
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  119 (  119),  selected  119 , name T0356TS677_2-D1
# Molecule2: number of CA atoms  124 (  963),  selected  119 , name T0356_D1.pdb
# PARAMETERS: T0356TS677_2-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    34        28 - 63          4.97    37.67
  LCS_AVERAGE:     21.73

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        35 - 53          1.95    37.25
  LONGEST_CONTINUOUS_SEGMENT:    19        36 - 54          1.96    37.22
  LCS_AVERAGE:      8.97

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        35 - 48          0.72    36.10
  LCS_AVERAGE:      5.71

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      0   11   31     0    2    4    5    7    8   11   11   12   13   16   19   24   25   29   31   36   40   42   45 
LCS_GDT     D       8     D       8     10   12   32     8    9    9   10   12   14   15   17   19   22   24   28   31   33   38   39   41   41   42   45 
LCS_GDT     L       9     L       9     10   12   33     8    9    9   10   12   14   15   17   20   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     R      10     R      10     10   12   33     8    9    9   10   11   14   15   17   18   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     D      11     D      11     10   12   33     8    9    9   10   12   14   15   17   20   23   25   29   31   34   38   39   41   41   43   46 
LCS_GDT     F      12     F      12     10   12   33     8    9    9   10   12   14   15   17   20   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     L      13     L      13     10   12   33     8    9    9   10   12   14   15   17   20   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     T      14     T      14     10   12   33     8    9    9   10   12   14   15   17   20   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     L      15     L      15     10   12   33     8    9    9   10   12   14   15   17   20   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     L      16     L      16     10   12   33     5    9    9   10   10   13   15   17   20   22   24   29   31   34   38   39   41   41   43   46 
LCS_GDT     E      17     E      17     10   12   33     4    4    9   10   10   10   11   16   19   22   24   29   31   35   38   39   41   41   42   45 
LCS_GDT     Q      18     Q      18      5   12   33     4    4    5    8   10   14   15   17   20   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     Q      19     Q      19      5   12   33     4    4    7   10   12   14   15   17   20   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     G      20     G      20      5    7   33     4    5    5    5    6   10   14   17   20   22   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     E      21     E      21      5    7   33     3    5    6    9   12   14   15   17   20   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     L      22     L      22      5    7   33     3    5    6    9   12   14   15   17   20   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     K      23     K      23      5    7   33     3    5    7   10   12   14   15   17   20   22   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     R      24     R      24      5    7   33     3    5    7   10   12   14   15   17   20   22   24   28   31   35   38   39   41   41   43   46 
LCS_GDT     I      25     I      25      4    6   33     3    4    4    6    9   13   14   17   20   22   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     T      26     T      26      5    6   33     3    4    5    7    9   13   14   16   20   22   24   28   31   35   38   39   41   41   43   46 
LCS_GDT     L      27     L      27      5    6   33     3    4    5    6    6    8   10   15   17   21   25   27   31   35   38   39   41   41   43   46 
LCS_GDT     P      28     P      28      5    6   34     3    4    5    6    8   11   13   15   17   20   25   27   30   35   38   39   41   41   43   46 
LCS_GDT     V      29     V      29      5    6   34     3    4    5    6    8    8   10   14   17   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     D      30     D      30      5    6   34     3    4    5    6    8   11   14   16   20   23   25   29   31   35   38   39   41   41   43   46 
