
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  151 (  151),  selected  144 , name T0362TS393_5
# Molecule2: number of CA atoms  144 ( 1169),  selected  144 , name T0362.pdb
# PARAMETERS: T0362TS393_5.T0362.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   144         1 - 144         4.89     4.89
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        22 - 49          1.99     6.16
  LONGEST_CONTINUOUS_SEGMENT:    28        23 - 50          1.90     6.76
  LCS_AVERAGE:     13.01

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        24 - 44          0.99     6.75
  LCS_AVERAGE:      5.83

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     M       1     M       1      3    5  144     3    4    4   14   22   46   59   69   77   85   95  109  126  129  130  132  134  136  138  139 
LCS_GDT     N       2     N       2      3    5  144     3    4    6   14   21   32   44   57   65   76   82   91  106  119  129  131  134  136  137  139 
LCS_GDT     P       3     P       3      3    5  144     3    4    4   10   16   20   28   33   39   58   70   83   90  100  116  130  133  136  136  139 
LCS_GDT     E       4     E       4      0    5  144     0    1    9   17   30   47   66   80  100  114  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     N       5     N       5      3    5  144     3    6   13   21   39   57   80  100  106  114  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     W       6     W       6      3    7  144     3    6   10   19   30   57   77  100  106  114  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L       7     L       7      5    9  144     3    7   18   35   54   73   95  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L       8     L       8      7    9  144     4   12   32   51   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L       9     L       9      7    9  144     3   17   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R      10     R      10      7    9  144     3   14   33   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R      11     R      11      7    9  144     3   15   34   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     V      12     V      12      7    9  144     4   11   30   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     V      13     V      13      7    9  144     4    9   30   45   73   88   97  104  108  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R      14     R      14      7    9  144     4    7   16   29   55   77   85  101  106  112  117  122  126  129  130  132  134  136  138  139 
LCS_GDT     F      15     F      15      5    9  144     3    4    8   14   21   33   44   66   80   94  106  117  123  127  130  132  134  136  138  139 
LCS_GDT     G      16     G      16      4   10  144     3   12   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     D      17     D      17      5   11  144     3    5   30   50   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     T      18     T      18      5   11  144     3   12   29   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     D      19     D      19      5   11  144     3   11   30   47   70   86   97  104  108  114  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A      20     A      20      5   11  144     3    5   14   19   37   54   72   83  102  107  112  121  126  129  130  132  134  136  138  139 
LCS_GDT     A      21     A      21      5   25  144     1    5   10   19   37   54   71   91  102  108  114  122  126  129  130  132  134  136  138  139 
LCS_GDT     G      22     G      22      3   28  144     0    3    7   10   17   36   46   66   79   99  111  117  125  129  130  132  134  136  138  139 
LCS_GDT     V      23     V      23     18   28  144     2   11   30   51   72   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     M      24     M      24     21   28  144     3   10   32   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     H      25     H      25     21   28  144     3   12   31   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     F      26     F      26     21   28  144     3   10   30   51   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     H      27     H      27     21   28  144     3   15   31   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     Q      28     Q      28     21   28  144    13   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L      29     L      29     21   28  144    13   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     F      30     F      30     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R      31     R      31     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     W      32     W      32     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     C      33     C      33     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     H      34     H      34     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E      