
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0356TS677_1-D1
# Molecule2: number of CA atoms  124 (  963),  selected  112 , name T0356_D1.pdb
# PARAMETERS: T0356TS677_1-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        20 - 56          4.92    31.95
  LCS_AVERAGE:     18.81

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        77 - 96          1.73    35.24
  LCS_AVERAGE:      7.89

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13        32 - 44          0.78    37.27
  LONGEST_CONTINUOUS_SEGMENT:    13        82 - 94          0.90    34.74
  LCS_AVERAGE:      6.03

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     L       9     L       9      9   10   23     8    9   12   14   15   15   15   17   18   19   21   23   25   27   29   30   30   32   35   36 
LCS_GDT     R      10     R      10      9   10   23     8    9    9   11   12   15   15   17   18   19   21   23   25   27   29   30   30   32   35   36 
LCS_GDT     D      11     D      11      9   10   23     8    9    9    9    9   10   15   17   18   19   21   22   24   27   29   30   31   33   36   37 
LCS_GDT     F      12     F      12      9   10   23     8    9    9    9    9   11   15   17   18   19   21   23   25   27   29   30   31   33   36   37 
LCS_GDT     L      13     L      13      9   10   23     8    9    9    9    9   10   15   17   18   19   21   23   25   27   29   30   31   36   39   41 
LCS_GDT     T      14     T      14      9   10   23     8    9    9    9    9   11   15   17   18   19   21   23   25   27   29   30   33   36   39   41 
LCS_GDT     L      15     L      15      9   10   23     8    9    9    9    9   11   14   17   18   19   21   23   25   27   29   31   33   36   39   41 
LCS_GDT     L      16     L      16      9   10   23     8    9    9    9    9   10   12   13   15   17   19   23   25   27   29   32   35   39   40   41 
LCS_GDT     E      17     E      17      9   10   23     7    9    9    9    9   10   10   13   15   17   19   25   28   30   33   35   38   39   40   41 
LCS_GDT     Q      18     Q      18      3   10   23     3    4    6    6    9   10   15   17   18   20   21   24   26   31   33   35   38   39   40   41 
LCS_GDT     Q      19     Q      19      4    9   32     3    5    5    8    9   10   13   15   18   20   22   25   27   32   34   37   38   39   40   41 
LCS_GDT     G      20     G      20      4    9   33     3    4    6    7    9   10   13   15   18   21   23   28   30   32   35   37   38   39   40   41 
LCS_GDT     E      21     E      21      8   10   33     4    6    9    9   12   14   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     L      22     L      22      8   10   33     4    7    9    9   12   14   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     K      23     K      23      8   10   33     4    7    9    9   12   14   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     R      24     R      24      8   10   33     4    7    9    9   12   14   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     I      25     I      25      8   10   33     4    7    9    9   12   14   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     T      26     T      26      8   10   33     3    7    9    9   12   14   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     L      27     L      27      8   10   33     3    7    9    9   12   14   18   18   19   22   25   27   30   33   35   37   38   39   40   42 
LCS_GDT     P      28     P      28      8   10   33     3    5    9    9   11   14   18   18   19   22   25   27   30   33   35   37   38   39   40   42 
LCS_GDT     V      29     V      29      5   10   33     3    4    4    8    9   10   13   15   19   20   23   26   30   33   35   37   38   39   40   42 
LCS_GDT     D      30     D      30      5   10   33     3    4    5    7   10   14   16   17   19   21   24   28   30   33   35   37   38   39   40   42 
