67      44.521  -5.877  60.268  1.00 25.00           C
ATOM     68  CA  ALA    68      42.502  -2.648  59.868  1.00 25.00           C
ATOM     69  CA  ALA    69      45.506  -0.593  61.061  1.00 25.00           C
ATOM     70  CA  LEU    70      47.769  -2.403  58.557  1.00 25.00           C
ATOM     71  CA  LEU    71      45.267  -1.696  55.747  1.00 25.00           C
ATOM     72  CA  ARG    72      45.160   2.001  56.738  1.00 25.00           C
ATOM     73  CA  GLU    73      48.986   2.143  56.717  1.00 25.00           C
ATOM     74  CA  LEU    74      49.052   0.529  53.245  1.00 25.00           C
ATOM     75  CA  GLU    75      46.489   3.081  51.983  1.00 25.00           C
ATOM     76  CA  ARG    76      48.601   5.941  53.406  1.00 25.00           C
ATOM     77  CA  GLY    77      52.305   5.063  52.910  1.00 25.00           C
ATOM     78  CA  GLY    78      53.894   1.587  52.366  1.00 25.00           C
ATOM     79  CA  LEU    79      54.455   1.036  56.128  1.00 25.00           C
ATOM     80  CA  ILE    80      54.204  -2.731  55.467  1.00 25.00           C
ATOM     81  CA  VAL    81      56.222  -5.184  53.413  1.00 25.00           C
ATOM     82  CA  ARG    82      54.960  -8.550  52.153  1.00 25.00           C
ATOM     83  CA  HIS    83      53.352  -9.434  48.793  1.00 25.00           C
ATOM     84  CA  ALA    84      53.396 -10.467  45.137  1.00 25.00           C
ATOM     85  CA  ASP    85      53.513 -13.394  42.654  1.00 25.00           C
ATOM     86  CA  PRO    86      54.235 -14.969  39.253  1.00 25.00           C
ATOM     87  CA  GLN    87      54.408 -13.046  35.979  1.00 25.00           C
ATOM     88  CA  ASP    88      53.792  -9.405  36.669  1.00 25.00           C
ATOM     89  CA  GLY    89      53.580  -7.814  40.077  1.00 25.00           C
ATOM     90  CA  ARG    90      54.217  -5.769  43.221  1.00 25.00           C
ATOM     91  CA  ARG    91      56.303  -4.316  46.052  1.00 25.00           C
ATOM     92  CA  THR    92      53.890  -4.304  48.930  1.00 25.00           C
ATOM     93  CA  ARG    93      51.438  -4.817  51.848  1.00 25.00           C
ATOM     94  CA  VAL    94      50.538  -6.275  55.273  1.00 25.00           C
ATOM     95  CA  SER    95      46.782  -6.783  54.610  1.00 25.00           C
ATOM     96  CA  LEU    96      43.464  -6.965  56.402  1.00 25.00           C
ATOM     97  CA  SER    97      41.853  -8.469  53.233  1.00 25.00           C
ATOM     98  CA  SER    98      40.127  -8.830  49.827  1.00 25.00           C
ATOM     99  CA  GLU    99      37.970  -5.670  49.988  1.00 25.00           C
ATOM    100  CA  GLY   100      40.490  -4.040  52.366  1.00 25.00           C
ATOM    101  CA  ARG   101      43.354  -4.944  49.989  1.00 25.00           C
ATOM    102  CA  ARG   102      41.420  -3.438  47.047  1.00 25.00           C
ATOM    103  CA  ASN   103      40.808  -0.234  49.055  1.00 25.00           C
ATOM    104  CA  LEU   104      44.536  -0.031  49.910  1.00 25.00           C
ATOM    105  CA  TYR   105      45.434  -0.482  46.214  1.00 25.00           C
ATOM    106  CA  GLY   106      42.975   2.292  45.253  1.00 25.00           C
ATOM    107  CA  ASN   107      44.513   4.603  47.892  1.00 25.00           C