35     E      35     21   28  144    14   18   32   54   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     S      36     S      36     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     W      37     W      37     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E      38     E      38     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E      39     E      39     21   28  144    14   18   34   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     S      40     S      40     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L      41     L      41     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E      42     E      42     21   28  144    14   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     S      43     S      43     21   28  144    14   18   29   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     Y      44     Y      44     21   28  144     8   18   22   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     G      45     G      45     20   28  144     7   15   30   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L      46     L      46     20   28  144     3   11   18   41   73   88   97  104  108  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     N      47     N      47     20   28  144     3   11   19   42   73   88   97  104  108  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     P      48     P      48      4   28  144     3   11   31   51   72   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A      49     A      49      4   28  144     3    4   22   50   69   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     D      50     D      50      4   28  144     3    4    8   15   34   55   70   84  101  113  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     I      51     I      51      4    6  144     3    4    5    6   17   30   51   62   77   90  114  120  126  129  130  132  134  136  138  139 
LCS_GDT     F      52     F      52      4    6  144     3    4    5    6    7    9   28   40   46   64   80   93  106  115  122  129  134  136  138  139 
LCS_GDT     P      53     P      53      4    6  144     3    4    5    6    7   14   18   28   40   44   46   64   75   92  106  114  119  126  130  135 
LCS_GDT     G      54     G      54      4    6  144     3    4    5    6    7    9   11   13   16   21   28   33   37   55   70   79   87   99  118  125 
LCS_GDT     S      55     S      55      4    6  144     3    4    5    6    8    9   13   15   20   22   47   56   62   75  101  110  115  122  128  134 
LCS_GDT     R      56     R      56      4    6  144     3    4    4    6    7   24   33   45   55   66   79   85   99  107  115  123  126  132  136  137 
LCS_GDT     K      57     K      57      4    6  144     3    4    4    7   15   21   38   64   78   99  109  116  119  123  127  132  134  136  138  139 
LCS_GDT     S      58     S      58      4    6  144     3    4    4    9   10   27   34   60   81   98  109  116  119  123  128  132  134  136  138  139 
LCS_GDT     E      59     E      59      3    6  144     3    4    4    7   31   43   72   79   89   94  109  116  119  123  127  132  134  136  138  139 
LCS_GDT     V      60     V      60      3    6  144     3    4   22   45   70   82   97  104  107  113  119  122  125  129  130  132  134  136  138  139 
LCS_GDT     T      61     T      61      4    6  144     3    6   21   31   53   75   85   96  104  110  115  119  123  129  130  132  134  136  138  139 
LCS_GDT     P      62     P      62      4    6  144     3    4   29   51   70   84   97  104  108  114  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E      63     E      63      4    5  144     3    4   11   26   55   79   96  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     V      64     V      64      4   11  144     3    5   13   21   40   61   79   98  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A      65     A      65      4   11  144     3    4   13   21   25   43   67   84  101  113  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L      66     L      66      4   11  144     3    6    9   21   33   51   73   93  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     P      67     P      67      4   11  144     3    6   13   26   49   74   86   99  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     I      68     I      68      4   11  144     3   12   29   48   69   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     I      69     I      69      4   11  144     1    7   18   41   63   79   94  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     H      70     H      70      4   11  144     3   14   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     C      71     C      71      4   11  144     3   14   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     Q      72     Q      72      6   11  144     3   11   30   46   70   86   