LCS_GDT     P      31     P      31      4    6   34     3    3    5    7   11   17   18   18   22   23   26   29   31   35   38   39   41   41   43   46 
LCS_GDT     H      32     H      32      4   17   34     3    3    4    8    9   19   22   24   25   26   28   29   31   35   38   39   41   41   43   46 
LCS_GDT     L      33     L      33      4   18   34     3    3    4    8    9   13   21   24   25   25   26   29   31   35   38   39   41   41   43   46 
LCS_GDT     I      35     I      35     14   19   34     3   13   14   14   16   17   20   24   25   25   28   29   31   35   38   39   41   41   43   46 
LCS_GDT     T      36     T      36     14   19   34     5   13   14   14   18   20   22   24   25   26   28   29   31   35   38   39   41   41   43   46 
LCS_GDT     E      37     E      37     14   19   34     8   13   14   15   18   20   22   24   25   26   28   29   31   35   38   39   41   41   43   46 
LCS_GDT     I      38     I      38     14   19   34     8   13   14   14   18   20   22   24   25   26   28   29   31   35   38   39   41   41   43   46 
LCS_GDT     A      39     A      39     14   19   34     8   13   14   14   18   20   22   24   25   26   28   29   31   35   38   39   41   41   43   46 
LCS_GDT     D      40     D      40     14   19   34     8   13   14   15   18   20   22   24   25   26   28   29   31   35   38   39   41   41   43   46 
LCS_GDT     R      41     R      41     14   19   34     8   13   14   15   18   20   22   24   25   26   28   29   31   35   38   39   41   41   43   46 
LCS_GDT     T      42     T      42     14   19   34     7   13   14   15   18   20   22   24   25   26   28   29   31   35   38   39   41   41   43   46 
LCS_GDT     L      43     L      43     14   19   34     8   13   14   15   18   20   22   24   25   26   28   29   30   35   38   39   41   41   43   46 
LCS_GDT     R      44     R      44     14   19   34     8   13   14   15   18   20   22   24   25   26   28   29   30   34   37   39   41   41   43   46 
LCS_GDT     A      45     A      45     14   19   34     8   13   14   15   18   20   22   24   25   26   28   29   31   35   38   39   41   41   43   46 
LCS_GDT     G      46     G      46     14   19   34     7   13   14   15   18   20   22   24   25   26   28   29   30   35   38   39   41   41   43   46 
LCS_GDT     G      47     G      47     14   19   34     3   13   14   15   18   20   22   24   25   26   28   29   30   35   38   39   41   41   43   46 
LCS_GDT     P      48     P      48     14   19   34     3    7   14   15   18   20   22   24   25   26   28   29   30   30   32   33   34   36   40   44 
LCS_GDT     A      49     A      49      4   19   34     3    4    6   15   18   20   22   24   25   26   28   29   30   30   32   33   35   36   38   42 
LCS_GDT     L      50     L      50      4   19   34     3    3    5    7   15   20   22   24   25   26   28   29   30   30   32   33   34   36   37   39 
LCS_GDT     L      51     L      51      4   19   34     3    9   11   15   18   20   22   24   25   26   28   29   30   30   32   33   34   36   37   39 
LCS_GDT     F      52     F      52      4   19   34     4    4    4    6    7   13   22   23   25   26   28   29   30   30   32   33   34   36   37   39 
LCS_GDT     E      53     E      53      4   19   34     4    4    4    6   14   19   22   24   25   26   28   29   30   30   32   33   34   36   37   39 
LCS_GDT     N      54     N      54      4   19   34     4    9   11   15   18   20   22   24   25   26   28   29   30   30   32   33   34   36   37   39 
LCS_GDT     P      55     P      55      4   18   34     4    9   11   15   18   20   22   24   25   26   28   29   30   30   32   33   35   39   43   44 
LCS_GDT     K      56     K      56      4   18   34     4    9   11   15   18   20   22   24   25   26   28   29   30   30   31   33   35   36   38   43 
LCS_GDT     G      57     G      57      4   18   34     4    9   11   15   18   20   22   24   25   26   28   29   30   30   32   33   37   41   43   46 
LCS_GDT     Y      58     Y      58      3    4   34     0    3    3    3    6   10   15   20   22   26   28   29   30   30   32   35   38   41   43   46 
