
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS599_4-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS599_4-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    57        32 - 88          4.99    34.15
  LCS_AVERAGE:     33.79

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        32 - 51          1.84    37.41
  LONGEST_CONTINUOUS_SEGMENT:    20        33 - 52          1.76    37.15
  LONGEST_CONTINUOUS_SEGMENT:    20        34 - 53          1.99    37.15
  LONGEST_CONTINUOUS_SEGMENT:    20        77 - 96          1.82    48.25
  LCS_AVERAGE:     13.63

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        35 - 50          0.99    38.95
  LCS_AVERAGE:      8.60

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      3   17   31     1    3    6   16   17   18   19   22   24   26   30   34   38   45   49   52   54   55   57   62 
LCS_GDT     D       8     D       8     15   17   31     9   12   15   16   17   18   19   22   24   25   28   34   37   42   49   50   54   55   57   59 
LCS_GDT     L       9     L       9     15   17   31     7   12   15   16   17   18   21   22   26   36   40   43   43   51   54   56   57   61   63   64 
LCS_GDT     R      10     R      10     15   17   31     9   12   15   16   17   19   24   27   32   40   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     D      11     D      11     15   17   31     9   12   15   16   17   18   27   32   37   41   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     F      12     F      12     15   17   31     9   12   15   16   17   18   21   24   28   33   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     L      13     L      13     15   17   31     9   12   15   16   20   25   29   34   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     T      14     T      14     15   17   31     9   12   15   16   19   25   28   33   37   40   44   48   50   52   56   59   60   63   64   65 
LCS_GDT     L      15     L      15     15   17   31     9   12   15   16   17   18   19   22   24   25   28   35   39   47   52   54   57   61   64   65 
LCS_GDT     L      16     L      16     15   17   31     9   12   15   16   17   18   19   22   24   25   30   32   38   42   46   53   55   57   62   64 
LCS_GDT     E      17     E      17     15   17   31     9   12   15   16   17   18   19   22   26   30   32   36   39   42   48   53   55   57   61   64 
LCS_GDT     Q      18     Q      18     15   17   31     5   12   15   16   17   18   19   22   26   28   30   33   37   41   44   47   54   57   60   63 
LCS_GDT     Q      19     Q      19     15   17   31     5   12   15   16   17   18   19   22   24   25   28   29   35   38   41   46   49   50   53   58 
LCS_GDT     G      20     G      20     15   17   31     5   12   15   16   17   18   19   22   24   25   28   32   37   38   41   46   49   50   53   57 
LCS_GDT     E      21     E      21     15   17   31     4   11   15   16   17   18   19   20   23   25   28   28   29   33   39   42   46   50   53   57 
LCS_GDT     L      22     L      22     15   17   31     4   10   15   16   17   18   19   22   26   28   30   33   37   40   44   48   54   57   60   62 
LCS_GDT     K      23     K      23     10   17   31     0    4   13   16   17   18   19   22   24   25   29   32   37   40   42   46   49   53   56   58 
LCS_GDT     R      24     R      24      3    4   31     3    3    4    5    9   14   17   22   26   28   30   32   37   40   42   46   49   53   56   59 
LCS_GDT     I      25     I      25      3    8   31     3    3    4    6    9   14   17   22   26   28   30   33   37   40   43   46   51   54   58   62 
LCS_GDT     T      26     T      26      3    8   31     3    3    4    6    9   14   16   22   24   25   28   29   33   35   40   46   49   51   55   58 
LCS_GDT     L      27     L      27      7    8   31     3    6    7    8   10   10   13   22   24   25   28   28   33   35   39   41   46   50   53   57 
LCS_GDT     P      28     P      28      7    8   31     3    6    7    8   10   12   15   16   21   25   29   32   37   40   42   46   49   53   55   60 
LCS_GDT     V      29     V      29      7    8   46     3    6    7    8   10   14   16   22   26   28   30   33   37   40   43   48   51   55   59   62 
LCS_GDT     D      30     D      30      7    8   51     3    6    7    8   10   14   24   28   32   34   37   42   45   48   53   57   60   63   64   65 