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A      73     A      73      7   11  144     3   12   31   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     D      74     D      74      7   11  144     3   14   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     F      75     F      75      7   11  144     3    9   31   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R      76     R      76      7   11  144     4   10   32   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R      77     R      77      7   11  144     4   11   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     P      78     P      78      7   11  144     4   14   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     I      79     I      79      7   19  144     4   16   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     H      80     H      80      4   20  144     7   18   19   29   48   76   89  101  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     T      81     T      81      4   20  144     4    8   11   18   29   56   75   93  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     G      82     G      82      4   20  144     4    8   13   31   58   75   96  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     D      83     D      83      8   20  144     4   11   30   52   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A      84     A      84      8   24  144     3   14   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L      85     L      85      8   24  144     4   16   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A      86     A      86      8   24  144     3   11   30   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     M      87     M      87      8   24  144     4   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E      88     E      88      8   24  144     4   14   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L      89     L      89      8   24  144     4   14   32   52   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R      90     R      90      8   24  144     3   10   19   39   61   81   95  103  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     P      91     P      91      6   24  144     3    9   30   51   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E      92     E      92      4   26  144     4   17   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R      93     R      93      4   26  144     3   10   28   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L      94     L      94      4   26  144     4   12   30   50   72   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     N      95     N      95      4   26  144     6   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     P      96     P      96      5   26  144     3    8   29   49   74   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     N      97     N      97      5   26  144     4   10   28   53   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     S      98     S      98      5   26  144     4   12   30   50   72   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     F      99     F      99      5   26  144     4   12   30   50   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     Q     100     Q     100      5   26  144     4    5    6   31   51   66   85  101  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     V     101     V     101      5   26  144     3   15   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     H     102     H     102      7   26  144     4   14   32   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     F     103     F     103      7   26  144     4    9   20   38   61   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E     104     E     104      7   26  144     4   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     F     105     F     105      7   26  144     4    9   20   42   63   86   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R     106     R     106      7   26  144     5   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     C     107     C     107      7   26  144     4   12   30   53   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E     108     E     108      7   26  144     4   13   32   53   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E     109     E     109      6   26  144     3    6   11   17   28   56   81  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     Q     110     Q     110      6   26  144     3    8   27   51   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     I     111     I     111      6   26  144     3    6   11   42   67   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A     112     A     112      6   26  144     3   15   33   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A     113     A     113      6   26  144     3   12   32   53   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     H     