
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  147 (  147),  selected  140 , name T0373TS168_3
# Molecule2: number of CA atoms  140 ( 1047),  selected  140 , name T0373.pdb
# PARAMETERS: T0373TS168_3.T0373.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    56        25 - 80          4.97    21.61
  LCS_AVERAGE:     32.57

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29         2 - 30          1.97    17.45
  LONGEST_CONTINUOUS_SEGMENT:    29        95 - 123         1.97    16.78
  LCS_AVERAGE:     14.73

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        97 - 122         0.91    16.45
  LCS_AVERAGE:     11.89

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  140
LCS_GDT     P       2     P       2      3   29   39     3    3    3    4    5   10   17   25   30   36   40   42   43   44   45   46   49   54   62   65 
LCS_GDT     T       3     T       3     25   29   39     3    3    6   18   26   28   29   30   33   36   40   42   43   44   45   46   49   54   58   62 
LCS_GDT     N       4     N       4     25   29   39    10   22   24   25   26   28   29   30   33   36   40   42   43   44   45   46   49   54   58   62 
LCS_GDT     Q       5     Q       5     25   29   39    11   22   24   25   26   28   29   30   33   35   40   42   43   44   45   46   49   54   58   62 
LCS_GDT     D       6     D       6     25   29   39    10   22   24   25   26   28   29   30   33   36   40   42   43   44   45   46   49   54   58   65 
LCS_GDT     L       7     L       7     25   29   39    10   22   24   25   26   28   29   30   33   36   40   42   43   44   45   46   49   54   58   65 
LCS_GDT     Q       8     Q       8     25   29   39    12   22   24   25   26   28   29   30   33   36   40   42   43   44   45   46   49   54   62   65 
LCS_GDT     L       9     L       9     25   29   39    10   22   24   25   26   28   29   30   33   36   40   42   43   44   45   46   49   54   62   65 
LCS_GDT     A      10     A      10     25   29   39    10   22   24   25   26   28   29   30   33   36   40   42   43   44   45   46   49   55   62   68 
LCS_GDT     A      11     A      11     25   29   39    11   22   24   25   26   28   29   30   33   36   40   42   43   44   45   46   50   56   65   73 
LCS_GDT     H      12     H      12     25   29   39    11   22   24   25   26   28   29   30   33   36   40   42   43   44   45   46   50   61   67   73 
LCS_GDT     L      13     L      13     25   29   39    11   22   24   25   26   28   29   30   33   36   40   42   43   44   45   46   50   56   67   73 
LCS_GDT     R      14     R      14     25   29   39    11   22   24   25   26   28   29   30   33   36   40   42   43   44   45   48   60   67   72   75 
LCS_GDT     S      15     S      15     25   29   39    12   22   24   25   26   28   29   30   33   36   40   42   43   44   50   56   64   67   72   75 
LCS_GDT     Q      16     Q      16     25   29   39    11   22   24   25   26   28   29   30   33   36   40   42   43   44   45   52   62   67   72   75 
LCS_GDT     V      17     V      17     25   29   39     8   22   24   25   26   28   29   30   33   36   40   42   43   44   45   52   62   69   72   77 
LCS_GDT     T      18     T      18     25   29   39    12   22   24   25   26   28   29   30   33   36   40   42   49   55   60   64   70   73   75   79 
LCS_GDT     T      19     T      19     25   29   39    12   22   24   25   26   28   29   30   33   36   40   42   49   55   60   64   70   73   75   79 
LCS_GDT     L      20     L      20     25   29   39    12   22   24   25   26   28   29   30   33   36   40   42   43   44   58   64   70   73   75   81 
LCS_GDT     T      21     T      21     25   29   39    12   22   24   25   26   28   29   30   33   36   40   48   55   59   61   65   70   73   75   81 
LCS_GDT     R      22     R      22     25   29   39    12   22   24   25   26   28   29   36   42   45   49   52   55   59   61   65   70   73   75   81 
LCS_GDT     R      23     R      23     25   29   54    12   22   24   25   26   28   29   30   33   42   47   52   55   59   61   65   70   73   75   79 
LCS_GDT     L      24     L      24     25   29   54    12   22   24   25   26   28   29   30   33   36   43   49   54   57   61   65   70   73   75   81 
LCS_GDT     R      25     R      25     25   29   56    12   22   24   25   26   28   29   34   38   43   49   52   54   59   61   65   70   73   75   78 
LCS_GDT     R      26     R      26     25   29   56    12   22   24   25   26   28   29   34   38   43   49   52   54   59   61   65   70   72   75   77 
LCS_GDT     E      27     E      27     25   29   56    12   22   24   25   26   28   29   30   36   40   46   49   54   57   61   64   65   71   73   76 
LCS_GDT     A      28     A      28     25   29   56     3    3    4    9   22   28   29   30   33   36   40   42   43   46   53   57   61   63   66   72 
LCS_GDT     Q      29     Q      29      3   29   56     3    3    4   25   26   28   29   30   33   36   40   42   43   44   46   53   55   59   64   66 
