
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  113 (  113),  selected  113 , name T0372TS464_4_1
# Molecule2: number of CA atoms  298 ( 2427),  selected  113 , name T0372.pdb
# PARAMETERS: T0372TS464_4_1.T0372.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31        63 - 93          4.81    38.13
  LONGEST_CONTINUOUS_SEGMENT:    31       173 - 203         5.00    23.67
  LCS_AVERAGE:      8.40

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        72 - 93          1.83    36.75
  LCS_AVERAGE:      4.47

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       187 - 200         0.52    24.93
  LCS_AVERAGE:      2.90

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  298
LCS_GDT     D      42     D      42      3   16   17     0    4    4    4    5    5   14   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     T      43     T      43     13   16   17     6   10   12   15   15   16   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     Q      44     Q      44     13   16   17     6   10   12   13   14   15   17   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     F      45     F      45     13   16   17     6   10   12   13   14   18   20   23   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     A      46     A      46     13   16   17     5   10   12   13   14   18   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     V      47     V      47     13   16   17     5   10   12   13   14   15   16   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     I      48     I      48     13   16   17     6   10   12   13   14   15   15   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     D      49     D      49     13   16   17     4    8   12   13   14   15   15   16   28   29   32   34   39   39   42   43   45   46   48   50 
LCS_GDT     D      50     D      50     13   16   17     3    8   12   13   14   15   15   16   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     F      51     F      51     13   16   17     6   10   12   13   14   15   15   16   18   22   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     L      52     L      52     13   16   17     5   10   12   13   14   15   15   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     V      53     V      53     13   16   17     6   10   12   13   14   18   19   19   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     F      54     F      54     13   16   17     5   10   12   13   14   18   20   22   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     K      55     K      55     13   16   17     5    8   12   13   14   15   15   16   18   18   19   34   39   40   42   43   45   46   48   50 
LCS_GDT     F      56     F      56      7   16   17     4    7   10   13   14   15   15   16   18   18   18   19   32   35   40   43   45   46   48   50 
LCS_GDT     W      57     W      57      7   16   17     4    7   10   11   14   15   15   16   18   18   18   19   19   28   35   37   42   45   48   50 
LCS_GDT     A      63     A      63      4    7   31     3    4    4    6    6    7    7   11   16   17   21   23   24   29   29   31   31   32   33   35 
LCS_GDT     Y      64     Y      64      4    7   31     3    4    4    6    6   12   16   19   21   22   24   25   27   29   35   36   39   41   42   43 
LCS_GDT     M      65     M      65      4    7   31     3    4    4    6    6    7   10   13   16   26   26   29   31   35   35   37   39   40   42   43 
LCS_GDT     M      66     M      66      5    7   31     4    4    5    6    6    7    9   11   16   17   25   27   31   35   36   37   39   40   42   43 
LCS_GDT     P      67     P      67      5    7   31     4    4    5    6    6    7   10   13   16   18   24   26   27   30   35   37   39   40   42   43 
LCS_GDT     V      68     V      68      5    7   31     4    4    5    9   14   17   19   23   25   28   28   28   30   30   31   31   33   35   37   38 
LCS_GDT     G      69     G      69      5    7   31     4    4    5    6   13   17   20   22   25   28   28   29   30   30   31   31   33   35   37   37 
LCS_GDT     N      70     N      70      5    6   31     3    4    5    6    6   11   12   22   25   28   28   29   30   30   31   31   33   35   37   37 
LCS_GDT     G      71     G      71      4   21   31     3    3    5    9   14   18   21   23   25   28   28   29   30   30   31   31   33   35   37   37 
LCS_GDT     D      72     D      72     10   22   31     4    9   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   37 