LCS_GDT     P      31     P      31      5   14   33     4    5    5    7    9   12   14   15   17   19   23   28   30   32   33   33   35   38   40   41 
LCS_GDT     H      32     H      32     13   14   33     3    7   13   13   13   13   14   15   15   20   23   28   30   32   33   34   37   38   40   41 
LCS_GDT     L      33     L      33     13   14   33     3   11   13   13   13   13   14   15   17   21   24   28   30   33   35   37   38   39   40   42 
LCS_GDT     E      34     E      34     13   14   33    10   11   13   13   13   14   18   18   19   21   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     I      35     I      35     13   14   33    10   11   13   13   13   14   16   17   19   21   24   28   30   33   35   37   38   39   40   42 
LCS_GDT     T      36     T      36     13   14   33    10   11   13   13   13   13   14   15   17   20   23   28   30   33   35   37   38   39   40   42 
LCS_GDT     E      37     E      37     13   14   33    10   11   13   13   13   13   14   15   17   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     I      38     I      38     13   14   33    10   11   13   13   13   14   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     A      39     A      39     13   14   33    10   11   13   13   13   14   18   18   19   21   24   28   30   33   35   37   38   39   40   42 
LCS_GDT     D      40     D      40     13   14   33    10   11   13   13   13   13   14   15   15   21   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     R      41     R      41     13   14   33    10   11   13   13   13   13   14   17   18   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     T      42     T      42     13   14   33    10   11   13   13   13   13   16   17   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     L      43     L      43     13   14   33     9   11   13   13   13   14   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     R      44     R      44     13   14   33    10   11   13   13   13   13   14   15   15   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     A      49     A      49      5    5   33     4    6    6    9   12   14   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     L      50     L      50      5    5   33     4    6    6    7   10   13   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     L      51     L      51      5    5   33     4    6    6    9   12   14   18   18   19   21   24   28   30   33   35   37   38   39   40   42 
LCS_GDT     F      52     F      52      5    5   33     4    6    6    7   10   13   18   18   19   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     E      53     E      53      5    5   33     4    6    6    9   12   14   18   18   19   21   24   28   30   33   35   37   38   39   40   42 
LCS_GDT     N      54     N      54      3    4   33     2    7    9    9   11   14   18   18   19   21   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     P      55     P      55      3    5   33     3    4    4    7    7    9   10   13   17   22   25   28   30   33   35   37   38   39   40   42 
LCS_GDT     K      56     K      56      3    6   33     3    4    4    7    8   12   13   15   18   22   25   26   29   33   35   37   38   39   40   42 
LCS_GDT     G      57     G      57      4    6   23     3    3    4    7    7   10   13   15   18   22   25   26   29   33   35   37   38   39   40   42 
LCS_GDT     Y      58     Y      58      4    6   22     3    3    4    6    8   12   13   15   18   22   25   26   29   33   35   37   38   39   40   42 
LCS_GDT     S      59     S      59      4    6   19     3    3    4    6    8   12   13   15   18   22   25   26   29   33   35   37   38   39   40   42 
LCS_GDT     M      60     M      60      4    6   17     3    3    4    6    8    8   10   14   18   20   24   26   29   33   34   37   38   39   40   42 
LCS_GDT     P      61     P      61      4    6   17     3    4    4    6    6    6    9   12   15   17   21   24   29   33   35   37   38   39   40   42 