LCS_GDT     A      30     A      30      3   29   56     3    3    4    5    6   27   29   30   33   34   40   42   43   44   50   53   61   61   66   72 
LCS_GDT     D      31     D      31      3    5   56     3    3    3    5    6   10   20   29   35   40   46   49   54   57   61   65   70   73   78   81 
LCS_GDT     P      32     P      32      3   16   56     3    9   14   15   18   22   27   34   38   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     V      33     V      33      3   16   56     3    5   12   16   18   22   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     Q      34     Q      34      3   16   56     3    3    3    5    7   13   26   34   38   43   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     F      35     F      35     13   16   56    12   13   13   14   17   21   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     S      36     S      36     13   16   56    12   13   22   28   29   29   30   35   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     Q      37     Q      37     13   16   56    12   13   13   16   20   23   28   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     L      38     L      38     13   16   56    12   13   13   14   14   21   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     V      39     V      39     13   16   56    12   13   13   14   15   21   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     V      40     V      40     13   16   56    12   21   26   28   29   29   30   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     L      41     L      41     13   16   56    12   13   13   14   14   23   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     G      42     G      42     13   16   56    12   13   13   14   14   18   28   36   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     A      43     A      43     13   16   56    12   13   13   14   16   23   34   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     I      44     I      44     13   16   56    12   13   13   16   27   28   30   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     D      45     D      45     13   16   56    12   13   13   14   14   18   28   36   42   45   49   52   55   59   61   65   70   73   75   77 
LCS_GDT     R      46     R      46     13   16   56    12   13   13   14   14   15   22   32   42   45   49   52   55   59   61   65   70   73   75   78 
LCS_GDT     L      47     L      47     13   16   56     3   13   13   14   17   22   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     G      48     G      48      3   14   56     3    3    4    8   12   14   18   26   32   40   48   51   55   59   61   65   70   73   75   77 
LCS_GDT     G      49     G      49      3    5   56     3    3    4    5    5    6   12   15   17   26   34   43   54   59   61   65   70   73   78   81 
LCS_GDT     D      50     D      50      4   14   56     3    4   12   15   23   30   34   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     V      51     V      51     12   14   56     3    5   12   17   20   24   31   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     T      52     T      52     12   14   56     3    9   14   17   20   23   27   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     P      53     P      53     12   14   56     8    9   14   17   20   23   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     S      54     S      54     12   14   56     8    9   14   17   20   23   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     E      55     E      55     12   14   56     8    9   14   17   20   26   31   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     L      56     L      56     12   14   56     8    9   14   20   26   30   34   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     A      57     A      57     12   14   56     8    9   14   20   26   30   34   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     A      58     A      58     12   14   56     8    9   14   17   22   29   34   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     A      59     A      59     12   14   56     8    9   14   17   20   30   34   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     E      60     E      60     12   14   56     8    9   14   17   20   30   34   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     R      61     R      61     12   14   56     1    7   14   17   20   30   34   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     M      62     M      62     12   14   56     2    9   17   21   26   30   34   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     R      63     R      63     14   15   56     3    5   14   24   27   28   33   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     S      64     S      64     14   15   56    11   13   13   14   15   23   27   32   39   44   48   51   54   59   61   65   70   73   78   81 