LCS_GDT     L      73     L      73     11   22   31     4    9   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   37 
LCS_GDT     K      74     K      74     11   22   31     5    9   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   37 
LCS_GDT     A      75     A      75     11   22   31     6    9   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   37 
LCS_GDT     V      76     V      76     11   22   31     6    9   13   16   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   37 
LCS_GDT     L      77     L      77     11   22   31     6    9   13   16   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   37 
LCS_GDT     R      78     R      78     11   22   31     6    9   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   37 
LCS_GDT     K      79     K      79     11   22   31     6    9   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     L      80     L      80     11   22   31     4    8   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     I      81     I      81     11   22   31     4    8   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     E      82     E      82     11   22   31     4    8   13   16   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     D      83     D      83     11   22   31     4    8   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     A      84     A      84     11   22   31     3    8   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     D      85     D      85      9   22   31     3    7   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     K      86     K      86      9   22   31     6    9   12   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     E      87     E      87      9   22   31     3    8   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     K      88     K      88      9   22   31     4    7   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     H      89     H      89      9   22   31     4    7   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     N      90     N      90      9   22   31     4    7   12   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     F      91     F      91      9   22   31     4    6   13   17   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     C      92     C      92      4   22   31     3    5   10   15   21   21   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     M      93     M      93      4   22   31     3    5    6   14   14   20   22   23   25   28   28   29   30   30   31   31   33   35   37   38 
LCS_GDT     R     142     R     142      8   13   22     4    7    8   11   12   13   13   15   16   16   17   17   19   20   23   23   26   29   30   31 
LCS_GDT     N     143     N     143     10   13   25     6    7   10   11   12   13   13   15   16   17   18   23   24   26   27   27   27   28   29   31 
LCS_GDT     H     144     H     144     10   13   25     6    7   10   11   12   13   13   15   16   17   19   23   24   26   27   31   33   34   36   41 
LCS_GDT     I     145     I     145     10   13   25     6    7   10   11   12   13   13   15   16   17   19   23   24   26   27   31   33   36   39   41 
LCS_GDT     N     146     N     146     10   13   25     6    7   10   11   12   13   13   15   16   17   19   23   24   26   27   31   31   34   36   40 
LCS_GDT     R     147     R     147     10   13   25     6    7   10   11   12   13   13   15   16   17   19   23   24   26   27   31   33   34   36   41 
LCS_GDT     F     148     F     148     10   13   25     6    7   10   11   12   13   13   15   16   17   19   23   24   26   27   31   34   36   39   41 
LCS_GDT     R     149     R     149     10   13   25     4    7   10   11   12   13   13   15   16   17   19   23   24   26   27   31   34   36   39   41 
LCS_GDT     N     150     N     150     10   13   25     4    6   10   11   12   13   13   15   16   17   19   23   24   26   27   31   34   36   39   41 
LCS_GDT     T     151     T     151     10   13   25     4    6   10   11   12   13   13   15   16   16   19   23   24   26   27   29   33   35   39   41 
LCS_GDT     Y     152     Y     152     10   13   25     4    6   10   11   12   13   13   15   16   16   17   19   24   26   27   31   34   36   39   41 
LCS_GDT     P     153     P     153      7   13   25     3    4    8   10   12   13   13   15   16   17   19   23   24   26   27   31   34   36   39   41 