LCS_GDT     V      62     V      62      3    3   17     3    4    4    5    6    8   11   14   18   20   21   25   29   33   34   37   38   39   40   42 
LCS_GDT     L      63     L      63      4    4   17     3    4    4    4    5    7   10   13   14   18   19   22   23   25   29   33   36   37   39   42 
LCS_GDT     C      64     C      64      4    6   17     3    3    4    5    7    8   10   13   14   18   19   22   23   25   27   31   33   36   38   41 
LCS_GDT     N      65     N      65      4    7   17     3    4    4    5    7    8   10   10   12   16   18   21   22   25   27   31   33   36   38   42 
LCS_GDT     L      66     L      66      4    7   17     3    4    4    5    7    8   10   10   12   16   18   19   22   25   28   33   36   37   39   42 
LCS_GDT     F      67     F      67      5    7   17     3    4    5    5    7    8   10   10   11   16   18   19   22   24   26   31   33   36   38   42 
LCS_GDT     G      68     G      68      5    7   17     3    4    5    5    7    8   10   10   12   16   18   21   23   26   29   31   33   36   36   41 
LCS_GDT     T      69     T      69      5    7   17     3    4    5    6    8   10   15   17   18   19   21   23   25   27   29   31   33   36   38   42 
LCS_GDT     P      70     P      70      5    7   17     3    5    5    5    8   11   15   17   18   19   19   23   25   27   29   30   30   32   36   40 
LCS_GDT     K      71     K      71      5    7   17     3    4    5    5    7   10   15   17   18   19   21   23   25   27   29   30   30   32   35   41 
LCS_GDT     R      72     R      72      4    4   17     4    4    6    6    8   11   15   17   18   19   21   23   25   27   29   30   33   36   38   42 
LCS_GDT     V      73     V      73      4    4   20     3    4    4    5    8   11   15   17   18   19   21   23   25   27   29   30   30   32   35   36 
LCS_GDT     A      74     A      74      4    4   20     3    4    4    4    6    8   10   17   18   19   21   23   25   27   29   30   30   32   35   36 
LCS_GDT     M      75     M      75      3    3   20     3    4    4    4    6   13   15   16   17   18   21   23   25   27   29   30   30   32   35   36 
LCS_GDT     G      76     G      76      3    3   20     3    3    3    3    5    5    7    9   16   18   18   23   25   27   29   30   30   32   35   36 
LCS_GDT     M      77     M      77      3   16   20     0    3    3    3    5   13   13   16   16   17   19   21   24   26   29   30   30   32   35   36 
LCS_GDT     V      82     V      82     13   16   20     4   11   13   14   15   15   15   16   17   18   18   20   20   21   22   23   25   30   31   34 
LCS_GDT     S      83     S      83     13   16   20     4    7   11   14   15   15   15   16   17   18   18   20   20   23   25   26   28   30   31   34 
LCS_GDT     A      84     A      84     13   16   20     4   11   13   14   15   15   15   16   17   18   19   21   23   26   27   27   28   30   33   35 
LCS_GDT     L      85     L      85     13   16   20     4   11   13   14   15   15   15   16   17   18   21   23   25   27   29   30   30   32   35   36 
LCS_GDT     R      86     R      86     13   16   20     7   11   13   14   15   15   15   16   17   18   21   23   25   27   29   30   30   32   35   36 
LCS_GDT     E      87     E      87     13   16   20     7   11   13   14   15   15   15   16   17   18   19   22   25   27   29   30   30   32   35   36 
LCS_GDT     V      88     V      88     13   16   20     7   11   13   14   15   15   15   16   17   18   19   23   25   27   29   30   30   32   35   36 
LCS_GDT     G      89     G      89     13   16   20     7   11   13   14   15   15   15   17   18   19   19   21   22   25   29   30   30   32   35   36 
LCS_GDT     K      90     K      90     13   16   20     7   11   13   14   15   15   15   16   17   18   19   21   22   24   27   30   30   32   35   36 
LCS_GDT     L      91     L      91     13   16   20     7   11   13   14   15   15   15   16   17   18   18   20   20   21   22   23   27   30   32   35 
