
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  151 (  151),  selected  144 , name T0362TS168_3
# Molecule2: number of CA atoms  144 ( 1169),  selected  144 , name T0362.pdb
# PARAMETERS: T0362TS168_3.T0362.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   144         1 - 144         4.97     4.97
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        18 - 44          1.99     5.71
  LONGEST_CONTINUOUS_SEGMENT:    27        21 - 47          1.99     5.66
  LONGEST_CONTINUOUS_SEGMENT:    27        22 - 48          1.89     5.66
  LONGEST_CONTINUOUS_SEGMENT:    27        23 - 49          1.74     5.77
  LCS_AVERAGE:     13.46

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        24 - 44          1.00     5.58
  LONGEST_CONTINUOUS_SEGMENT:    21        27 - 47          0.95     5.67
  LCS_AVERAGE:      5.71

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     M       1     M       1      3    5  144     3    3   10   11   16   20   29   48   67   75   92  105  115  122  130  132  135  137  138  139 
LCS_GDT     N       2     N       2      3    5  144     3    3   10   17   31   40   57   77   93  107  109  118  125  128  132  133  135  137  138  139 
LCS_GDT     P       3     P       3      3    5  144     3    4    6    8   17   28   35   48   66   74   86  102  110  120  128  131  135  137  138  139 
LCS_GDT     E       4     E       4      3    5  144     3    3    4    4   12   13   37   63   83  102  111  123  126  128  132  133  135  137  138  139 
LCS_GDT     N       5     N       5      3   11  144     3    7   17   38   57   76   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     W       6     W       6      3   11  144     4    8   17   35   57   74   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L       7     L       7      3   11  144     3    7   17   27   49   73   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L       8     L       8      7   11  144     3   13   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L       9     L       9      7   11  144     3   13   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R      10     R      10      7   11  144     7   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R      11     R      11      7   11  144     4   17   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     V      12     V      12      7   11  144     3   13   26   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     V      13     V      13      7   11  144     3    7   14   35   63   75   85  100  108  112  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R      14     R      14      7   11  144     3    8   16   35   63   75   85  100  107  112  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     F      15     F      15      6   11  144     3    4    9   17   26   35   50   77   91  102  110  117  121  128  132  133  135  137  138  139 
LCS_GDT     G      16     G      16      5    9  144     3   19   34   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     D      17     D      17      5    9  144     3    4   16   38   61   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     T      18     T      18      5   27  144     3    4   34   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     D      19     D      19      5   27  144     3   18   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A      20     A      20      5   27  144     3    7   11   22   39   57   76   88   98  106  112  120  124  128  132  133  135  137  138  139 
LCS_GDT     A      21     A      21      4   27  144     3    7   13   27   51   71   81   94  103  109  116  121  125  128  132  133  135  137  138  139 
LCS_GDT     G      22     G      22      3   27  144     3    3    4    8   17   44   55   75   92  106  112  119  124  128  132  133  135  137  138  139 
LCS_GDT     V      23     V      23      5   27  144     3    8   25   47   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     M      24     M      24     21   27  144     3   10   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     H      25     H      25     21   27  144     4   13   33   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     F      26     F      26     21   27  144     4   11   27   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     H      27     H      27     21   27  144     4   17   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     Q      28     Q      28     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L      29     L      29     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     F      30     F      30     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R      31     R      31     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     W      32     W      32     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     C      33     C      33     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     H      34     H      34     