
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  151 (  151),  selected  144 , name T0362TS168_1
# Molecule2: number of CA atoms  144 ( 1169),  selected  144 , name T0362.pdb
# PARAMETERS: T0362TS168_1.T0362.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   144         1 - 144         4.62     4.62
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        24 - 49          1.95     6.97
  LONGEST_CONTINUOUS_SEGMENT:    26        25 - 50          1.84     7.42
  LONGEST_CONTINUOUS_SEGMENT:    26        70 - 95          1.93     4.81
  LCS_AVERAGE:     11.53

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        27 - 48          0.89     6.29
  LCS_AVERAGE:      5.58

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     M       1     M       1      4    5  144     3    4    4    4   17   23   38   61   69   83   93  107  116  123  130  132  135  137  139  142 
LCS_GDT     N       2     N       2      4    5  144     3    4    4    4    6   15   43   61   81   95  108  116  121  128  130  132  135  137  139  142 
LCS_GDT     P       3     P       3      4    5  144     3    4    4    4    7   21   29   40   48   62   81   89   97  114  123  132  135  137  139  142 
LCS_GDT     E       4     E       4      4    5  144     3    4    4    9   12   27   60   86  104  112  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     N       5     N       5      3    5  144     3    5   15   25   57   76   90   99  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     W       6     W       6      3    8  144     3    4   12   24   57   76   90   99  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L       7     L       7      3    8  144     3    4    9   17   39   61   83   98  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L       8     L       8      3    9  144     3   12   31   51   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L       9     L       9      5    9  144     3    4   18   44   65   81   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R      10     R      10      5    9  144     6   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R      11     R      11      5    9  144     5   16   33   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     V      12     V      12      5    9  144     3    8   23   42   60   77   91   99  108  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     V      13     V      13      5    9  144     3   16   31   45   66   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R      14     R      14      5    9  144     3    7   14   38   56   73   88   98  105  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     F      15     F      15      5    9  144     3    4   12   17   25   40   54   76   93  108  115  121  126  128  130  132  135  137  139  142 
LCS_GDT     G      16     G      16      5    9  144     7   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     D      17     D      17      5    8  144     3    7   30   50   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     T      18     T      18      5    6  144     3   16   33   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     D      19     D      19      5    6  144     6   16   31   48   66   83   91   99  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A      20     A      20      5    6  144     3    4   15   33   48   64   81   91  103  109  115  122  126  128  130  132  135  137  139  142 
LCS_GDT     A      21     A      21      5    6  144     3    5    7   17   24   37   48   66   82   98  110  116  123  128  130  132  135  137  139  142 
LCS_GDT     G      22     G      22      3    6  144     3    3    6    7   10   20   25   31   58   63   80   91  101  108  123  128  135  137  139  141 
LCS_GDT     V      23     V      23      3    4  144     3    3    8    8   12   20   22   58   67   72   90  106  113  123  129  132  135  137  139  142 
LCS_GDT     M      24     M      24      3   26  144     3    3    4   10   15   38   52   70   88  104  115  122  126  128  130  132  135  137  139  142 
LCS_GDT     H      25     H      25     18   26  144     3   13   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     F      26     F      26     20   26  144     3   11   30   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     H      27     H      27     22   26  144     3    9   23   42   68   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     Q      28     Q      28     22   26  144    13   20   25   50   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L      29     L      29     22   26  144    13   20   31   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     F      30     F      30     22   26  144    13   20   25   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R      31     R      31     22   26  144    13   20   31   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     W      32     W      32     22   26  144    13   20   34   