
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  144 (  144),  selected  144 , name T0370TS168_3-D1
# Molecule2: number of CA atoms  144 ( 1104),  selected  144 , name T0370_D1.pdb
# PARAMETERS: T0370TS168_3-D1.T0370_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22         8 - 29          4.93    21.83
  LCS_AVERAGE:     12.39

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15         8 - 22          1.69    17.45
  LCS_AVERAGE:      5.41

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14         8 - 21          0.35    16.94
  LCS_AVERAGE:      3.49

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     T       8     T       8     14   15   22     8   14   14   16   16   16   18   22   24   25   29   32   33   34   38   39   44   48   55   64 
LCS_GDT     A       9     A       9     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   45   50   57   64 
LCS_GDT     K      10     K      10     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   45   50   57   64 
LCS_GDT     Q      11     Q      11     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   57   64 
LCS_GDT     R      12     R      12     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   57   64 
LCS_GDT     I      13     I      13     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   45   50   57   64 
LCS_GDT     Q      14     Q      14     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   57   64 
LCS_GDT     D      15     D      15     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   55   60 
LCS_GDT     T      16     T      16     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   57   64 
LCS_GDT     L      17     L      17     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   57   64 
LCS_GDT     N      18     N      18     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   52   59 
LCS_GDT     R      19     R      19     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   52   59 
LCS_GDT     L      20     L      20     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   54   60 
LCS_GDT     E      21     E      21     14   15   22    13   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   52   57 
LCS_GDT     L      22     L      22      3   15   22     3    3    5    5    7   12   18   22   24   25   29   32   33   34   38   41   43   47   48   52 
LCS_GDT     D      23     D      23      3    5   22     3    3    4    5    7    9   11   13   16   18   21   26   30   33   34   37   42   45   48   52 
LCS_GDT     V      24     V      24      3    5   22     3    4    6    7    9    9   11   13   15   18   20   22   27   28   32   37   42   45   48   52 
LCS_GDT     D      25     D      25      3    5   22     3    3    5    8    8    9   13   14   15   18   20   23   27   29   33   37   41   45   48   58 
LCS_GDT     A      26     A      26      3    4   22     3    4    5    9   10   12   13   14   17   19   21   25   27   30   34   39   44   48   51   59 
LCS_GDT     W      27     W      27      3    3   22     3    3    7    9   10   12   13   14   17   19   20   24   26   30   33   37   43   45   48   54 
LCS_GDT     V      28     V      28      3    3   22     3    5    5    9   10   12   13   14   17   19   21   25   27   30   34   39   44   48   51   59 
LCS_GDT     S      29     S      29      3    4   22     1    3    4    5    7    8   15   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     T      30     T      30      3    4   15     3    4    6    7    8    9   12   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     A      31     A      31      4    5   15     3    3    4    5    6    8   15   15   18   21   24   28   32   35   37   41   45   50   55   64 
LCS_GDT     G      32     G      32      4    5   15     3    3    6    7    8    9   12   15   18   21   24   28   32   35   37   41   45   50   55   64 
LCS_GDT     A      33     A      33      4    5   15     3    4    5    5    8    8   10   12   15   17   22   26   32   35   37   41   45   50   57   64 
LCS_GDT     D      34     D      34      4    8   15     3    4    5    7    8   10   12   13   14   15   17   21   25   30   35   41   45   50   57   64 
LCS_GDT     G      35     G      35      4    8   15     3    4    5    7    8   10   12   13   14   15   18   18   21   29   35   38   42   47   57   64 
LCS_GDT     G      36     G      36      4    8   15     3    5    5    7    8   10   12   13   14   15   18   18   21   22   27   34   42   47   55   64 
LCS_GDT     A      37     A      37      4    8   15     3    5    5    5    7   10   12   13   14   15   18   18   20   22   27   37   42   47   55   60 
LCS_GDT     P      38     P      38      4    8   15     3    3    5    6    8   10   12   13   14   15   18   18   20   22   27   33   42   47   55   60 
LCS_GDT     Y      39     Y      39      4    8   15     3    5    5    7    8   10   12   13   14   15   18   18   21   23   27   33   42   47   55   60 
LCS_GDT     L      40     L      40      4    8   15     0    5    5    5    7   10   12   13   14   15   18   18   19   22   25   29   36   41   51   60 
LCS_GDT     V      41     V      41      3    8   15     3    5    5    7    8   10   12   13   14   15   18   18   21   22   26   32   37   47   55   60 
