
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS599_3-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS599_3-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        24 - 63          4.92    29.63
  LONGEST_CONTINUOUS_SEGMENT:    40        25 - 64          4.96    29.64
  LCS_AVERAGE:     26.83

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        29 - 52          1.98    32.66
  LCS_AVERAGE:     13.42

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        33 - 48          0.93    30.60
  LCS_AVERAGE:      8.46

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      3   17   38     0    3    4    5    9   15   17   18   22   29   32   37   41   47   50   56   59   62   63   67 
LCS_GDT     D       8     D       8     15   17   38    10   13   15   15   16   17   18   18   21   25   31   37   41   47   50   56   59   62   66   73 
LCS_GDT     L       9     L       9     15   17   38    10   13   15   15   16   17   18   18   22   26   32   37   41   47   50   56   59   62   66   73 
LCS_GDT     R      10     R      10     15   17   38    10   13   15   15   16   17   18   18   22   26   32   37   41   47   50   56   59   62   66   73 
LCS_GDT     D      11     D      11     15   17   38    10   13   15   15   16   17   18   20   24   29   32   37   41   47   50   56   59   62   66   73 
LCS_GDT     F      12     F      12     15   17   38    10   13   15   15   16   17   18   22   25   30   33   37   41   47   50   56   59   62   66   73 
LCS_GDT     L      13     L      13     15   17   38    10   13   15   15   16   17   18   21   24   30   33   37   41   47   50   56   59   62   66   73 
LCS_GDT     T      14     T      14     15   17   38    10   13   15   15   16   17   18   22   25   30   33   37   41   47   50   56   59   62   66   73 
LCS_GDT     L      15     L      15     15   17   38    10   13   15   15   16   17   18   22   25   30   33   37   41   47   50   56   59   62   66   73 
LCS_GDT     L      16     L      16     15   17   38    10   13   15   15   16   17   18   22   25   30   33   37   41   47   50   56   59   62   66   73 
LCS_GDT     E      17     E      17     15   17   38    10   13   15   15   16   17   18   22   25   30   33   37   41   47   50   56   59   62   66   73 
LCS_GDT     Q      18     Q      18     15   17   38    10   13   15   15   16   17   18   22   25   30   33   37   41   47   50   56   59   62   66   73 
LCS_GDT     Q      19     Q      19     15   17   38     5   13   15   15   16   17   18   18   24   30   33   37   41   47   50   56   59   62   66   72 
LCS_GDT     G      20     G      20     15   17   38     5   13   15   15   16   17   18   18   23   29   33   37   40   47   50   56   59   62   66   72 
LCS_GDT     E      21     E      21     15   17   38     5   12   15   15   16   17   18   18   19   28   33   35   40   47   50   56   59   62   66   72 
LCS_GDT     L      22     L      22     15   17   38     5   10   15   15   16   17   18   18   22   30   33   37   40   47   50   56   59   62   66   73 
LCS_GDT     K      23     K      23     12   17   38     3    3    9   14   16   17   18   22   25   30   33   37   40   47   50   56   59   62   66   73 
LCS_GDT     R      24     R      24      3    4   40     3    3    3    3    8   15   18   22   25   30   33   37   41   48   52   57   59   62   66   73 
LCS_GDT     I      25     I      25      7   17   40     3    4    8   10   15   18   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     T      26     T      26      8   17   40     3    6    9   12   15   18   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     L      27     L      27      8   17   40     3    6    8   12   15   17   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     P      28     P      28      8   21   40     5    6    9   12   15   17   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     V      29     V      29      8   24   40     5    6    9   12   16   22   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     D      30     D      30      8   24   40     5    6   11   18   21   25   25   27   30   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     P      31     P      31     15   24   40     5   11   15   20   23   25   25   27   29   35   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     H      32     H      32     15   24   40     5    9   17   20   23   25   25   27   29   32   36   42   48   50   54   57   58   61   66   73 