LCS_GDT     D     154     D     154      3   13   25     3    3    7   10   11   13   13   14   15   17   20   23   24   26   27   31   34   35   39   41 
LCS_GDT     A     173     A     173      8    9   31     7    8   13   15   15   17   19   21   25   27   32   33   39   40   42   43   45   46   48   50 
LCS_GDT     E     174     E     174      8    9   31     7    8    8    8    8   13   17   21   23   24   27   29   33   37   40   42   45   46   48   50 
LCS_GDT     W     175     W     175      8    9   31     7    8    8    8    8    9   17   21   23   24   26   30   34   38   42   43   45   46   48   50 
LCS_GDT     C     176     C     176      8    9   31     7    8    9   12   15   17   19   21   25   27   32   33   39   40   42   43   45   46   48   50 
LCS_GDT     K     177     K     177      8    9   31     7    8    8    9   12   15   18   18   23   26   27   29   33   37   40   42   44   46   48   50 
LCS_GDT     V     178     V     178      8    9   31     7    8    8    8    8   11   14   18   23   24   27   28   32   35   36   40   44   45   48   49 
LCS_GDT     N     179     N     179      8    9   31     7    8    8    8   14   17   18   21   23   26   29   32   36   40   42   43   45   46   48   50 
LCS_GDT     N     180     N     180      8    9   31     5    8    8    8   10   12   16   18   23   26   27   31   34   38   40   42   45   46   48   50 
LCS_GDT     C     181     C     181      4    4   31     3    4    4    5    6    7    7   10   16   19   21   24   28   33   36   41   43   45   48   50 
LCS_GDT     D     182     D     182      5    5   31     3    5    5    5    7    8    8   10   12   16   19   23   24   26   33   36   38   41   42   45 
LCS_GDT     Q     183     Q     183      5    5   31     3    5    6    6    7    9   14   15   16   20   23   26   28   34   37   42   44   46   48   50 
LCS_GDT     Q     184     Q     184      5    5   31     3    5    7    8   14   15   16   19   23   25   29   32   36   40   42   43   45   46   48   50 
LCS_GDT     E     185     E     185      5    5   31     3    5    5    5    8   11   15   19   23   27   32   33   39   40   42   43   45   46   48   50 
LCS_GDT     G     186     G     186      5   16   31     0    5    5    6   10   15   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     T     187     T     187     14   16   31     4   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     G     188     G     188     14   16   31     9   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     N     189     N     189     14   16   31     9   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     E     190     E     190     14   16   31     9   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     R     191     R     191     14   16   31     8   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     R     192     R     192     14   16   31     9   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     A     193     A     193     14   16   31     8   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     L     194     L     194     14   16   31     9   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     I     195     I     195     14   16   31     7   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     Y     196     Y     196     14   16   31     9   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     A     197     A     197     14   16   31     9   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     L     198     L     198     14   16   31     9   14   14   15   15   17   19   21   25   28   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     H     199     H     199     14   16   31     9   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     N     200     N     200     14   16   31     7   14   14   15   15   17   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     F     201     F     201      7   16   31     5    6    7    9   14   17   19   21   25   28   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     E     202     E     202      7   16   31     5    6    7   12   15   16   19   21   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     A     203     A     203      7    9   31     5    6    7    7    9   12   16   19   28   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     L     204     L     204      7    9   26     5    6    7    7    8    9   11   13   18   19   27   31   39   40   42   43   45   46   48   50 