LCS_GDT     L      92     L      92     13   16   20     7   11   13   14   15   15   15   16   17   18   18   20   20   21   22   23   23   27   34   36 
LCS_GDT     A      93     A      93     13   16   20     7   11   13   14   15   15   15   16   17   18   18   20   20   21   22   23   23   30   34   36 
LCS_GDT     F      94     F      94     13   16   20     4   11   13   14   15   15   15   16   17   18   18   20   20   21   22   23   23   24   25   26 
LCS_GDT     L      95     L      95     12   16   20     4   11   13   13   15   15   15   16   17   18   18   20   20   21   22   23   23   24   25   26 
LCS_GDT     K      96     K      96     12   16   20     4    5   11   12   15   15   15   16   16   17   18   19   20   21   22   23   23   24   25   26 
LCS_GDT     D     314     D     314      3    4   17     3    3    4    4    5    6    6    6    8   10   12   13   16   16   18   19   20   20   21   21 
LCS_GDT     A     315     A     315      3    4   13     3    3    4    4    5    6    6    6    7   10   12   13   16   16   18   19   20   20   21   21 
LCS_GDT     I     316     I     316      3    4   13     3    3    4    4    5    6    6    6    8   10   12   13   16   16   18   19   20   20   21   21 
LCS_GDT     Y     317     Y     317      3    4   13     3    3    4    4    5    6    6    6    8   10   12   13   16   16   18   19   20   20   21   21 
LCS_GDT     T     320     T     320      4    6   15     0    4    4    5    5    6    6    7    7   10   12   13   16   16   18   19   20   20   21   21 
LCS_GDT     Y     321     Y     321      4    6   15     3    4    4    5    5    6    6    7    9   11   12   13   16   16   18   19   20   20   21   22 
LCS_GDT     T     322     T     322      4    6   15     3    4    4    5    5    6    7    8   10   12   13   13   14   15   17   19   21   21   22   22 
LCS_GDT     G     323     G     323      5    7   15     3    4    5    6    6    7    8   10   11   13   13   15   19   19   21   23   24   26   28   29 
LCS_GDT     R     324     R     324      5    7   15     3    4    5    6    6    7    9   10   12   13   15   15   19   19   21   23   24   26   28   29 
LCS_GDT     P     325     P     325      5    7   15     3    4    5    6    6    7    9   10   12   13   15   15   17   18   21   23   24   26   28   28 
LCS_GDT     P     326     P     326      5    7   15     2    4    5    6    6    7    8   10   11   12   14   15   16   18   20   23   24   26   28   28 
LCS_GDT     D     327     D     327      5    7   15     2    4    5    6    6    7    8   10   11   12   14   15   17   18   20   21   22   23   28   28 
LCS_GDT     E     328     E     328      3    7   20     3    3    3    4    6    7    7   10   11   12   13   13   16   16   18   20   22   22   25   26 
LCS_GDT     P     329     P     329      3    7   20     3    4    5    6    6    7    8   10   11   12   14   14   16   17   19   20   22   22   25   26 
LCS_GDT     A     330     A     330      3    4   20     3    4    4    4    9   11   12   13   14   14   15   16   18   18   19   20   22   22   25   26 
LCS_GDT     V     331     V     331      3    5   20     3    4    4    4    5   11   13   13   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     L     332     L     332      3    5   20     3    3    4    4    5    5    6   10   11   12   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     G     333     G     333      3    5   20     3    4    4    4    5    7    8   10   11   15   17   17   18   18   18   19   20   20   21   23 
LCS_GDT     V     334     V     334      3    5   20     3    4    4    4    5    6   14   14   15   15   17   17   18   18   18   20   22   22   23   23 