LCS_GDT     L      33     L      33     16   24   40     3   12   17   20   23   25   25   27   28   30   36   39   47   50   54   57   58   60   66   73 
LCS_GDT     E      34     E      34     16   24   40     5   12   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     I      35     I      35     16   24   40     6   12   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     T      36     T      36     16   24   40     6   12   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     E      37     E      37     16   24   40     6   12   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     I      38     I      38     16   24   40     6   12   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     A      39     A      39     16   24   40     6   12   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     D      40     D      40     16   24   40     6   12   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     R      41     R      41     16   24   40     6   12   16   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     T      42     T      42     16   24   40     4   12   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     L      43     L      43     16   24   40     6   12   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     R      44     R      44     16   24   40     6   12   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     A      45     A      45     16   24   40     6   11   17   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     G      46     G      46     16   24   40     6   10   17   20   23   25   25   27   29   32   36   43   48   50   54   57   59   62   66   73 
LCS_GDT     G      47     G      47     16   24   40     6   10   17   20   23   25   25   27   29   32   36   43   48   50   54   57   59   62   66   73 
LCS_GDT     P      48     P      48     16   24   40     4   10   17   20   23   25   25   27   29   32   36   38   44   50   53   57   58   61   66   73 
LCS_GDT     A      49     A      49      8   24   40     5    7    7   17   23   25   25   27   29   32   36   38   47   50   54   57   58   61   66   73 
LCS_GDT     L      50     L      50      8   24   40     5   10   17   20   23   25   25   27   29   32   36   40   47   50   54   57   58   62   66   73 
LCS_GDT     L      51     L      51      8   24   40     5    7    8   14   23   25   25   27   28   29   30   33   36   40   45   50   57   59   61   68 
LCS_GDT     F      52     F      52      8   24   40     5    7   10   18   23   25   25   27   28   29   30   38   42   49   53   57   59   62   66   73 
LCS_GDT     E      53     E      53      8   23   40     5    7    8   12   14   18   24   26   27   28   28   30   31   38   45   47   51   54   59   62 
LCS_GDT     N      54     N      54      8   17   40     3    5    8   12   14   18   22   26   27   28   28   37   41   47   49   54   59   62   66   68 
LCS_GDT     P      55     P      55      8   15   40     4    7   13   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     K      56     K      56      8   10   40     4    7   13   20   23   25   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     G      57     G      57      5    7   40     4    5    7   12   15   22   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     Y      58     Y      58      5    8   40     4    5    7    9   18   22   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     S      59     S      59      6    8   40     4    6    7    9   20   22   25   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     M      60     M      60      6    8   40     4    6    7    9   12   18   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     P      61     P      61      6    8   40     4    6    6    7   11   18   22   24   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     V      62     V      62      6    8   40     4    6    6    7    8    9   12   19   25   33   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     L      63     L      63      6    8   40     4    6    6    7    8   13   18   23   27   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     C      64     C      64      6    8   40     3    6    6    7    8   13   16   19   24   28   31   36   41   47   52   56   59   62   66   73 
LCS_GDT     N      65     N      65      4    8   38     3    4    6    8   10   15   18   19   21   24   31   37   41   47   51   56   59   62   66   73 