LCS_GDT     G     205     G     205      7    9   26     5    6    7    7    8   10   12   17   25   29   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     L     206     L     206      7    9   26     3    6    7    8   14   15   19   21   25   28   32   34   39   40   42   43   45   46   48   50 
LCS_GDT     T     207     T     207      7    9   26     3    5    8   10   14   17   19   21   25   28   32   33   39   40   42   43   45   46   48   50 
LCS_GDT     G     208     G     208      5    9   26     3    4    5    7    8   15   18   21   23   26   27   29   32   36   39   42   44   45   48   50 
LCS_GDT     I     242     I     242      3    5   12     3    3    3    4    9    9   13   15   16   16   17   17   19   20   23   23   23   23   23   23 
LCS_GDT     D     243     D     243      4    5   12     3    4    4    4    5    6    8    8    9   12   12   17   19   20   23   23   23   36   39   41 
LCS_GDT     G     244     G     244      4    5   12     3    4    4    4    9    9   12   15   16   16   17   19   22   24   27   31   34   36   39   41 
LCS_GDT     A     245     A     245      4    5   12     3    4    4    4   10   12   13   15   16   16   17   18   22   24   27   31   34   36   39   41 
LCS_GDT     Y     246     Y     246      4    5   12     0    4    4    4    5    6    8    8   16   16   17   17   20   23   25   28   33   34   37   38 
LCS_GDT     E     268     E     268      3    7   12     3    3    3    4    6   11   13   14   15   17   18   19   22   26   28   30   33   35   37   38 
LCS_GDT     D     269     D     269      3    7   12     3    3    4    4    6    8   10   15   18   18   18   19   21   23   24   30   33   35   37   38 
LCS_GDT     L     270     L     270      5    7   12     4    4    5    5    6    6    7   15   18   18   18   19   19   23   24   27   29   34   37   38 
LCS_GDT     G     271     G     271      5    7   12     4    4    5    5    6    6    7    8    9   11   15   17   19   20   24   30   33   35   37   38 
LCS_GDT     I     272     I     272      5    7   12     4    4    5    5    6    6    7    7    8    8   10   14   17   20   24   25   29   32   36   38 
LCS_GDT     E     273     E     273      5    7   12     4    4    5    5    6    6    7    7    8    8   12   15   16   21   25   28   29   31   36   38 
LCS_GDT     G     274     G     274      5    7   12     0    4    5    5    6    6    7    7    7   12   16   18   22   23   26   28   32   34   36   38 
LCS_GDT     I     287     I     287      5    5    8     4    4    5    6    7    9   14   15   16   18   19   20   22   24   27   31   34   36   40   43 
LCS_GDT     L     288     L     288      5    5    8     4    4    5    6    7    9   14   15   16   18   20   27   31   32   36   37   39   40   42   43 
LCS_GDT     E     289     E     289      5    5    8     4    4    5    5    5    5    5   15   16   18   19   20   28   32   36   37   39   40   42   43 
LCS_GDT     K     290     K     290      5    5    8     4    4    5    6    7    9   14   15   16   18   20   27   31   32   36   37   39   40   42   43 
LCS_GDT     Y     291     Y     291      5    5    8     0    3    5    5    5    5    5    6    7    7   10   19   22   31   36   37   39   40   42   43 
LCS_AVERAGE  LCS_A:   5.26  (   2.90    4.47    8.40 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     14     14     17     21     21     22     23     28     29     32     34     39     40     42     43     45     46     48     50 
GDT PERCENT_CA   3.02   4.70   4.70   5.70   7.05   7.05   7.38   7.72   9.40   9.73  10.74  11.41  13.09  13.42  14.09  14.43  15.10  15.44  16.11  16.78
GDT RMS_LOCAL    0.33   0.52   0.52   1.31   1.64   1.64   1.83   2.13   3.27   3.38   3.63   3.84   4.46   4.70   4.85   4.94   5.25   5.41   5.64   5.98
GDT RMS_ALL_CA  24.86  24.93  24.93  38.19  37.37  37.37  36.75  36.52  24.28  24.09  24.01  23.84  23.58  23.42  23.45  23.42  23.35  23.33  23.28  23.19

#      Molecule1      Molecule2       DISTANCE
LGA    D      42      D      42         19.356
LGA    T      43      T      43         15.629
LGA    Q      44      Q      44         11.584
LGA    F      45      F      45          7.354
LGA    A      46      A      46         11.658
LGA    V      47      V      47         14.665
LGA    I      48      I      48         19.716
LGA    D      49      D      49         25.013
LGA    D      50      D      50         25.290
LGA    F      51      F      51         18.728
LGA    L      52      L      52         13.053
LGA    V      53      V      53          9.508
LGA    F      54      F      54          7.231