LCS_GDT     P      31     P      31      7    8   56     3    6    7    8   10   14   20   30   32   34   38   43   47   51   55   59   60   63   64   65 
LCS_GDT     H      32     H      32      7   20   57     3    6    7   13   20   25   29   34   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     L      33     L      33     15   20   57     5    9   15   18   21   26   29   34   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     E      34     E      34     15   20   57     7   13   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     I      35     I      35     16   20   57     7   13   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     T      36     T      36     16   20   57     7   12   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     E      37     E      37     16   20   57     7   13   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     I      38     I      38     16   20   57     7   13   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     A      39     A      39     16   20   57     7   13   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     D      40     D      40     16   20   57     6   13   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     R      41     R      41     16   20   57     7   13   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     T      42     T      42     16   20   57     6   13   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     L      43     L      43     16   20   57     6   13   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     R      44     R      44     16   20   57     6   13   16   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     A      45     A      45     16   20   57     6   13   16   18   20   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     G      46     G      46     16   20   57     6   13   16   18   20   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     G      47     G      47     16   20   57     3    9   16   18   20   22   27   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     P      48     P      48     16   20   57     3    8   16   18   19   22   24   28   32   37   44   49   50   52   56   59   60   63   64   65 
LCS_GDT     A      49     A      49     16   20   57     4    8   16   18   19   22   24   28   33   40   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     L      50     L      50     16   20   57     3   13   16   18   20   24   27   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     L      51     L      51      8   20   57     4    9   15   18   20   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     F      52     F      52      8   20   57     4    8   10   16   19   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     E      53     E      53      8   20   57     4    8   10   15   18   24   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     N      54     N      54      8   18   57     4    7   10   11   13   18   21   25   29   31   33   40   45   51   56   59   60   63   64   65 
LCS_GDT     P      55     P      55      8   18   57     3    8   10   14   18   20   24   27   29   32   35   42   47   51   56   59   60   63   64   65 
LCS_GDT     K      56     K      56      8   18   57     5    8   10   14   18   20   23   27   29   31   33   37   40   48   50   54   60   63   64   65 
LCS_GDT     G      57     G      57      6   11   57     5    6    6    8   10   19   24   27   30   33   37   43   49   52   56   59   60   63   64   65 
LCS_GDT     Y      58     Y      58      6   11   57     5    6    6    8   10   11   24   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     S      59     S      59      6   19   57     5    6   10   14   19   23   24   26   29   40   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     M      60     M      60      6   19   57     5    5    6   13   19   22   24   25   28   31   33   39   44   51   54   56   58   62   63   64 