LCS_GDT     L      66     L      66      4    8   38     3    4    5    6   10   18   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     F      67     F      67      4    4   38     3    4    6   11   15   17   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     G      68     G      68     11   13   38     7    9   10   11   12   15   18   19   26   31   35   38   42   48   53   57   59   62   66   73 
LCS_GDT     T      69     T      69     11   13   38     7    9   10   11   15   17   18   24   28   32   37   39   43   49   54   57   59   62   66   73 
LCS_GDT     P      70     P      70     11   13   38     7    9   10   11   13   18   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     K      71     K      71     11   13   38     5    9   10   11   12   18   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     R      72     R      72     11   13   38     7    9   10   11   12   16   20   26   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     V      73     V      73     11   13   38     7    9   10   11   12   18   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     A      74     A      74     11   13   38     7    9   10   11   15   20   24   27   32   36   37   43   48   50   54   57   59   62   66   73 
LCS_GDT     M      75     M      75     11   13   38     7    9   10   11   12   16   18   23   26   36   37   43   48   50   54   57   58   61   66   73 
LCS_GDT     G      76     G      76     11   13   29     4    9   10   11   12   16   18   20   23   28   35   42   44   49   54   57   58   60   66   73 
LCS_GDT     M      77     M      77     11   16   29     4    9   10   11   18   20   21   21   25   33   37   43   48   50   54   57   58   61   66   73 
LCS_GDT     G      78     G      78     11   19   29     4    6   10   13   18   20   21   21   24   28   31   42   44   50   54   57   58   60   63   71 
LCS_GDT     Q      79     Q      79      7   19   29     4    7    8   13   18   20   21   21   24   33   37   43   48   50   54   57   58   61   66   73 
LCS_GDT     E      80     E      80      7   19   29     3    7    7    9   15   19   21   21   24   28   32   37   48   50   54   57   58   60   66   73 
LCS_GDT     D      81     D      81      7   19   29     5    7    9   15   18   20   21   23   24   30   36   43   48   50   54   57   58   61   66   73 
LCS_GDT     V      82     V      82      7   19   29     5    7    9   15   18   20   21   23   29   36   37   43   48   50   54   57   58   61   66   73 
LCS_GDT     S      83     S      83     14   19   29     5    9   12   14   18   20   21   23   29   32   36   41   48   50   54   57   58   61   66   73 
LCS_GDT     A      84     A      84     14   19   29     5   13   13   15   18   20   21   23   29   32   36   43   48   50   54   57   58   61   66   73 
LCS_GDT     L      85     L      85     14   19   29     4   13   13   15   18   20   21   27   32   36   37   43   48   50   54   57   58   61   66   73 
LCS_GDT     R      86     R      86     14   19   29     6   13   13   15   18   20   21   21   23   24   25   26   28   38   50   53   58   61   66   73 
LCS_GDT     E      87     E      87     14   19   29     6   13   13   15   18   20   21   21   23   24   25   26   28   41   44   46   55   59   63   73 
LCS_GDT     V      88     V      88     14   19   29     4   13   13   15   18   20   21   21   23   30   37   42   48   50   54   57   58   61   66   73 
LCS_GDT     G      89     G      89     14   19   29     6   13   13   15   18   20   21   21   23   24   25   26   26   28   41   49   54   61   66   73 
LCS_GDT     K      90     K      90     14   19   29     4   13   13   15   18   20   21   21   23   24   25   26   26   27   27   35   39   45   49   54 
LCS_GDT     L      91     L      91     14   19   29     4   13   13   15   18   20   21   21   23   24   25   26   26   28   31   39   47   58   63   69 
LCS_GDT     L      92     L      92     14   19   29     6   13   13   15   18   20   21   21   23   24   25   26   26   32   41   45   54   60   66   73 
LCS_GDT     A      93     A      93     14   19   29     6   13   13   15   18   20   21   21   23   24   25   26   26   27   27   28   28   31   33   53 
LCS_GDT     F      94     F      94     14   19   29     6   13   13   15   18   20   21   21   23   24   25   26   26   27   27   28   28   31   33   34 
LCS_GDT     L      95     L      95     14   19   29     6   13   13   15   18   20   21   21   23   24   25   26   26   28   31   35   43   47   55   64 