LCS_GDT     S      59     S      59      3    4   34     0    3    3    3    4    7   12   16   21   26   28   29   30   30   32   33   35   38   43   46 
LCS_GDT     P      61     P      61      3    3   34     0    3    3    3   10   17   18   20   22   26   28   29   30   30   32   33   34   36   37   38 
LCS_GDT     V      62     V      62      3    3   34     1    3    3    3    4    6    9   13   17   25   28   29   30   30   32   33   34   36   37   38 
LCS_GDT     L      63     L      63      3    4   34     1    3    4    4    4    6    9   13   15   17   18   24   25   29   29   32   33   36   37   38 
LCS_GDT     C      64     C      64      3    4   33     3    3    4    4    4    6    9   10   12   14   15   18   24   27   29   32   33   36   37   41 
LCS_GDT     N      65     N      65      3    4   33     3    3    4    4    5    5    9   10   11   14   15   18   24   27   29   32   33   36   37   44 
LCS_GDT     L      66     L      66      3    5   32     3    3    4    4    5    5    7    9   11   14   15   18   24   27   28   30   31   33   34   37 
LCS_GDT     F      67     F      67      3    5   18     3    3    3    4    5    5    7    9   10   12   15   15   16   17   18   20   23   26   29   30 
LCS_GDT     G      68     G      68      3    5   18     3    3    5    5    5    5    8   11   12   14   15   15   16   17   19   20   23   26   26   31 
LCS_GDT     T      69     T      69      3    5   18     3    3    5    5    5    5    8    9   12   14   15   15   16   17   18   20   20   23   25   26 
LCS_GDT     P      70     P      70      3    5   18     3    3    5    5    5    5    7    9   12   14   15   15   16   17   18   20   20   20   22   25 
LCS_GDT     K      71     K      71      3    5   18     3    3    5    5    5    5    8    9   12   14   15   15   16   17   18   20   20   20   22   31 
LCS_GDT     R      72     R      72      3    5   18     3    3    5    5    5    5    8    9   12   14   15   15   16   17   18   21   23   29   33   41 
LCS_GDT     V      73     V      73      3    5   21     0    3    3    5    5    7    8   11   12   14   15   17   18   23   26   30   36   40   42   45 
LCS_GDT     A      74     A      74      3    3   21     0    3    3    5    5    6    8   11   12   14   15   16   18   19   25   26   27   29   33   43 
LCS_GDT     M      75     M      75      3    3   21     0    3    4    5    5    7    7   11   12   14   15   19   22   23   25   26   33   40   42   45 
LCS_GDT     G      76     G      76      4    4   21     2    3    4    9    9   12   15   17   17   18   18   19   22   23   25   26   31   37   42   46 
LCS_GDT     M      77     M      77      4    4   21     3    3    4    6    9   12   15   17   17   18   18   19   22   23   25   26   32   37   42   46 
LCS_GDT     G      78     G      78      4    4   21     3    3    4    6    7    8   10   14   16   17   18   19   22   23   26   30   34   38   43   46 
LCS_GDT     Q      79     Q      79      4    4   21     3    3    4    4    6    7    7   10   12   14   17   19   22   23   26   30   34   40   43   46 
LCS_GDT     E      80     E      80      4   10   21     3    3    4    6    9   12   15   17   17   20   25   28   31   35   38   39   41   41   43   46 
LCS_GDT     D      81     D      81      5   13   21     4    5    9   12   13   13   15   17   17   18   21   27   31   33   38   39   41   41   42   46 
LCS_GDT     V      82     V      82      5   13   21     4    5    9   12   13   13   15   17   17   18   21   23   25   30   34   36   39   41   42   45 
LCS_GDT     S      83     S      83     11   13   21     4    5    9   12   13   13   15   17   17   18   20   21   25   30   32   36   38   40   42   45 
LCS_GDT     A      84     A      84     11   13   21     4   10   10   12   13   13   15   17   17   18   18   20   22   24   29   36   38   40   42   45 
LCS_GDT     L      85     L      85     11   13   21     5   10   10   12   13   13   15   17   17   18   18   20   22   24   28   31   36   40   42   45 
LCS_GDT     R      86     R      86     11   13   21     6   10   10   12   13   13   15   17   17   18   18   20   22   24   28   31   36   40   42   45 