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E      35     E      35     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     S      36     S      36     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     W      37     W      37     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E      38     E      38     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E      39     E      39     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     S      40     S      40     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L      41     L      41     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E      42     E      42     21   27  144    15   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     S      43     S      43     21   27  144    11   19   30   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     Y      44     Y      44     21   27  144     8   19   26   46   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     G      45     G      45     21   27  144     3   14   25   43   55   75   89  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L      46     L      46     21   27  144     3    8   25   43   55   75   89  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     N      47     N      47     21   27  144     3    8   17   43   63   75   89  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     P      48     P      48      3   27  144     3   10   29   46   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A      49     A      49      3   27  144     3    6   17   33   55   76   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     D      50     D      50      4    7  144     3    6   13   27   40   55   70   83   97  110  116  121  126  128  132  133  135  137  138  139 
LCS_GDT     I      51     I      51      4    7  144     3    4    5   10   13   14   19   22   35   60   74   97  108  116  124  131  132  137  138  139 
LCS_GDT     F      52     F      52      4    7  144     3    4    5    7   10   11   12   17   36   41   54   65   76   88  110  116  123  129  137  139 
LCS_GDT     P      53     P      53      4    7  144     3    4    5    6    7   10   12   31   36   41   47   63   74   88  101  116  122  126  134  139 
LCS_GDT     G      54     G      54      4    7  144     3    4    5    7   10   11   16   17   18   21   22   25   29   33   54   61   68   87  103  108 
LCS_GDT     S      55     S      55      4    7  144     3    3    4    7   10   11   12   15   28   32   41   46   54   58   61   89   94  105  116  132 
LCS_GDT     R      56     R      56      3    7  144     3    4    5    7   10   15   17   23   28   32   41   46   56   66   86   92  108  114  130  133 
LCS_GDT     K      57     K      57      3    4  144     3    3    5    9   15   23   33   39   65   76   84   98  111  120  125  132  134  136  137  139 
LCS_GDT     S      58     S      58      3    4  144     3    3    9   34   53   73   85  100  108  112  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E      59     E      59      4    4  144     3    3    4   35   48   69   80   98  106  110  115  123  126  128  132  133  135  137  138  139 
LCS_GDT     V      60     V      60      4    5  144     3    8   14   27   48   66   79   94  104  109  114  121  125  128  132  133  135  137  138  139 
LCS_GDT     T      61     T      61      4    6  144     3    7   10   14   29   55   72   79   96  101  108  115  119  127  131  133  135  137  138  139 
LCS_GDT     P      62     P      62      4    6  144     3    4   20   40   60   75   89  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E      63     E      63      4   11  144     3    7   12   26   51   71   91   99  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     V      64     V      64      4   11  144     3    4    8   16   34   58   76   98  106  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A      65     A      65      4   11  144     3    3    9   24   35   58   77   96  106  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L      66     L      66      4   11  144     3    4    6   21   33   54   77   97  106  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     P      67     P      67      6   24  144     3    7   17   36   57   78   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     I      68     I      68      6   24  144     3   19   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     I      69     I      69      6   24  144     3    7   17   38   55   78   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     H      70     H      70      6   24  144     3   12   34   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     C      71     C      71      6   24  144     3   14   34   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     Q      72     Q      72      6   24  144     3   10   27   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A      73     A      73      8   24  144     