LCS_GDT     K      96     K      96     14   19   29     6   13   13   15   18   20   21   21   23   24   25   26   26   27   27   28   28   31   34   39 
LCS_GDT     D     314     D     314      7   13   17     4    6    8   11   12   12   13   13   13   13   13   13   15   17   18   18   18   21   22   23 
LCS_GDT     A     315     A     315      7   13   17     4    6    8   11   12   12   13   13   13   13   13   13   15   17   18   18   18   21   22   23 
LCS_GDT     I     316     I     316      7   13   17     4    6    8   11   12   12   13   13   13   13   13   13   15   17   18   18   19   22   25   26 
LCS_GDT     Y     317     Y     317      7   13   17     4    6    8   11   12   12   13   13   13   13   13   13   15   17   18   18   21   23   25   26 
LCS_GDT     H     318     H     318      7   13   17     4    6    8   11   12   12   13   13   13   13   13   13   15   17   18   18   21   23   25   26 
LCS_GDT     S     319     S     319      7   13   17     4    6    8   11   12   12   13   13   13   13   13   13   15   17   18   18   22   22   25   26 
LCS_GDT     T     320     T     320      7   13   17     3    6    8   11   12   12   13   13   13   13   13   13   15   17   18   19   22   23   25   26 
LCS_GDT     Y     321     Y     321      5   13   17     3    4    6   11   12   12   13   13   13   13   13   13   15   17   19   21   24   27   27   27 
LCS_GDT     T     322     T     322      3   13   26     3    4    8   11   12   12   13   13   13   13   13   13   18   20   23   23   25   27   27   27 
LCS_GDT     G     323     G     323      4   13   26     4    4    8   11   12   12   13   13   14   17   19   20   20   23   24   25   25   27   27   27 
LCS_GDT     R     324     R     324      4   13   26     4    4    4    5    7   12   14   17   18   19   19   20   20   23   24   25   25   27   27   27 
LCS_GDT     P     325     P     325      4   13   26     4    4    7   11   12   12   13   13   17   19   19   20   20   23   24   25   25   27   27   27 
LCS_GDT     P     326     P     326      4   13   26     4    4    4    8   12   12   13   13   13   13   13   17   18   22   24   25   25   27   27   27 
LCS_GDT     D     327     D     327      3    6   26     3    4    4    4    5   12   14   17   18   19   19   20   21   23   24   25   25   27   27   27 
LCS_GDT     E     328     E     328      3    6   26     3    3    3    4    8    9   13   17   18   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     P     329     P     329      3    6   26     3    4    4    4    5    5    6   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     A     330     A     330      3    4   26     3    3    3    3    4   15   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     V     331     V     331      3   17   26     3    3    9   12   14   15   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     L     332     L     332      5   17   26     3    4   10   12   14   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     G     333     G     333      7   17   26     3    4    9   11   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     V     334     V     334      7   17   26     3    7    9   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     A     335     A     335      7   17   26     3    7    9   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     L     336     L     336     12   17   26     3    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     N     337     N     337     12   17   26     3    7   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     E     338     E     338     12   17   26     3    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     V     339     V     339     12   17   26     3    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     F     340     F     340     12   17   26     3    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     V     341     V     341     12   17   26     6    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     P     342     P     342     12   17   26     6    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     I     343     I     343     12   17   26     6    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     L     344     L     344     12   17   26     6    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     Q     345     Q     345     12   17   26     6    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     K     346     K     346     12   17   26     6    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_GDT     Q     347     Q     347     12   17   26     3    8   11   13   15   16   16   19   19   19   20   20   21   23   24   25   25   27   27   27 