114     H     114      6   26  144     3   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A     115     A     115      6   26  144     3   12   32   54   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L     116     L     116      6   26  144     4   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     I     117     I     117      6   26  144     3    8   20   43   67   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R     118     R     118      6   23  144     3    5   15   37   67   88   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     H     119     H     119      6   23  144     3    5   15   28   55   78   94  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L     120     L     120      6   23  144     3    5   13   21   33   59   80   98  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A     121     A     121      6   17  144     3    5   13   21   33   51   72   92  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     I     122     I     122      6   17  144     3    5   11   17   30   50   75   93  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     N     123     N     123      6   13  144     3    3    6    9   16   21   31   52   78   98  111  121  123  126  129  132  133  135  138  139 
LCS_GDT     A     124     A     124      3   13  144     3    4   10   19   30   58   74   93  109  115  119  123  125  128  130  132  134  136  138  139 
LCS_GDT     Q     125     Q     125      3   15  144     3    5   10   17   25   38   58   80   96  112  118  123  125  126  129  132  133  136  138  139 
LCS_GDT     T     126     T     126      3   18  144     3    5   13   26   42   61   78   93  109  115  119  123  125  128  130  132  134  136  138  139 
LCS_GDT     R     127     R     127      7   18  144     4   14   30   50   69   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     H     128     H     128      7   18  144     4   12   30   50   69   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R     129     R     129      7   18  144     6   16   30   53   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     C     130     C     130      7   18  144     4   10   30   53   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A     131     A     131      7   18  144     6   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L     132     L     132      7   18  144     4   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     P     133     P     133      7   18  144     3   14   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E     134     E     134     10   18  144     4   18   36   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     G     135     G     135     10   18  144     7   11   30   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     I     136     I     136     10   18  144     8   11   30   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     D     137     D     137     10   18  144     8   11   30   56   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     R     138     R     138     10   18  144     8   11   24   42   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     W     139     W     139     10   18  144     8   11   18   51   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     L     140     L     140     10   18  144     8   11   30   49   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     E     141     E     141     10   18  144     8   11   18   37   75   89   97  104  109  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     A     142     A     142     10   18  144     8   11   14   25   41   67   86  101  108  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     S     143     S     143     10   18  144     8   11   12   19   31   62   77   93  107  115  119  123  126  129  130  132  134  136  138  139 
LCS_GDT     G     144     G     144     10   16  144     3    3    3   12   15   24   29   60   79   98  111  121  126  129  130  132  134  136  138  139 
LCS_AVERAGE  LCS_A:  39.61  (   5.83   13.01  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     18     36     56     75     89     97    104    109    115    119    123    126    129    130    132    134    136    138    139 
GDT PERCENT_CA   9.72  12.50  25.00  38.89  52.08  61.81  67.36  72.22  75.69  79.86  82.64  85.42  87.50  89.58  90.28  91.67  93.06  94.44  95.83  96.53
GDT RMS_LOCAL    0.34   0.45   1.16   1.45   1.72   1.98   2.11   2.31   2.74   2.82   2.95   3.13   3.36   3.48   3.48   3.60   3.77   3.90   4.06   4.15
GDT RMS_ALL_CA   6.68   6.81   5.11   5.18   5.14   5.06   5.06   5.03   5.12   5.11   5.05   5.09   4.99   4.97   5.00   5.02   4.95   4.95   4.94   4.94

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          8.742
LGA    N       2      N       2         10.535
LGA    P       3      P       3         11.021
LGA    E       4      E       4          5.458
LGA    N       5      N       5          5.372