LCS_GDT     E      87     E      87     11   13   21     7   10   10   12   13   13   15   17   17   18   18   20   22   23   29   31   36   40   42   45 
LCS_GDT     V      88     V      88     11   13   21     7   10   10   12   13   13   15   17   17   18   18   20   22   23   25   31   36   40   42   45 
LCS_GDT     G      89     G      89     11   13   21     7   10   10   12   13   13   15   17   17   18   18   20   22   23   25   27   33   35   42   44 
LCS_GDT     K      90     K      90     11   13   21     7   10   10   12   13   13   15   17   17   18   18   20   22   23   25   31   36   40   42   45 
LCS_GDT     L      91     L      91     11   13   21     7   10   10   12   13   13   14   17   17   18   18   20   22   23   25   31   36   40   42   45 
LCS_GDT     L      92     L      92     11   13   21     7   10   10   12   13   13   15   17   17   18   18   20   22   23   25   27   31   36   40   44 
LCS_GDT     A      93     A      93     11   13   21     7   10   10   12   13   13   15   17   17   18   18   20   22   23   25   26   31   34   39   44 
LCS_GDT     D     314     D     314      0    0    9     2    2    3    4    5    5    6    6    6    7    7    8    8    9    9    9    9    9   10   10 
LCS_GDT     A     315     A     315      0    0    9     0    0    3    4    5    5    6    6    6    7    7    8    8    9    9    9    9    9   10   10 
LCS_GDT     I     316     I     316      3    3    9     0    3    3    3    3    4    4    4    5    7    7    7    8    9   18   19   19   20   23   23 
LCS_GDT     Y     317     Y     317      3    3    9     3    3    3    3    3    5    6    8   10   13   16   16   17   18   20   21   23   25   26   28 
LCS_GDT     H     318     H     318      3    3    9     3    3    3    4    5    5    6    6    8   14   16   16   17   18   20   21   23   25   26   28 
LCS_GDT     S     319     S     319      3    3   11     3    3    3    4    5    5    6    7    8   14   14   16   17   18   20   21   23   25   26   28 
LCS_GDT     T     320     T     320      3    5   11     0    3    3    4    5    6    6    7    7    7    9   10   13   16   20   21   23   25   26   28 
LCS_GDT     Y     321     Y     321      4    5   11     0    3    4    4    5    6    6    7    7    7    9   10   11   12   13   20   23   25   26   28 
LCS_GDT     T     322     T     322      4    5   11     3    3    4    4    5    6    6    7    7    7    9   10   11   12   12   12   16   19   25   28 
LCS_GDT     G     323     G     323      4    5   25     3    3    4    4    5    6    6    7    7    7    9   10   20   21   23   23   24   25   26   28 
LCS_GDT     R     324     R     324      4    5   25     3    3    4    4    5    6    6    7    7   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     P     325     P     325      4    5   25     3    3    4    4    5    6    6    7    7    8    9   10   20   21   21   24   24   25   25   28 
LCS_GDT     P     326     P     326      4    5   25     3    3    4    4    5    6    6    7    7    8    9   10   13   16   18   24   24   25   26   28 
LCS_GDT     D     327     D     327      3    5   25     3    3    3    4    5    7   10   16   17   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     E     328     E     328      3    5   25     3    3    3    4    5    8    9   15   17   19   19   20   22   22   23   24   24   25   26   28 
LCS_GDT     P     329     P     329      3    5   25     0    3    3    4    6    8   14   16   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     A     330     A     330      3    4   25     8    9   11   13   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     V     331     V     331      4   17   25     3    3    4    8   15   15   16   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     L     332     L     332      4   17   25     3    8   11   13   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     G     333     G     333     10   17   25     6    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     V     334     V     334     10   17   25     6    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     A     335     A     335     10   17   25     6    9   10   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   25   27 