LCS_GDT     A     335     A     335      3   13   20     3    4    4    4   10   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     L     336     L     336      3   13   20     3    3    7   10   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     N     337     N     337      9   13   20     5    6    9   11   11   11   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     E     338     E     338     10   13   20     5    6   10   11   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     V     339     V     339     10   13   20     5    6   10   11   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     F     340     F     340     10   13   20     5    8   10   11   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     V     341     V     341     10   13   20     5    8   10   11   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     P     342     P     342     10   13   20     5    8   10   11   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     I     343     I     343     10   13   20     5    8   10   11   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     L     344     L     344     10   13   20     5    8   10   11   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     Q     345     Q     345     10   13   20     5    8   10   11   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     K     346     K     346     10   13   20     5    8   10   11   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_GDT     Q     347     Q     347     10   13   20     5    8   10   11   11   12   14   14   15   15   17   17   18   18   19   20   22   22   23   23 
LCS_AVERAGE  LCS_A:  10.91  (   6.03    7.89   18.81 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     11     13     14     15     15     18     18     19     22     25     28     30     33     35     37     38     39     40     42 
GDT PERCENT_CA   8.06   8.87  10.48  11.29  12.10  12.10  14.52  14.52  15.32  17.74  20.16  22.58  24.19  26.61  28.23  29.84  30.65  31.45  32.26  33.87
GDT RMS_LOCAL    0.31   0.36   0.78   1.05   1.19   1.19   2.33   2.33   2.51   4.25   4.45   4.53   4.57   5.12   5.30   5.56   5.67   5.80   5.96   6.88
GDT RMS_ALL_CA  37.25  37.34  37.27  35.94  36.03  36.03  33.44  33.44  33.15  30.46  30.59  31.36  32.36  30.84  30.55  30.06  30.03  30.04  30.08  29.29

#      Molecule1      Molecule2       DISTANCE
LGA    L       9      L       9         25.458
LGA    R      10      R      10         23.848
LGA    D      11      D      11         26.888
LGA    F      12      F      12         23.685
LGA    L      13      L      13         17.440
LGA    T      14      T      14         19.392
LGA    L      15      L      15         20.541
LGA    L      16      L      16         15.324
LGA    E      17      E      17         12.484
LGA    Q      18      Q      18         11.390
LGA    Q      19      Q      19          9.790
LGA    G      20      G      20          8.215
LGA    E      21      E      21          1.259
LGA    L      22      L      22          0.810
LGA    K      23      K      23          0.857
LGA    R      24      R      24          1.155
LGA    I      25      I      25          1.462
LGA    T      26      T      26          1.562
LGA    L      27      L      27          2.593
LGA    P      28      P      28          3.613
LGA    V      29      V      29          5.486
LGA    D      30      D      30          7.670
LGA    P      31      P      31         11.309
LGA    H      32      H      32         12.175
LGA    L      33      L      33          9.325
LGA    E      34      E      34          2.986
LGA    I      35      I      35          6.722
LGA    T      36      T      36          8.732
LGA    E      37      E      37          6.128
LGA    I      38      I      38          2.282
LGA    A      39      A      39          3.365
LGA    D      40      D      40          6.397
LGA    R      41      R      41          7.132
LGA    T      42      T      42          4.273
LGA    L      43      L      43          1.962
LGA    R      44      R      44          8.511
LGA    A      49      A      49          2.008
LGA    L      50      L      50          3.130
LGA    L      51      L      51          2.326
LGA    F      52      F      52          3.193
LGA    E      53      E      53          2.361