LGA    W       6      W       6          5.341
LGA    L       7      L       7          3.351
LGA    L       8      L       8          3.955
LGA    L       9      L       9          2.714
LGA    R      10      R      10          3.304
LGA    R      11      R      11          3.135
LGA    V      12      V      12          3.180
LGA    V      13      V      13          3.276
LGA    R      14      R      14          5.131
LGA    F      15      F      15          8.421
LGA    G      16      G      16          1.924
LGA    D      17      D      17          2.165
LGA    T      18      T      18          2.235
LGA    D      19      D      19          3.392
LGA    A      20      A      20          7.681
LGA    A      21      A      21          7.313
LGA    G      22      G      22          8.282
LGA    V      23      V      23          2.873
LGA    M      24      M      24          1.915
LGA    H      25      H      25          2.158
LGA    F      26      F      26          2.655
LGA    H      27      H      27          1.998
LGA    Q      28      Q      28          0.680
LGA    L      29      L      29          0.485
LGA    F      30      F      30          1.039
LGA    R      31      R      31          0.847
LGA    W      32      W      32          0.349
LGA    C      33      C      33          0.703
LGA    H      34      H      34          1.054
LGA    E      35      E      35          0.749
LGA    S      36      S      36          0.900
LGA    W      37      W      37          1.191
LGA    E      38      E      38          0.637
LGA    E      39      E      39          0.792
LGA    S      40      S      40          1.794
LGA    L      41      L      41          1.912
LGA    E      42      E      42          0.993
LGA    S      43      S      43          2.547
LGA    Y      44      Y      44          3.597
LGA    G      45      G      45          3.626
LGA    L      46      L      46          3.829
LGA    N      47      N      47          3.511
LGA    P      48      P      48          1.266
LGA    A      49      A      49          2.447
LGA    D      50      D      50          7.560
LGA    I      51      I      51          8.576
LGA    F      52      F      52         11.328
LGA    P      53      P      53         14.786
LGA    G      54      G      54         18.372
LGA    S      55      S      55         15.321
LGA    R      56      R      56         12.851
LGA    K      57      K      57          9.362
LGA    S      58      S      58          8.433
LGA    E      59      E      59          8.543
LGA    V      60      V      60          3.658
LGA    T      61      T      61          5.852
LGA    P      62      P      62          3.091
LGA    E      63      E      63          3.814
LGA    V      64      V      64          5.775
LGA    A      65      A      65          7.070
LGA    L      66      L      66          6.434
LGA    P      67      P      67          5.219
LGA    I      68      I      68          2.899
LGA    I      69      I      69          3.886
LGA    H      70      H      70          1.151
LGA    C      71      C      71          1.310
LGA    Q      72      Q      72          3.218
LGA    A      73      A      73          1.998
LGA    D      74      D      74          1.738
LGA    F      75      F      75          2.361
LGA    R      76      R      76          1.934
LGA    R      77      R      77          1.722
LGA    P      78      P      78          1.281
LGA    I      79      I      79          1.025
LGA    H      80      H      80          4.580
LGA    T      81      T      81          5.706
LGA    G      82      G      82          3.695
LGA    D      83      D      83          2.838
LGA    A      84      A      84          1.575
LGA    L      85      L      85          1.756
LGA    A      86      A      86          2.918
LGA    M      87      M      87          2.123
LGA    E      88      E      88          2.532
LGA    L      89      L      89          3.272
LGA    R      90      R      90          4.644
LGA    P      91      P      91          2.638
LGA    E      92      E      92          1.036
LGA    R      93      R      93          1.925
LGA    L      94      L      94          3.169
LGA    N      95      N      95          1.334
LGA    P      96      P      96          3.601
LGA    N      97      N      97          2.569
LGA    S      98      S      98          2.903
LGA    F      99      F      99          2.581
LGA    Q     100      Q     100          4.994
LGA    V     101      V     101          1.580
LGA    H     102      H     102          2.132
LGA    F     103      F     103          2.578
LGA    E     104      E     104          2.000
LGA    F     105      F     105          3.439
LGA    R     106      R     106          1.647
LGA    C     107      C     107          1.917
LGA    E     108      E     108          0.936
LGA    E     109      E     109          3.947
LGA    Q     110      Q     110          1.405