LGA    K      55      K      55         12.266
LGA    F      56      F      56         16.220
LGA    W      57      W      57         22.970
LGA    A      63      A      63         15.589
LGA    Y      64      Y      64         13.440
LGA    M      65      M      65         12.842
LGA    M      66      M      66         13.807
LGA    P      67      P      67          9.687
LGA    V      68      V      68          5.878
LGA    G      69      G      69          6.751
LGA    N      70      N      70          6.749
LGA    G      71      G      71          3.836
LGA    D      72      D      72          3.149
LGA    L      73      L      73          1.875
LGA    K      74      K      74          1.809
LGA    A      75      A      75          2.781
LGA    V      76      V      76          2.326
LGA    L      77      L      77          1.247
LGA    R      78      R      78          1.377
LGA    K      79      K      79          1.000
LGA    L      80      L      80          1.169
LGA    I      81      I      81          1.630
LGA    E      82      E      82          2.610
LGA    D      83      D      83          1.424
LGA    A      84      A      84          0.732
LGA    D      85      D      85          0.594
LGA    K      86      K      86          2.953
LGA    E      87      E      87          2.981
LGA    K      88      K      88          2.392
LGA    H      89      H      89          1.133
LGA    N      90      N      90          1.898
LGA    F      91      F      91          1.813
LGA    C      92      C      92          2.349
LGA    M      93      M      93          3.616
LGA    R     142      R     142         54.754
LGA    N     143      N     143         58.917
LGA    H     144      H     144         56.081
LGA    I     145      I     145         58.375
LGA    N     146      N     146         64.706
LGA    R     147      R     147         64.855
LGA    F     148      F     148         62.556
LGA    R     149      R     149         68.169
LGA    N     150      N     150         71.073
LGA    T     151      T     151         67.439
LGA    Y     152      Y     152         67.071
LGA    P     153      P     153         71.893
LGA    D     154      D     154         69.700
LGA    A     173      A     173         55.283
LGA    E     174      E     174         53.588
LGA    W     175      W     175         47.683
LGA    C     176      C     176         49.875
LGA    K     177      K     177         52.777
LGA    V     178      V     178         47.633
LGA    N     179      N     179         44.798
LGA    N     180      N     180         48.904
LGA    C     181      C     181         45.029
LGA    D     182      D     182         44.888
LGA    Q     183      Q     183         46.005
LGA    Q     184      Q     184         40.681
LGA    E     185      E     185         41.010
LGA    G     186      G     186         36.886
LGA    T     187      T     187         39.661
LGA    G     188      G     188         43.863
LGA    N     189      N     189         37.745
LGA    E     190      E     190         33.784
LGA    R     191      R     191         39.884
LGA    R     192      R     192         39.628
LGA    A     193      A     193         32.583
LGA    L     194      L     194         34.985
LGA    I     195      I     195         41.245
LGA    Y     196      Y     196         37.223
LGA    A     197      A     197         34.069
LGA    L     198      L     198         40.959
LGA    H     199      H     199         43.854
LGA    N     200      N     200         38.811
LGA    F     201      F     201         40.390
LGA    E     202      E     202         44.441
LGA    A     203      A     203         43.974
LGA    L     204      L     204         39.791
LGA    G     205      G     205         42.117
LGA    L     206      L     206         39.101
LGA    T     207      T     207         41.239
LGA    G     208      G     208         39.822
LGA    I     242      I     242         58.002
LGA    D     243      D     243         58.699
LGA    G     244      G     244         54.912
LGA    A     245      A     245         51.036
LGA    Y     246      Y     246         44.022
LGA    E     268      E     268         29.443
LGA    D     269      D     269         33.809
LGA    L     270      L     270         31.871
LGA    G     271      G     271         29.955
LGA    I     272      I     272         30.810
LGA    E     273      E     273         28.724
LGA    G     274      G     274         28.116
LGA    I     287      I     287         23.581