LCS_GDT     P      61     P      61      5   19   57     4    6    6   14   19   23   24   26   34   41   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     V      62     V      62      5   19   57     4    4    6   12   19   23   24   25   29   31   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     L      63     L      63      5   19   57     4    6   10   14   19   23   24   28   34   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     C      64     C      64      5   19   57     3    4   10   14   19   23   24   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     N      65     N      65      4   19   57     3    7   11   14   19   23   24   33   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     L      66     L      66      4   19   57     3    8   15   17   19   23   26   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     F      67     F      67      4   19   57     3   10   14   18   20   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     G      68     G      68     11   19   57     3    6    9   15   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     T      69     T      69     11   19   57     5    9   11   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     P      70     P      70     11   19   57     5    9   11   18   20   25   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     K      71     K      71     11   19   57     5    9   11   14   21   25   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     R      72     R      72     11   19   57     5   11   14   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     V      73     V      73     11   19   57     5    9   14   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     A      74     A      74     11   19   57     5   11   14   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     M      75     M      75     11   19   57     5    9   14   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     G      76     G      76     11   19   57     5   10   14   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     M      77     M      77     11   20   57     4    9   13   17   20   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     G      78     G      78     11   20   57     5    8   12   17   20   25   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     Q      79     Q      79      8   20   57     3    6   12   17   19   25   28   34   38   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     E      80     E      80      8   20   57     3    5    8   13   19   19   21   27   29   31   44   46   49   52   56   59   60   63   64   65 
LCS_GDT     D      81     D      81      8   20   57     4    6   13   17   19   19   20   22   24   29   33   36   44   49   54   59   60   63   64   65 
LCS_GDT     V      82     V      82      8   20   57     4    6   11   17   19   19   20   22   22   31   33   39   49   52   56   59   60   63   64   65 
LCS_GDT     S      83     S      83     14   20   57     4    6   11   16   19   19   23   25   32   41   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     A      84     A      84     14   20   57     5   12   13   17   19   23   26   31   38   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     L      85     L      85     14   20   57     3   12   14   18   21   26   29   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     R      86     R      86     14   20   57    10   12   13   17   19   23   28   35   39   42   45   49   50   52   56   59   60   63   64   65 
LCS_GDT     E      87     E      87     14   20   57    10   12   13   17   19   19   20   22   28   37   44   46   50   52   56   59   60   63   64   65 
LCS_GDT     V      88     V      88     14   20   57    10   12   13   17   19   19   20   22   28   35   42   46   50   52   56   59   60   63   64   65 
LCS_GDT     G      89     G      89     14   20   35    10   12   13   17   19   19   20   22   22   23   26   31   36   46   50   55   59   62   63   65 
LCS_GDT     K      90     K      90     14   20   35    10   12   13   17   19   19   20   22   22   23   24   26   34   41   42   44   47   57   62   64 
LCS_GDT     L      91     L      91     14   20   35    10   12   13   17   19   19   20   22   22   23   24   30   34   41   42   44   46   50   57   64 
LCS_GDT     L      92     L      92     14   20   35    10   12   13   17   19   19   20   22   22   23   23   25   29   31   33   40   45   46   48   50 
LCS_GDT     A      93     A      93     14   20   28    10   12   13   17   19   19   20   22   22   23   23   24   26   31   32   34   35   41   48   49 
LCS_GDT     F      94     F      94     14   20   28    10   12   13   17   19   19   20   22   22   23   23   24   29   31   33   34   35   41   46   49 
LCS_GDT     L      95     L      95     14   20   28    10   12   13   17   19   19   20   22   22   23   23   25   29   31   33   34   35   41   46   47 
LCS_GDT     K      96     K      96     14   20   28     8   12   13   17   19   19   20   22   22   23   23   24   24   28   28   28   31   35   36   36 