LCS_GDT     S      65     S      65     14   15   56    11   13   13   14   20   23   27   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     N      66     N      66     14   15   56    11   13   13   17   20   23   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     L      67     L      67     14   15   56    11   13   13   14   15   22   27   35   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     A      68     A      68     14   15   56    11   13   13   16   20   23   27   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     A      69     A      69     14   15   56    11   13   13   17   20   23   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     L      70     L      70     14   15   56    11   13   13   14   20   22   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     L      71     L      71     14   15   56    11   13   13   15   20   23   27   37   42   45   49   52   55   59   61   65   70   73   76   81 
LCS_GDT     R      72     R      72     14   15   56    11   13   13   17   20   23   29   37   42   45   49   52   55   59   61   65   70   73   75   80 
LCS_GDT     E      73     E      73     14   15   56    11   13   14   16   19   22   29   37   42   45   49   52   55   59   61   65   70   73   77   81 
LCS_GDT     L      74     L      74     14   15   56    11   13   13   14   19   22   27   32   40   44   49   52   55   59   61   65   70   73   75   80 
LCS_GDT     E      75     E      75     14   15   56    10   13   13   17   20   23   27   37   42   45   49   52   55   59   61   65   70   73   75   77 
LCS_GDT     R      76     R      76     14   15   56    10   13   14   16   20   22   29   37   42   45   49   52   55   59   61   65   70   73   75   77 
LCS_GDT     G      77     G      77      5   15   56     3    4    7    9   11   15   21   29   37   43   48   52   55   59   61   65   70   73   78   81 
LCS_GDT     G      78     G      78      5    7   56     3    4    7    9   10   12   19   29   33   40   45   52   55   59   61   65   70   73   78   81 
LCS_GDT     L      79     L      79      5    7   56     3    4    7    9   11   20   25   32   40   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     I      80     I      80      5    7   56     3    3    7    9   10   20   29   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     V      81     V      81      5    7   54     1    3    7    9   10   10   16   18   23   30   36   45   54   57   61   65   70   73   78   81 
LCS_GDT     R      82     R      82      4    7   54     2    3    4    9   10   10   15   18   27   34   40   49   54   57   60   65   70   73   78   81 
LCS_GDT     H      83     H      83      4    7   54     0    3    5    6    6    9   11   16   20   27   33   43   50   55   58   62   66   70   74   76 
LCS_GDT     A      84     A      84      4    7   54     2    3    5    6    7   11   13   17   21   26   31   38   47   52   57   60   64   65   69   74 
LCS_GDT     D      85     D      85      3    7   51     1    3    5    6    6    7    7   11   14   18   20   25   31   36   41   49   52   56   59   61 
LCS_GDT     P      86     P      86      3    7   12     2    3    5    6    6    7    7    8    9   12   13   15   19   22   24   27   34   39   45   49 
LCS_GDT     R      91     R      91      5    8   13     4    6    7    8   10   10   10   11   11   12   15   17   19   20   24   26   28   30   31   39 
LCS_GDT     T      92     T      92      5    8   14     4    6    7    8   10   10   10   11   11   12   16   17   19   22   24   27   32   34   37   40 
LCS_GDT     R      93     R      93      5    8   33     4    6    7    8   10   10   10   14   16   17   19   29   30   32   36   43   46   49   53   61 
LCS_GDT     V      94     V      94      5    8   36     4    6    7   14   15   20   21   26   30   34   39   43   47   51   57   60   62   66   68   72 
LCS_GDT     S      95     S      95      5   29   39     3    6   13   17   20   23   27   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     L      96     L      96     24   29   39     8   13   23   28   29   29   30   37   42   45   49   52   55   59   61   65   70   73   78   81 
LCS_GDT     S      97     S      97     26   29   39     3    5   16   26   29   29   30   33   39   44   48   52   55   59   61   65   69   73   77   81 
LCS_GDT     S      98     S      98     26   29   39     8   19   26   28   29   30   34   37   40   42   44   51   54   57   61   65   70   73   78   81 
LCS_GDT     E      99     E      99     26   29   39     8   23   26   28   29   29   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     G     100     G     100     26   29   39     8   23   26   28   29   30   34   37   40   42   45   51   55   59   61   65   70   73   78   81 
LCS_GDT     R     101     R     101     26   29   39     8   23   26   28   29   30   34   37   40   42   48   51   55   59   61   65   70   73   78   81 
LCS_GDT     R     102     R     102     26   29   39     8   23   26   28   29   30   34   37   40   42   44   48   53   57   60   65   70   73   78   81 
LCS_GDT     N     103     N     103     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   70   73   78   81 
LCS_GDT     L     104     L     104     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   53   57   60   65   70   73   78   81 