LGA    L     288      L     288         20.163
LGA    E     289      E     289         20.679
LGA    K     290      K     290         21.460
LGA    Y     291      Y     291         21.553

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  113  298    4.0     23    2.13     8.138     7.389     1.033

LGA_LOCAL      RMSD =  2.127  Number of atoms =   23  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 36.236  Number of atoms =  113 
Std_ALL_ATOMS  RMSD = 19.100  (standard rmsd on all 113 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.081067 * X  +  -0.006206 * Y  +   0.996689 * Z  +  -1.945827
  Y_new =  -0.188836 * X  +  -0.981965 * Y  +   0.009245 * Z  + 115.472244
  Z_new =   0.978657 * X  +  -0.188960 * Y  +  -0.080777 * Z  + -102.723328 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.974766    1.166826  [ DEG:  -113.1458     66.8542 ]
  Theta =  -1.363820   -1.777773  [ DEG:   -78.1411   -101.8589 ]
  Phi   =  -1.165290    1.976302  [ DEG:   -66.7662    113.2338 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS464_4_1                                
REMARK     2: T0372.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0372TS464_4_1.T0372.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  113  298   4.0   23   2.13   7.389    19.10
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS464_4_1
REMARK PARENT number 1
PFRMAT TS
TARGET T0372
PARENT N/A
ATOM      1  CA  ASP    42      34.285  58.332   3.420  1.00  0.00
ATOM      2  CA  THR    43      34.770  57.781   7.036  1.00  0.00
ATOM      3  CA  GLN    44      36.199  54.184   6.781  1.00  0.00
ATOM      4  CA  PHE    45      37.261  51.851   4.032  1.00  0.00
ATOM      5  CA  ALA    46      37.659  47.967   4.386  1.00  0.00
ATOM      6  CA  VAL    47      39.417  46.009   1.743  1.00  0.00
ATOM      7  CA  ILE    48      37.813  42.562   2.073  1.00  0.00
ATOM      8  CA  ASP    49      38.533  39.697  -0.291  1.00  0.00
ATOM      9  CA  ASP    50      36.525  40.515  -3.377  1.00  0.00
ATOM     10  CA  PHE    51      34.694  43.680  -2.154  1.00  0.00
ATOM     11  CA  LEU    52      35.591  47.000  -0.708  1.00  0.00
ATOM     12  CA  VAL    53      33.140  48.188   1.857  1.00  0.00
ATOM     13  CA  PHE    54      32.943  51.929   2.730  1.00  0.00
ATOM     14  CA  LYS    55      31.103  53.788   5.423  1.00  0.00
ATOM     15  CA  PHE    56      29.901  57.112   3.786  1.00  0.00
ATOM     16  CA  TRP    57      28.445  60.041   5.617  1.00  0.00
ATOM     17  CA  ALA    63      43.994  59.221  -1.421  1.00  0.00
ATOM     18  CA  TYR    64      43.009  60.670   1.939  1.00  0.00
ATOM     19  CA  MET    65      39.826  62.759   2.049  1.00  0.00
ATOM     20  CA  MET    66      39.331  65.341   4.792  1.00  0.00
ATOM     21  CA  PRO    67      35.609  66.097   5.053  1.00  0.00
ATOM     22  CA  VAL    68      32.695  63.753   4.438  1.00  0.00
ATOM     23  CA  GLY    69      30.176  66.030   2.745  1.00  0.00
ATOM     24  CA  ASN    70      28.692  65.454  -0.702  1.00  0.00
ATOM     25  CA  GLY    71      31.735  66.780  -2.589  1.00  0.00
ATOM     26  CA  ASP    72      33.953  64.656  -0.363  1.00  0.00
ATOM     27  CA  LEU    73      31.836  61.494  -0.712  1.00  0.00
ATOM     28  CA  LYS    74      31.208  61.757  -4.549  1.00  0.00
ATOM     29  CA  ALA    75      34.888  62.227  -4.816  1.00  0.00
ATOM     30  CA  VAL    76      34.613  58.556  -3.896  1.00  0.00
ATOM     31  CA  LEU    77      32.172  57.911  -6.779  1.00  0.00
ATOM     32  CA  ARG    78      34.562  59.603  -9.237  1.00  0.00
ATOM     33  CA  LYS    79      37.427  57.309  -8.228  1.00  0.00
ATOM     34  CA  LEU    80      36.287  53.814  -6.678  1.00  0.00
ATOM     35  CA  ILE    81      35.940  54.182 -10.482  1.00  0.00
ATOM     36  CA  GLU    82      39.669  54.989 -10.826  1.00  0.00
ATOM     37  CA  ASP    83      40.688  51.825  -8.962  1.00  0.00
ATOM     38  CA  ALA    84      38.237  49.171 -10.039  1.00  0.00
ATOM     39  CA  ASP    85      37.105  50.179 -13.494  1.00  0.00
ATOM     40  CA  LYS    86      39.607  50.630 -16.084  1.00  0.00
ATOM     41  CA  GLU    87      39.959  47.273 -14.344  1.00  0.00
ATOM     42  CA  LYS    88      36.462  45.866 -14.915  1.00  0.00
ATOM     43  CA  HIS    89      36.386  45.606 -11.158  1.00  0.00
ATOM     44  CA  ASN    90      33.264  46.007  -8.949  1.00  0.00
ATOM     45  CA  PHE    91      33.254  48.785  -6.364  1.00  0.00
ATOM     46  CA  CYS    92      31.123  49.206  -3.263  1.00  0.00