LCS_GDT     L     336     L     336     12   17   25     6    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     N     337     N     337     12   17   25     6    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     E     338     E     338     12   17   25     6    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     V     339     V     339     12   17   25     5    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     F     340     F     340     12   17   25     8    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     V     341     V     341     12   17   25     8    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     P     342     P     342     12   17   25     8    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     I     343     I     343     12   17   25     8    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     L     344     L     344     12   17   25     8    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     Q     345     Q     345     12   17   25     8    9   12   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     K     346     K     346     12   17   25     8    9   11   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_GDT     Q     347     Q     347     12   17   25     4    9   11   14   15   15   17   18   18   19   19   21   22   22   23   24   24   25   26   28 
LCS_AVERAGE  LCS_A:  12.14  (   5.71    8.97   21.73 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8     13     14     15     18     20     22     24     25     26     28     29     31     35     38     39     41     41     43     46 
GDT PERCENT_CA   6.45  10.48  11.29  12.10  14.52  16.13  17.74  19.35  20.16  20.97  22.58  23.39  25.00  28.23  30.65  31.45  33.06  33.06  34.68  37.10
GDT RMS_LOCAL    0.24   0.58   0.72   1.30   1.60   1.76   2.06   2.33   2.45   3.16   3.42   3.50   4.57   5.19   5.28   5.39   5.62   5.62   6.72   6.97
GDT RMS_ALL_CA  46.46  35.96  36.10  37.03  37.09  37.29  37.26  37.46  37.43  36.94  37.00  37.15  34.42  35.23  34.66  34.79  34.87  34.87  35.32  35.01

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         44.608
LGA    D       8      D       8         43.230
LGA    L       9      L       9         36.408
LGA    R      10      R      10         35.371
LGA    D      11      D      11         40.861
LGA    F      12      F      12         38.379
LGA    L      13      L      13         32.067
LGA    T      14      T      14         35.135
LGA    L      15      L      15         38.604
LGA    L      16      L      16         33.427
LGA    E      17      E      17         31.655
LGA    Q      18      Q      18         30.421
LGA    Q      19      Q      19         27.842
LGA    G      20      G      20         23.669
LGA    E      21      E      21         21.420
LGA    L      22      L      22         19.446
LGA    K      23      K      23         14.945
LGA    R      24      R      24         16.171
LGA    I      25      I      25         14.243
LGA    T      26      T      26         17.625
LGA    L      27      L      27         15.434
LGA    P      28      P      28         12.724
LGA    V      29      V      29         12.306
LGA    D      30      D      30         11.542
LGA    P      31      P      31          7.830
LGA    H      32      H      32          3.562
LGA    L      33      L      33          3.912
LGA    I      35      I      35          3.841
LGA    T      36      T      36          2.048
LGA    E      37      E      37          0.547
LGA    I      38      I      38          2.024
LGA    A      39      A      39          1.789
LGA    D      40      D      40          0.360
LGA    R      41      R      41          1.540
LGA    T      42      T      42          0.622
LGA    L      43      L      43          0.982
LGA    R      44      R      44          1.634
LGA    A      45      A      45          1.601
LGA    G      46      G      46          1.298
LGA    G      47      G      47          1.110
LGA    P      48      P      48          2.388
LGA    A      49      A      49          2.410
LGA    L      50      L      50          2.613
LGA    L      51      L      51          1.203