LGA    N      54      N      54          2.973
LGA    P      55      P      55          9.640
LGA    K      56      K      56         10.411
LGA    G      57      G      57         12.244
LGA    Y      58      Y      58         14.723
LGA    S      59      S      59         14.494
LGA    M      60      M      60         15.588
LGA    P      61      P      61         11.705
LGA    V      62      V      62         14.378
LGA    L      63      L      63         17.220
LGA    C      64      C      64         19.310
LGA    N      65      N      65         18.284
LGA    L      66      L      66         16.099
LGA    F      67      F      67         20.884
LGA    G      68      G      68         19.809
LGA    T      69      T      69         17.667
LGA    P      70      P      70         20.343
LGA    K      71      K      71         17.356
LGA    R      72      R      72         15.233
LGA    V      73      V      73         20.732
LGA    A      74      A      74         25.052
LGA    M      75      M      75         25.258
LGA    G      76      G      76         28.122
LGA    M      77      M      77         35.081
LGA    V      82      V      82         38.959
LGA    S      83      S      83         44.251
LGA    A      84      A      84         41.604
LGA    L      85      L      85         41.219
LGA    R      86      R      86         47.232
LGA    E      87      E      87         45.461
LGA    V      88      V      88         40.984
LGA    G      89      G      89         45.706
LGA    K      90      K      90         48.922
LGA    L      91      L      91         44.100
LGA    L      92      L      92         44.004
LGA    A      93      A      93         49.689
LGA    F      94      F      94         47.846
LGA    L      95      L      95         43.512
LGA    K      96      K      96         47.192
LGA    D     314      D     314         34.835
LGA    A     315      A     315         28.878
LGA    I     316      I     316         27.914
LGA    Y     317      Y     317         22.699
LGA    T     320      T     320         27.929
LGA    Y     321      Y     321         27.757
LGA    T     322      T     322         33.621
LGA    G     323      G     323         36.340
LGA    R     324      R     324         39.688
LGA    P     325      P     325         42.539
LGA    P     326      P     326         43.212
LGA    D     327      D     327         41.127
LGA    E     328      E     328         40.856
LGA    P     329      P     329         44.835
LGA    A     330      A     330         50.610
LGA    V     331      V     331         54.414
LGA    L     332      L     332         54.050
LGA    G     333      G     333         54.453
LGA    V     334      V     334         55.951
LGA    A     335      A     335         51.001
LGA    L     336      L     336         50.665
LGA    N     337      N     337         51.188
LGA    E     338      E     338         53.697
LGA    V     339      V     339         51.610
LGA    F     340      F     340         55.456
LGA    V     341      V     341         61.655
LGA    P     342      P     342         61.704
LGA    I     343      I     343         60.751
LGA    L     344      L     344         65.934
LGA    Q     345      Q     345         70.004
LGA    K     346      K     346         69.166
LGA    Q     347      Q     347         71.456

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  112  124    4.0     18    2.33    16.129    13.889     0.739

LGA_LOCAL      RMSD =  2.335  Number of atoms =   18  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 33.152  Number of atoms =  112 
Std_ALL_ATOMS  RMSD = 20.497  (standard rmsd on all 112 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.446453 * X  +   0.864492 * Y  +  -0.230940 * Z  +  48.338890
  Y_new =  -0.737193 * X  +   0.501636 * Y  +   0.452666 * Z  +  57.448837
  Z_new =   0.507174 * X  +  -0.031847 * Y  +   0.861255 * Z  +  80.953957 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.036960    3.104632  [ DEG:    -2.1177    177.8823 ]