LCS_GDT     Y     105     Y     105     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   70   73   78   81 
LCS_GDT     G     106     G     106     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     N     107     N     107     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     R     108     R     108     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     A     109     A     109     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     K     110     K     110     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     R     111     R     111     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     E     112     E     112     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     E     113     E     113     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     W     114     W     114     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     L     115     L     115     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     V     116     V     116     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     R     117     R     117     26   29   39    13   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     A     118     A     118     26   29   39    14   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     M     119     M     119     26   29   39    11   23   26   28   29   29   33   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     H     120     H     120     26   29   39    10   23   26   28   29   29   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     A     121     A     121     26   29   39    11   23   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     C     122     C     122     26   29   39     7   20   26   28   29   30   34   37   40   42   44   48   51   57   60   64   69   73   78   81 
LCS_GDT     L     123     L     123      3   29   39     1    3    6   12   23   30   34   37   40   42   44   48   51   54   60   64   69   73   78   81 
LCS_GDT     D     124     D     124      3   20   39     2    3    6   11   18   22   23   26   32   42   44   46   48   51   52   55   59   64   70   73 
LCS_GDT     E     125     E     125     19   20   39    10   13   19   21   21   22   23   24   25   27   28   31   37   45   50   54   56   59   62   65 
LCS_GDT     S     126     S     126     19   20   39    10   13   19   21   21   22   23   24   25   27   28   31   32   35   43   53   55   58   62   64 
LCS_GDT     E     127     E     127     19   20   39    10   13   19   21   21   22   23   24   25   27   28   31   32   35   45   54   56   59   62   64 
LCS_GDT     R     128     R     128     19   20   39    10   13   19   21   21   22   23   24   28   42   44   46   48   51   52   56   60   65   72   76 
LCS_GDT     A     129     A     129     19   20   39    10   13   19   21   21   22   23   24   33   42   44   46   48   51   52   55   59   64   68   71 
LCS_GDT     L     130     L     130     19   20   39    10   13   19   21   21   22   23   24   25   27   28   31   38   45   50   54   56   59   62   71 
LCS_GDT     L     131     L     131     19   20   39    10   13   19   21   21   22   23   24   25   27   28   34   44   49   52   54   61   68   74   78 
LCS_GDT     A     132     A     132     19   20   39    10   13   19   21   21   22   26   30   35   41   44   48   51   55   60   64   69   73   78   81 
LCS_GDT     A     133     A     133     19   20   39    10   11   19   21   21   22   23   24   25   27   35   43   46   52   55   61   67   71   78   81 
LCS_GDT     A     134     A     134     19   20   39    10   12   19   21   21   22   23   24   30   30   33   36   38   39   43   54   57   70   74   81 
LCS_GDT     G     135     G     135     19   20   35     7   13   19   21   21   24   29   30   31   34   37   44   51   57   60   64   69   73   78   81 
LCS_GDT     P     136     P     136     19   20   35     8   13   19   21   21   23   26   30   33   36   43   46   51   57   60   64   69   73   78   81 
LCS_GDT     L     137     L     137     19   20   35     8   13   19   21   21   22   26   30   33   36   40   44   51   57   60   64   69   73   78   81 
LCS_GDT     L     138     L     138     19   20   35     8   13   19   21   21   23   26   30   33   36   40   42   46   57   60   64   68   72   78   81 
LCS_GDT     T     139     T     139     19   20   35     8   13   19   21   21   22   24   28   32   36   40   42   46   57   60   64   68   73   78   81 
LCS_GDT     R     140     R     140     19   20   35     8   13   19   21   21   22   24   28   32   36   40   42   50   57   60   64   68   73   78   81 
LCS_GDT     L     141     L     141     19   20   35     8   13   19   21   21   22   23   25   32   36   40   42   43   47   55   63   66   70   76   81 
LCS_GDT     A     142     A     142     19   20   35     8   13   19   21   21   22   23   24   25   27   28   37   42   45   48   53   56   63   68   77 
LCS_GDT     Q     143     Q     143     19   20   35     8   13   19   21   21   22   23   24   25   27   28   35   41   47   51   54   56   60   70   77 