LGA    F      52      F      52          4.269
LGA    E      53      E      53          3.751
LGA    N      54      N      54          1.796
LGA    P      55      P      55          3.165
LGA    K      56      K      56          3.887
LGA    G      57      G      57          3.538
LGA    Y      58      Y      58          9.031
LGA    S      59      S      59         10.299
LGA    P      61      P      61          7.242
LGA    V      62      V      62          8.403
LGA    L      63      L      63         13.622
LGA    C      64      C      64         13.057
LGA    N      65      N      65         12.796
LGA    L      66      L      66         16.832
LGA    F      67      F      67         22.615
LGA    G      68      G      68         22.791
LGA    T      69      T      69         28.460
LGA    P      70      P      70         32.804
LGA    K      71      K      71         34.157
LGA    R      72      R      72         28.699
LGA    V      73      V      73         27.944
LGA    A      74      A      74         27.752
LGA    M      75      M      75         26.832
LGA    G      76      G      76         25.119
LGA    M      77      M      77         30.762
LGA    G      78      G      78         30.395
LGA    Q      79      Q      79         30.201
LGA    E      80      E      80         29.570
LGA    D      81      D      81         32.736
LGA    V      82      V      82         33.617
LGA    S      83      S      83         40.642
LGA    A      84      A      84         42.925
LGA    L      85      L      85         41.439
LGA    R      86      R      86         46.555
LGA    E      87      E      87         51.207
LGA    V      88      V      88         49.971
LGA    G      89      G      89         50.666
LGA    K      90      K      90         56.582
LGA    L      91      L      91         59.008
LGA    L      92      L      92         57.501
LGA    A      93      A      93         59.848
LGA    D     314      D     314         72.934
LGA    A     315      A     315         67.848
LGA    I     316      I     316         59.106
LGA    Y     317      Y     317         59.363
LGA    H     318      H     318         57.385
LGA    S     319      S     319         50.862
LGA    T     320      T     320         51.234
LGA    Y     321      Y     321         49.887
LGA    T     322      T     322         45.039
LGA    G     323      G     323         42.027
LGA    R     324      R     324         38.816
LGA    P     325      P     325         44.328
LGA    P     326      P     326         46.778
LGA    D     327      D     327         45.797
LGA    E     328      E     328         47.101
LGA    P     329      P     329         47.154
LGA    A     330      A     330         42.943
LGA    V     331      V     331         45.210
LGA    L     332      L     332         51.043
LGA    G     333      G     333         49.260
LGA    V     334      V     334         45.737
LGA    A     335      A     335         51.498
LGA    L     336      L     336         55.387
LGA    N     337      N     337         51.323
LGA    E     338      E     338         52.009
LGA    V     339      V     339         58.861
LGA    F     340      F     340         59.136
LGA    V     341      V     341         56.502
LGA    P     342      P     342         61.114
LGA    I     343      I     343         65.679
LGA    L     344      L     344         63.385
LGA    Q     345      Q     345         63.371
LGA    K     346      K     346         69.609
LGA    Q     347      Q     347         71.558

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  119  124    4.0     24    2.33    18.347    15.951     0.989

LGA_LOCAL      RMSD =  2.326  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 37.357  Number of atoms =  119 
Std_ALL_ATOMS  RMSD = 23.098  (standard rmsd on all 119 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.383110 * X  +  -0.863375 * Y  +   0.328344 * Z  +  87.387054
  Y_new =   0.831463 * X  +   0.477171 * Y  +   0.284566 * Z  + -66.208275
  Z_new =  -0.402364 * X  +   0.163986 * Y  +   0.900673 * Z  + 172.040802 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.180098   -2.961495  [ DEG:    10.3188   -169.6812 ]