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     C      33     C      33     22   26  144    13   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     H      34     H      34     22   26  144    13   20   34   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E      35     E      35     22   26  144    13   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     S      36     S      36     22   26  144    13   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     W      37     W      37     22   26  144    13   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E      38     E      38     22   26  144    13   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E      39     E      39     22   26  144    13   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     S      40     S      40     22   26  144    13   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L      41     L      41     22   26  144    11   20   33   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E      42     E      42     22   26  144    11   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     S      43     S      43     22   26  144    11   20   23   40   67   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     Y      44     Y      44     22   26  144     9   20   23   31   60   78   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     G      45     G      45     22   26  144     4   10   22   31   41   55   78   98  104  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L      46     L      46     22   26  144     4    9   20   28   41   69   86  100  104  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     N      47     N      47     22   26  144     3   19   23   42   65   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     P      48     P      48     22   26  144     7   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A      49     A      49      4   26  144     5   18   31   50   71   82   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     D      50     D      50      3   26  144     3    3   13   18   36   50   71   90  104  111  116  120  124  128  130  132  135  137  139  142 
LCS_GDT     I      51     I      51      5   10  144     3    4    7   14   30   34   52   66   77   93  105  113  118  124  129  132  135  137  139  142 
LCS_GDT     F      52     F      52      5   10  144     3    4    5    7   10   25   36   47   63   71   87   97  111  116  124  128  134  137  139  142 
LCS_GDT     P      53     P      53      5   10  144     3    4    5    7   10   19   29   38   47   58   70   83   92  102  112  120  126  133  136  142 
LCS_GDT     G      54     G      54      5   10  144     3    4    5    7   10   12   14   27   32   49   63   74   86   96  104  113  125  133  135  140 
LCS_GDT     S      55     S      55      5   10  144     3    4    5    7   18   24   33   42   50   88   96  103  115  124  128  131  135  137  139  142 
LCS_GDT     R      56     R      56      4   10  144     3    4    4    9   23   40   51   63   87  103  110  120  125  128  130  132  135  137  139  142 
LCS_GDT     K      57     K      57      4   10  144     3    4    4   16   21   27   72   79   93  109  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     S      58     S      58      4    8  144     3    4    9   20   33   52   68   94  101  110  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E      59     E      59      4    8  144     3    3   14   27   40   61   88   98  102  112  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     V      60     V      60      4    8  144     3    3    5   17   37   52   74   96  101  110  119  122  125  128  130  132  135  137  139  142 
LCS_GDT     T      61     T      61      4    8  144     3    9   17   38   50   73   89   98  105  113  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     P      62     P      62      4    8  144     3    6   30   49   68   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E      63     E      63      4   10  144     3    4   11   38   55   77   89  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     V      64     V      64      4   10  144     3    4   11   39   54   77   89  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A      65     A      65      4   10  144     3    4    8   19   43   62   84   98  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L      66     L      66      4   10  144     3    4   10   17   32   60   79   96  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     P      67     P      67      4   10  144     3    8   30   48   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     I      68     I      68      4   10  144     3    8   30   48   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     I      69     I      69      3   17  144     3    4   13   28   49   69   87  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     H      70     H      70      3   26  144     3   