LCS_GDT     F     144     F     144      3   20   35     3    3    3    4    9   13   16   22   24   26   28   31   37   41   43   45   50   51   53   61 
LCS_GDT     E     145     E     145      3    4   35     3    3    3    4    4    6   11   22   23   25   28   28   30   31   39   42   43   49   53   54 
LCS_AVERAGE  LCS_A:  19.73  (  11.89   14.73   32.57 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     23     26     28     29     30     34     37     42     45     49     52     55     59     61     65     70     73     78     81 
GDT PERCENT_CA  10.00  16.43  18.57  20.00  20.71  21.43  24.29  26.43  30.00  32.14  35.00  37.14  39.29  42.14  43.57  46.43  50.00  52.14  55.71  57.86
GDT RMS_LOCAL    0.28   0.69   0.85   1.01   1.07   2.10   2.32   2.52   3.13   3.34   3.60   3.83   4.09   4.35   4.50   4.88   5.39   5.83   6.24   6.37
GDT RMS_ALL_CA  15.83  16.25  16.35  16.40  16.51  17.74  17.77  17.60  21.07  20.61  21.03  20.59  19.55  19.89  19.71  19.33  17.96  14.97  14.62  14.70

#      Molecule1      Molecule2       DISTANCE
LGA    P       2      P       2         49.263
LGA    T       3      T       3         49.436
LGA    N       4      N       4         47.563
LGA    Q       5      Q       5         44.015
LGA    D       6      D       6         40.134
LGA    L       7      L       7         39.700
LGA    Q       8      Q       8         38.933
LGA    L       9      L       9         34.105
LGA    A      10      A      10         31.225
LGA    A      11      A      11         32.340
LGA    H      12      H      12         30.389
LGA    L      13      L      13         25.226
LGA    R      14      R      14         24.084
LGA    S      15      S      15         25.956
LGA    Q      16      Q      16         22.235
LGA    V      17      V      17         17.770
LGA    T      18      T      18         19.408
LGA    T      19      T      19         21.336
LGA    L      20      L      20         16.859
LGA    T      21      T      21         15.468
LGA    R      22      R      22         20.076
LGA    R      23      R      23         19.849
LGA    L      24      L      24         16.640
LGA    R      25      R      25         19.663
LGA    R      26      R      26         24.076
LGA    E      27      E      27         22.141
LGA    A      28      A      28         25.034
LGA    Q      29      Q      29         29.068
LGA    A      30      A      30         25.229
LGA    D      31      D      31         19.853
LGA    P      32      P      32         14.638
LGA    V      33      V      33         15.187
LGA    Q      34      Q      34         16.084
LGA    F      35      F      35         12.825
LGA    S      36      S      36          9.641
LGA    Q      37      Q      37         14.008
LGA    L      38      L      38         13.722
LGA    V      39      V      39          7.272
LGA    V      40      V      40          7.198
LGA    L      41      L      41         11.252
LGA    G      42      G      42          9.975
LGA    A      43      A      43          4.222
LGA    I      44      I      44          5.639
LGA    D      45      D      45         10.044
LGA    R      46      R      46          9.506
LGA    L      47      L      47          6.619
LGA    G      48      G      48         10.417
LGA    G      49      G      49          8.252
LGA    D      50      D      50          2.035
LGA    V      51      V      51          3.793
LGA    T      52      T      52          5.848
LGA    P      53      P      53          4.571
LGA    S      54      S      54          4.338
LGA    E      55      E      55          3.474
LGA    L      56      L      56          0.898
LGA    A      57      A      57          0.285
LGA    A      58      A      58          3.056
LGA    A      59      A      59          2.964
LGA    E      60      E      60          3.653
LGA    R      61      R      61          3.313
LGA    M      62      M      62          3.031
LGA    R      63      R      63          3.824
LGA    S      64      S      64          8.241
LGA    S      65      S      65          8.225
LGA    N      66      N      66          8.161
LGA    L      67      L      67         10.058
LGA    A      68      A      68         11.087
LGA    A      69      A      69         10.480
LGA    L      70      L      70         11.518
LGA    L      71      L      71         13.576
LGA    R      72      R      72         13.561
LGA    E      73      E      73         13.112
LGA    L      74      L      74         15.368
LGA    E      75      E      75         16.500
LGA    R      76      R      76         16.298
LGA    G      77      G      77         10.145
LGA    G      78      G      78          9.995
LGA    L      79      L      79          8.387
LGA    I      80      I      80          9.203
LGA    V      81      V      81         12.762
LGA    R      82      R      82         13.368
LGA    H      83      H      83         18.688
LGA    A      84      A      84         23.614
LGA    D      85      D      85         29.214
LGA    P      86      P      86         36.519
LGA    R      91      R      91         29.326
LGA    T      92      T      92         25.218
LGA    R      93      R      93         18.690