LCS_GDT     P      42     P      42      3    5   15     3    3    4    5    6    7    9   11   13   15   18   19   22   30   35   39   45   50   57   64 
LCS_GDT     L      43     L      43      3    6   17     3    4    5    6    6    8    9   11   12   15   18   23   25   29   35   39   44   48   55   60 
LCS_GDT     S      44     S      44      4    6   17     3    4    4    5    6    7    9   11   12   14   20   24   26   29   33   35   40   45   50   59 
LCS_GDT     Y      45     Y      45      4    6   17     3    4    4    5    6    6    9    9   12   14   20   24   26   30   35   39   45   50   54   64 
LCS_GDT     L      46     L      46      4    6   17     3    3    4    5    6    7   11   13   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     W      47     W      47      4    6   17     3    5    5    7    7    9   12   12   16   18   22   28   32   35   37   41   45   50   55   64 
LCS_GDT     D      48     D      48      4    6   17     3    5    5    5    6    6   12   13   16   19   22   26   32   35   37   39   45   50   53   58 
LCS_GDT     G      49     G      49      4    7   17     3    5    5    5    6    9   12   13   17   19   22   28   32   35   37   41   45   50   54   63 
LCS_GDT     E      50     E      50      5    9   17     3    5    6    7    8   10   12   14   17   19   22   28   32   35   37   41   45   50   54   63 
LCS_GDT     T      51     T      51      5    9   17     3    5    6    7    9   10   12   13   17   19   22   28   32   35   37   41   45   50   57   64 
LCS_GDT     F      52     F      52      5    9   17     3    5    6    7    9   12   15   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     L      53     L      53      5    9   17     3    4    5    6    9    9   11   13   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     V      54     V      54      5    9   17     3    5    6    7    9   10   11   13   18   21   24   28   32   35   38   41   45   50   57   64 
LCS_GDT     A      55     A      55      5    9   17     3    5    6    7    9   10   11   13   17   19   21   27   29   31   36   41   43   50   53   58 
LCS_GDT     T      56     T      56      5    9   17     3    5    6    7    9   10   11   13   18   21   24   27   32   35   38   41   45   50   55   64 
LCS_GDT     P      57     P      57      5    9   17     3    4    5    6    9    9   12   13   18   20   24   26   31   35   37   41   45   50   57   64 
LCS_GDT     A      58     A      58      4    9   18     3    3    5    7    9    9   12   17   20   24   27   32   33   34   38   41   45   50   57   64 
LCS_GDT     A      59     A      59      4    5   18     3    3    5    6    8    9   11   13   24   25   29   32   33   34   38   41   44   50   57   64 
LCS_GDT     S      60     S      60      3    5   18     3    3    4    6    8    9   16   18   21   24   29   32   33   34   38   41   45   50   57   64 
LCS_GDT     P      61     P      61      4    5   18     3    4    4    6   10   11   13   14   15   17   20   24   29   33   36   41   43   47   57   64 
LCS_GDT     T      62     T      62      4    5   18     3    4    4    4    5    7    9   11   12   15   15   16   19   21   24   31   34   39   47   49 
LCS_GDT     G      63     G      63      4    9   18     3    4    4    6   10   11   13   14   15   17   17   20   28   32   36   41   43   47   48   52 
LCS_GDT     R      64     R      64      4    9   18     3    4    4    6   10   12   16   18   24   25   29   32   33   34   38   41   44   48   52   57 
LCS_GDT     N      65     N      65      4    9   18     3    4    4    6   10   12   18   22   24   25   29   32   33   34   38   41   44   48   52   57 
LCS_GDT     L      66     L      66      4    9   20     4    4    6    7   10   12   18   22   24   25   29   32   33   34   38   41   44   48   52   57 
LCS_GDT     S      67     S      67      4    9   20     4    4    6    7   10   11   13   15   17   20   29   32   33   34   38   41   44   48   52   57 
LCS_GDT     E      68     E      68      4    9   20     4    4    6    7   10   11   17   17   19   21   29   32   33   34   38   41   44   48   52   57 
LCS_GDT     T      69     T      69      4    9   20     4    4    6    7   10   16   18   22   24   25   29   32   33   34   38   41   44   48   52   57 
LCS_GDT     G      70     G      70      5    9   20     3    5    5    7   10   16   18   22   24   25   29   32   33   34   38   41   44   48   52   57 
LCS_GDT     R      71     R      71      5    9   20     6   15   15   16   16   16   18   20   23   25   29   32   33   34   38   41   44   48   52   58 
LCS_GDT     V      72     V      72      5    8   20     5   15   15   16   16   16   18   22   24   25   29   32   33   34   38   41   44   48   57   64 
LCS_GDT     R      73     R      73      5    8   20     3    5    5    7    9   11   13   19   20   22   25   28   33   34   38   41   43   48   57   64 
LCS_GDT     L      74     L      74      5    7   20     3    5    5    7    8   10   18   20   22   25   29   32   33   34   38   41   43   47   53   64 
LCS_GDT     G      75     G      75      4    6   20     3    3    5    6    7   12   18   22   24   25   29   32   33   34   38   41   43   47   52   57 