  Theta =  -0.531903   -2.609690  [ DEG:   -30.4758   -149.5242 ]
  Phi   =  -1.026261    2.115332  [ DEG:   -58.8004    121.1996 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS677_1-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS677_1-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  112  124   4.0   18   2.33  13.889    20.50
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS677_1-D1
PFRMAT TS
TARGET T0356
MODEL  1
PARENT 2D1Q_A
ATOM     65  CA  LEU     9      48.940  73.016  92.952  1.00 54.00
ATOM     66  CA  ARG    10      50.269  72.864  89.378  1.00 35.00
ATOM     67  CA  ASP    11      47.126  74.646  88.111  1.00 11.00
ATOM     68  CA  PHE    12      47.265  77.193  90.947  1.00 31.00
ATOM     69  CA  LEU    13      50.855  78.193  90.134  1.00 58.00
ATOM     70  CA  THR    14      49.957  78.751  86.484  1.00 82.00
ATOM     71  CA  LEU    15      46.950  80.861  87.445  1.00 99.00
ATOM     72  CA  LEU    16      49.231  82.750  89.838  1.00 99.00
ATOM     73  CA  GLU    17      51.304  83.735  86.800  1.00 99.00
ATOM     75  CA  GLN    18      55.557  80.582  83.330  1.00 76.00
ATOM     76  CA  GLN    19      57.874  77.818  82.152  1.00 72.00
ATOM     77  CA  GLY    20      61.352  78.385  83.676  1.00 71.00
ATOM     78  CA  GLU    21      59.994  80.259  86.690  1.00 99.00
ATOM     79  CA  LEU    22      61.337  79.461  90.172  1.00 99.00
ATOM     80  CA  LYS    23      59.869  78.332  93.468  1.00 99.00
ATOM     81  CA  ARG    24      61.558  77.152  96.641  1.00 99.00
ATOM     82  CA  ILE    25      60.933  75.076  99.729  1.00 99.00
ATOM     83  CA  THR    26      62.328  75.660 103.170  1.00 86.00
ATOM     84  CA  LEU    27      61.292  72.736 105.280  1.00 47.00
ATOM     85  CA  PRO    28      62.495  69.919 107.471  1.00 56.00
ATOM     86  CA  VAL    29      61.165  66.498 106.429  1.00 62.00
ATOM     87  CA  ASP    30      57.384  66.442 106.498  1.00 79.00
ATOM     88  CA  PRO    31      54.850  64.356 104.556  1.00 77.00
ATOM     89  CA  HIS    32      53.795  67.394 102.424  1.00 63.00
ATOM     90  CA  LEU    33      57.368  68.068 101.214  1.00 54.00
ATOM     91  CA  GLU    34      56.954  66.648  97.695  1.00 48.00
ATOM     92  CA  ILE    35      53.722  68.374  96.707  1.00 74.00
ATOM     93  CA  THR    36      55.539  71.596  95.601  1.00 99.00
ATOM     94  CA  GLU    37      58.327  69.478  94.083  1.00 99.00
ATOM     95  CA  ILE    38      55.963  67.358  91.984  1.00 99.00
ATOM     96  CA  ALA    39      53.798  70.303  90.941  1.00 99.00
ATOM     97  CA  ASP    40      56.891  72.255  89.846  1.00 99.00
ATOM     98  CA  ARG    41      57.928  69.244  87.725  1.00 99.00
ATOM     99  CA  THR    42      54.421  69.043  86.214  1.00 99.00
ATOM    100  CA  LEU    43      54.527  72.656  84.950  1.00 54.00
ATOM    101  CA  ARG    44      58.198  73.165  84.032  1.00 53.00
ATOM    102  CA  ALA    49      59.040  75.496  86.922  1.00 49.00
ATOM    103  CA  LEU    50      62.434  75.006  88.649  1.00 34.00
ATOM    104  CA  LEU    51      62.302  73.959  92.312  1.00 57.00
ATOM    105  CA  PHE    52      64.964  74.867  94.902  1.00 57.00
ATOM    106  CA  GLU    53      64.778  72.746  98.036  1.00 64.00
ATOM    108  CA  ASN    54      66.079  72.747 104.846  1.00 70.00
ATOM    109  CA  PRO    55      64.825  74.582 107.944  1.00 69.00
ATOM    110  CA  LYS    56      68.127  73.652 109.669  1.00 81.00
ATOM    111  CA  GLY    57      70.126  76.005 107.420  1.00 79.00
ATOM    112  CA  TYR    58      71.732  78.916 109.252  1.00 99.00
ATOM    113  CA  SER    59      70.273  82.258 108.103  1.00 99.00
ATOM    114  CA  MET    60      73.527  83.047 106.316  1.00 99.00
ATOM    115  CA  PRO    61      73.251  79.854 104.265  1.00 73.00
ATOM    116  CA  VAL    62      69.588  80.537 103.485  1.00 92.00
ATOM    117  CA  LEU    63      70.089  84.142 102.354  1.00 71.00
ATOM    118  CA  CYS    64      72.891  82.945 100.072  1.00 62.00