LGA    V      94      V      94         13.574
LGA    S      95      S      95          8.667
LGA    L      96      L      96          4.796
LGA    S      97      S      97          5.689
LGA    S      98      S      98          3.411
LGA    E      99      E      99          3.850
LGA    G     100      G     100          3.742
LGA    R     101      R     101          2.463
LGA    R     102      R     102          1.973
LGA    N     103      N     103          2.532
LGA    L     104      L     104          2.621
LGA    Y     105      Y     105          1.162
LGA    G     106      G     106          1.086
LGA    N     107      N     107          2.369
LGA    R     108      R     108          2.189
LGA    A     109      A     109          0.858
LGA    K     110      K     110          1.333
LGA    R     111      R     111          2.253
LGA    E     112      E     112          1.858
LGA    E     113      E     113          1.090
LGA    W     114      W     114          1.606
LGA    L     115      L     115          1.968
LGA    V     116      V     116          2.392
LGA    R     117      R     117          1.844
LGA    A     118      A     118          0.899
LGA    M     119      M     119          3.132
LGA    H     120      H     120          3.945
LGA    A     121      A     121          1.948
LGA    C     122      C     122          0.868
LGA    L     123      L     123          3.087
LGA    D     124      D     124          8.238
LGA    E     125      E     125         11.689
LGA    S     126      S     126         12.670
LGA    E     127      E     127         11.385
LGA    R     128      R     128          7.253
LGA    A     129      A     129          7.405
LGA    L     130      L     130          9.695
LGA    L     131      L     131          8.220
LGA    A     132      A     132          5.165
LGA    A     133      A     133          7.178
LGA    A     134      A     134         10.886
LGA    G     135      G     135         10.186
LGA    P     136      P     136          9.493
LGA    L     137      L     137         12.444
LGA    L     138      L     138         15.478
LGA    T     139      T     139         15.794
LGA    R     140      R     140         16.722
LGA    L     141      L     141         20.206
LGA    A     142      A     142         22.027
LGA    Q     143      Q     143         22.984
LGA    F     144      F     144         29.496
LGA    E     145      E     145         34.418

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  147  140    4.0     37    2.52    27.321    24.210     1.410

LGA_LOCAL      RMSD =  2.524  Number of atoms =   37  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.508  Number of atoms =  140 
Std_ALL_ATOMS  RMSD = 11.825  (standard rmsd on all 140 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.094475 * X  +  -0.747846 * Y  +   0.657116 * Z  +  47.064739
  Y_new =  -0.540571 * X  +   0.515744 * Y  +   0.664674 * Z  +  -0.471574
  Z_new =  -0.835977 * X  +  -0.418012 * Y  +  -0.355539 * Z  +  54.296238 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.275608    0.865985  [ DEG:  -130.3827     49.6173 ]
  Theta =   0.989911    2.151682  [ DEG:    56.7177    123.2823 ]
  Phi   =  -1.397776    1.743817  [ DEG:   -80.0866     99.9134 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0373TS168_3                                  
REMARK     2: T0373.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0373TS168_3.T0373.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  147  140   4.0   37   2.52  24.210    11.83
REMARK  ---------------------------------------------------------- 
MOLECULE T0373TS168_3
PFRMAT TS
TARGET T0373
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      39.396 -16.018  31.120  1.00 25.00           C
ATOM      2  CA  PRO     2      42.199 -18.526  31.832  1.00 25.00           C
ATOM      3  CA  THR     3      43.469 -20.722  34.723  1.00 25.00           C
ATOM      4  CA  ASN     4      46.303 -19.488  36.986  1.00 25.00           C
ATOM      5  CA  GLN     5      47.108 -15.816  36.255  1.00 25.00           C
ATOM      6  CA  ASP     6      44.729 -14.713  39.046  1.00 25.00           C
ATOM      7  CA  LEU     7      46.398 -17.161  41.471  1.00 25.00           C
ATOM      8  CA  GLN     8      49.847 -15.808  40.502  1.00 25.00           C
ATOM      9  CA  LEU     9      48.628 -12.222  41.077  1.00 25.00           C
ATOM     10  CA  ALA    10      47.251 -13.215  44.510  1.00 25.00           C
ATOM     11  CA  ALA    11      50.598 -14.849  45.407  1.00 25.00           C
ATOM     12  CA  HIS    12      52.461 -11.682  44.327  1.00 25.00           C
ATOM     13  CA  LEU    13      50.117  -9.541  46.469  1.00 25.00           C
ATOM     14  CA  ARG    14      50.716 -11.845  49.470  1.00 25.00           C
ATOM     15  CA  SER    15      54.501 -11.579  48.949  1.00 25.00           C
ATOM     16  CA  GLN    16      54.235  -7.761  48.794  1.00 25.00           C
ATOM     17  CA  VAL    17      52.192  -7.747  52.032  1.00 25.00           C
ATOM     18  CA  THR    18      54.815  -9.963  53.727  1.00 25.00           C