LCS_GDT     I      76     I      76      4    6   20     3    3    5    6    6    8    9   11   13   18   22   27   29   33   38   41   44   48   52   57 
LCS_GDT     G      77     G      77      4    6   20     3    4    5    6    6    8    9   11   13   14   19   22   25   28   35   40   44   48   52   59 
LCS_GDT     P      78     P      78      4    6   20     3    4    5    6    6    7    9   11   13   15   18   22   25   28   32   37   43   47   49   57 
LCS_GDT     T      79     T      79      4    6   20     3    4    5    6    6    8   11   13   17   20   22   27   29   33   36   41   43   47   48   52 
LCS_GDT     R      80     R      80      4    7   20     3    4    5    6    6    7   11   13   16   18   22   27   29   34   38   41   43   47   48   52 
LCS_GDT     D      81     D      81      4    7   20     3    4    5    6    7    9   11   13   16   18   21   27   29   34   38   41   43   47   48   52 
LCS_GDT     L      82     L      82      4    7   20     3    3    4    6    7   12   18   22   24   25   29   32   33   34   38   41   43   47   48   52 
LCS_GDT     V      83     V      83      4    7   20     3    3    5    6    7    9   11   15   17   22   28   32   33   34   38   41   43   47   48   52 
LCS_GDT     L      84     L      84      4    7   20     3    4    5    7    8   10   12   14   16   18   20   24   30   30   32   36   40   46   48   53 
LCS_GDT     V      85     V      85      4    7   20     3    4    5    7    9   11   13   14   16   18   19   25   26   29   32   36   40   46   49   58 
LCS_GDT     E      86     E      86      4    7   18     3    4    4    6    7    9   11   13   16   16   20   24   26   29   32   35   38   43   46   51 
LCS_GDT     G      87     G      87      3    6   18     2    3    4    5    6    6   10   11   13   16   20   24   26   29   32   35   38   43   45   55 
LCS_GDT     T      88     T      88      3    6   18     0    3    4    5    7    7   11   13   17   19   21   25   26   30   32   38   42   48   57   64 
LCS_GDT     A      89     A      89      4    6   18     3    4    4    6    8   12   15   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     L      90     L      90      4    6   18     3    4    4    6    8   12   15   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     P      91     P      91      5    6   18     3    5    6    7   10   12   15   15   18   21   24   28   31   35   37   40   45   50   55   64 
LCS_GDT     L      92     L      92      5    6   18     3    4    5    7    8   12   15   15   18   20   24   26   29   35   37   41   45   50   57   64 
LCS_GDT     E      93     E      93      5    6   18     3    4    5    8    9   11   13   15   18   20   22   22   26   29   33   40   42   46   52   57 
LCS_GDT     P      94     P      94      5    6   18     3    4    5    7    8    9   12   14   16   19   19   22   24   29   32   36   40   46   52   57 
LCS_GDT     A      95     A      95      5    7   18     3    4    6    9   10   12   15   15   18   20   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     G      96     G      96      6    7   18     3    4    7    7    8   12   15   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     L      97     L      97      6    7   18     4    5    7    9   10   12   15   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     P      98     P      98      6    7   18     4    5    7    9   10   12   15   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     D      99     D      99      6    7   18     4    5    7    9   10   12   15   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     G     100     G     100      6    7   18     4    5    7    9   10   12   15   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     V     101     V     101      6    7   18     4    5    7    9   10   12   15   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     G     102     G     102      4    6   18     3    4    4    5    6    8    9    9   12   14   15   18   21   26   29   31   39   44   52   56 
LCS_GDT     D     103     D     103      4    6   18     3    4    4    5    6    7    9   12   13   14   16   19   22   28   32   35   37   43   49   59 
LCS_GDT     T     104     T     104      4    6   18     1    3    5    6    8    9   11   13   17   18   20   26   29   30   33   39   44   48   57   64 
LCS_GDT     F     105     F     105      3    5   18     0    3    5    6    8   11   13   14   17   19   21   26   29   31   37   41   45   50   57   64 
LCS_GDT     A     106     A     106      3    4   18     0    3    3    4    6    8   11   13   17   18   20   23   29   30   33   39   44   48   57   64 
LCS_GDT     E     107     E     107      3    5   17     3    3    5    9   10   11   12   15   16   22   24   26   27   29   33   36   44   48   52   57 
LCS_GDT     K     108     K     108      3    7   14     3    3    3    5    7    7    9    9   10   22   24   26   27   29   33   36   44   48   52   57 
LCS_GDT     T     109     T     109      3    7   14     3    3    4    6    7    7    9   14   15   17   20   26   27   29   33   36   44   48   52   57 
LCS_GDT     G     110     G     110      3    7   14     0    3    3    6    7    7    9   14   15   22   24   26   27   29   33   36   44   48   52   57 