3   18   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     D      74     D      74      8   24  144     3   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     F      75     F      75      8   24  144     3   13   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R      76     R      76      8   24  144     3    9   27   47   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R      77     R      77      8   24  144     3   19   27   44   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     P      78     P      78      8   24  144     5   13   25   44   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     I      79     I      79      8   24  144     3   19   28   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     H      80     H      80      8   24  144     5   11   24   44   61   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     T      81     T      81      5   24  144     3    4   10   21   42   64   87   98  106  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     G      82     G      82      7   24  144     3   13   27   44   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     D      83     D      83      8   24  144     7   20   30   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A      84     A      84      8   24  144     5   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L      85     L      85      8   24  144     5    8   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A      86     A      86      8   24  144     5    8   20   51   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     M      87     M      87      8   24  144     5   11   34   51   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E      88     E      88      8   24  144     5   13   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L      89     L      89      8   24  144     5    8   24   43   64   77   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R      90     R      90      8   24  144     5    8   24   40   61   75   88   98  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     P      91     P      91      3   22  144     3   10   29   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E      92     E      92      3   13  144     3    4   14   34   54   73   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R      93     R      93      3   13  144     3    4   13   27   42   61   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L      94     L      94      3   25  144     4    9   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     N      95     N      95      3   26  144     3   19   30   51   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     P      96     P      96      5   26  144     3    8   14   22   32   45   59   78   99  106  114  123  126  128  132  133  135  137  138  139 
LCS_GDT     N      97     N      97      5   26  144     3    7   23   43   60   78   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     S      98     S      98      5   26  144     4   10   30   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     F      99     F      99      7   26  144     3   12   29   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     Q     100     Q     100      7   26  144     3    9   19   43   64   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     V     101     V     101      7   26  144     3   16   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     H     102     H     102      7   26  144     3    6   20   43   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     F     103     F     103      7   26  144     4    7   20   40   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E     104     E     104      7   26  144     6   19   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     F     105     F     105      7   26  144     5    8   17   28   52   74   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R     106     R     106      7   26  144     3   19   34   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     C     107     C     107      7   26  144     5    9   23   43   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E     108     E     108      7   26  144     5    9   26   45   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E     109     E     109      7   26  144     5    8   14   27   56   76   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     Q     110     Q     110      7   26  144     5    9   29   50   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     I     111     I     111      7   26  144     4    8   27   47   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A     112     A     112      7   26  144     4   14   28   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A     113     A     113      7   26  144     4    9   26   49   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     H     114     H     114      7   26  144     4   19   