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     C      71     C      71      3   26  144     7   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     Q      72     Q      72      6   26  144     5   16   32   51   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A      73     A      73      6   26  144     4   16   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     D      74     D      74      6   26  144     4   15   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     F      75     F      75      6   26  144     6   16   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R      76     R      76      6   26  144     3   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R      77     R      77      6   26  144     3    8   20   41   62   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     P      78     P      78      9   26  144    11   20   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     I      79     I      79      9   26  144     7   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     H      80     H      80      9   26  144     3   17   34   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     T      81     T      81      9   26  144     3   13   34   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     G      82     G      82      9   26  144     3   13   31   50   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     D      83     D      83      9   26  144     3   16   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A      84     A      84      9   26  144     6   16   32   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L      85     L      85      9   26  144     6   16   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A      86     A      86      9   26  144     4    7   15   35   55   73   91  100  110  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     M      87     M      87      9   26  144     4    7   22   38   62   81   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E      88     E      88      6   26  144     4   16   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L      89     L      89      6   26  144     4    5   23   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R      90     R      90      6   26  144     3   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     P      91     P      91      6   26  144     3   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E      92     E      92      4   26  144     3   11   31   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R      93     R      93      4   26  144     3   14   23   39   68   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L      94     L      94      5   26  144     3   11   27   47   71   80   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     N      95     N      95      6   26  144     3   13   33   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     P      96     P      96      6   20  144     3    6   22   31   58   79   90  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     N      97     N      97      6   20  144     3   11   23   44   68   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     S      98     S      98      6   17  144     3   10   33   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     F      99     F      99      6   17  144     4   11   31   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     Q     100     Q     100      6   17  144     4    6   16   26   53   75   90   99  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     V     101     V     101      6   18  144     7   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     H     102     H     102      6   18  144     4    9   31   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     F     103     F     103      6   18  144     4    6   10   23   42   74   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E     104     E     104      6   18  144    11   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     F     105     F     105      5   18  144     3   12   27   50   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R     106     R     106      5   18  144     7   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     C     107     C     107      5   18  144     3    9   30   49   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E     108     E     108      4   18  144     3    7   19   47   68   81   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E     109     E     109      4   18  144     3    5    9   15   40   72   88   99  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     Q     110     Q     110      4   18  144     3    5   10   37   61   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     I     111     I     111      4   18  144     3    6   30   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A     112     A     112      3   18  144     3   16   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A     113     