LCS_GDT     F     111     F     111      3    7   18     2    3    4    6    8   10   12   15   16   22   24   26   29   30   34   38   44   48   57   64 
LCS_GDT     D     112     D     112      3    7   19     2    3    4    6    7    7   12   15   16   22   24   26   27   31   37   41   45   49   57   64 
LCS_GDT     P     113     P     113      4    7   19     3    4    4    9   10   11   12   15   16   22   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     R     114     R     114      4    7   19     3    4    4    6    7    9   10   11   15   17   19   26   29   32   37   41   45   50   55   64 
LCS_GDT     R     115     R     115      4    7   19     3    4    5    5    7    9   10   11   15   20   24   26   32   35   37   41   45   50   54   64 
LCS_GDT     L     116     L     116      4    7   19     3    4    5    5    7    9   10   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     T     117     T     117      4    7   19     3    3    5    6    8   10   12   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     T     118     T     118      4    7   19     3    4    6    7    8   10   12   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     S     119     S     119      4    9   19     3    3    5    7    8    9   12   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     Y     120     Y     120      4    9   19     3    4    5    7    9    9   12   15   18   21   24   28   32   35   37   41   45   50   57   64 
LCS_GDT     L     121     L     121      3    9   19     3    4    5    7    9   10   12   13   17   19   21   26   29   33   37   41   45   50   57   64 
LCS_GDT     Y     122     Y     122      3    9   19     3    3    5    7    9    9   12   13   17   19   24   26   29   30   35   40   45   50   57   64 
LCS_GDT     F     123     F     123      4    9   19     3    5    5    7    9    9   12   13   17   19   24   26   29   30   34   38   42   47   52   58 
LCS_GDT     R     124     R     124      4    9   19     3    4    4    7    8    9   12   15   17   22   24   26   29   30   34   37   40   44   48   52 
LCS_GDT     I     125     I     125      4    9   19     3    4    5    7    9   11   12   15   17   22   24   26   29   30   34   37   40   44   48   52 
LCS_GDT     S     126     S     126      4    9   19     3    4    5    7    9    9   12   13   15   18   21   26   29   30   32   35   39   44   48   50 
LCS_GDT     P     127     P     127      3    9   19     3    4    5    7    9    9   12   13   17   18   21   26   29   30   34   37   39   44   48   52 
LCS_GDT     R     128     R     128      3    9   19     3    3    4    6    9    9   11   14   17   22   24   27   30   33   36   41   43   47   48   52 
LCS_GDT     R     129     R     129      3    4   19     3    3    4    4    5    6    7   11   17   24   28   32   33   34   38   41   43   47   49   52 
LCS_GDT     V     130     V     130      3    4   19     0    3    4    4    5    6   10   12   14   14   17   21   26   30   34   37   42   47   49   52 
LCS_GDT     Q     131     Q     131      3    3   18     0    3    3    5    6    7   10   12   14   15   21   24   25   30   34   37   41   46   52   58 
LCS_GDT     A     132     A     132      3    3   15     0    3    3    3    3    5   10   12   15   18   22   24   26   30   37   40   44   48   57   64 
LCS_GDT     W     133     W     133      3    4   13     0    3    3    4    4    5    6    9   11   14   20   23   26   30   34   38   42   46   52   64 
LCS_GDT     R     134     R     134      3    8   13     1    3    3    5    5    6    9   10   10   17   22   23   26   31   37   40   42   48   57   64 
LCS_GDT     E     135     E     135      6    9   13     4    5    7    8    9    9   10   11   12   16   17   18   24   28   32   37   40   48   57   64 
LCS_GDT     A     136     A     136      6    9   13     4    5    7    8    9    9   10   11   12   16   16   18   21   24   26   32   39   46   48   57 
LCS_GDT     N     137     N     137      6    9   13     4    5    7    8    9    9    9   10   10   16   16   17   21   26   31   36   40   46   48   53 
LCS_GDT     E     138     E     138      6    9   13     4    5    7    8    9    9    9   10   10   20   22   23   26   30   37   40   42   48   57   64 
LCS_GDT     L     139     L     139      6    9   13     4    5    7    8    9    9    9   10   11   13   17   20   26   31   37   41   45   50   57   64 
LCS_GDT     S     140     S     140      6    9   13     4    5    7    8    9    9    9   10   10   16   16   20   23   26   31   36   41   46   52   64 
LCS_GDT     G     141     G     141      5    9   13     3    5    5    8    9   10   12   13   16   19   19   22   26   30   34   38   42   46   52   56 
LCS_GDT     R     142     R     142      5    9   13     4    5    7    8    9   12   15   15   18   20   22   27   32   35   37   40   43   50   57   64 
LCS_GDT     E     143     E     143      3    9   13     3    3    4    6    9    9    9   15   16   20   22   25   26   31   37   40   44   49   57   64 
LCS_GDT     L     144     L     144      3    7   13     3    3    5    6    6    8    9   12   13   14   16   19   22   25   29   31   37   43   47   53 
LCS_GDT     M     145     M     145      4    7   13     3    4    5    6    7   11   11   12   13   14   16   20   22   27   31   36   44   47   52   57 