LCS_AVERAGE  LCS_A:  16.24  (   8.46   13.42   26.83 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     17     20     23     25     25     27     32     36     37     43     48     50     54     57     59     62     66     73 
GDT PERCENT_CA   8.06  10.48  13.71  16.13  18.55  20.16  20.16  21.77  25.81  29.03  29.84  34.68  38.71  40.32  43.55  45.97  47.58  50.00  53.23  58.87
GDT RMS_LOCAL    0.36   0.58   1.02   1.29   1.60   1.77   1.77   2.11   3.45   3.70   3.76   4.24   4.56   4.68   4.94   5.16   5.68   5.92   6.43   6.96
GDT RMS_ALL_CA  28.86  29.03  31.44  32.51  33.62  33.38  33.38  33.16  30.14  30.13  30.12  29.88  29.81  29.95  29.90  29.85  31.19  31.29  30.38  29.18

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         40.162
LGA    D       8      D       8         35.841
LGA    L       9      L       9         31.090
LGA    R      10      R      10         31.172
LGA    D      11      D      11         32.798
LGA    F      12      F      12         28.663
LGA    L      13      L      13         26.375
LGA    T      14      T      14         28.861
LGA    L      15      L      15         29.124
LGA    L      16      L      16         25.440
LGA    E      17      E      17         25.451
LGA    Q      18      Q      18         28.996
LGA    Q      19      Q      19         27.588
LGA    G      20      G      20         24.774
LGA    E      21      E      21         22.000
LGA    L      22      L      22         20.734
LGA    K      23      K      23         20.107
LGA    R      24      R      24         16.378
LGA    I      25      I      25          9.344
LGA    T      26      T      26          9.305
LGA    L      27      L      27          9.480
LGA    P      28      P      28          8.089
LGA    V      29      V      29          5.494
LGA    D      30      D      30          3.879
LGA    P      31      P      31          2.794
LGA    H      32      H      32          0.934
LGA    L      33      L      33          2.127
LGA    E      34      E      34          1.365
LGA    I      35      I      35          1.552
LGA    T      36      T      36          1.681
LGA    E      37      E      37          0.574
LGA    I      38      I      38          0.883
LGA    A      39      A      39          1.741
LGA    D      40      D      40          1.954
LGA    R      41      R      41          1.940
LGA    T      42      T      42          1.412
LGA    L      43      L      43          1.295
LGA    R      44      R      44          1.698
LGA    A      45      A      45          0.601
LGA    G      46      G      46          0.665
LGA    G      47      G      47          1.224
LGA    P      48      P      48          1.009
LGA    A      49      A      49          2.206
LGA    L      50      L      50          0.514
LGA    L      51      L      51          3.729
LGA    F      52      F      52          3.643
LGA    E      53      E      53          7.012
LGA    N      54      N      54          8.114
LGA    P      55      P      55          2.303
LGA    K      56      K      56          2.173
LGA    G      57      G      57          3.443
LGA    Y      58      Y      58          3.973
LGA    S      59      S      59          5.268
LGA    M      60      M      60          8.185
LGA    P      61      P      61          7.732
LGA    V      62      V      62         12.698
LGA    L      63      L      63         12.601
LGA    C      64      C      64         16.064
LGA    N      65      N      65         16.713
LGA    L      66      L      66         14.513
LGA    F      67      F      67         13.897
LGA    G      68      G      68         14.453
LGA    T      69      T      69         14.994
LGA    P      70      P      70         16.434
LGA    K      71      K      71         17.265
LGA    R      72      R      72         17.179
LGA    V      73      V      73         18.747
LGA    A      74      A      74         20.666
LGA    M      75      M      75         21.769
LGA    G      76      G      76         23.187
LGA    M      77      M      77         23.286
LGA    G      78      G      78         23.981
LGA    Q      79      Q      79         20.422
LGA    E      80      E      80         17.979
LGA    D      81      D      81         14.169
LGA    V      82      V      82         13.168