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A     115     A     115      7   26  144     4    8   17   30   49   75   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L     116     L     116      7   26  144     4    9   22   43   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     I     117     I     117      7   26  144     4    9   17   29   52   76   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R     118     R     118      7   26  144     4    8   17   36   58   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     H     119     H     119      5   26  144     0    4   13   25   39   59   81   98  106  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L     120     L     120      5   26  144     1    5   11   24   39   62   86   98  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A     121     A     121      5   26  144     3    4    8   16   33   52   73   95  106  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     I     122     I     122      5   26  144     3    4   11   17   30   49   73   98  106  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     N     123     N     123      5   26  144     3    4    9   15   24   45   62   83  105  111  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A     124     A     124      4   19  144     4    7   26   45   64   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     Q     125     Q     125      4   10  144     4    5   11   18   30   46   65   94  106  112  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     T     126     T     126      4    8  144     4    6    7   16   27   40   64   83  105  111  118  121  126  128  132  133  135  137  138  139 
LCS_GDT     R     127     R     127      4   11  144     4   19   27   37   57   72   91   99  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     H     128     H     128      4   11  144     3    4   19   36   56   72   89   99  106  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R     129     R     129      4   11  144     3   13   27   40   61   78   91   99  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     C     130     C     130      4   12  144     3    5   21   43   61   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A     131     A     131      3   12  144     3    7   21   43   62   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L     132     L     132      3   12  144     5   20   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     P     133     P     133      3   12  144     3    3   16   40   63   75   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E     134     E     134      3   12  144     4   19   35   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     G     135     G     135      9   12  144     3   16   28   51   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     I     136     I     136      9   12  144     8    9   29   52   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     D     137     D     137      9   12  144     8    9   16   35   58   75   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     R     138     R     138      9   12  144     8    9    9   13   51   70   82   98  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     W     139     W     139      9   12  144     8    9   10   22   34   61   87  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     L     140     L     140      9   12  144     8    9   16   46   65   79   91  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     E     141     E     141      9   12  144     8    9   12   23   35   70   87  100  108  114  118  123  126  128  132  133  135  137  138  139 
LCS_GDT     A     142     A     142      9   10  144     8    9    9   15   27   34   46   55   81   98  116  121  126  128  132  133  135  137  138  139 
LCS_GDT     S     143     S     143      9   10  144     8    9    9   12   27   34   45   54   71   98  116  121  126  128  132  133  135  137  138  139 
LCS_GDT     G     144     G     144      3   10  144     3    3    3    5   12   13   13   15   35   51   57   99  115  124  130  133  135  137  138  139 
LCS_AVERAGE  LCS_A:  39.72  (   5.71   13.46  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     20     35     52     65     79     91    100    108    114    118    123    126    128    132    133    135    137    138    139 
GDT PERCENT_CA  10.42  13.89  24.31  36.11  45.14  54.86  63.19  69.44  75.00  79.17  81.94  85.42  87.50  88.89  91.67  92.36  93.75  95.14  95.83  96.53
GDT RMS_LOCAL    0.31   0.63   1.08   1.40   1.62   1.95   2.26   2.43   2.67   2.92   3.00   3.22   3.35   3.42   3.62   3.67   3.80   3.94   4.04   4.14
GDT RMS_ALL_CA   5.52   5.37   5.28   5.27   5.24   5.26   5.22   5.17   5.11   5.16   5.13   5.16   5.17   5.15   5.12   5.11   5.09   5.08   5.06   5.04

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         10.353
LGA    N       2      N       2          7.954