LCS_GDT     R     146     R     146      4    7   13     3    4    5    6    7    8    9   12   13   14   16   21   25   27   31   36   44   48   52   57 
LCS_GDT     D     147     D     147      4    7   13     3    4    5    6    7    8    9   12   13   15   17   21   25   28   33   36   44   48   52   57 
LCS_GDT     G     148     G     148      4    7   12     3    4    6    6    8    8   10   12   13   19   21   25   26   28   33   36   44   48   52   57 
LCS_GDT     E     149     E     149      4    5   12     3    4    5    6    6    7    8   10   13   14   16   21   25   29   33   36   44   48   52   57 
LCS_GDT     W     150     W     150      4    5   12     3    4    4    5    6    7    9   11   13   14   15   18   20   23   32   36   40   46   49   52 
LCS_GDT     L     151     L     151      3    5   12     3    3    3    4    5    7    9   11   14   14   16   18   21   23   25   28   36   46   49   50 
LCS_AVERAGE  LCS_A:   7.10  (   3.49    5.41   12.39 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     15     15     16     16     16     18     22     24     25     29     32     33     35     38     41     45     50     57     64 
GDT PERCENT_CA   9.03  10.42  10.42  11.11  11.11  11.11  12.50  15.28  16.67  17.36  20.14  22.22  22.92  24.31  26.39  28.47  31.25  34.72  39.58  44.44
GDT RMS_LOCAL    0.23   0.54   0.54   0.68   0.68   0.68   1.37   2.67   2.95   3.09   3.56   3.81   6.76   5.08   4.61   5.08   6.12   6.51   7.79   8.05
GDT RMS_ALL_CA  16.91  16.62  16.62  16.54  16.54  16.54  16.85  17.61  17.81  17.91  18.35  18.46  18.46  14.65  18.39  18.72  14.47  14.27  13.00  12.98

#      Molecule1      Molecule2       DISTANCE
LGA    T       8      T       8          3.367
LGA    A       9      A       9          1.946
LGA    K      10      K      10          1.923
LGA    Q      11      Q      11          1.617
LGA    R      12      R      12          1.267
LGA    I      13      I      13          0.332
LGA    Q      14      Q      14          0.301
LGA    D      15      D      15          1.247
LGA    T      16      T      16          1.130
LGA    L      17      L      17          1.501
LGA    N      18      N      18          2.017
LGA    R      19      R      19          2.640
LGA    L      20      L      20          2.846
LGA    E      21      E      21          3.333
LGA    L      22      L      22          3.727
LGA    D      23      D      23          9.949
LGA    V      24      V      24         12.260
LGA    D      25      D      25         11.481
LGA    A      26      A      26         13.121
LGA    W      27      W      27         17.888
LGA    V      28      V      28         15.094
LGA    S      29      S      29         15.680
LGA    T      30      T      30         19.631
LGA    A      31      A      31         23.864
LGA    G      32      G      32         26.244
LGA    A      33      A      33         25.229
LGA    D      34      D      34         25.153
LGA    G      35      G      35         24.681
LGA    G      36      G      36         22.858
LGA    A      37      A      37         19.621
LGA    P      38      P      38         16.122
LGA    Y      39      Y      39         13.467
LGA    L      40      L      40         10.345
LGA    V      41      V      41         11.746
LGA    P      42      P      42         13.959
LGA    L      43      L      43         17.172
LGA    S      44      S      44         18.164
LGA    Y      45      Y      45         18.171
LGA    L      46      L      46         19.598
LGA    W      47      W      47         20.790
LGA    D      48      D      48         26.083
LGA    G      49      G      49         22.195
LGA    E      50      E      50         19.106
LGA    T      51      T      51         14.944
LGA    F      52      F      52         10.164
LGA    L      53      L      53          9.718
LGA    V      54      V      54          7.331
LGA    A      55      A      55          8.775
LGA    T      56      T      56          7.259
LGA    P      57      P      57          8.092
LGA    A      58      A      58          5.159
LGA    A      59      A      59          4.814
LGA    S      60      S      60          6.067
LGA    P      61      P      61         10.014
LGA    T      62      T      62         13.348
LGA    G      63      G      63          9.998
LGA    R      64      R      64          4.851
LGA    N      65      N      65          3.665
LGA    L      66      L      66          3.538
LGA    S      67      S      67          6.505
LGA    E      68      E      68          6.189
LGA    T      69      T      69          3.692
LGA    G      70      G      70          3.227
LGA    R      71      R      71          4.840
LGA    V      72      V      72          3.866
LGA    R      73      R      73          6.586
LGA    L      74      L      74          5.345
LGA    G      75      G      75          3.501
LGA    I      76      I      76          8.062
LGA    G      77      G      77         11.200
LGA    P      78      P      78         12.966
LGA    T      79      T      79          8.437
LGA    R      80      R      80          8.629
LGA    D      81      D      81          8.313
LGA    L      82      L      82          3.733
LGA    V      83      V      83          6.026