LCS_GDT     D     314     D     314      8   12   23     4    6   10   10   11   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27 
LCS_GDT     A     315     A     315      8   12   23     4    6   10   10   11   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27 
LCS_GDT     I     316     I     316      8   12   23     4    6   10   10   11   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27 
LCS_GDT     Y     317     Y     317      8   12   23     4    6   10   10   11   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27 
LCS_GDT     H     318     H     318      8   12   23     4    6   10   10   11   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27 
LCS_GDT     S     319     S     319      8   12   23     4    6   10   10   11   13   14   15   16   17   18   19   20   21   22   23   24   25   26   27 
LCS_GDT     T     320     T     320      8   12   23     3    6   10   10   11   13   14   15   16   17   18   19   20   21   22   23   24   25   26   28 
LCS_GDT     Y     321     Y     321      8   12   23     3    6   10   10   11   13   14   15   16   17   18   19   20   21   22   23   24   25   26   28 
LCS_GDT     T     322     T     322      4   12   26     3    4    6   10   11   12   14   15   16   17   18   19   20   21   22   23   24   25   26   28 
LCS_GDT     G     323     G     323      4   12   26     3    6   10   10   11   13   14   15   16   17   20   22   23   24   25   25   25   25   26   28 
LCS_GDT     R     324     R     324      4   12   26     3    6   10   10   11   13   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     P     325     P     325      4   12   26     3    9   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     P     326     P     326      4    7   26     3    4    4    6    7    8   10   13   21   21   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     D     327     D     327      3    7   26     3    3    3    4    8   17   18   19   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     E     328     E     328      3    7   26     3    3    3    6   10   13   17   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     P     329     P     329      5   17   26     3    6    7   10   13   16   18   18   20   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     A     330     A     330      6   17   26     3    6    7   10   13   15   16   18   19   20   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     V     331     V     331      8   17   26     3    6    8   12   13   16   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     L     332     L     332      9   17   26     3    9   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     G     333     G     333     10   17   26     3    6   11   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     V     334     V     334     10   17   26     3    7   11   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     A     335     A     335     12   17   26     3    7   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     L     336     L     336     12   17   26     3   10   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     N     337     N     337     12   17   26     5    7   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     E     338     E     338     12   17   26     5   10   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     V     339     V     339     12   17   26     5   10   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     F     340     F     340     12   17   26     6   10   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     V     341     V     341     12   17   26     6   10   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     P     342     P     342     12   17   26     6   10   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     I     343     I     343     12   17   26     6   10   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     L     344     L     344     12   17   26     6   10   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     Q     345     Q     345     12   17   26     5   10   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   25   28 
LCS_GDT     K     346     K     346     12   17   26     6   10   14   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_GDT     Q     347     Q     347     12   17   26     3    8   12   15   17   17   18   20   21   22   23   24   24   24   25   25   25   25   26   28 