A     113      4   18  144     2   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     H     114     H     114      4   18  144     4    7   25   39   63   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A     115     A     115      5   18  144     3   11   28   50   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L     116     L     116      5   18  144     7   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     I     117     I     117      5   18  144     3    7   19   44   68   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R     118     R     118      5   18  144     3    8   24   47   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     H     119     H     119      5    9  144     3    4   10   15   43   61   84   98  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L     120     L     120      3    9  144     3    4    6    9   14   36   60   69   92  104  111  118  125  128  130  132  135  137  139  142 
LCS_GDT     A     121     A     121      3    9  144     3    4    8   22   47   66   87   99  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     I     122     I     122      3    9  144     3    4    5    9   25   47   78   96  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     N     123     N     123      3    9  144     3    3    5    8   12   17   23   37   81  107  115  118  123  126  129  132  134  137  139  142 
LCS_GDT     A     124     A     124      3   10  144     3    6   12   39   58   77   89  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     Q     125     Q     125      3   10  144     3    5   10   33   46   69   86  100  111  114  119  122  126  128  130  132  134  137  139  142 
LCS_GDT     T     126     T     126      4   10  144     3    4    7   33   46   72   86  100  111  114  119  122  126  128  130  132  134  137  139  142 
LCS_GDT     R     127     R     127      4   10  144     3   16   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     H     128     H     128      4   10  144     4    9   30   50   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R     129     R     129      6   10  144     4   15   32   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     C     130     C     130      6   10  144     4   17   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A     131     A     131      6   10  144     4   16   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L     132     L     132      6   10  144     3   16   35   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     P     133     P     133      6   10  144     3   15   32   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     E     134     E     134      6   10  144     3    9   23   41   67   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     G     135     G     135      3   10  144     3    4    9   27   41   67   88   98  103  113  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     I     136     I     136      9   10  144     8   16   32   52   71   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     D     137     D     137      9    9  144     8    8   19   32   53   78   88   99  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     R     138     R     138      9    9  144     8    8   24   43   68   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     W     139     W     139      9    9  144     8    8   13   39   63   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     L     140     L     140      9    9  144     8    8    9   10   12   21   32   52   80  101  115  122  126  128  130  132  135  137  139  142 
LCS_GDT     E     141     E     141      9    9  144     8    8    9   20   44   69   88   99  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     A     142     A     142      9    9  144     8    9   20   45   68   83   91  100  111  114  119  122  126  128  130  132  135  137  139  142 
LCS_GDT     S     143     S     143      9    9  144     8    8    9   10   15   20   23   36   45   73   92  104  117  124  128  132  135  137  139  142 
LCS_GDT     G     144     G     144      9    9  144     3    3    9   10   11   17   21   27   43   55   72   87  111  119  124  130  134  136  139  142 
LCS_AVERAGE  LCS_A:  39.04  (   5.58   11.53  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     20     35     52     71     83     91    100    111    114    119    122    126    128    130    132    135    137    139    142 
GDT PERCENT_CA   9.03  13.89  24.31  36.11  49.31  57.64  63.19  69.44  77.08  79.17  82.64  84.72  87.50  88.89  90.28  91.67  93.75  95.14  96.53  98.61
GDT RMS_LOCAL    0.24   0.57   1.11   1.40   1.71   1.98   2.12   2.40   2.71   2.77   2.95   3.08   3.26   3.36   3.47   3.59   3.97   3.95   4.09   4.40
GDT RMS_ALL_CA   5.91   6.39   4.80   4.79   4.83   4.73   4.75   4.85   4.81   4.78   4.76   4.74   4.71   4.70   4.69   4.70   4.64   4.65   4.65   4.63

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         11.135