LGA    S      83      S      83         11.282
LGA    A      84      A      84         14.437
LGA    L      85      L      85         18.876
LGA    R      86      R      86         19.156
LGA    E      87      E      87         17.864
LGA    V      88      V      88         21.002
LGA    G      89      G      89         25.392
LGA    K      90      K      90         25.227
LGA    L      91      L      91         23.538
LGA    L      92      L      92         28.656
LGA    A      93      A      93         32.249
LGA    F      94      F      94         30.098
LGA    L      95      L      95         31.241
LGA    K      96      K      96         37.404
LGA    D     314      D     314         56.953
LGA    A     315      A     315         55.757
LGA    I     316      I     316         56.691
LGA    Y     317      Y     317         56.653
LGA    H     318      H     318         56.242
LGA    S     319      S     319         56.132
LGA    T     320      T     320         57.761
LGA    Y     321      Y     321         58.816
LGA    T     322      T     322         58.766
LGA    G     323      G     323         61.298
LGA    R     324      R     324         65.772
LGA    P     325      P     325         63.925
LGA    P     326      P     326         65.604
LGA    D     327      D     327         62.779
LGA    E     328      E     328         59.161
LGA    P     329      P     329         61.163
LGA    A     330      A     330         63.007
LGA    V     331      V     331         61.095
LGA    L     332      L     332         54.114
LGA    G     333      G     333         55.607
LGA    V     334      V     334         57.928
LGA    A     335      A     335         53.648
LGA    L     336      L     336         49.075
LGA    N     337      N     337         50.858
LGA    E     338      E     338         50.542
LGA    V     339      V     339         45.699
LGA    F     340      F     340         45.203
LGA    V     341      V     341         46.771
LGA    P     342      P     342         44.644
LGA    I     343      I     343         41.500
LGA    L     344      L     344         42.846
LGA    Q     345      Q     345         43.460
LGA    K     346      K     346         40.765
LGA    Q     347      Q     347         40.519

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  124  124    4.0     27    2.11    23.589    21.312     1.221

LGA_LOCAL      RMSD =  2.112  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 32.615  Number of atoms =  124 
Std_ALL_ATOMS  RMSD = 23.950  (standard rmsd on all 124 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.476675 * X  +   0.852192 * Y  +   0.215755 * Z  +  91.251686
  Y_new =   0.866038 * X  +  -0.413122 * Y  +  -0.281617 * Z  +  90.935913
  Z_new =  -0.150858 * X  +   0.321092 * Y  +  -0.934955 * Z  +  91.785980 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.810783   -0.330810  [ DEG:   161.0460    -18.9540 ]
  Theta =   0.151436    2.990156  [ DEG:     8.6767    171.3233 ]
  Phi   =   1.067639   -2.073954  [ DEG:    61.1712   -118.8288 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_3-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_3-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  124  124   4.0   27   2.11  21.312    23.95
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_3-D1
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      7  CA  ASN     7      55.398  91.395 113.717  1.00  0.00              
ATOM      8  CA  ASP     8      55.139  90.929 110.278  1.00  0.00              
ATOM      9  CA  LEU     9      57.084  87.867 109.956  1.00  0.00              
ATOM     10  CA  ARG    10      55.411  86.241 113.017  1.00  0.00              
ATOM     11  CA  ASP    11      52.113  86.640 110.938  1.00  0.00              
ATOM     12  CA  PHE    12      54.186  84.928 107.969  1.00  0.00              
ATOM     13  CA  LEU    13      55.203  82.317 110.527  1.00  0.00              
ATOM     14  CA  THR    14      51.751  81.793 111.909  1.00  0.00              
ATOM     15  CA  LEU    15      50.411  81.269 108.886  1.00  0.00              
ATOM     16  CA  LEU    16      52.441  78.946 108.043  1.00  0.00              
ATOM     17  CA  GLU    17      51.948  76.851 110.879  1.00  0.00              
ATOM     18  CA  GLN    18      48.417  76.803 110.713  1.00  0.00              
ATOM     19  CA  GLN    19      47.817  75.572 107.343  1.00  0.00              
ATOM     20  CA  GLY    20      49.875  72.321 107.762  1.00  0.00              