LGA    P       3      P       3          9.937
LGA    E       4      E       4          6.329
LGA    N       5      N       5          3.642
LGA    W       6      W       6          3.922
LGA    L       7      L       7          4.243
LGA    L       8      L       8          2.153
LGA    L       9      L       9          2.029
LGA    R      10      R      10          0.951
LGA    R      11      R      11          1.586
LGA    V      12      V      12          2.373
LGA    V      13      V      13          3.616
LGA    R      14      R      14          3.603
LGA    F      15      F      15          7.218
LGA    G      16      G      16          1.098
LGA    D      17      D      17          3.449
LGA    T      18      T      18          2.021
LGA    D      19      D      19          2.136
LGA    A      20      A      20          6.892
LGA    A      21      A      21          5.452
LGA    G      22      G      22          7.225
LGA    V      23      V      23          2.694
LGA    M      24      M      24          2.145
LGA    H      25      H      25          1.810
LGA    F      26      F      26          2.375
LGA    H      27      H      27          1.859
LGA    Q      28      Q      28          0.783
LGA    L      29      L      29          0.768
LGA    F      30      F      30          0.889
LGA    R      31      R      31          0.778
LGA    W      32      W      32          0.696
LGA    C      33      C      33          0.708
LGA    H      34      H      34          0.932
LGA    E      35      E      35          0.739
LGA    S      36      S      36          0.452
LGA    W      37      W      37          0.785
LGA    E      38      E      38          0.805
LGA    E      39      E      39          0.322
LGA    S      40      S      40          0.777
LGA    L      41      L      41          1.381
LGA    E      42      E      42          1.006
LGA    S      43      S      43          1.468
LGA    Y      44      Y      44          2.352
LGA    G      45      G      45          3.407
LGA    L      46      L      46          3.485
LGA    N      47      N      47          3.088
LGA    P      48      P      48          2.200
LGA    A      49      A      49          5.192
LGA    D      50      D      50          8.004
LGA    I      51      I      51         12.050
LGA    F      52      F      52         14.330
LGA    P      53      P      53         15.326
LGA    G      54      G      54         20.287
LGA    S      55      S      55         16.547
LGA    R      56      R      56         15.254
LGA    K      57      K      57         10.758
LGA    S      58      S      58          4.892
LGA    E      59      E      59          4.812
LGA    V      60      V      60          6.438
LGA    T      61      T      61          8.437
LGA    P      62      P      62          3.862
LGA    E      63      E      63          4.913
LGA    V      64      V      64          6.628
LGA    A      65      A      65          7.108
LGA    L      66      L      66          6.506
LGA    P      67      P      67          3.887
LGA    I      68      I      68          0.840
LGA    I      69      I      69          3.702
LGA    H      70      H      70          1.399
LGA    C      71      C      71          1.384
LGA    Q      72      Q      72          2.324
LGA    A      73      A      73          1.385
LGA    D      74      D      74          1.469
LGA    F      75      F      75          1.795
LGA    R      76      R      76          2.595
LGA    R      77      R      77          2.948
LGA    P      78      P      78          2.593
LGA    I      79      I      79          1.972
LGA    H      80      H      80          3.199
LGA    T      81      T      81          6.020
LGA    G      82      G      82          3.179
LGA    D      83      D      83          1.428
LGA    A      84      A      84          1.164
LGA    L      85      L      85          2.369
LGA    A      86      A      86          2.465
LGA    M      87      M      87          2.353
LGA    E      88      E      88          2.208
LGA    L      89      L      89          3.288
LGA    R      90      R      90          4.131
LGA    P      91      P      91          1.841
LGA    E      92      E      92          3.657
LGA    R      93      R      93          4.345
LGA    L      94      L      94          1.874
LGA    N      95      N      95          1.642
LGA    P      96      P      96          6.847
LGA    N      97      N      97          2.918
LGA    S      98      S      98          1.881
LGA    F      99      F      99          2.378
LGA    Q     100      Q     100          3.467
LGA    V     101      V     101          1.102
LGA    H     102      H     102          2.925
LGA    F     103      F     103          2.697
LGA    E     104      E     104          1.459
LGA    F     105      F     105          3.503
LGA    R     106      R     106          1.512
LGA    C     107      C     107          2.449
LGA    E     108      E     108          2.519