LGA    N       2      N       2          9.674
LGA    P       3      P       3         11.931
LGA    E       4      E       4          6.401
LGA    N       5      N       5          4.997
LGA    W       6      W       6          4.902
LGA    L       7      L       7          5.547
LGA    L       8      L       8          2.762
LGA    L       9      L       9          3.318
LGA    R      10      R      10          1.677
LGA    R      11      R      11          2.359
LGA    V      12      V      12          4.146
LGA    V      13      V      13          3.736
LGA    R      14      R      14          5.100
LGA    F      15      F      15          8.237
LGA    G      16      G      16          2.037
LGA    D      17      D      17          1.707
LGA    T      18      T      18          3.159
LGA    D      19      D      19          4.385
LGA    A      20      A      20          8.053
LGA    A      21      A      21         11.142
LGA    G      22      G      22         13.933
LGA    V      23      V      23         11.702
LGA    M      24      M      24          7.061
LGA    H      25      H      25          1.730
LGA    F      26      F      26          2.227
LGA    H      27      H      27          2.829
LGA    Q      28      Q      28          1.782
LGA    L      29      L      29          1.330
LGA    F      30      F      30          1.492
LGA    R      31      R      31          1.437
LGA    W      32      W      32          0.994
LGA    C      33      C      33          0.913
LGA    H      34      H      34          1.228
LGA    E      35      E      35          0.946
LGA    S      36      S      36          0.081
LGA    W      37      W      37          0.667
LGA    E      38      E      38          0.469
LGA    E      39      E      39          0.538
LGA    S      40      S      40          1.001
LGA    L      41      L      41          1.346
LGA    E      42      E      42          1.090
LGA    S      43      S      43          2.139
LGA    Y      44      Y      44          2.866
LGA    G      45      G      45          4.194
LGA    L      46      L      46          3.871
LGA    N      47      N      47          2.400
LGA    P      48      P      48          0.731
LGA    A      49      A      49          2.772
LGA    D      50      D      50          7.362
LGA    I      51      I      51          9.459
LGA    F      52      F      52         12.476
LGA    P      53      P      53         15.485
LGA    G      54      G      54         15.875
LGA    S      55      S      55         11.612
LGA    R      56      R      56          9.427
LGA    K      57      K      57          7.103
LGA    S      58      S      58          8.118
LGA    E      59      E      59          6.641
LGA    V      60      V      60          8.607
LGA    T      61      T      61          6.429
LGA    P      62      P      62          3.532
LGA    E      63      E      63          3.518
LGA    V      64      V      64          3.851
LGA    A      65      A      65          5.258
LGA    L      66      L      66          4.904
LGA    P      67      P      67          2.235
LGA    I      68      I      68          1.931
LGA    I      69      I      69          3.563
LGA    H      70      H      70          2.439
LGA    C      71      C      71          1.988
LGA    Q      72      Q      72          3.240
LGA    A      73      A      73          2.431
LGA    D      74      D      74          2.474
LGA    F      75      F      75          2.134
LGA    R      76      R      76          1.586
LGA    R      77      R      77          3.979
LGA    P      78      P      78          0.528
LGA    I      79      I      79          1.254
LGA    H      80      H      80          1.699
LGA    T      81      T      81          1.809
LGA    G      82      G      82          2.350
LGA    D      83      D      83          2.280
LGA    A      84      A      84          2.856
LGA    L      85      L      85          1.744
LGA    A      86      A      86          3.959
LGA    M      87      M      87          3.105
LGA    E      88      E      88          1.666
LGA    L      89      L      89          2.509
LGA    R      90      R      90          1.355
LGA    P      91      P      91          2.266
LGA    E      92      E      92          1.961
LGA    R      93      R      93          2.417
LGA    L      94      L      94          3.982
LGA    N      95      N      95          1.803
LGA    P      96      P      96          2.783
LGA    N      97      N      97          1.957
LGA    S      98      S      98          1.462
LGA    F      99      F      99          1.948
LGA    Q     100      Q     100          4.412
LGA    V     101      V     101          1.369
LGA    H     102      H     102          2.346
LGA    F     103      F     103          3.779
LGA    E     104      E     104          0.498
LGA    F     105      F     105          2.003
LGA    R     106      R     106          1.163
LGA    C     107      C     107          1.944