LGA    L      84      L      84         10.134
LGA    V      85      V      85         11.172
LGA    E      86      E      86         16.623
LGA    G      87      G      87         16.413
LGA    T      88      T      88         19.693
LGA    A      89      A      89         19.239
LGA    L      90      L      90         24.974
LGA    P      91      P      91         27.030
LGA    L      92      L      92         28.762
LGA    E      93      E      93         33.075
LGA    P      94      P      94         33.738
LGA    A      95      A      95         35.721
LGA    G      96      G      96         38.263
LGA    L      97      L      97         33.599
LGA    P      98      P      98         36.579
LGA    D      99      D      99         39.677
LGA    G     100      G     100         36.145
LGA    V     101      V     101         30.238
LGA    G     102      G     102         29.793
LGA    D     103      D     103         27.031
LGA    T     104      T     104         21.192
LGA    F     105      F     105         18.891
LGA    A     106      A     106         18.073
LGA    E     107      E     107         18.172
LGA    K     108      K     108         15.227
LGA    T     109      T     109         14.460
LGA    G     110      G     110         18.436
LGA    F     111      F     111         22.196
LGA    D     112      D     112         25.032
LGA    P     113      P     113         24.814
LGA    R     114      R     114         29.820
LGA    R     115      R     115         27.470
LGA    L     116      L     116         21.892
LGA    T     117      T     117         20.555
LGA    T     118      T     118         16.076
LGA    S     119      S     119         17.011
LGA    Y     120      Y     120         12.035
LGA    L     121      L     121         13.326
LGA    Y     122      Y     122         14.822
LGA    F     123      F     123         13.373
LGA    R     124      R     124         12.686
LGA    I     125      I     125         13.130
LGA    S     126      S     126         16.302
LGA    P     127      P     127         14.588
LGA    R     128      R     128         10.321
LGA    R     129      R     129          6.600
LGA    V     130      V     130         10.836
LGA    Q     131      Q     131         11.932
LGA    A     132      A     132         12.479
LGA    W     133      W     133         17.954
LGA    R     134      R     134         24.396
LGA    E     135      E     135         25.067
LGA    A     136      A     136         24.872
LGA    N     137      N     137         28.824
LGA    E     138      E     138         25.640
LGA    L     139      L     139         23.167
LGA    S     140      S     140         25.214
LGA    G     141      G     141         24.486
LGA    R     142      R     142         22.779
LGA    E     143      E     143         19.557
LGA    L     144      L     144         19.949
LGA    M     145      M     145         15.742
LGA    R     146      R     146         17.063
LGA    D     147      D     147         17.065
LGA    G     148      G     148         12.686
LGA    E     149      E     149         13.539
LGA    W     150      W     150         15.634
LGA    L     151      L     151         15.703

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  144  144    4.0     22    2.67    16.319    13.113     0.794

LGA_LOCAL      RMSD =  2.671  Number of atoms =   22  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.912  Number of atoms =  144 
Std_ALL_ATOMS  RMSD = 12.415  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.340730 * X  +  -0.105490 * Y  +  -0.934224 * Z  +   8.328787
  Y_new =   0.936711 * X  +   0.046966 * Y  +  -0.346940 * Z  +  30.172119
  Z_new =   0.080475 * X  +  -0.993311 * Y  +   0.082811 * Z  +  17.338755 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.487620    1.653973  [ DEG:   -85.2343     94.7657 ]
  Theta =  -0.080562   -3.061030  [ DEG:    -4.6159   -175.3841 ]
  Phi   =   1.919669   -1.221924  [ DEG:   109.9889    -70.0111 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0370TS168_3-D1                               
REMARK     2: T0370_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0370TS168_3-D1.T0370_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  144  144   4.0   22   2.67  13.113    12.42
REMARK  ---------------------------------------------------------- 
MOLECULE T0370TS168_3-D1
PFRMAT TS
TARGET T0370
MODEL 3
PARENT N/A
ATOM      8  CA  THR     8      27.376  29.442  26.853  1.00 25.00           C
ATOM      9  CA  ALA     9      23.816  28.062  26.551  1.00 25.00           C
ATOM     10  CA  LYS    10      22.479  30.990  28.627  1.00 25.00           C
ATOM     11  CA  GLN    11      24.354  33.467  26.388  1.00 25.00           C
ATOM     12  CA  ARG    12      22.892  31.792  23.269  1.00 25.00           C
ATOM     13  CA  ILE    13      19.375  32.010  24.771  1.00 25.00           C
ATOM     14  CA  GLN    14      19.911  35.722  25.548  1.00 25.00           C
ATOM     15  CA  ASP    15      21.093  36.328  21.955  1.00 25.00           C
ATOM     16  CA  THR    16      17.998  34.520  20.606  1.00 25.00           C
ATOM     17  CA  LEU    17      15.742  36.655  22.846  1.00 25.00           C
ATOM     18  CA  ASN    18      17.472  39.836  21.597  1.00 25.00           C