ATOM     19  CA  THR    19      57.597  -7.601  52.564  1.00 25.00           C
ATOM     20  CA  LEU    20      55.656  -4.599  53.937  1.00 25.00           C
ATOM     21  CA  THR    21      55.197  -6.397  57.287  1.00 25.00           C
ATOM     22  CA  ARG    22      58.947  -7.168  57.415  1.00 25.00           C
ATOM     23  CA  ARG    23      59.752  -3.496  56.684  1.00 25.00           C
ATOM     24  CA  LEU    24      57.371  -2.392  59.475  1.00 25.00           C
ATOM     25  CA  ARG    25      59.041  -4.841  61.900  1.00 25.00           C
ATOM     26  CA  ARG    26      62.490  -3.487  60.932  1.00 25.00           C
ATOM     27  CA  GLU    27      61.271   0.097  61.507  1.00 25.00           C
ATOM     28  CA  ALA    28      63.703   0.598  64.447  1.00 25.00           C
ATOM     29  CA  GLN    29      64.052  -1.096  67.803  1.00 25.00           C
ATOM     30  CA  ALA    30      61.102  -1.483  70.260  1.00 25.00           C
ATOM     31  CA  ASP    31      58.328   1.129  69.812  1.00 25.00           C
ATOM     32  CA  PRO    32      55.929   0.984  66.936  1.00 25.00           C
ATOM     33  CA  VAL    33      53.092   0.852  64.341  1.00 25.00           C
ATOM     34  CA  GLN    34      51.652  -2.538  65.288  1.00 25.00           C
ATOM     35  CA  PHE    35      51.323  -2.927  61.519  1.00 25.00           C
ATOM     36  CA  SER    36      48.307  -1.339  59.775  1.00 25.00           C
ATOM     37  CA  GLN    37      49.359  -2.928  56.453  1.00 25.00           C
ATOM     38  CA  LEU    38      49.695  -6.337  58.163  1.00 25.00           C
ATOM     39  CA  VAL    39      46.211  -5.937  59.703  1.00 25.00           C
ATOM     40  CA  VAL    40      44.771  -5.040  56.271  1.00 25.00           C
ATOM     41  CA  LEU    41      46.441  -8.125  54.735  1.00 25.00           C
ATOM     42  CA  GLY    42      44.988 -10.324  57.514  1.00 25.00           C
ATOM     43  CA  ALA    43      41.509  -8.848  56.897  1.00 25.00           C
ATOM     44  CA  ILE    44      41.855  -9.534  53.145  1.00 25.00           C
ATOM     45  CA  ASP    45      42.900 -13.146  53.877  1.00 25.00           C
ATOM     46  CA  ARG    46      39.876 -13.578  56.187  1.00 25.00           C
ATOM     47  CA  LEU    47      36.548 -12.902  54.606  1.00 25.00           C
ATOM     48  CA  GLY    48      34.616 -15.844  56.001  1.00 25.00           C
ATOM     49  CA  GLY    49      31.921 -13.332  57.054  1.00 25.00           C
ATOM     50  CA  ASP    50      31.738 -10.939  54.079  1.00 25.00           C
ATOM     51  CA  VAL    51      34.424  -8.405  55.207  1.00 25.00           C
ATOM     52  CA  THR    52      35.696  -7.881  58.762  1.00 25.00           C
ATOM     53  CA  PRO    53      36.065  -7.444  62.525  1.00 25.00           C
ATOM     54  CA  SER    54      35.753 -11.024  63.849  1.00 25.00           C
ATOM     55  CA  GLU    55      37.245 -12.383  60.593  1.00 25.00           C
ATOM     56  CA  LEU    56      40.153  -9.907  60.864  1.00 25.00           C
ATOM     57  CA  ALA    57      40.766 -10.983  64.488  1.00 25.00           C
ATOM     58  CA  ALA    58      40.759 -14.661  63.423  1.00 25.00           C
ATOM     59  CA  ALA    59      43.264 -13.883  60.632  1.00 25.00           C
ATOM     60  CA  GLU    60      45.515 -12.050  63.130  1.00 25.00           C
ATOM     61  CA  ARG    61      45.273 -13.290  66.696  1.00 25.00           C
ATOM     62  CA  MET    62      42.563 -11.801  68.938  1.00 25.00           C
ATOM     63  CA  ARG    63      45.431 -10.026  70.665  1.00 25.00           C
ATOM     64  CA  SER    64      45.573  -8.090  67.374  1.00 25.00           C
ATOM     65  CA  SER    65      42.745  -5.959  68.831  1.00 25.00           C
ATOM     66  CA  ASN    66      45.268  -3.269  69.859  1.00 25.00           C
ATOM     67  CA  LEU    67      46.765  -3.291  66.335  1.00 25.00           C
ATOM     68  CA  ALA    68      43.267  -2.930  64.819  1.00 25.00           C
ATOM     69  CA  ALA    69      42.530   0.011  67.160  1.00 25.00           C
ATOM     70  CA  LEU    70      45.830   1.672  66.152  1.00 25.00           C
ATOM     71  CA  LEU    71      44.966   1.199  62.451  1.00 25.00           C
ATOM     72  CA  ARG    72      41.511   2.746  63.035  1.00 25.00           C
ATOM     73  CA  GLU    73      43.120   5.726  64.822  1.00 25.00           C
ATOM     74  CA  LEU    74      45.561   6.187  61.907  1.00 25.00           C
ATOM     75  CA  GLU    75      42.649   6.091  59.421  1.00 25.00           C
ATOM     76  CA  ARG    76      40.765   8.706  61.490  1.00 25.00           C
ATOM     77  CA  GLY    77      37.754   7.082  59.720  1.00 25.00           C
ATOM     78  CA  GLY    78      36.630   3.683  61.103  1.00 25.00           C
ATOM     79  CA  LEU    79      38.925   2.230  58.427  1.00 25.00           C
ATOM     80  CA  ILE    80      39.636  -1.544  58.304  1.00 25.00           C
ATOM     81  CA  VAL    81      38.979  -2.004  62.022  1.00 25.00           C
ATOM     82  CA  ARG    82      38.010  -3.198  65.509  1.00 25.00           C