ATOM    108  CA  ARG   108      48.018   3.848  46.547  1.00 25.00           C
ATOM    109  CA  ALA   109      46.845   4.622  42.986  1.00 25.00           C
ATOM    110  CA  LYS   110      45.327   7.931  44.178  1.00 25.00           C
ATOM    111  CA  ARG   111      48.609   8.830  45.936  1.00 25.00           C
ATOM    112  CA  GLU   112      50.567   8.031  42.743  1.00 25.00           C
ATOM    113  CA  GLU   113      48.187  10.232  40.704  1.00 25.00           C
ATOM    114  CA  TRP   114      48.636  13.088  43.215  1.00 25.00           C
ATOM    115  CA  LEU   115      52.442  12.718  42.992  1.00 25.00           C
ATOM    116  CA  VAL   116      52.251  12.813  39.168  1.00 25.00           C
ATOM    117  CA  ARG   117      50.093  15.973  39.330  1.00 25.00           C
ATOM    118  CA  ALA   118      52.614  17.603  41.708  1.00 25.00           C
ATOM    119  CA  MET   119      55.478  16.699  39.331  1.00 25.00           C
ATOM    120  CA  HIS   120      53.544  18.206  36.388  1.00 25.00           C
ATOM    121  CA  ALA   121      52.933  21.408  38.398  1.00 25.00           C
ATOM    122  CA  CYS   122      55.778  22.205  40.703  1.00 25.00           C
ATOM    123  CA  LEU   123      57.732  19.791  42.972  1.00 25.00           C
ATOM    124  CA  ASP   124      61.409  20.720  43.249  1.00 25.00           C
ATOM    125  CA  GLU   125      61.895  16.970  43.668  1.00 25.00           C
ATOM    126  CA  SER   126      62.025  15.942  47.355  1.00 25.00           C
ATOM    127  CA  GLU   127      59.174  13.450  46.786  1.00 25.00           C
ATOM    128  CA  ARG   128      61.017  11.994  43.761  1.00 25.00           C
ATOM    129  CA  ALA   129      64.211  11.644  45.845  1.00 25.00           C
ATOM    130  CA  LEU   130      62.242   9.872  48.611  1.00 25.00           C
ATOM    131  CA  LEU   131      60.714   7.489  46.032  1.00 25.00           C
ATOM    132  CA  ALA   132      64.197   6.739  44.627  1.00 25.00           C
ATOM    133  CA  ALA   133      65.497   6.034  48.159  1.00 25.00           C
ATOM    134  CA  ALA   134      62.546   3.680  48.802  1.00 25.00           C
ATOM    135  CA  GLY   135      63.254   1.853  45.511  1.00 25.00           C
ATOM    136  CA  PRO   136      66.943   1.493  46.476  1.00 25.00           C
ATOM    137  CA  LEU   137      65.937   0.096  49.896  1.00 25.00           C
ATOM    138  CA  LEU   138      63.580  -2.407  48.209  1.00 25.00           C
ATOM    139  CA  THR   139      66.387  -3.489  45.839  1.00 25.00           C
ATOM    140  CA  ARG   140      68.751  -3.960  48.814  1.00 25.00           C
ATOM    141  CA  LEU   141      66.106  -6.063  50.616  1.00 25.00           C
ATOM    142  CA  ALA   142      65.644  -8.211  47.479  1.00 25.00           C
ATOM    143  CA  GLN   143      69.432  -8.711  47.232  1.00 25.00           C
ATOM    144  CA  PHE   144      72.411 -10.830  48.052  1.00 25.00           C
ATOM    145  CA  GLU   145      75.723  -9.879  46.485  1.00 25.00           C
ATOM    146  CA  GLU   146      78.073  -6.869  46.802  1.00 25.00           C
ATOM    147  CA  PRO   147      76.528  -4.957  43.912  1.00 25.00           C
TER
END