LCS_AVERAGE  LCS_A:  18.67  (   8.60   13.63   33.79 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     16     18     21     26     29     35     39     42     45     49     50     52     56     59     60     63     64     65 
GDT PERCENT_CA   8.06  10.48  12.90  14.52  16.94  20.97  23.39  28.23  31.45  33.87  36.29  39.52  40.32  41.94  45.16  47.58  48.39  50.81  51.61  52.42
GDT RMS_LOCAL    0.27   0.70   0.99   1.12   1.53   1.92   2.13   2.82   3.01   3.26   3.48   3.90   3.86   4.08   4.46   4.74   4.83   5.18   5.32   5.45
GDT RMS_ALL_CA  46.90  37.97  38.95  38.48  34.85  34.58  34.65  34.64  34.65  34.32  34.25  34.30  34.28  34.15  34.25  34.08  34.12  34.18  34.15  34.16

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         14.275
LGA    D       8      D       8         14.048
LGA    L       9      L       9          9.535
LGA    R      10      R      10          6.106
LGA    D      11      D      11          5.325
LGA    F      12      F      12          7.261
LGA    L      13      L      13          4.449
LGA    T      14      T      14          7.514
LGA    L      15      L      15         12.021
LGA    L      16      L      16         13.812
LGA    E      17      E      17         15.407
LGA    Q      18      Q      18         19.766
LGA    Q      19      Q      19         23.086
LGA    G      20      G      20         24.490
LGA    E      21      E      21         20.939
LGA    L      22      L      22         15.705
LGA    K      23      K      23         19.870
LGA    R      24      R      24         20.401
LGA    I      25      I      25         18.011
LGA    T      26      T      26         20.506
LGA    L      27      L      27         23.983
LGA    P      28      P      28         19.584
LGA    V      29      V      29         15.426
LGA    D      30      D      30         11.378
LGA    P      31      P      31          8.918
LGA    H      32      H      32          4.155
LGA    L      33      L      33          4.422
LGA    E      34      E      34          3.522
LGA    I      35      I      35          2.967
LGA    T      36      T      36          3.172
LGA    E      37      E      37          3.703
LGA    I      38      I      38          3.237
LGA    A      39      A      39          2.471
LGA    D      40      D      40          3.142
LGA    R      41      R      41          3.922
LGA    T      42      T      42          2.430
LGA    L      43      L      43          1.567
LGA    R      44      R      44          2.634
LGA    A      45      A      45          3.799
LGA    G      46      G      46          3.428
LGA    G      47      G      47          3.923
LGA    P      48      P      48          6.899
LGA    A      49      A      49          6.225
LGA    L      50      L      50          3.887
LGA    L      51      L      51          1.797
LGA    F      52      F      52          2.789
LGA    E      53      E      53          3.774
LGA    N      54      N      54          8.517
LGA    P      55      P      55          7.645
LGA    K      56      K      56         10.483
LGA    G      57      G      57          7.228
LGA    Y      58      Y      58          3.861
LGA    S      59      S      59          6.932
LGA    M      60      M      60          9.493
LGA    P      61      P      61          5.533
LGA    V      62      V      62          7.198
LGA    L      63      L      63          4.839
LGA    C      64      C      64          3.904
LGA    N      65      N      65          4.240
LGA    L      66      L      66          3.960
LGA    F      67      F      67          3.309
LGA    G      68      G      68          2.691
LGA    T      69      T      69          2.406
LGA    P      70      P      70          3.412
LGA    K      71      K      71          3.652
LGA    R      72      R      72          2.310
LGA    V      73      V      73          1.662
LGA    A      74      A      74          2.839
LGA    M      75      M      75          3.489
LGA    G      76      G      76          2.445
LGA    M      77      M      77          3.049
LGA    G      78      G      78          3.954
LGA    Q      79      Q      79          5.369
LGA    E      80      E      80          7.739
LGA    D      81      D      81          9.452
LGA    V      82      V      82          7.819
LGA    S      83      S      83          7.148
LGA    A      84      A      84          6.150
LGA    L      85      L      85          1.268