ATOM     83  CA  HIS    83      37.483   0.386  66.571  1.00 25.00           C
ATOM     84  CA  ALA    84      36.747   3.471  68.596  1.00 25.00           C
ATOM     85  CA  ASP    85      37.708   6.514  70.640  1.00 25.00           C
ATOM     86  CA  PRO    86      40.084   9.322  71.469  1.00 25.00           C
ATOM     87  CA  GLN    87      43.736  10.459  71.079  1.00 25.00           C
ATOM     88  CA  ASP    88      47.037   9.368  69.453  1.00 25.00           C
ATOM     89  CA  GLY    89      48.745   7.473  66.631  1.00 25.00           C
ATOM     90  CA  ARG    90      49.653   5.038  63.815  1.00 25.00           C
ATOM     91  CA  ARG    91      49.307   3.533  60.331  1.00 25.00           C
ATOM     92  CA  THR    92      47.192   3.124  57.230  1.00 25.00           C
ATOM     93  CA  ARG    93      44.261   0.628  57.374  1.00 25.00           C
ATOM     94  CA  VAL    94      42.740  -0.890  54.243  1.00 25.00           C
ATOM     95  CA  SER    95      39.856  -2.254  52.164  1.00 25.00           C
ATOM     96  CA  LEU    96      36.924  -4.623  52.971  1.00 25.00           C
ATOM     97  CA  SER    97      33.991  -3.435  50.849  1.00 25.00           C
ATOM     98  CA  SER    98      31.715  -0.410  50.885  1.00 25.00           C
ATOM     99  CA  GLU    99      32.262   1.697  54.037  1.00 25.00           C
ATOM    100  CA  GLY   100      35.832   0.346  54.350  1.00 25.00           C
ATOM    101  CA  ARG   101      36.502   1.197  50.677  1.00 25.00           C
ATOM    102  CA  ARG   102      35.155   4.740  51.225  1.00 25.00           C
ATOM    103  CA  ASN   103      37.409   5.147  54.295  1.00 25.00           C
ATOM    104  CA  LEU   104      40.430   3.950  52.266  1.00 25.00           C
ATOM    105  CA  TYR   105      39.583   6.447  49.489  1.00 25.00           C
ATOM    106  CA  GLY   106      39.314   9.264  52.069  1.00 25.00           C
ATOM    107  CA  ASN   107      42.710   8.277  53.537  1.00 25.00           C
ATOM    108  CA  ARG   108      44.257   8.291  50.033  1.00 25.00           C
ATOM    109  CA  ALA   109      42.781  11.762  49.368  1.00 25.00           C
ATOM    110  CA  LYS   110      44.204  13.031  52.689  1.00 25.00           C
ATOM    111  CA  ARG   111      47.643  11.607  51.788  1.00 25.00           C
ATOM    112  CA  GLU   112      47.482  13.321  48.366  1.00 25.00           C
ATOM    113  CA  GLU   113      46.555  16.637  50.043  1.00 25.00           C
ATOM    114  CA  TRP   114      49.495  16.260  52.468  1.00 25.00           C
ATOM    115  CA  LEU   115      51.857  15.563  49.537  1.00 25.00           C
ATOM    116  CA  VAL   116      50.553  18.670  47.715  1.00 25.00           C
ATOM    117  CA  ARG   117      51.100  20.776  50.867  1.00 25.00           C
ATOM    118  CA  ALA   118      54.671  19.425  51.180  1.00 25.00           C
ATOM    119  CA  MET   119      55.341  20.277  47.506  1.00 25.00           C
ATOM    120  CA  HIS   120      53.995  23.820  48.056  1.00 25.00           C
ATOM    121  CA  ALA   121      56.249  24.226  51.125  1.00 25.00           C
ATOM    122  CA  CYS   122      59.144  21.795  50.861  1.00 25.00           C
ATOM    123  CA  LEU   123      59.886  18.078  50.948  1.00 25.00           C
ATOM    124  CA  ASP   124      62.852  17.072  53.068  1.00 25.00           C
ATOM    125  CA  GLU   125      61.175  13.653  53.281  1.00 25.00           C
ATOM    126  CA  SER   126      61.363   9.874  53.878  1.00 25.00           C
ATOM    127  CA  GLU   127      57.552   9.715  54.227  1.00 25.00           C
ATOM    128  CA  ARG   128      57.146  11.672  50.960  1.00 25.00           C
ATOM    129  CA  ALA   129      59.556   9.274  49.196  1.00 25.00           C
ATOM    130  CA  LEU   130      57.583   6.274  50.528  1.00 25.00           C
ATOM    131  CA  LEU   131      54.317   7.836  49.280  1.00 25.00           C
ATOM    132  CA  ALA   132      55.882   8.417  45.833  1.00 25.00           C
ATOM    133  CA  ALA   133      57.063   4.776  45.729  1.00 25.00           C
ATOM    134  CA  ALA   134      53.546   3.582  46.663  1.00 25.00           C
ATOM    135  CA  GLY   135      52.045   5.761  43.895  1.00 25.00           C
ATOM    136  CA  PRO   136      54.542   4.320  41.373  1.00 25.00           C
ATOM    137  CA  LEU   137      53.634   0.765  42.468  1.00 25.00           C
ATOM    138  CA  LEU   138      49.911   1.563  42.061  1.00 25.00           C
ATOM    139  CA  THR   139      50.569   2.964  38.558  1.00 25.00           C
ATOM    140  CA  ARG   140      52.523  -0.197  37.634  1.00 25.00           C
ATOM    141  CA  LEU   141      49.644  -2.378  38.909  1.00 25.00           C
ATOM    142  CA  ALA   142      47.149  -0.337  36.841  1.00 25.00           C
ATOM    143  CA  GLN   143      49.353  -0.742  33.735  1.00 25.00           C
ATOM    144  CA  PHE   144      49.598   0.723  30.264  1.00 25.00           C
ATOM    145  CA  GLU   145      46.882   3.402  29.721  1.00 25.00           C
ATOM    146  CA  GLU   146      44.447   6.104  30.785  1.00 25.00           C
ATOM    147  CA  PRO   147      41.935   3.983  32.647  1.00 25.00           C
TER
END