ATOM    119  CA  ASN    65      71.080  79.824  98.786  1.00 92.00
ATOM    120  CA  LEU    66      67.805  81.627  97.986  1.00 86.00
ATOM    121  CA  PHE    67      69.831  84.606  96.773  1.00 68.00
ATOM    122  CA  GLY    68      71.106  82.327  94.015  1.00 54.00
ATOM    123  CA  THR    69      67.879  80.578  92.983  1.00 99.00
ATOM    124  CA  PRO    70      65.648  83.664  93.252  1.00 86.00
ATOM    125  CA  LYS    71      62.253  82.038  93.964  1.00 99.00
ATOM    126  CA  ARG    72      59.010  83.940  93.464  1.00 99.00
ATOM    127  CA  VAL    73      57.212  81.808  96.092  1.00 99.00
ATOM    128  CA  ALA    74      58.601  80.000  99.132  1.00 38.00
ATOM    129  CA  MET    75      56.756  77.017 100.573  1.00 47.00
ATOM    130  CA  GLY    76      57.858  77.091 104.199  1.00 61.00
ATOM    131  CA  MET    77      57.087  74.795 107.122  1.00 64.00
ATOM    132  CA  VAL    82      55.684  76.373 110.353  1.00 73.00
ATOM    133  CA  SER    83      59.103  75.971 112.009  1.00 89.00
ATOM    134  CA  ALA    84      60.903  77.605 109.078  1.00 99.00
ATOM    135  CA  LEU    85      58.621  80.647 108.772  1.00 80.00
ATOM    136  CA  ARG    86      60.727  82.945 111.048  1.00 67.00
ATOM    137  CA  GLU    87      63.885  82.330 108.979  1.00 55.00
ATOM    138  CA  VAL    88      62.063  82.742 105.633  1.00 51.00
ATOM    139  CA  GLY    89      60.537  86.075 106.788  1.00 22.00
ATOM    140  CA  LYS    90      64.072  87.285 107.576  1.00 41.00
ATOM    141  CA  LEU    91      65.419  86.041 104.268  1.00 58.00
ATOM    142  CA  LEU    92      62.694  88.050 102.515  1.00 97.00
ATOM    143  CA  ALA    93      64.141  91.337 103.894  1.00 99.00
ATOM    144  CA  PHE    94      67.379  90.680 101.918  1.00 99.00
ATOM    145  CA  LEU    95      66.111  88.542  99.001  1.00 99.00
ATOM    146  CA  LYS    96      63.315  90.968  98.156  1.00 99.00
ATOM    431  CA  ASP   314      85.929  42.446  89.794  1.00 99.00
ATOM    432  CA  ALA   315      85.136  46.161  89.190  1.00 86.00
ATOM    433  CA  ILE   316      83.717  46.766  92.684  1.00 85.00
ATOM    434  CA  TYR   317      84.379  50.398  93.719  1.00 64.00
ATOM    435  CA  THR   320      85.684  51.390  97.147  1.00 66.00
ATOM    436  CA  TYR   321      85.358  55.009  98.227  1.00 25.00
ATOM    437  CA  THR   322      87.926  55.977 100.842  1.00 36.00
ATOM    438  CA  GLY   323      87.477  59.668 101.699  1.00 24.00
ATOM    439  CA  ARG   324      87.560  63.200 100.303  1.00 41.00
ATOM    440  CA  PRO   325      90.861  64.382  98.750  1.00 35.00
ATOM    441  CA  PRO   326      90.660  67.731 100.614  1.00 67.00
ATOM    442  CA  ASP   327      90.529  65.717 103.903  1.00 82.00
ATOM    443  CA  GLU   328      93.704  63.633 103.547  1.00 92.00
ATOM    444  CA  PRO   329      96.089  64.361 106.398  1.00 99.00
ATOM    445  CA  ALA   330      99.532  65.330 105.122  1.00 99.00
ATOM    446  CA  VAL   331     101.791  63.749 107.748  1.00 99.00
ATOM    447  CA  LEU   332     105.303  64.010 106.296  1.00 99.00
ATOM    448  CA  GLY   333     105.058  62.236 102.918  1.00 99.00
ATOM    449  CA  VAL   334     101.975  60.207 103.932  1.00 84.00
ATOM    450  CA  ALA   335      98.399  60.881 102.901  1.00 67.00
ATOM    451  CA  LEU   336      96.250  59.608 105.790  1.00 99.00
ATOM    452  CA  ASN   337      92.440  59.233 105.283  1.00 99.00
ATOM    453  CA  GLU   338      90.453  60.347 108.376  1.00 99.00
ATOM    454  CA  VAL   339      87.777  57.730 107.554  1.00 99.00
ATOM    455  CA  PHE   340      90.244  54.883 108.135  1.00 99.00
ATOM    456  CA  VAL   341      90.993  56.188 111.645  1.00 80.00
ATOM    457  CA  PRO   342      87.328  56.980 112.315  1.00 49.00
ATOM    458  CA  ILE   343      86.571  53.298 111.620  1.00 80.00
ATOM    459  CA  LEU   344      89.051  52.055 114.221  1.00 99.00
ATOM    460  CA  GLN   345      87.660  54.526 116.755  1.00 99.00
ATOM    461  CA  LYS   346      84.085  53.381 116.050  1.00 99.00
ATOM    462  CA  GLN   347      84.914  49.738 116.818  1.00 99.00
TER
END