LGA    R      86      R      86          3.952
LGA    E      87      E      87          8.640
LGA    V      88      V      88          8.182
LGA    G      89      G      89         10.579
LGA    K      90      K      90         14.751
LGA    L      91      L      91         16.495
LGA    L      92      L      92         17.242
LGA    A      93      A      93         21.173
LGA    F      94      F      94         24.820
LGA    L      95      L      95         25.340
LGA    K      96      K      96         28.324
LGA    D     314      D     314         66.127
LGA    A     315      A     315         60.599
LGA    I     316      I     316         59.889
LGA    Y     317      Y     317         54.130
LGA    H     318      H     318         55.082
LGA    S     319      S     319         51.052
LGA    T     320      T     320         52.029
LGA    Y     321      Y     321         49.364
LGA    T     322      T     322         51.285
LGA    G     323      G     323         51.747
LGA    R     324      R     324         57.491
LGA    P     325      P     325         61.744
LGA    P     326      P     326         63.563
LGA    D     327      D     327         62.115
LGA    E     328      E     328         60.603
LGA    P     329      P     329         56.031
LGA    A     330      A     330         55.185
LGA    V     331      V     331         60.759
LGA    L     332      L     332         63.369
LGA    G     333      G     333         62.104
LGA    V     334      V     334         62.284
LGA    A     335      A     335         65.271
LGA    L     336      L     336         66.642
LGA    N     337      N     337         66.970
LGA    E     338      E     338         68.468
LGA    V     339      V     339         70.193
LGA    F     340      F     340         71.552
LGA    V     341      V     341         73.424
LGA    P     342      P     342         74.290
LGA    I     343      I     343         74.447
LGA    L     344      L     344         75.730
LGA    Q     345      Q     345         77.821
LGA    K     346      K     346         78.133
LGA    Q     347      Q     347         79.293

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  124  124    4.0     35    2.82    25.202    22.733     1.198

LGA_LOCAL      RMSD =  2.822  Number of atoms =   35  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 34.881  Number of atoms =  124 
Std_ALL_ATOMS  RMSD = 27.162  (standard rmsd on all 124 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.407889 * X  +   0.764314 * Y  +   0.499450 * Z  +  65.309166
  Y_new =   0.710251 * X  +  -0.078125 * Y  +   0.699600 * Z  +  30.621065
  Z_new =   0.573734 * X  +   0.640094 * Y  +  -0.510989 * Z  +  88.181763 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.244501   -0.897091  [ DEG:   128.6004    -51.3995 ]
  Theta =  -0.611057   -2.530535  [ DEG:   -35.0110   -144.9890 ]
  Phi   =   2.092096   -1.049497  [ DEG:   119.8683    -60.1317 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_4-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_4-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  124  124   4.0   35   2.82  22.733    27.16
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_4-D1
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      7  CA  ASN     7      65.795  85.624  89.512  1.00  0.00              
ATOM      8  CA  ASP     8      65.169  82.847  91.877  1.00  0.00              
ATOM      9  CA  LEU     9      64.720  79.998  89.580  1.00  0.00              
ATOM     10  CA  ARG    10      67.007  80.807  87.298  1.00  0.00              
ATOM     11  CA  ASP    11      69.246  81.299  89.467  1.00  0.00              
ATOM     12  CA  PHE    12      68.973  77.727  90.571  1.00  0.00              
ATOM     13  CA  LEU    13      69.174  76.281  87.452  1.00  0.00              
ATOM     14  CA  THR    14      72.350  78.136  86.282  1.00  0.00              
ATOM     15  CA  LEU    15      74.521  77.092  89.689  1.00  0.00              
ATOM     16  CA  LEU    16      73.355  73.373  89.344  1.00  0.00              
ATOM     17  CA  GLU    17      74.246  73.426  85.661  1.00  0.00              
ATOM     18  CA  GLN    18      77.954  74.534  85.699  1.00  0.00              
ATOM     19  CA  GLN    19      79.042  72.877  88.124  1.00  0.00              
ATOM     20  CA  GLY    20      77.877  69.597  86.752  1.00  0.00              
ATOM     21  CA  GLU    21      75.988  68.929  89.845  1.00  0.00              