ATOM     47  CA  MET    93      30.320  52.535  -1.621  1.00  0.00
ATOM     48  CA  ARG   142      25.354  65.527 -10.575  1.00  0.00
ATOM     49  CA  ASN   143      28.793  66.925 -11.191  1.00  0.00
ATOM     50  CA  HIS   144      30.212  63.405 -11.421  1.00  0.00
ATOM     51  CA  ILE   145      27.915  62.809 -14.411  1.00  0.00
ATOM     52  CA  ASN   146      29.604  65.803 -16.084  1.00  0.00
ATOM     53  CA  ARG   147      33.100  64.490 -15.322  1.00  0.00
ATOM     54  CA  PHE   148      32.216  60.965 -16.440  1.00  0.00
ATOM     55  CA  ARG   149      32.276  62.003 -20.097  1.00  0.00
ATOM     56  CA  ASN   150      36.042  62.074 -19.591  1.00  0.00
ATOM     57  CA  THR   151      36.138  58.870 -17.573  1.00  0.00
ATOM     58  CA  TYR   152      34.139  56.420 -19.617  1.00  0.00
ATOM     59  CA  PRO   153      32.122  56.177 -22.872  1.00  0.00
ATOM     60  CA  ASP   154      29.475  54.094 -21.126  1.00  0.00
ATOM     61  CA  ALA   173      10.208  62.140  -1.162  1.00  0.00
ATOM     62  CA  GLU   174      11.412  58.592  -1.325  1.00  0.00
ATOM     63  CA  TRP   175      13.155  58.914   1.999  1.00  0.00
ATOM     64  CA  CYS   176       9.827  60.211   3.428  1.00  0.00
ATOM     65  CA  LYS   177       8.027  56.996   2.436  1.00  0.00
ATOM     66  CA  VAL   178      10.810  54.847   3.950  1.00  0.00
ATOM     67  CA  ASN   179      10.473  56.709   7.184  1.00  0.00
ATOM     68  CA  ASN   180       6.682  56.381   7.054  1.00  0.00
ATOM     69  CA  CYS   181       6.734  52.648   6.332  1.00  0.00
ATOM     70  CA  ASP   182       9.407  51.831   8.808  1.00  0.00
ATOM     71  CA  GLN   183       7.972  54.184  11.456  1.00  0.00
ATOM     72  CA  GLN   184      11.477  55.478  12.140  1.00  0.00
ATOM     73  CA  GLU   185      12.243  59.097  11.412  1.00  0.00
ATOM     74  CA  GLY   186      15.494  60.744  10.405  1.00  0.00
ATOM     75  CA  THR   187      17.581  63.807  11.194  1.00  0.00
ATOM     76  CA  GLY   188      18.337  66.504   8.738  1.00  0.00
ATOM     77  CA  ASN   189      21.844  65.309   8.714  1.00  0.00
ATOM     78  CA  GLU   190      21.345  61.697   7.681  1.00  0.00
ATOM     79  CA  ARG   191      18.927  62.468   4.832  1.00  0.00
ATOM     80  CA  ARG   192      21.534  64.932   3.682  1.00  0.00
ATOM     81  CA  ALA   193      24.174  62.207   4.001  1.00  0.00
ATOM     82  CA  LEU   194      21.975  59.810   2.019  1.00  0.00
ATOM     83  CA  ILE   195      21.125  62.578  -0.431  1.00  0.00
ATOM     84  CA  TYR   196      24.621  62.401  -1.884  1.00  0.00
ATOM     85  CA  ALA   197      24.683  58.598  -2.061  1.00  0.00
ATOM     86  CA  LEU   198      21.351  58.362  -3.898  1.00  0.00
ATOM     87  CA  HIS   199      22.699  60.927  -6.369  1.00  0.00
ATOM     88  CA  ASN   200      25.838  58.898  -7.066  1.00  0.00
ATOM     89  CA  PHE   201      26.520  56.925 -10.130  1.00  0.00
ATOM     90  CA  GLU   202      22.944  56.603 -11.467  1.00  0.00
ATOM     91  CA  ALA   203      23.889  58.704 -14.478  1.00  0.00
ATOM     92  CA  LEU   204      26.492  56.055 -15.198  1.00  0.00
ATOM     93  CA  GLY   205      24.587  52.788 -15.132  1.00  0.00
ATOM     94  CA  LEU   206      25.584  51.929 -11.567  1.00  0.00
ATOM     95  CA  THR   207      22.713  50.759  -9.353  1.00  0.00
ATOM     96  CA  GLY   208      23.113  52.702  -6.126  1.00  0.00
ATOM     97  CA  ILE   242      37.260  52.376 -18.525  1.00  0.00
ATOM     98  CA  ASP   243      33.475  52.256 -19.171  1.00  0.00
ATOM     99  CA  GLY   244      32.375  54.164 -15.955  1.00  0.00
ATOM    100  CA  ALA   245      30.642  51.056 -14.599  1.00  0.00
ATOM    101  CA  TYR   246      32.223  49.025 -11.773  1.00  0.00
ATOM    102  CA  GLU   268      13.013  55.789  -3.868  1.00  0.00
ATOM    103  CA  ASP   269      13.835  58.768  -6.039  1.00  0.00
ATOM    104  CA  LEU   270      16.774  57.131  -7.830  1.00  0.00
ATOM    105  CA  GLY   271      15.591  53.520  -8.028  1.00  0.00
ATOM    106  CA  ILE   272      18.673  52.457  -6.097  1.00  0.00
ATOM    107  CA  GLU   273      18.300  49.236  -4.110  1.00  0.00
ATOM    108  CA  GLY   274      19.758  47.905  -0.841  1.00  0.00
ATOM    109  CA  ILE   287      37.758  59.702   4.523  1.00  0.00
ATOM    110  CA  LEU   288      38.160  61.459   7.861  1.00  0.00
ATOM    111  CA  GLU   289      35.136  63.449   9.137  1.00  0.00
ATOM    112  CA  LYS   290      35.357  65.230  12.463  1.00  0.00
ATOM    113  CA  TYR   291      31.684  64.855  13.309  1.00  0.00
TER
END