  Theta =   0.414097    2.727495  [ DEG:    23.7260    156.2740 ]
  Phi   =   1.139025   -2.002568  [ DEG:    65.2613   -114.7387 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS677_2-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS677_2-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  119  124   4.0   24   2.33  15.951    23.10
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS677_2-D1
PFRMAT TS
TARGET T0356
MODEL  2
PARENT 1T3T_A
ATOM    482  CA  ASN     7      45.164  65.198 108.022  1.00 53.00
ATOM    483  CA  ASP     8      44.271  67.594 110.837  1.00 37.00
ATOM    484  CA  LEU     9      46.005  70.367 108.885  1.00 49.00
ATOM    485  CA  ARG    10      44.190  69.429 105.681  1.00 76.00
ATOM    486  CA  ASP    11      40.924  69.418 107.669  1.00 65.00
ATOM    487  CA  PHE    12      41.602  72.903 109.071  1.00 70.00
ATOM    488  CA  LEU    13      42.204  74.005 105.479  1.00 97.00
ATOM    489  CA  THR    14      39.017  72.676 103.831  1.00 99.00
ATOM    490  CA  LEU    15      37.096  73.805 106.926  1.00 79.00
ATOM    491  CA  LEU    16      38.018  77.393 106.039  1.00 99.00
ATOM    492  CA  GLU    17      35.799  76.995 102.965  1.00 99.00
ATOM    493  CA  GLN    18      36.476  79.775 100.464  1.00 68.00
ATOM    494  CA  GLN    19      39.441  80.789 102.632  1.00 99.00
ATOM    495  CA  GLY    20      41.031  77.335 102.161  1.00 98.00
ATOM    496  CA  GLU    21      44.761  78.226 101.655  1.00 88.00
ATOM    497  CA  LEU    22      45.352  75.071  99.599  1.00 73.00
ATOM    498  CA  LYS    23      45.617  75.938  95.903  1.00 99.00
ATOM    499  CA  ARG    24      46.802  72.479  94.919  1.00 63.00
ATOM    500  CA  ILE    25      47.681  69.300  96.815  1.00 98.00
ATOM    501  CA  THR    26      49.033  65.899  95.841  1.00 99.00
ATOM    502  CA  LEU    27      50.230  62.856  97.757  1.00 99.00
ATOM    503  CA  PRO    28      53.880  61.808  97.761  1.00 99.00
ATOM    504  CA  VAL    29      54.249  58.178  96.734  1.00 99.00
ATOM    505  CA  ASP    30      56.283  56.333  94.101  1.00 80.00
ATOM    506  CA  PRO    31      59.369  58.271  93.034  1.00 84.00
ATOM    507  CA  HIS    32      58.972  60.467  96.092  1.00 52.00
ATOM    508  CA  LEU    33      59.459  64.182  95.578  1.00 55.00
ATOM    509  CA  ILE    35      61.049  63.517  92.159  1.00 91.00
ATOM    510  CA  THR    36      57.626  62.522  90.861  1.00 99.00
ATOM    511  CA  GLU    37      55.281  64.469  93.152  1.00 99.00
ATOM    512  CA  ILE    38      56.695  67.978  92.707  1.00 99.00
ATOM    513  CA  ALA    39      57.228  67.915  88.923  1.00 99.00
ATOM    514  CA  ASP    40      53.697  66.516  88.651  1.00 71.00
ATOM    515  CA  ARG    41      52.270  69.249  90.895  1.00 50.00
ATOM    516  CA  THR    42      53.778  72.173  88.957  1.00 48.00
ATOM    517  CA  LEU    43      53.147  70.481  85.598  1.00 60.00
ATOM    518  CA  ARG    44      49.439  70.011  86.348  1.00 52.00
ATOM    519  CA  ALA    45      49.303  73.731  87.090  1.00 41.00
ATOM    520  CA  GLY    46      51.105  74.639  83.871  1.00 51.00
ATOM    521  CA  GLY    47      54.029  76.032  85.860  1.00 53.00
ATOM    522  CA  PRO    48      57.687  75.300  86.474  1.00 71.00
ATOM    523  CA  ALA    49      59.514  75.274  89.788  1.00 99.00
ATOM    524  CA  LEU    50      62.722  76.273  91.537  1.00 99.00
ATOM    525  CA  LEU    51      63.567  74.250  94.630  1.00 99.00
ATOM    527  CA  PHE    52      67.457  70.853  98.431  1.00 99.00
ATOM    528  CA  GLU    53      68.479  71.991 101.922  1.00 73.00
ATOM    529  CA  ASN    54      64.990  73.265 102.740  1.00 50.00
ATOM    530  CA  PRO    55      63.561  69.720 102.674  1.00 42.00
ATOM    531  CA  LYS    56      63.243  68.178 106.163  1.00 68.00
ATOM    532  CA  GLY    57      65.652  65.264 106.615  1.00 70.00
ATOM    533  CA  TYR    58      66.323  62.706 109.350  1.00 70.00
ATOM    534  CA  SER    59      69.591  61.455 107.835  1.00 95.00
ATOM    539  CA  PRO    61      70.705  64.629  96.480  1.00 99.00
ATOM    540  CA  VAL    62      69.343  61.571  94.634  1.00 84.00
ATOM    541  CA  LEU    63      68.288  59.928  97.905  1.00 96.00
ATOM    542  CA  CYS    64      66.730  63.104  99.328  1.00 99.00