ATOM     22  CA  LEU    22      72.543  69.098  88.282  1.00  0.00              
ATOM     23  CA  LYS    23      73.238  65.981  86.130  1.00  0.00              
ATOM     24  CA  ARG    24      75.158  64.488  88.778  1.00  0.00              
ATOM     25  CA  ILE    25      72.348  64.040  91.135  1.00  0.00              
ATOM     26  CA  THR    26      70.224  62.370  88.482  1.00  0.00              
ATOM     27  CA  LEU    27      72.766  59.619  88.658  1.00  0.00              
ATOM     28  CA  PRO    28      72.057  58.780  92.430  1.00  0.00              
ATOM     29  CA  VAL    29      69.044  58.313  92.404  1.00  0.00              
ATOM     30  CA  ASP    30      67.082  55.822  95.080  1.00  0.00              
ATOM     31  CA  PRO    31      63.758  55.118  93.942  1.00  0.00              
ATOM     32  CA  HIS    32      61.718  55.765  96.987  1.00  0.00              
ATOM     33  CA  LEU    33      62.924  59.447  97.071  1.00  0.00              
ATOM     34  CA  GLU    34      60.659  62.002  97.884  1.00  0.00              
ATOM     35  CA  ILE    35      62.418  64.855  95.346  1.00  0.00              
ATOM     36  CA  THR    36      61.080  62.811  92.175  1.00  0.00              
ATOM     37  CA  GLU    37      57.543  62.186  92.777  1.00  0.00              
ATOM     38  CA  ILE    38      57.041  65.753  93.649  1.00  0.00              
ATOM     39  CA  ALA    39      58.652  67.198  90.798  1.00  0.00              
ATOM     40  CA  ASP    40      56.891  65.428  88.262  1.00  0.00              
ATOM     41  CA  ARG    41      53.723  65.856  89.860  1.00  0.00              
ATOM     42  CA  THR    42      53.564  69.658  90.186  1.00  0.00              
ATOM     43  CA  LEU    43      55.076  70.332  86.678  1.00  0.00              
ATOM     44  CA  ARG    44      52.584  68.137  85.065  1.00  0.00              
ATOM     45  CA  ALA    45      49.581  69.668  86.417  1.00  0.00              
ATOM     46  CA  GLY    46      50.630  73.331  86.076  1.00  0.00              
ATOM     47  CA  GLY    47      51.324  74.467  89.200  1.00  0.00              
ATOM     48  CA  PRO    48      53.266  74.982  92.163  1.00  0.00              
ATOM     49  CA  ALA    49      56.873  74.760  92.526  1.00  0.00              
ATOM     50  CA  LEU    50      59.502  73.112  94.734  1.00  0.00              
ATOM     51  CA  LEU    51      62.777  75.251  94.584  1.00  0.00              
ATOM     52  CA  PHE    52      66.131  73.179  95.303  1.00  0.00              
ATOM     53  CA  GLU    53      69.162  74.757  96.757  1.00  0.00              
ATOM     54  CA  ASN    54      72.090  72.197  96.838  1.00  0.00              
ATOM     55  CA  PRO    55      70.838  69.326  95.525  1.00  0.00              
ATOM     56  CA  LYS    56      73.053  66.794  97.206  1.00  0.00              
ATOM     57  CA  GLY    57      72.384  68.637 100.570  1.00  0.00              
ATOM     58  CA  TYR    58      68.839  69.227 100.685  1.00  0.00              
ATOM     59  CA  SER    59      65.876  67.441 101.646  1.00  0.00              
ATOM     60  CA  MET    60      62.892  68.145  99.268  1.00  0.00              
ATOM     61  CA  PRO    61      63.884  70.399  95.904  1.00  0.00              
ATOM     62  CA  VAL    62      60.349  71.641  94.072  1.00  0.00              
ATOM     63  CA  LEU    63      61.611  72.028  90.467  1.00  0.00              
ATOM     64  CA  CYS    64      60.209  70.917  87.187  1.00  0.00              
ATOM     65  CA  ASN    65      57.682  73.740  86.036  1.00  0.00              
ATOM     66  CA  LEU    66      60.624  75.864  86.200  1.00  0.00              
ATOM     67  CA  PHE    67      63.448  73.923  84.128  1.00  0.00              
ATOM     68  CA  GLY    68      60.558  74.014  81.788  1.00  0.00              
ATOM     69  CA  THR    69      58.612  76.756  80.925  1.00  0.00              
ATOM     70  CA  PRO    70      59.084  78.458  77.621  1.00  0.00              
ATOM     71  CA  LYS    71      61.145  81.243  78.687  1.00  0.00              
ATOM     72  CA  ARG    72      63.558  78.593  80.218  1.00  0.00              
ATOM     73  CA  VAL    73      63.857  76.866  77.161  1.00  0.00              
ATOM     74  CA  ALA    74      65.396  79.207  75.316  1.00  0.00              
ATOM     75  CA  MET    75      67.740  79.882  77.987  1.00  0.00              
ATOM     76  CA  GLY    76      68.845  76.628  78.363  1.00  0.00              