ATOM     21  CA  GLU    21      52.973  73.459 105.900  1.00  0.00              
ATOM     22  CA  LEU    22      55.761  73.573 108.478  1.00  0.00              
ATOM     23  CA  LYS    23      54.450  70.490 110.350  1.00  0.00              
ATOM     24  CA  ARG    24      54.608  68.190 106.919  1.00  0.00              
ATOM     25  CA  ILE    25      57.997  69.604 105.285  1.00  0.00              
ATOM     26  CA  THR    26      59.559  70.221 108.435  1.00  0.00              
ATOM     27  CA  LEU    27      58.970  66.832 109.891  1.00  0.00              
ATOM     28  CA  PRO    28      59.861  63.524 108.670  1.00  0.00              
ATOM     29  CA  VAL    29      59.154  63.901 104.754  1.00  0.00              
ATOM     30  CA  ASP    30      60.646  61.191 102.750  1.00  0.00              
ATOM     31  CA  PRO    31      62.773  62.150  99.734  1.00  0.00              
ATOM     32  CA  HIS    32      61.237  59.702  97.346  1.00  0.00              
ATOM     33  CA  LEU    33      57.600  60.821  97.870  1.00  0.00              
ATOM     34  CA  GLU    34      57.347  64.249  98.531  1.00  0.00              
ATOM     35  CA  ILE    35      59.317  65.785  96.344  1.00  0.00              
ATOM     36  CA  THR    36      58.393  64.651  93.413  1.00  0.00              
ATOM     37  CA  GLU    37      54.871  65.106  93.417  1.00  0.00              
ATOM     38  CA  ILE    38      55.839  68.692  93.989  1.00  0.00              
ATOM     39  CA  ALA    39      58.111  69.121  91.377  1.00  0.00              
ATOM     40  CA  ASP    40      55.530  67.883  88.912  1.00  0.00              
ATOM     41  CA  ARG    41      52.887  69.686  89.784  1.00  0.00              
ATOM     42  CA  THR    42      54.370  72.790  89.143  1.00  0.00              
ATOM     43  CA  LEU    43      54.908  71.713  86.130  1.00  0.00              
ATOM     44  CA  ARG    44      52.022  70.354  84.752  1.00  0.00              
ATOM     45  CA  ALA    45      49.947  73.400  85.226  1.00  0.00              
ATOM     46  CA  GLY    46      52.082  76.093  84.052  1.00  0.00              
ATOM     47  CA  GLY    47      53.221  76.694  87.448  1.00  0.00              
ATOM     48  CA  PRO    48      57.037  77.594  88.250  1.00  0.00              
ATOM     49  CA  ALA    49      58.998  74.653  88.613  1.00  0.00              
ATOM     50  CA  LEU    50      61.185  73.946  91.773  1.00  0.00              
ATOM     51  CA  LEU    51      63.874  71.320  91.805  1.00  0.00              
ATOM     52  CA  PHE    52      64.781  69.564  94.993  1.00  0.00              
ATOM     53  CA  GLU    53      67.713  67.850  95.694  1.00  0.00              
ATOM     54  CA  ASN    54      67.850  64.967  98.195  1.00  0.00              
ATOM     55  CA  PRO    55      65.101  65.814 100.490  1.00  0.00              
ATOM     56  CA  LYS    56      66.800  64.514 103.303  1.00  0.00              
ATOM     57  CA  GLY    57      69.953  66.894 103.178  1.00  0.00              
ATOM     58  CA  TYR    58      68.898  69.664 101.658  1.00  0.00              
ATOM     59  CA  SER    59      68.961  72.960 103.307  1.00  0.00              
ATOM     60  CA  MET    60      66.612  74.961 101.285  1.00  0.00              
ATOM     61  CA  PRO    61      65.902  78.059  99.869  1.00  0.00              
ATOM     62  CA  VAL    62      62.888  80.183  99.992  1.00  0.00              
ATOM     63  CA  LEU    63      60.999  81.504  96.784  1.00  0.00              
ATOM     64  CA  CYS    64      59.394  83.934  96.024  1.00  0.00              
ATOM     65  CA  ASN    65      55.724  83.131  96.642  1.00  0.00              
ATOM     66  CA  LEU    66      56.046  79.894  95.506  1.00  0.00              
ATOM     67  CA  PHE    67      58.195  80.040  92.550  1.00  0.00              
ATOM     68  CA  GLY    68      57.399  83.528  91.477  1.00  0.00              
ATOM     69  CA  THR    69      54.259  83.880  91.811  1.00  0.00              
ATOM     70  CA  PRO    70      51.731  84.463  88.789  1.00  0.00              
ATOM     71  CA  LYS    71      50.501  87.479  90.157  1.00  0.00              
ATOM     72  CA  ARG    72      53.751  89.090  90.459  1.00  0.00              
ATOM     73  CA  VAL    73      53.835  88.698  87.286  1.00  0.00              
ATOM     74  CA  ALA    74      50.374  90.065  86.287  1.00  0.00              
ATOM     75  CA  MET    75      51.035  93.378  88.415  1.00  0.00              
ATOM     76  CA  GLY    76      54.118  94.623  87.500  1.00  0.00              