LGA    E     108      E     108          2.717
LGA    E     109      E     109          4.901
LGA    Q     110      Q     110          3.569
LGA    I     111      I     111          1.812
LGA    A     112      A     112          1.639
LGA    A     113      A     113          1.528
LGA    H     114      H     114          2.829
LGA    A     115      A     115          2.564
LGA    L     116      L     116          1.486
LGA    I     117      I     117          3.005
LGA    R     118      R     118          2.694
LGA    H     119      H     119          4.898
LGA    L     120      L     120          7.573
LGA    A     121      A     121          4.977
LGA    I     122      I     122          5.275
LGA    N     123      N     123          6.768
LGA    A     124      A     124          2.977
LGA    Q     125      Q     125          3.785
LGA    T     126      T     126          3.476
LGA    R     127      R     127          2.499
LGA    H     128      H     128          2.641
LGA    R     129      R     129          3.652
LGA    C     130      C     130          2.424
LGA    A     131      A     131          2.813
LGA    L     132      L     132          2.625
LGA    P     133      P     133          3.236
LGA    E     134      E     134          3.587
LGA    G     135      G     135          6.003
LGA    I     136      I     136          2.975
LGA    D     137      D     137          5.686
LGA    R     138      R     138          3.907
LGA    W     139      W     139          3.687
LGA    L     140      L     140          6.694
LGA    E     141      E     141          5.607
LGA    A     142      A     142          2.922
LGA    S     143      S     143          8.141
LGA    G     144      G     144          9.507

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  151  144    4.0    100    2.40    52.778    46.898     3.999

LGA_LOCAL      RMSD =  2.401  Number of atoms =  100  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.054  Number of atoms =  144 
Std_ALL_ATOMS  RMSD =  4.620  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.487939 * X  +  -0.727069 * Y  +  -0.482998 * Z  +  39.500603
  Y_new =  -0.662863 * X  +   0.051373 * Y  +  -0.746977 * Z  +  45.624409
  Z_new =   0.567916 * X  +   0.684640 * Y  +  -0.456880 * Z  +  12.862456 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.159257   -0.982336  [ DEG:   123.7163    -56.2837 ]
  Theta =  -0.603972   -2.537620  [ DEG:   -34.6051   -145.3949 ]
  Phi   =  -0.936245    2.205347  [ DEG:   -53.6429    126.3571 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0362TS168_1                                  
REMARK     2: T0362.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0362TS168_1.T0362.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  151  144   4.0  100   2.40  46.898     4.62
REMARK  ---------------------------------------------------------- 
MOLECULE T0362TS168_1
PFRMAT TS
TARGET T0362
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      41.085  50.060  37.785  1.00 25.00           C
ATOM      2  CA  ASN     2      43.229  50.638  34.661  1.00 25.00           C
ATOM      3  CA  PRO     3      40.862  53.253  33.329  1.00 25.00           C
ATOM      4  CA  GLU     4      41.121  51.289  30.095  1.00 25.00           C
ATOM      5  CA  ASN     5      38.370  51.412  27.396  1.00 25.00           C
ATOM      6  CA  TRP     6      38.295  49.890  23.878  1.00 25.00           C
ATOM      7  CA  LEU     7      39.828  53.146  22.762  1.00 25.00           C
ATOM      8  CA  LEU     8      42.202  51.344  20.383  1.00 25.00           C
ATOM      9  CA  LEU     9      45.389  50.264  18.623  1.00 25.00           C
ATOM     10  CA  ARG    10      45.880  53.972  17.813  1.00 25.00           C
ATOM     11  CA  ARG    11      47.030  54.682  14.324  1.00 25.00           C
ATOM     12  CA  VAL    12      49.044  56.528  11.751  1.00 25.00           C
ATOM     13  CA  VAL    13      49.570  58.058   8.327  1.00 25.00           C
ATOM     14  CA  ARG    14      52.456  55.687   7.615  1.00 25.00           C
ATOM     15  CA  PHE    15      52.961  55.033   3.890  1.00 25.00           C
ATOM     16  CA  GLY    16      54.076  58.476   2.775  1.00 25.00           C
ATOM     17  CA  ASP    17      51.448  60.782   4.272  1.00 25.00           C
ATOM     18  CA  THR    18      50.000  60.947   0.797  1.00 25.00           C
ATOM     19  CA  ASP    19      48.516  60.845  -2.686  1.00 25.00           C
ATOM     20  CA  ALA    20      47.154  61.814  -6.070  1.00 25.00           C
ATOM     21  CA  ALA    21      43.846  60.017  -6.822  1.00 25.00           C
ATOM     22  CA  GLY    22      44.245  57.524  -3.903  1.00 25.00           C
ATOM     23  CA  VAL    23      40.780  58.776  -2.810  1.00 25.00           C
ATOM     24  CA  MET    24      40.643  61.110   0.226  1.00 25.00           C
ATOM     25  CA  HIS    25      44.331  60.586   0.878  1.00 25.00           C