ATOM     77  CA  MET    77      69.711  75.885  74.740  1.00  0.00              
ATOM     78  CA  GLY    78      71.148  79.209  73.428  1.00  0.00              
ATOM     79  CA  GLN    79      69.083  79.410  70.461  1.00  0.00              
ATOM     80  CA  GLU    80      67.557  82.287  68.986  1.00  0.00              
ATOM     81  CA  ASP    81      66.688  80.885  65.898  1.00  0.00              
ATOM     82  CA  VAL    82      63.178  81.106  65.494  1.00  0.00              
ATOM     83  CA  SER    83      63.028  77.607  63.559  1.00  0.00              
ATOM     84  CA  ALA    84      64.806  76.394  66.022  1.00  0.00              
ATOM     85  CA  LEU    85      62.847  77.485  69.043  1.00  0.00              
ATOM     86  CA  ARG    86      60.051  76.395  67.263  1.00  0.00              
ATOM     87  CA  GLU    87      61.302  72.875  67.061  1.00  0.00              
ATOM     88  CA  VAL    88      62.423  72.567  70.497  1.00  0.00              
ATOM     89  CA  GLY    89      59.290  73.442  71.320  1.00  0.00              
ATOM     90  CA  LYS    90      57.231  70.805  69.618  1.00  0.00              
ATOM     91  CA  LEU    91      59.544  68.343  70.888  1.00  0.00              
ATOM     92  CA  LEU    92      59.067  69.373  74.487  1.00  0.00              
ATOM     93  CA  ALA    93      55.436  69.408  73.818  1.00  0.00              
ATOM     94  CA  PHE    94      55.546  65.699  73.023  1.00  0.00              
ATOM     95  CA  LEU    95      57.712  64.608  75.903  1.00  0.00              
ATOM     96  CA  LYS    96      55.832  65.983  78.504  1.00  0.00              
ATOM    314  CA  ASP   314      49.371  16.086  87.358  1.00  0.00              
ATOM    315  CA  ALA   315      52.667  17.726  88.142  1.00  0.00              
ATOM    316  CA  ILE   316      55.529  15.164  88.952  1.00  0.00              
ATOM    317  CA  TYR   317      58.139  16.573  90.648  1.00  0.00              
ATOM    318  CA  HIS   318      61.505  14.701  90.691  1.00  0.00              
ATOM    319  CA  SER   319      64.317  15.550  93.124  1.00  0.00              
ATOM    320  CA  THR   320      67.423  13.846  93.045  1.00  0.00              
ATOM    321  CA  TYR   321      70.236  14.695  94.981  1.00  0.00              
ATOM    322  CA  THR   322      72.091  12.778  97.311  1.00  0.00              
ATOM    323  CA  GLY   323      75.268  13.657  98.850  1.00  0.00              
ATOM    324  CA  ARG   324      77.766  11.303 100.368  1.00  0.00              
ATOM    325  CA  PRO   325      81.086  11.535  99.664  1.00  0.00              
ATOM    326  CA  PRO   326      83.524  12.814  97.142  1.00  0.00              
ATOM    327  CA  ASP   327      83.810  10.947  94.182  1.00  0.00              
ATOM    328  CA  GLU   328      80.033  11.385  92.794  1.00  0.00              
ATOM    329  CA  PRO   329      80.294  15.040  92.906  1.00  0.00              
ATOM    330  CA  ALA   330      78.257  16.138  89.959  1.00  0.00              
ATOM    331  CA  VAL   331      78.911  13.563  87.329  1.00  0.00              
ATOM    332  CA  LEU   332      79.043  10.134  88.479  1.00  0.00              
ATOM    333  CA  GLY   333      76.179  10.263  90.767  1.00  0.00              
ATOM    334  CA  VAL   334      73.776  12.117  88.544  1.00  0.00              
ATOM    335  CA  ALA   335      74.697  10.611  85.564  1.00  0.00              
ATOM    336  CA  LEU   336      74.813   7.110  85.799  1.00  0.00              
ATOM    337  CA  ASN   337      71.379   6.931  87.964  1.00  0.00              
ATOM    338  CA  GLU   338      68.975   8.230  85.824  1.00  0.00              
ATOM    339  CA  VAL   339      70.157   5.877  83.282  1.00  0.00              
ATOM    340  CA  PHE   340      70.146   2.757  85.072  1.00  0.00              
ATOM    341  CA  VAL   341      66.512   3.259  86.078  1.00  0.00              
ATOM    342  CA  PRO   342      65.416   3.801  82.362  1.00  0.00              
ATOM    343  CA  ILE   343      67.258   0.676  81.425  1.00  0.00              
ATOM    344  CA  LEU   344      65.726  -1.393  83.771  1.00  0.00              
ATOM    345  CA  GLN   345      62.090  -0.339  83.212  1.00  0.00              
ATOM    346  CA  LYS   346      62.274  -0.693  79.639  1.00  0.00              
ATOM    347  CA  GLN   347      64.119  -4.637  80.547  1.00  0.00              
TER                                                                             
END