ATOM     77  CA  MET    77      54.028  94.173  83.736  1.00  0.00              
ATOM     78  CA  GLY    78      50.667  95.370  82.961  1.00  0.00              
ATOM     79  CA  GLN    79      49.583  91.868  81.525  1.00  0.00              
ATOM     80  CA  GLU    80      47.017  89.330  81.451  1.00  0.00              
ATOM     81  CA  ASP    81      48.080  87.800  77.999  1.00  0.00              
ATOM     82  CA  VAL    82      49.685  84.925  79.643  1.00  0.00              
ATOM     83  CA  SER    83      52.409  84.362  76.862  1.00  0.00              
ATOM     84  CA  ALA    84      53.410  87.722  77.573  1.00  0.00              
ATOM     85  CA  LEU    85      53.794  87.999  81.069  1.00  0.00              
ATOM     86  CA  ARG    86      55.813  84.736  80.916  1.00  0.00              
ATOM     87  CA  GLU    87      58.416  86.126  78.904  1.00  0.00              
ATOM     88  CA  VAL    88      58.608  88.628  80.701  1.00  0.00              
ATOM     89  CA  GLY    89      59.369  87.103  84.062  1.00  0.00              
ATOM     90  CA  LYS    90      61.793  85.414  83.076  1.00  0.00              
ATOM     91  CA  LEU    91      63.854  87.860  81.234  1.00  0.00              
ATOM     92  CA  LEU    92      64.187  89.106  84.799  1.00  0.00              
ATOM     93  CA  ALA    93      65.061  86.438  86.984  1.00  0.00              
ATOM     94  CA  PHE    94      68.401  86.006  84.726  1.00  0.00              
ATOM     95  CA  LEU    95      68.949  89.433  85.273  1.00  0.00              
ATOM     96  CA  LYS    96      68.909  89.230  88.945  1.00  0.00              
ATOM    314  CA  ASP   314     115.623 117.228  95.453  1.00  0.00              
ATOM    315  CA  ALA   315     113.752 114.408  97.011  1.00  0.00              
ATOM    316  CA  ILE   316     114.172 110.901  95.868  1.00  0.00              
ATOM    317  CA  TYR   317     111.527 108.860  96.421  1.00  0.00              
ATOM    318  CA  HIS   318     112.007 105.222  96.545  1.00  0.00              
ATOM    319  CA  SER   319     109.210 102.718  95.685  1.00  0.00              
ATOM    320  CA  THR   320     109.444  99.331  97.003  1.00  0.00              
ATOM    321  CA  TYR   321     107.930  96.595  97.990  1.00  0.00              
ATOM    322  CA  THR   322     106.235  93.796  96.134  1.00  0.00              
ATOM    323  CA  GLY   323     107.245  90.212  96.299  1.00  0.00              
ATOM    324  CA  ARG   324     110.006  89.291  93.692  1.00  0.00              
ATOM    325  CA  PRO   325     110.752  85.759  93.719  1.00  0.00              
ATOM    326  CA  PRO   326     113.662  84.462  95.177  1.00  0.00              
ATOM    327  CA  ASP   327     115.274  82.840  92.737  1.00  0.00              
ATOM    328  CA  GLU   328     114.913  85.315  90.189  1.00  0.00              
ATOM    329  CA  PRO   329     117.973  85.019  88.164  1.00  0.00              
ATOM    330  CA  ALA   330     116.985  84.514  84.825  1.00  0.00              
ATOM    331  CA  VAL   331     116.848  80.647  83.936  1.00  0.00              
ATOM    332  CA  LEU   332     113.689  78.284  83.639  1.00  0.00              
ATOM    333  CA  GLY   333     114.157  76.718  80.474  1.00  0.00              
ATOM    334  CA  VAL   334     114.082  73.018  81.207  1.00  0.00              
ATOM    335  CA  ALA   335     111.813  71.826  83.792  1.00  0.00              
ATOM    336  CA  LEU   336     109.153  74.093  83.076  1.00  0.00              
ATOM    337  CA  ASN   337     108.667  74.014  79.279  1.00  0.00              
ATOM    338  CA  GLU   338     107.837  70.519  79.093  1.00  0.00              
ATOM    339  CA  VAL   339     105.021  70.514  81.555  1.00  0.00              
ATOM    340  CA  PHE   340     103.259  73.430  80.834  1.00  0.00              
ATOM    341  CA  VAL   341     102.754  73.225  77.435  1.00  0.00              
ATOM    342  CA  PRO   342     101.387  69.681  77.612  1.00  0.00              
ATOM    343  CA  ILE   343      98.688  70.499  80.164  1.00  0.00              
ATOM    344  CA  LEU   344      97.747  73.281  77.840  1.00  0.00              
ATOM    345  CA  GLN   345      97.542  71.056  75.027  1.00  0.00              
ATOM    346  CA  LYS   346      95.416  68.686  76.301  1.00  0.00              
ATOM    347  CA  GLN   347      92.901  71.272  77.643  1.00  0.00              
TER                                                                             
END