LGA    I     111      I     111          2.118
LGA    A     112      A     112          2.010
LGA    A     113      A     113          2.755
LGA    H     114      H     114          1.568
LGA    A     115      A     115          2.227
LGA    L     116      L     116          1.239
LGA    I     117      I     117          2.812
LGA    R     118      R     118          2.677
LGA    H     119      H     119          3.699
LGA    L     120      L     120          5.407
LGA    A     121      A     121          6.064
LGA    I     122      I     122          6.140
LGA    N     123      N     123          9.277
LGA    A     124      A     124          7.333
LGA    Q     125      Q     125          8.528
LGA    T     126      T     126          7.427
LGA    R     127      R     127          3.268
LGA    H     128      H     128          3.254
LGA    R     129      R     129          2.503
LGA    C     130      C     130          2.312
LGA    A     131      A     131          1.945
LGA    L     132      L     132          1.402
LGA    P     133      P     133          2.756
LGA    E     134      E     134          2.266
LGA    G     135      G     135          2.673
LGA    I     136      I     136          1.582
LGA    D     137      D     137          2.060
LGA    R     138      R     138          3.456
LGA    W     139      W     139          2.893
LGA    L     140      L     140          2.340
LGA    E     141      E     141          3.211
LGA    A     142      A     142          4.938
LGA    S     143      S     143          5.146
LGA    G     144      G     144          7.451

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  151  144    4.0    104    2.31    53.819    48.214     4.307

LGA_LOCAL      RMSD =  2.315  Number of atoms =  104  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.943  Number of atoms =  144 
Std_ALL_ATOMS  RMSD =  4.891  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.051023 * X  +  -0.699590 * Y  +  -0.712721 * Z  +  40.110298
  Y_new =   0.663368 * X  +   0.509731 * Y  +  -0.547830 * Z  +  45.263775
  Z_new =   0.746552 * X  +  -0.500748 * Y  +   0.438077 * Z  +  12.266136 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.852054    2.289539  [ DEG:   -48.8191    131.1809 ]
  Theta =  -0.842864   -2.298729  [ DEG:   -48.2926   -131.7074 ]
  Phi   =   1.647561   -1.494032  [ DEG:    94.3983    -85.6017 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0362TS393_5                                  
REMARK     2: T0362.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0362TS393_5.T0362.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  151  144   4.0  104   2.31  48.214     4.89
REMARK  ---------------------------------------------------------- 
MOLECULE T0362TS393_5
PFRMAT TS
TARGET T0362
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      42.035  48.797  35.035  1.00 25.00           C
ATOM      2  CA  ASN     2      42.850  52.462  34.621  1.00 25.00           C
ATOM      3  CA  PRO     3      39.851  53.341  32.358  1.00 25.00           C
ATOM      4  CA  GLU     4      37.717  52.756  29.215  1.00 25.00           C
ATOM      5  CA  ASN     5      36.452  49.739  27.218  1.00 25.00           C
ATOM      6  CA  TRP     6      36.273  48.113  23.808  1.00 25.00           C
ATOM      7  CA  LEU     7      39.110  50.482  22.883  1.00 25.00           C
ATOM      8  CA  LEU     8      42.270  48.838  21.477  1.00 25.00           C
ATOM      9  CA  LEU     9      44.614  50.277  18.856  1.00 25.00           C
ATOM     10  CA  ARG    10      46.990  52.835  17.257  1.00 25.00           C
ATOM     11  CA  ARG    11      49.761  54.249  15.043  1.00 25.00           C
ATOM     12  CA  VAL    12      49.799  57.096  12.525  1.00 25.00           C
ATOM     13  CA  VAL    13      48.115  58.063   9.308  1.00 25.00           C
ATOM     14  CA  ARG    14      50.633  56.716   6.850  1.00 25.00           C
ATOM     15  CA  PHE    15      51.132  55.790   3.194  1.00 25.00           C
ATOM     16  CA  GLY    16      54.190  58.032   3.505  1.00 25.00           C
ATOM     17  CA  ASP    17      51.997  60.991   4.240  1.00 25.00           C
ATOM     18  CA  THR    18      49.934  62.151   1.208  1.00 25.00           C
ATOM     19  CA  ASP    19      49.058  61.825  -2.507  1.00 25.00           C
ATOM     20  CA  ALA    20      46.231  62.401  -5.052  1.00 25.00           C
ATOM     21  CA  ALA    21      42.941  63.895  -3.958  1.00 25.00           C
ATOM     22  CA  GLY    22      42.559  64.402  -0.151  1.00 25.00           C
ATOM     23  CA  VAL    23      44.925  64.233   2.864  1.00 25.00           C
ATOM     24  CA  MET    24      45.229  60.793   4.320  1.00 25.00           C
ATOM     25  CA  HIS    25      44.225  59.564   0.815  1.00 25.00           C
ATOM     26  CA  PHE    26      42.003  56.488   0.560  1.00 25.00           C