LGA    E     109      E     109          3.799
LGA    Q     110      Q     110          1.843
LGA    I     111      I     111          2.005
LGA    A     112      A     112          1.741
LGA    A     113      A     113          2.139
LGA    H     114      H     114          1.819
LGA    A     115      A     115          3.572
LGA    L     116      L     116          2.529
LGA    I     117      I     117          3.757
LGA    R     118      R     118          3.564
LGA    H     119      H     119          5.548
LGA    L     120      L     120          5.146
LGA    A     121      A     121          6.565
LGA    I     122      I     122          6.217
LGA    N     123      N     123          7.509
LGA    A     124      A     124          2.954
LGA    Q     125      Q     125          7.623
LGA    T     126      T     126          8.713
LGA    R     127      R     127          5.313
LGA    H     128      H     128          6.143
LGA    R     129      R     129          4.919
LGA    C     130      C     130          3.093
LGA    A     131      A     131          3.345
LGA    L     132      L     132          1.458
LGA    P     133      P     133          3.663
LGA    E     134      E     134          1.084
LGA    G     135      G     135          1.588
LGA    I     136      I     136          1.756
LGA    D     137      D     137          2.971
LGA    R     138      R     138          4.382
LGA    W     139      W     139          3.887
LGA    L     140      L     140          2.367
LGA    E     141      E     141          3.995
LGA    A     142      A     142          6.654
LGA    S     143      S     143          6.491
LGA    G     144      G     144          8.156

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  151  144    4.0    100    2.43    52.951    46.872     3.945

LGA_LOCAL      RMSD =  2.435  Number of atoms =  100  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.166  Number of atoms =  144 
Std_ALL_ATOMS  RMSD =  4.970  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.890249 * X  +  -0.449130 * Y  +   0.075759 * Z  +  39.654400
  Y_new =   0.190320 * X  +   0.215695 * Y  +  -0.957734 * Z  +  45.911320
  Z_new =   0.413806 * X  +   0.867040 * Y  +   0.277501 * Z  +  12.643874 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.261043   -1.880550  [ DEG:    72.2524   -107.7476 ]
  Theta =  -0.426631   -2.714961  [ DEG:   -24.4442   -155.5558 ]
  Phi   =   0.210613   -2.930980  [ DEG:    12.0672   -167.9328 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0362TS168_3                                  
REMARK     2: T0362.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0362TS168_3.T0362.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  151  144   4.0  100   2.43  46.872     4.97
REMARK  ---------------------------------------------------------- 
MOLECULE T0362TS168_3
PFRMAT TS
TARGET T0362
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      37.025  49.879  36.832  1.00 25.00           C
ATOM      2  CA  ASN     2      37.408  51.988  33.719  1.00 25.00           C
ATOM      3  CA  PRO     3      40.768  50.554  32.798  1.00 25.00           C
ATOM      4  CA  GLU     4      41.558  48.072  30.048  1.00 25.00           C
ATOM      5  CA  ASN     5      38.396  48.199  27.989  1.00 25.00           C
ATOM      6  CA  TRP     6      37.927  47.512  24.241  1.00 25.00           C
ATOM      7  CA  LEU     7      38.402  51.271  23.506  1.00 25.00           C
ATOM      8  CA  LEU     8      41.450  50.620  21.257  1.00 25.00           C
ATOM      9  CA  LEU     9      43.754  51.061  18.225  1.00 25.00           C
ATOM     10  CA  ARG    10      45.469  54.433  18.240  1.00 25.00           C
ATOM     11  CA  ARG    11      47.473  54.989  15.048  1.00 25.00           C
ATOM     12  CA  VAL    12      49.634  57.548  13.194  1.00 25.00           C
ATOM     13  CA  VAL    13      47.977  57.393   9.779  1.00 25.00           C
ATOM     14  CA  ARG    14      51.492  57.351   8.232  1.00 25.00           C
ATOM     15  CA  PHE    15      51.915  56.194   4.619  1.00 25.00           C
ATOM     16  CA  GLY    16      53.461  59.601   3.949  1.00 25.00           C
ATOM     17  CA  ASP    17      51.574  62.646   5.082  1.00 25.00           C
ATOM     18  CA  THR    18      50.654  63.754   1.601  1.00 25.00           C
ATOM     19  CA  ASP    19      49.993  63.040  -2.078  1.00 25.00           C
ATOM     20  CA  ALA    20      47.630  62.356  -4.981  1.00 25.00           C
ATOM     21  CA  ALA    21      45.115  64.287  -2.970  1.00 25.00           C
ATOM     22  CA  GLY    22      43.295  65.007   0.341  1.00 25.00           C
ATOM     23  CA  VAL    23      45.158  64.021   3.538  1.00 25.00           C
ATOM     24  CA  MET    24      46.749  60.518   3.602  1.00 25.00           C
ATOM     25  CA  HIS    25      44.694  59.590   0.574  1.00 25.00           C
ATOM     26  CA  PHE    26      42.032  56.799   0.433  1.00 25.00           C