ATOM     26  CA  PHE    26      43.317  56.915   0.987  1.00 25.00           C
ATOM     27  CA  HIS    27      46.031  54.217   0.842  1.00 25.00           C
ATOM     28  CA  GLN    28      47.464  55.443   4.176  1.00 25.00           C
ATOM     29  CA  LEU    29      43.971  55.336   5.744  1.00 25.00           C
ATOM     30  CA  PHE    30      43.470  51.768   4.446  1.00 25.00           C
ATOM     31  CA  ARG    31      46.855  50.735   5.909  1.00 25.00           C
ATOM     32  CA  TRP    32      45.899  52.283   9.279  1.00 25.00           C
ATOM     33  CA  CYS    33      42.565  50.399   9.226  1.00 25.00           C
ATOM     34  CA  HIS    34      44.398  47.126   8.454  1.00 25.00           C
ATOM     35  CA  GLU    35      46.814  47.768  11.356  1.00 25.00           C
ATOM     36  CA  SER    36      43.860  48.439  13.699  1.00 25.00           C
ATOM     37  CA  TRP    37      42.189  45.184  12.564  1.00 25.00           C
ATOM     38  CA  GLU    38      45.442  43.265  13.195  1.00 25.00           C
ATOM     39  CA  GLU    39      45.702  44.806  16.691  1.00 25.00           C
ATOM     40  CA  SER    40      42.077  43.811  17.426  1.00 25.00           C
ATOM     41  CA  LEU    41      42.795  40.236  16.255  1.00 25.00           C
ATOM     42  CA  GLU    42      45.889  40.093  18.506  1.00 25.00           C
ATOM     43  CA  SER    43      43.816  41.338  21.477  1.00 25.00           C
ATOM     44  CA  TYR    44      41.160  38.670  20.773  1.00 25.00           C
ATOM     45  CA  GLY    45      42.823  35.295  20.063  1.00 25.00           C
ATOM     46  CA  LEU    46      42.587  35.124  16.275  1.00 25.00           C
ATOM     47  CA  ASN    47      46.153  33.727  16.563  1.00 25.00           C
ATOM     48  CA  PRO    48      48.766  35.285  14.256  1.00 25.00           C
ATOM     49  CA  ALA    49      52.303  33.859  14.599  1.00 25.00           C
ATOM     50  CA  ASP    50      51.802  33.457  18.375  1.00 25.00           C
ATOM     51  CA  ILE    51      49.875  36.681  18.961  1.00 25.00           C
ATOM     52  CA  PHE    52      47.758  34.837  21.458  1.00 25.00           C
ATOM     53  CA  PRO    53      48.513  31.152  21.671  1.00 25.00           C
ATOM     54  CA  GLY    54      46.962  28.402  19.546  1.00 25.00           C
ATOM     55  CA  SER    55      45.670  28.222  15.973  1.00 25.00           C
ATOM     56  CA  ARG    56      49.153  28.471  14.592  1.00 25.00           C
ATOM     57  CA  LYS    57      50.901  25.059  14.299  1.00 25.00           C
ATOM     58  CA  SER    58      48.011  23.799  16.475  1.00 25.00           C
ATOM     59  CA  GLU    59      46.560  22.792  13.057  1.00 25.00           C
ATOM     60  CA  VAL    60      43.017  24.094  12.998  1.00 25.00           C
ATOM     61  CA  THR    61      43.912  25.583   9.552  1.00 25.00           C
ATOM     62  CA  PRO    62      43.624  29.119  11.010  1.00 25.00           C
ATOM     63  CA  GLU    63      43.976  30.359   7.491  1.00 25.00           C
ATOM     64  CA  VAL    64      41.339  32.925   8.613  1.00 25.00           C
ATOM     65  CA  ALA    65      42.632  36.455   8.040  1.00 25.00           C
ATOM     66  CA  LEU    66      42.232  39.819   6.307  1.00 25.00           C
ATOM     67  CA  PRO    67      39.759  39.618   3.501  1.00 25.00           C
ATOM     68  CA  ILE    68      38.271  43.060   2.983  1.00 25.00           C
ATOM     69  CA  ILE    69      36.134  44.716   0.268  1.00 25.00           C
ATOM     70  CA  HIS    70      33.004  44.130   2.383  1.00 25.00           C
ATOM     71  CA  CYS    71      33.394  47.879   3.222  1.00 25.00           C
ATOM     72  CA  GLN    72      31.204  50.983   3.534  1.00 25.00           C
ATOM     73  CA  ALA    73      34.535  52.826   3.559  1.00 25.00           C
ATOM     74  CA  ASP    74      33.273  56.286   4.420  1.00 25.00           C
ATOM     75  CA  PHE    75      35.259  59.538   4.653  1.00 25.00           C
ATOM     76  CA  ARG    76      34.757  62.894   6.342  1.00 25.00           C
ATOM     77  CA  ARG    77      38.196  63.989   5.088  1.00 25.00           C
ATOM     78  CA  PRO    78      40.610  66.665   6.449  1.00 25.00           C
ATOM     79  CA  ILE    79      42.828  63.924   7.968  1.00 25.00           C
ATOM     80  CA  HIS    80      45.431  66.626   8.650  1.00 25.00           C
ATOM     81  CA  THR    81      49.040  65.311   8.747  1.00 25.00           C
ATOM     82  CA  GLY    82      49.239  65.728  12.523  1.00 25.00           C
ATOM     83  CA  ASP    83      46.346  63.248  12.421  1.00 25.00           C
ATOM     84  CA  ALA    84      47.266  60.411  14.735  1.00 25.00           C
ATOM     85  CA  LEU    85      43.927  58.677  14.726  1.00 25.00           C
ATOM     86  CA  ALA    86      41.717  55.633  15.197  1.00 25.00           C
ATOM     87  CA  MET    87      39.564  52.620  14.488  1.00 25.00           C
ATOM     88  CA  GLU    88      37.286  51.523  17.383  1.00 25.00           C