ATOM     27  CA  HIS    27      45.156  54.317   0.657  1.00 25.00           C
ATOM     28  CA  GLN    28      46.071  55.754   4.086  1.00 25.00           C
ATOM     29  CA  LEU    29      42.537  55.017   5.366  1.00 25.00           C
ATOM     30  CA  PHE    30      42.786  51.426   4.058  1.00 25.00           C
ATOM     31  CA  ARG    31      46.170  51.001   5.800  1.00 25.00           C
ATOM     32  CA  TRP    32      44.683  52.331   9.069  1.00 25.00           C
ATOM     33  CA  CYS    33      41.752  49.884   8.759  1.00 25.00           C
ATOM     34  CA  HIS    34      44.195  46.995   8.164  1.00 25.00           C
ATOM     35  CA  GLU    35      46.214  48.036  11.248  1.00 25.00           C
ATOM     36  CA  SER    36      43.007  48.153  13.338  1.00 25.00           C
ATOM     37  CA  TRP    37      42.038  44.664  12.095  1.00 25.00           C
ATOM     38  CA  GLU    38      45.518  43.348  13.003  1.00 25.00           C
ATOM     39  CA  GLU    39      45.216  44.885  16.497  1.00 25.00           C
ATOM     40  CA  SER    40      41.777  43.258  16.942  1.00 25.00           C
ATOM     41  CA  LEU    41      43.212  39.876  15.861  1.00 25.00           C
ATOM     42  CA  GLU    42      46.089  40.269  18.358  1.00 25.00           C
ATOM     43  CA  SER    43      43.592  41.105  21.140  1.00 25.00           C
ATOM     44  CA  TYR    44      41.519  38.012  20.242  1.00 25.00           C
ATOM     45  CA  GLY    45      44.353  35.479  20.067  1.00 25.00           C
ATOM     46  CA  LEU    46      42.977  33.195  17.434  1.00 25.00           C
ATOM     47  CA  ASN    47      45.922  33.793  15.131  1.00 25.00           C
ATOM     48  CA  PRO    48      48.259  36.828  15.166  1.00 25.00           C
ATOM     49  CA  ALA    49      51.061  34.810  13.510  1.00 25.00           C
ATOM     50  CA  ASP    50      52.692  34.225  16.926  1.00 25.00           C
ATOM     51  CA  ILE    51      50.686  30.985  17.203  1.00 25.00           C
ATOM     52  CA  PHE    52      47.674  31.352  19.593  1.00 25.00           C
ATOM     53  CA  PRO    53      47.338  27.556  19.722  1.00 25.00           C
ATOM     54  CA  GLY    54      44.699  24.839  19.351  1.00 25.00           C
ATOM     55  CA  SER    55      43.135  24.799  15.907  1.00 25.00           C
ATOM     56  CA  ARG    56      46.317  26.201  14.329  1.00 25.00           C
ATOM     57  CA  LYS    57      48.977  23.967  15.842  1.00 25.00           C
ATOM     58  CA  SER    58      48.074  21.794  12.832  1.00 25.00           C
ATOM     59  CA  GLU    59      44.820  22.239  10.820  1.00 25.00           C
ATOM     60  CA  VAL    60      47.036  24.530   8.680  1.00 25.00           C
ATOM     61  CA  THR    61      44.142  25.308   6.322  1.00 25.00           C
ATOM     62  CA  PRO    62      42.920  28.408   8.235  1.00 25.00           C
ATOM     63  CA  GLU    63      44.679  30.286   5.434  1.00 25.00           C
ATOM     64  CA  VAL    64      45.067  33.030   8.051  1.00 25.00           C
ATOM     65  CA  ALA    65      45.783  36.736   8.108  1.00 25.00           C
ATOM     66  CA  LEU    66      44.245  39.823   6.603  1.00 25.00           C
ATOM     67  CA  PRO    67      43.336  40.830   3.065  1.00 25.00           C
ATOM     68  CA  ILE    68      40.204  42.727   2.165  1.00 25.00           C
ATOM     69  CA  ILE    69      37.283  44.283   0.210  1.00 25.00           C
ATOM     70  CA  HIS    70      33.730  45.177   1.356  1.00 25.00           C
ATOM     71  CA  CYS    71      33.919  48.697   2.786  1.00 25.00           C
ATOM     72  CA  GLN    72      30.909  51.066   2.868  1.00 25.00           C
ATOM     73  CA  ALA    73      33.264  53.894   3.856  1.00 25.00           C
ATOM     74  CA  ASP    74      34.520  57.449   4.069  1.00 25.00           C
ATOM     75  CA  PHE    75      37.305  59.780   5.359  1.00 25.00           C
ATOM     76  CA  ARG    76      34.928  62.662   6.043  1.00 25.00           C
ATOM     77  CA  ARG    77      37.592  64.908   7.579  1.00 25.00           C
ATOM     78  CA  PRO    78      40.965  65.933   6.019  1.00 25.00           C
ATOM     79  CA  ILE    79      43.056  63.896   8.469  1.00 25.00           C
ATOM     80  CA  HIS    80      43.185  66.225  11.452  1.00 25.00           C
ATOM     81  CA  THR    81      46.091  68.421  10.406  1.00 25.00           C
ATOM     82  CA  GLY    82      48.873  65.866  10.736  1.00 25.00           C
ATOM     83  CA  ASP    83      47.663  62.517  12.010  1.00 25.00           C
ATOM     84  CA  ALA    84      47.519  61.898  15.771  1.00 25.00           C
ATOM     85  CA  LEU    85      44.968  59.215  15.023  1.00 25.00           C
ATOM     86  CA  ALA    86      43.073  56.315  16.707  1.00 25.00           C
ATOM     87  CA  MET    87      41.109  53.091  16.360  1.00 25.00           C
ATOM     88  CA  GLU    88      38.113  50.914  17.383  1.00 25.00           C
ATOM     89  CA  LEU    89      38.417  47.476  15.688  1.00 25.00           C