ATOM     27  CA  HIS    27      44.781  54.149   0.133  1.00 25.00           C
ATOM     28  CA  GLN    28      46.463  55.503   3.296  1.00 25.00           C
ATOM     29  CA  LEU    29      43.120  55.377   5.158  1.00 25.00           C
ATOM     30  CA  PHE    30      42.588  51.762   4.009  1.00 25.00           C
ATOM     31  CA  ARG    31      46.106  50.838   5.207  1.00 25.00           C
ATOM     32  CA  TRP    32      45.406  52.467   8.601  1.00 25.00           C
ATOM     33  CA  CYS    33      42.120  50.520   8.886  1.00 25.00           C
ATOM     34  CA  HIS    34      43.951  47.261   8.054  1.00 25.00           C
ATOM     35  CA  GLU    35      46.590  48.035  10.720  1.00 25.00           C
ATOM     36  CA  SER    36      43.832  48.720  13.287  1.00 25.00           C
ATOM     37  CA  TRP    37      42.140  45.403  12.391  1.00 25.00           C
ATOM     38  CA  GLU    38      45.476  43.565  12.797  1.00 25.00           C
ATOM     39  CA  GLU    39      45.998  45.215  16.213  1.00 25.00           C
ATOM     40  CA  SER    40      42.472  44.175  17.283  1.00 25.00           C
ATOM     41  CA  LEU    41      43.163  40.580  16.155  1.00 25.00           C
ATOM     42  CA  GLU    42      46.440  40.563  18.139  1.00 25.00           C
ATOM     43  CA  SER    43      44.599  41.858  21.238  1.00 25.00           C
ATOM     44  CA  TYR    44      41.952  39.120  20.839  1.00 25.00           C
ATOM     45  CA  GLY    45      43.673  35.729  20.337  1.00 25.00           C
ATOM     46  CA  LEU    46      42.930  34.185  17.004  1.00 25.00           C
ATOM     47  CA  ASN    47      46.281  32.306  16.805  1.00 25.00           C
ATOM     48  CA  PRO    48      47.812  35.751  16.311  1.00 25.00           C
ATOM     49  CA  ALA    49      51.398  35.454  17.623  1.00 25.00           C
ATOM     50  CA  ASP    50      50.175  33.314  20.553  1.00 25.00           C
ATOM     51  CA  ILE    51      47.548  32.450  23.167  1.00 25.00           C
ATOM     52  CA  PHE    52      44.240  30.933  22.280  1.00 25.00           C
ATOM     53  CA  PRO    53      45.920  28.184  20.292  1.00 25.00           C
ATOM     54  CA  GLY    54      43.167  25.904  21.672  1.00 25.00           C
ATOM     55  CA  SER    55      41.609  26.303  18.206  1.00 25.00           C
ATOM     56  CA  ARG    56      44.496  25.183  15.899  1.00 25.00           C
ATOM     57  CA  LYS    57      47.768  23.510  16.913  1.00 25.00           C
ATOM     58  CA  SER    58      49.674  25.800  14.545  1.00 25.00           C
ATOM     59  CA  GLU    59      48.026  25.151  11.202  1.00 25.00           C
ATOM     60  CA  VAL    60      44.706  23.295  10.869  1.00 25.00           C
ATOM     61  CA  THR    61      41.745  25.292   9.596  1.00 25.00           C
ATOM     62  CA  PRO    62      42.281  29.075   9.559  1.00 25.00           C
ATOM     63  CA  GLU    63      45.544  30.884   8.605  1.00 25.00           C
ATOM     64  CA  VAL    64      44.162  34.258   9.806  1.00 25.00           C
ATOM     65  CA  ALA    65      45.864  37.004   7.779  1.00 25.00           C
ATOM     66  CA  LEU    66      44.112  40.164   6.471  1.00 25.00           C
ATOM     67  CA  PRO    67      41.501  40.557   3.731  1.00 25.00           C
ATOM     68  CA  ILE    68      38.154  41.889   2.488  1.00 25.00           C
ATOM     69  CA  ILE    69      37.210  44.140  -0.392  1.00 25.00           C
ATOM     70  CA  HIS    70      34.233  45.724   1.277  1.00 25.00           C
ATOM     71  CA  CYS    71      34.834  49.017   3.055  1.00 25.00           C
ATOM     72  CA  GLN    72      32.519  51.878   3.871  1.00 25.00           C
ATOM     73  CA  ALA    73      35.577  54.203   4.015  1.00 25.00           C
ATOM     74  CA  ASP    74      33.379  57.341   3.790  1.00 25.00           C
ATOM     75  CA  PHE    75      36.193  59.865   4.223  1.00 25.00           C
ATOM     76  CA  ARG    76      34.082  61.813   6.760  1.00 25.00           C
ATOM     77  CA  ARG    77      35.083  65.472   6.404  1.00 25.00           C
ATOM     78  CA  PRO    78      38.465  66.584   7.662  1.00 25.00           C
ATOM     79  CA  ILE    79      41.566  64.629   8.847  1.00 25.00           C
ATOM     80  CA  HIS    80      44.106  67.450   8.961  1.00 25.00           C
ATOM     81  CA  THR    81      46.598  69.197  11.248  1.00 25.00           C
ATOM     82  CA  GLY    82      48.953  66.174  11.669  1.00 25.00           C
ATOM     83  CA  ASP    83      46.066  64.551  13.554  1.00 25.00           C
ATOM     84  CA  ALA    84      46.560  61.649  15.935  1.00 25.00           C
ATOM     85  CA  LEU    85      44.508  59.243  13.847  1.00 25.00           C
ATOM     86  CA  ALA    86      41.945  57.480  16.015  1.00 25.00           C
ATOM     87  CA  MET    87      41.327  53.945  14.825  1.00 25.00           C
ATOM     88  CA  GLU    88      38.716  52.111  16.914  1.00 25.00           C