ATOM    543  CA  ASN    65      64.789  63.787  96.135  1.00 99.00
ATOM    544  CA  LEU    66      63.823  60.217  95.175  1.00 81.00
ATOM    545  CA  PHE    67      63.370  58.330  98.476  1.00 99.00
ATOM    546  CA  GLY    68      59.899  56.944  99.155  1.00 91.00
ATOM    547  CA  THR    69      59.546  58.037 102.782  1.00 75.00
ATOM    548  CA  PRO    70      55.946  57.986 103.947  1.00 44.00
ATOM    549  CA  LYS    71      53.376  60.421 105.331  1.00 53.00
ATOM    550  CA  ARG    72      54.265  63.281 102.969  1.00 45.00
ATOM    551  CA  VAL    73      52.138  65.631 100.879  1.00 33.00
ATOM    552  CA  ALA    74      53.148  68.380  98.455  1.00 21.00
ATOM    553  CA  MET    75      51.055  71.506  98.071  1.00 17.00
ATOM    554  CA  GLY    76      50.926  75.025  96.675  1.00  8.00
ATOM    555  CA  MET    77      50.005  78.011  98.849  1.00 18.00
ATOM    556  CA  GLY    78      49.840  81.724  97.999  1.00 38.00
ATOM    557  CA  GLN    79      52.695  83.642  99.649  1.00 49.00
ATOM    558  CA  GLU    80      50.296  85.861 101.627  1.00 82.00
ATOM    559  CA  ASP    81      48.650  82.732 103.067  1.00 98.00
ATOM    560  CA  VAL    82      51.878  81.325 104.515  1.00 94.00
ATOM    561  CA  SER    83      51.410  82.885 107.996  1.00 74.00
ATOM    562  CA  ALA    84      47.942  81.312 108.255  1.00 79.00
ATOM    563  CA  LEU    85      49.299  77.954 107.066  1.00 59.00
ATOM    564  CA  ARG    86      52.136  78.143 109.621  1.00 46.00
ATOM    565  CA  GLU    87      49.591  78.792 112.387  1.00 26.00
ATOM    566  CA  VAL    88      47.527  75.763 111.362  1.00 38.00
ATOM    567  CA  GLY    89      50.531  73.419 111.218  1.00 57.00
ATOM    568  CA  LYS    90      52.072  74.580 114.517  1.00 76.00
ATOM    569  CA  LEU    91      48.784  74.024 116.368  1.00 86.00
ATOM    570  CA  LEU    92      48.564  70.449 115.047  1.00 99.00
ATOM    571  CA  ALA    93      52.313  69.832 115.472  1.00 99.00
ATOM    836  CA  ASP   314      24.843  25.286  87.806  1.00 69.00
ATOM    837  CA  ALA   315      28.474  25.652  86.671  1.00 61.00
ATOM    842  CA  ILE   316      35.470  26.513  95.954  1.00 55.00
ATOM    843  CA  TYR   317      34.245  22.932  95.501  1.00 55.00
ATOM    844  CA  HIS   318      36.649  22.306  92.616  1.00 64.00
ATOM    845  CA  SER   319      39.620  23.943  94.397  1.00 67.00
ATOM    846  CA  THR   320      38.972  21.926  97.550  1.00 88.00
ATOM    847  CA  TYR   321      39.387  18.748  95.472  1.00 77.00
ATOM    848  CA  THR   322      42.503  20.048  93.688  1.00 79.00
ATOM    849  CA  GLY   323      40.705  20.573  90.389  1.00 67.00
ATOM    850  CA  ARG   324      39.762  23.407  88.060  1.00 50.00
ATOM    851  CA  PRO   325      36.703  21.900  86.414  1.00 47.00
ATOM    852  CA  PRO   326      35.086  22.420  83.016  1.00 99.00
ATOM    853  CA  ASP   327      32.979  25.586  82.697  1.00 99.00
ATOM    854  CA  GLU   328      32.746  28.401  85.273  1.00 99.00
ATOM    855  CA  PRO   329      29.877  30.709  86.172  1.00 99.00
ATOM    856  CA  ALA   330      29.274  33.901  84.182  1.00 99.00
ATOM    857  CA  VAL   331      26.705  36.682  83.829  1.00 67.00
ATOM    858  CA  LEU   332      24.021  34.673  82.010  1.00 94.00
ATOM    859  CA  GLY   333      21.605  37.512  81.235  1.00 86.00
ATOM    860  CA  VAL   334      22.537  41.197  81.543  1.00 78.00
ATOM    861  CA  ALA   335      18.902  42.331  81.587  1.00 89.00
ATOM    862  CA  LEU   336      18.082  39.921  84.436  1.00 99.00
ATOM    863  CA  ASN   337      21.101  41.056  86.480  1.00 93.00
ATOM    864  CA  GLU   338      19.876  44.619  86.033  1.00 68.00
ATOM    865  CA  VAL   339      16.312  43.491  86.773  1.00 75.00
ATOM    866  CA  PHE   340      17.531  41.681  89.892  1.00 61.00
ATOM    867  CA  VAL   341      19.201  44.823  91.253  1.00 51.00
ATOM    868  CA  PRO   342      16.092  46.903  90.510  1.00 28.00
ATOM    869  CA  ILE   343      13.791  44.330  92.115  1.00 54.00
ATOM    870  CA  LEU   344      15.943  44.224  95.240  1.00 42.00
ATOM    871  CA  GLN   345      15.892  48.026  95.456  1.00 68.00
ATOM    872  CA  LYS   346      12.097  47.946  95.290  1.00 63.00
ATOM    873  CA  GLN   347      11.879  45.304  98.030  1.00 76.00
TER
END