ATOM     90  CA  ARG    90      35.929  45.165  17.328  1.00 25.00           C
ATOM     91  CA  PRO    91      33.320  42.574  16.249  1.00 25.00           C
ATOM     92  CA  GLU    92      30.102  42.500  14.285  1.00 25.00           C
ATOM     93  CA  ARG    93      28.638  40.447  11.459  1.00 25.00           C
ATOM     94  CA  LEU    94      29.026  36.979   9.904  1.00 25.00           C
ATOM     95  CA  ASN    95      26.420  34.468   8.632  1.00 25.00           C
ATOM     96  CA  PRO    96      28.632  31.894   6.859  1.00 25.00           C
ATOM     97  CA  ASN    97      31.237  34.273   5.423  1.00 25.00           C
ATOM     98  CA  SER    98      33.808  36.627   6.986  1.00 25.00           C
ATOM     99  CA  PHE    99      34.023  39.962   8.919  1.00 25.00           C
ATOM    100  CA  GLN   100      36.462  41.943  11.091  1.00 25.00           C
ATOM    101  CA  VAL   101      35.126  45.407  12.004  1.00 25.00           C
ATOM    102  CA  HIS   102      34.936  49.195  12.288  1.00 25.00           C
ATOM    103  CA  PHE   103      34.321  52.486  14.092  1.00 25.00           C
ATOM    104  CA  GLU   104      37.219  54.873  13.700  1.00 25.00           C
ATOM    105  CA  PHE   105      37.998  57.034  16.676  1.00 25.00           C
ATOM    106  CA  ARG   106      39.608  60.532  16.579  1.00 25.00           C
ATOM    107  CA  CYS   107      40.608  63.845  18.052  1.00 25.00           C
ATOM    108  CA  GLU   108      40.317  67.472  19.146  1.00 25.00           C
ATOM    109  CA  GLU   109      36.701  68.688  19.320  1.00 25.00           C
ATOM    110  CA  GLN   110      35.591  66.716  16.347  1.00 25.00           C
ATOM    111  CA  ILE   111      34.142  64.623  13.553  1.00 25.00           C
ATOM    112  CA  ALA   112      36.864  62.196  12.555  1.00 25.00           C
ATOM    113  CA  ALA   113      38.401  59.278  10.599  1.00 25.00           C
ATOM    114  CA  HIS   114      36.254  56.550   9.073  1.00 25.00           C
ATOM    115  CA  ALA   115      37.049  53.009   7.936  1.00 25.00           C
ATOM    116  CA  LEU   116      34.384  50.415   7.463  1.00 25.00           C
ATOM    117  CA  ILE   117      37.051  47.775   7.631  1.00 25.00           C
ATOM    118  CA  ARG   118      34.257  45.423   6.577  1.00 25.00           C
ATOM    119  CA  HIS   119      37.022  42.873   6.030  1.00 25.00           C
ATOM    120  CA  LEU   120      38.280  39.344   5.311  1.00 25.00           C
ATOM    121  CA  ALA   121      40.063  36.673   7.241  1.00 25.00           C
ATOM    122  CA  ILE   122      40.767  35.130   3.846  1.00 25.00           C
ATOM    123  CA  ASN   123      44.441  34.968   2.741  1.00 25.00           C
ATOM    124  CA  ALA   124      47.211  33.971   0.264  1.00 25.00           C
ATOM    125  CA  GLN   125      47.205  32.806  -3.355  1.00 25.00           C
ATOM    126  CA  THR   126      44.177  30.584  -3.931  1.00 25.00           C
ATOM    127  CA  ARG   127      40.932  29.175  -2.616  1.00 25.00           C
ATOM    128  CA  HIS   128      37.497  27.984  -1.526  1.00 25.00           C
ATOM    129  CA  ARG   129      34.436  29.300   0.306  1.00 25.00           C
ATOM    130  CA  CYS   130      34.409  29.651   4.081  1.00 25.00           C
ATOM    131  CA  ALA   131      32.753  28.273   7.204  1.00 25.00           C
ATOM    132  CA  LEU   132      34.004  30.857   9.766  1.00 25.00           C
ATOM    133  CA  PRO   133      37.210  28.922  10.427  1.00 25.00           C
ATOM    134  CA  GLU   134      36.361  29.371  14.119  1.00 25.00           C
ATOM    135  CA  GLY   135      38.326  32.509  14.908  1.00 25.00           C
ATOM    136  CA  ILE   136      36.137  35.608  14.383  1.00 25.00           C
ATOM    137  CA  ASP   137      32.674  34.161  15.149  1.00 25.00           C
ATOM    138  CA  ARG   138      34.130  32.167  18.077  1.00 25.00           C
ATOM    139  CA  TRP   139      35.827  35.327  19.419  1.00 25.00           C
ATOM    140  CA  LEU   140      32.523  37.244  19.151  1.00 25.00           C
ATOM    141  CA  GLU   141      30.713  34.438  21.027  1.00 25.00           C
ATOM    142  CA  ALA   142      33.386  34.516  23.769  1.00 25.00           C
ATOM    143  CA  SER   143      33.007  38.315  24.066  1.00 25.00           C
ATOM    144  CA  GLY   144      30.559  37.735  26.919  1.00 25.00           C
ATOM    145  CA  VAL   145      27.604  35.577  27.922  1.00 25.00           C
ATOM    146  CA  GLY   146      25.070  33.172  29.260  1.00 25.00           C
ATOM    147  CA  LYS   147      27.542  31.722  31.739  1.00 25.00           C
ATOM    148  CA  ILE   148      30.755  33.096  33.145  1.00 25.00           C
ATOM    149  CA  GLY   149      29.010  34.369  36.351  1.00 25.00           C
ATOM    150  CA  SER   150      29.398  37.619  38.226  1.00 25.00           C
ATOM    151  CA  ILE   151      27.126  40.698  38.352  1.00 25.00           C
TER
END