ATOM     89  CA  LEU    89      38.905  48.348  17.180  1.00 25.00           C
ATOM     90  CA  ARG    90      35.963  45.883  16.868  1.00 25.00           C
ATOM     91  CA  PRO    91      32.230  45.432  16.390  1.00 25.00           C
ATOM     92  CA  GLU    92      29.027  46.401  14.501  1.00 25.00           C
ATOM     93  CA  ARG    93      27.502  43.327  12.769  1.00 25.00           C
ATOM     94  CA  LEU    94      27.874  40.074  10.898  1.00 25.00           C
ATOM     95  CA  ASN    95      26.810  36.826   9.164  1.00 25.00           C
ATOM     96  CA  PRO    96      27.941  37.023   5.572  1.00 25.00           C
ATOM     97  CA  ASN    97      31.216  35.128   5.724  1.00 25.00           C
ATOM     98  CA  SER    98      32.203  37.893   8.169  1.00 25.00           C
ATOM     99  CA  PHE    99      33.243  40.048  11.167  1.00 25.00           C
ATOM    100  CA  GLN   100      34.947  43.477  11.158  1.00 25.00           C
ATOM    101  CA  VAL   101      33.451  46.958  11.533  1.00 25.00           C
ATOM    102  CA  HIS   102      35.606  49.814  12.871  1.00 25.00           C
ATOM    103  CA  PHE   103      34.048  53.247  13.704  1.00 25.00           C
ATOM    104  CA  GLU   104      36.702  55.968  14.089  1.00 25.00           C
ATOM    105  CA  PHE   105      36.944  58.882  16.552  1.00 25.00           C
ATOM    106  CA  ARG   106      39.129  61.992  16.696  1.00 25.00           C
ATOM    107  CA  CYS   107      40.163  65.368  18.109  1.00 25.00           C
ATOM    108  CA  GLU   108      38.847  68.605  19.533  1.00 25.00           C
ATOM    109  CA  GLU   109      35.123  68.103  19.670  1.00 25.00           C
ATOM    110  CA  GLN   110      34.941  67.087  15.958  1.00 25.00           C
ATOM    111  CA  ILE   111      33.800  63.592  15.160  1.00 25.00           C
ATOM    112  CA  ALA   112      36.247  63.210  12.279  1.00 25.00           C
ATOM    113  CA  ALA   113      37.378  59.906  10.735  1.00 25.00           C
ATOM    114  CA  HIS   114      36.469  56.794   8.878  1.00 25.00           C
ATOM    115  CA  ALA   115      37.480  53.260   9.752  1.00 25.00           C
ATOM    116  CA  LEU   116      35.684  50.571   7.791  1.00 25.00           C
ATOM    117  CA  ILE   117      37.630  47.372   8.621  1.00 25.00           C
ATOM    118  CA  ARG   118      36.417  44.576   6.365  1.00 25.00           C
ATOM    119  CA  HIS   119      38.873  42.346   8.226  1.00 25.00           C
ATOM    120  CA  LEU   120      36.955  39.391   6.944  1.00 25.00           C
ATOM    121  CA  ALA   121      39.625  37.255   8.497  1.00 25.00           C
ATOM    122  CA  ILE   122      39.936  35.440   5.172  1.00 25.00           C
ATOM    123  CA  ASN   123      43.131  33.495   4.493  1.00 25.00           C
ATOM    124  CA  ALA   124      44.375  30.537   2.430  1.00 25.00           C
ATOM    125  CA  GLN   125      47.206  32.017   0.472  1.00 25.00           C
ATOM    126  CA  THR   126      46.406  30.114  -2.712  1.00 25.00           C
ATOM    127  CA  ARG   127      42.949  28.438  -2.740  1.00 25.00           C
ATOM    128  CA  HIS   128      40.410  27.941   0.107  1.00 25.00           C
ATOM    129  CA  ARG   129      36.974  27.545   1.687  1.00 25.00           C
ATOM    130  CA  CYS   130      35.029  30.059   3.771  1.00 25.00           C
ATOM    131  CA  ALA   131      35.372  29.996   7.529  1.00 25.00           C
ATOM    132  CA  LEU   132      35.743  31.285  11.080  1.00 25.00           C
ATOM    133  CA  PRO   133      34.553  29.430  14.179  1.00 25.00           C
ATOM    134  CA  GLU   134      36.826  29.601  17.207  1.00 25.00           C
ATOM    135  CA  GLY   135      37.742  33.282  17.212  1.00 25.00           C
ATOM    136  CA  ILE   136      36.630  36.732  15.919  1.00 25.00           C
ATOM    137  CA  ASP   137      33.106  36.041  14.590  1.00 25.00           C
ATOM    138  CA  ARG   138      32.724  33.128  17.047  1.00 25.00           C
ATOM    139  CA  TRP   139      33.869  35.375  19.929  1.00 25.00           C
ATOM    140  CA  LEU   140      31.341  38.053  18.878  1.00 25.00           C
ATOM    141  CA  GLU   141      28.561  35.421  18.768  1.00 25.00           C
ATOM    142  CA  ALA   142      29.543  34.203  22.263  1.00 25.00           C
ATOM    143  CA  SER   143      29.469  37.803  23.566  1.00 25.00           C
ATOM    144  CA  GLY   144      27.339  36.449  26.410  1.00 25.00           C
ATOM    145  CA  VAL   145      24.307  34.245  27.119  1.00 25.00           C
ATOM    146  CA  GLY   146      24.101  32.987  30.682  1.00 25.00           C
ATOM    147  CA  LYS   147      25.462  36.308  32.021  1.00 25.00           C
ATOM    148  CA  ILE   148      22.496  38.678  31.776  1.00 25.00           C
ATOM    149  CA  GLY   149      19.191  39.843  30.322  1.00 25.00           C
ATOM    150  CA  SER   150      19.086  43.130  28.539  1.00 25.00           C
ATOM    151  CA  ILE   151      21.246  46.137  29.428  1.00 25.00           C
TER
END