ATOM     19  CA  ARG    19      16.978  38.710  17.971  1.00 25.00           C
ATOM     20  CA  LEU    20      13.272  38.034  18.658  1.00 25.00           C
ATOM     21  CA  GLU    21      12.904  41.508  20.226  1.00 25.00           C
ATOM     22  CA  LEU    22       9.734  41.081  22.276  1.00 25.00           C
ATOM     23  CA  ASP    23       9.268  41.122  26.088  1.00 25.00           C
ATOM     24  CA  VAL    24      10.800  37.631  26.285  1.00 25.00           C
ATOM     25  CA  ASP    25       9.404  35.438  23.474  1.00 25.00           C
ATOM     26  CA  ALA    26       6.823  33.951  25.882  1.00 25.00           C
ATOM     27  CA  TRP    27       5.800  37.469  26.997  1.00 25.00           C
ATOM     28  CA  VAL    28       5.417  38.542  23.340  1.00 25.00           C
ATOM     29  CA  SER    29       3.257  35.460  22.635  1.00 25.00           C
ATOM     30  CA  THR    30       1.072  36.264  25.676  1.00 25.00           C
ATOM     31  CA  ALA    31       0.273  39.352  23.609  1.00 25.00           C
ATOM     32  CA  GLY    32      -3.338  40.374  23.779  1.00 25.00           C
ATOM     33  CA  ALA    33      -4.699  37.010  24.785  1.00 25.00           C
ATOM     34  CA  ASP    34      -5.335  34.317  22.172  1.00 25.00           C
ATOM     35  CA  GLY    35      -3.445  31.417  23.752  1.00 25.00           C
ATOM     36  CA  GLY    36      -2.319  27.955  22.828  1.00 25.00           C
ATOM     37  CA  ALA    37       1.019  26.132  22.256  1.00 25.00           C
ATOM     38  CA  PRO    38       4.360  25.577  20.467  1.00 25.00           C
ATOM     39  CA  TYR    39       6.107  27.466  17.606  1.00 25.00           C
ATOM     40  CA  LEU    40       7.558  29.684  14.917  1.00 25.00           C
ATOM     41  CA  VAL    41      10.528  27.716  13.435  1.00 25.00           C
ATOM     42  CA  PRO    42      10.444  25.176  16.309  1.00 25.00           C
ATOM     43  CA  LEU    43      11.896  24.881  19.751  1.00 25.00           C
ATOM     44  CA  SER    44      14.509  27.255  21.281  1.00 25.00           C
ATOM     45  CA  TYR    45      16.605  25.469  18.659  1.00 25.00           C
ATOM     46  CA  LEU    46      15.312  23.966  15.412  1.00 25.00           C
ATOM     47  CA  TRP    47      16.111  22.444  12.083  1.00 25.00           C
ATOM     48  CA  ASP    48      18.468  23.175   9.213  1.00 25.00           C
ATOM     49  CA  GLY    49      20.059  25.664  11.654  1.00 25.00           C
ATOM     50  CA  GLU    50      18.271  28.519  13.457  1.00 25.00           C
ATOM     51  CA  THR    51      14.991  29.009  15.436  1.00 25.00           C
ATOM     52  CA  PHE    52      12.078  30.484  17.403  1.00 25.00           C
ATOM     53  CA  LEU    53       9.369  32.444  19.221  1.00 25.00           C
ATOM     54  CA  VAL    54       5.637  31.843  19.355  1.00 25.00           C
ATOM     55  CA  ALA    55       2.259  30.064  19.273  1.00 25.00           C
ATOM     56  CA  THR    56      -0.543  31.938  17.541  1.00 25.00           C
ATOM     57  CA  PRO    57      -2.671  30.602  14.663  1.00 25.00           C
ATOM     58  CA  ALA    58      -6.251  30.319  13.269  1.00 25.00           C
ATOM     59  CA  ALA    59      -8.236  27.041  13.053  1.00 25.00           C
ATOM     60  CA  SER    60     -11.907  27.658  13.882  1.00 25.00           C
ATOM     61  CA  PRO    61     -14.881  25.272  13.402  1.00 25.00           C
ATOM     62  CA  THR    62     -15.531  24.347  17.034  1.00 25.00           C
ATOM     63  CA  GLY    63     -13.289  21.316  17.593  1.00 25.00           C
ATOM     64  CA  ARG    64     -10.861  20.985  14.720  1.00 25.00           C
ATOM     65  CA  ASN    65      -8.256  21.003  12.005  1.00 25.00           C
ATOM     66  CA  LEU    66      -5.652  21.113  14.758  1.00 25.00           C
ATOM     67  CA  SER    67      -5.235  17.419  15.391  1.00 25.00           C
ATOM     68  CA  GLU    68      -2.430  17.714  12.779  1.00 25.00           C
ATOM     69  CA  THR    69      -0.593  20.169  15.088  1.00 25.00           C
ATOM     70  CA  GLY    70       0.606  22.085  18.148  1.00 25.00           C
ATOM     71  CA  ARG    71      -1.039  25.427  17.248  1.00 25.00           C
ATOM     72  CA  VAL    72       1.517  27.563  15.399  1.00 25.00           C
ATOM     73  CA  ARG    73       3.036  30.790  14.157  1.00 25.00           C
ATOM     74  CA  LEU    74       5.343  33.091  12.100  1.00 25.00           C
ATOM     75  CA  GLY    75       7.780  31.281   9.818  1.00 25.00           C
ATOM     76  CA  ILE    76       8.786  27.917   8.346  1.00 25.00           C
ATOM     77  CA  GLY    77      11.822  25.627   8.979  1.00 25.00           C
ATOM     78  CA  PRO    78      12.245  25.721   5.193  1.00 25.00           C
ATOM     79  CA  THR    79      14.086  28.865   4.160  1.00 25.00           C
ATOM     80  CA  ARG    80      12.770  31.695   6.309  1.00 25.00           C
ATOM     81  CA  ASP    81      12.784  30.645   9.953  1.00 25.00           C
ATOM     82  CA  LEU    82      13.194  32.963  12.912  1.00 25.00           C
ATOM     83  CA  VAL    83       9.876  34.015  14.470  1.00 25.00           C
ATOM     84  CA  LEU    84       7.144  35.946  16.222  1.00 25.00           C