ATOM     89  CA  LEU    89      36.012  47.947  17.950  1.00 25.00           C
ATOM     90  CA  ARG    90      32.268  47.684  17.327  1.00 25.00           C
ATOM     91  CA  PRO    91      32.699  43.900  16.913  1.00 25.00           C
ATOM     92  CA  GLU    92      29.390  44.244  15.055  1.00 25.00           C
ATOM     93  CA  ARG    93      28.761  41.570  12.464  1.00 25.00           C
ATOM     94  CA  LEU    94      29.186  37.741  12.585  1.00 25.00           C
ATOM     95  CA  ASN    95      26.024  36.161  11.200  1.00 25.00           C
ATOM     96  CA  PRO    96      26.149  33.200   8.809  1.00 25.00           C
ATOM     97  CA  ASN    97      29.465  34.566   7.398  1.00 25.00           C
ATOM     98  CA  SER    98      31.932  37.310   8.349  1.00 25.00           C
ATOM     99  CA  PHE    99      33.173  40.162  10.510  1.00 25.00           C
ATOM    100  CA  GLN   100      34.918  42.884  12.487  1.00 25.00           C
ATOM    101  CA  VAL   101      33.200  46.253  12.212  1.00 25.00           C
ATOM    102  CA  HIS   102      34.714  49.613  13.055  1.00 25.00           C
ATOM    103  CA  PHE   103      32.665  52.715  13.906  1.00 25.00           C
ATOM    104  CA  GLU   104      35.370  55.348  13.779  1.00 25.00           C
ATOM    105  CA  PHE   105      37.231  58.474  15.044  1.00 25.00           C
ATOM    106  CA  ARG   106      39.375  61.500  15.831  1.00 25.00           C
ATOM    107  CA  CYS   107      39.669  64.948  17.498  1.00 25.00           C
ATOM    108  CA  GLU   108      37.759  67.547  19.592  1.00 25.00           C
ATOM    109  CA  GLU   109      34.875  68.539  17.375  1.00 25.00           C
ATOM    110  CA  GLN   110      36.519  67.826  13.988  1.00 25.00           C
ATOM    111  CA  ILE   111      35.453  64.210  14.107  1.00 25.00           C
ATOM    112  CA  ALA   112      36.328  61.799  11.321  1.00 25.00           C
ATOM    113  CA  ALA   113      36.386  58.486   9.422  1.00 25.00           C
ATOM    114  CA  HIS   114      36.748  54.867   8.203  1.00 25.00           C
ATOM    115  CA  ALA   115      33.098  53.921   8.871  1.00 25.00           C
ATOM    116  CA  LEU   116      33.028  50.152   8.331  1.00 25.00           C
ATOM    117  CA  ILE   117      36.079  47.856   8.452  1.00 25.00           C
ATOM    118  CA  ARG   118      34.070  44.754   7.333  1.00 25.00           C
ATOM    119  CA  HIS   119      37.369  42.993   8.116  1.00 25.00           C
ATOM    120  CA  LEU   120      38.187  39.507   9.452  1.00 25.00           C
ATOM    121  CA  ALA   121      37.128  35.855   9.351  1.00 25.00           C
ATOM    122  CA  ILE   122      37.507  35.179   5.627  1.00 25.00           C
ATOM    123  CA  ASN   123      40.532  34.196   3.597  1.00 25.00           C
ATOM    124  CA  ALA   124      42.806  31.884   1.694  1.00 25.00           C
ATOM    125  CA  GLN   125      42.714  29.859  -1.582  1.00 25.00           C
ATOM    126  CA  THR   126      39.613  28.743  -3.393  1.00 25.00           C
ATOM    127  CA  ARG   127      38.100  27.271  -0.234  1.00 25.00           C
ATOM    128  CA  HIS   128      35.039  28.695   1.551  1.00 25.00           C
ATOM    129  CA  ARG   129      33.134  26.873   4.199  1.00 25.00           C
ATOM    130  CA  CYS   130      32.984  28.137   7.756  1.00 25.00           C
ATOM    131  CA  ALA   131      31.510  27.523  11.185  1.00 25.00           C
ATOM    132  CA  LEU   132      34.170  29.937  12.531  1.00 25.00           C
ATOM    133  CA  PRO   133      36.631  29.392  15.363  1.00 25.00           C
ATOM    134  CA  GLU   134      34.437  28.695  18.389  1.00 25.00           C
ATOM    135  CA  GLY   135      33.300  32.220  17.815  1.00 25.00           C
ATOM    136  CA  ILE   136      36.172  34.640  17.758  1.00 25.00           C
ATOM    137  CA  ASP   137      37.141  34.043  21.414  1.00 25.00           C
ATOM    138  CA  ARG   138      36.529  37.740  22.206  1.00 25.00           C
ATOM    139  CA  TRP   139      33.100  37.561  20.510  1.00 25.00           C
ATOM    140  CA  LEU   140      32.230  34.433  22.542  1.00 25.00           C
ATOM    141  CA  GLU   141      33.289  36.205  25.768  1.00 25.00           C
ATOM    142  CA  ALA   142      31.119  39.224  24.851  1.00 25.00           C
ATOM    143  CA  SER   143      28.141  36.910  24.178  1.00 25.00           C
ATOM    144  CA  GLY   144      26.354  35.757  27.329  1.00 25.00           C
ATOM    145  CA  VAL   145      26.608  33.366  30.273  1.00 25.00           C
ATOM    146  CA  GLY   146      24.306  35.531  32.409  1.00 25.00           C
ATOM    147  CA  LYS   147      26.833  37.215  34.605  1.00 25.00           C
ATOM    148  CA  ILE   148      25.463  40.737  34.272  1.00 25.00           C
ATOM    149  CA  GLY   149      22.796  43.465  34.722  1.00 25.00           C
ATOM    150  CA  SER   150      20.415  45.811  32.817  1.00 25.00           C
ATOM    151  CA  ILE   151      21.646  49.362  32.581  1.00 25.00           C
TER
END