ATOM     85  CA  VAL    85       3.359  35.301  16.538  1.00 25.00           C
ATOM     86  CA  GLU    86       1.375  38.054  14.850  1.00 25.00           C
ATOM     87  CA  GLY    87       3.750  37.740  11.846  1.00 25.00           C
ATOM     88  CA  THR    88       6.358  40.101  13.397  1.00 25.00           C
ATOM     89  CA  ALA    89       8.684  40.841  16.271  1.00 25.00           C
ATOM     90  CA  LEU    90      11.547  42.789  14.631  1.00 25.00           C
ATOM     91  CA  PRO    91      10.438  46.251  13.629  1.00 25.00           C
ATOM     92  CA  LEU    92      10.510  46.832   9.887  1.00 25.00           C
ATOM     93  CA  GLU    93      14.160  46.803   8.759  1.00 25.00           C
ATOM     94  CA  PRO    94      14.463  48.115   5.167  1.00 25.00           C
ATOM     95  CA  ALA    95      12.383  45.352   3.524  1.00 25.00           C
ATOM     96  CA  GLY    96      15.570  43.394   2.811  1.00 25.00           C
ATOM     97  CA  LEU    97      16.636  41.679   6.053  1.00 25.00           C
ATOM     98  CA  PRO    98      20.307  40.559   6.476  1.00 25.00           C
ATOM     99  CA  ASP    99      20.596  37.995   3.661  1.00 25.00           C
ATOM    100  CA  GLY   100      19.345  34.492   4.543  1.00 25.00           C
ATOM    101  CA  VAL   101      19.147  35.418   8.227  1.00 25.00           C
ATOM    102  CA  GLY   102      20.281  36.139  11.785  1.00 25.00           C
ATOM    103  CA  ASP   103      17.840  39.004  11.510  1.00 25.00           C
ATOM    104  CA  THR   104      14.119  38.469  11.412  1.00 25.00           C
ATOM    105  CA  PHE   105      11.439  36.345   9.638  1.00 25.00           C
ATOM    106  CA  ALA   106       7.845  36.712   8.590  1.00 25.00           C
ATOM    107  CA  GLU   107       6.063  39.147   6.280  1.00 25.00           C
ATOM    108  CA  LYS   108       3.933  42.086   5.092  1.00 25.00           C
ATOM    109  CA  THR   109       2.004  39.753   2.902  1.00 25.00           C
ATOM    110  CA  GLY   110       1.265  37.562  -0.087  1.00 25.00           C
ATOM    111  CA  PHE   111       2.995  35.895  -3.007  1.00 25.00           C
ATOM    112  CA  ASP   112       0.729  32.817  -2.698  1.00 25.00           C
ATOM    113  CA  PRO   113       3.370  30.630  -1.081  1.00 25.00           C
ATOM    114  CA  ARG   114       3.243  26.824  -0.668  1.00 25.00           C
ATOM    115  CA  ARG   115      -0.024  27.124   1.309  1.00 25.00           C
ATOM    116  CA  LEU   116      -2.481  29.993   0.865  1.00 25.00           C
ATOM    117  CA  THR   117      -2.025  33.591   1.817  1.00 25.00           C
ATOM    118  CA  THR   118      -1.234  35.241   5.097  1.00 25.00           C
ATOM    119  CA  SER   119       0.512  36.036   8.379  1.00 25.00           C
ATOM    120  CA  TYR   120      -0.239  34.269  11.659  1.00 25.00           C
ATOM    121  CA  LEU   121       0.609  30.999   9.887  1.00 25.00           C
ATOM    122  CA  TYR   122       3.003  28.117   9.801  1.00 25.00           C
ATOM    123  CA  PHE   123       5.558  26.220  11.868  1.00 25.00           C
ATOM    124  CA  ARG   124       5.275  23.601  14.663  1.00 25.00           C
ATOM    125  CA  ILE   125       6.548  20.567  12.666  1.00 25.00           C
ATOM    126  CA  SER   126       8.135  17.161  12.088  1.00 25.00           C
ATOM    127  CA  PRO   127       9.620  14.595  14.466  1.00 25.00           C
ATOM    128  CA  ARG   128      12.459  16.802  15.783  1.00 25.00           C
ATOM    129  CA  ARG   129      10.031  19.741  16.162  1.00 25.00           C
ATOM    130  CA  VAL   130       7.576  17.498  18.062  1.00 25.00           C
ATOM    131  CA  GLN   131      10.396  16.324  20.372  1.00 25.00           C
ATOM    132  CA  ALA   132      11.413  19.960  21.018  1.00 25.00           C
ATOM    133  CA  TRP   133       7.780  20.857  21.833  1.00 25.00           C
ATOM    134  CA  ARG   134       7.565  17.896  24.252  1.00 25.00           C
ATOM    135  CA  GLU   135      10.814  19.013  25.946  1.00 25.00           C
ATOM    136  CA  ALA   136       9.440  22.572  26.287  1.00 25.00           C
ATOM    137  CA  ASN   137       6.209  21.204  27.823  1.00 25.00           C
ATOM    138  CA  GLU   138       8.245  19.105  30.298  1.00 25.00           C
ATOM    139  CA  LEU   139      10.309  22.187  31.251  1.00 25.00           C
ATOM    140  CA  SER   140       7.097  24.201  31.795  1.00 25.00           C
ATOM    141  CA  GLY   141       5.688  21.406  34.001  1.00 25.00           C
ATOM    142  CA  ARG   142       8.930  21.349  36.040  1.00 25.00           C
ATOM    143  CA  GLU   143       8.753  25.149  36.474  1.00 25.00           C
ATOM    144  CA  LEU   144       5.114  24.872  37.634  1.00 25.00           C
ATOM    145  CA  MET   145       4.131  27.272  34.891  1.00 25.00           C
ATOM    146  CA  ARG   146       1.117  25.035  34.332  1.00 25.00           C
ATOM    147  CA  ASP   147      -1.107  28.050  33.678  1.00 25.00           C
ATOM    148  CA  GLY   148       1.167  30.319  31.666  1.00 25.00           C
ATOM    149  CA  GLU   149       1.386  29.476  27.974  1.00 25.00           C
ATOM    150  CA  TRP   150       1.747  30.653  24.327  1.00 25.00           C
ATOM    151  CA  LEU   151       5.327  29.447  23.902  1.00 25.00           C
TER
END
