
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS393_4-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS393_4-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        76 - 325         4.97    24.04
  LCS_AVERAGE:     22.41

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20       328 - 347         1.51    33.66
  LCS_AVERAGE:     10.68

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       328 - 342         0.98    32.00
  LCS_AVERAGE:      7.00

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      3   15   21     0    4    4    7   11   13   17   19   20   21   21   22   24   25   25   27   28   32   39   41 
LCS_GDT     D       8     D       8     11   15   21    10   11   12   13   13   15   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     L       9     L       9     11   15   21    10   11   12   13   13   15   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     R      10     R      10     11   15   21    10   11   12   13   13   15   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     D      11     D      11     11   15   21    10   11   12   13   13   15   17   19   20   21   21   23   25   28   31   33   34   37   39   44 
LCS_GDT     F      12     F      12     11   15   21    10   11   12   13   13   15   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     L      13     L      13     11   15   21    10   11   12   13   13   15   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     T      14     T      14     11   15   21    10   11   12   13   13   15   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     L      15     L      15     11   15   21    10   11   12   13   13   15   16   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     L      16     L      16     11   15   21    10   11   12   13   13   15   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     E      17     E      17     11   15   21    10   11   12   13   13   15   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     Q      18     Q      18     11   15   21    10   11   12   13   13   15   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     Q      19     Q      19      4   15   21     3    4    5    7   12   15   17   19   20   21   21   22   24   27   31   33   34   37   39   42 
LCS_GDT     G      20     G      20      4   15   26     3    4   12   13   13   15   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     E      21     E      21      4   15   27     3    4    6   12   13   14   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     L      22     L      22      4    7   27     3    4    5    6   11   14   17   19   20   21   21   23   26   28   31   33   34   37   39   44 
LCS_GDT     K      23     K      23      4    7   27     3    4    5    7   11   14   17   19   20   21   23   24   27   30   33   37   41   41   43   44 
LCS_GDT     R      24     R      24      4    7   31     3    4    4    6    8    9   14   19   20   21   23   24   27   31   36   38   41   42   44   48 
LCS_GDT     I      25     I      25      4    7   31     3    4    4    6    8    8   12   13   18   21   24   30   32   37   39   40   42   43   45   51 
LCS_GDT     T      26     T      26      4    7   31     3    3    4    6    8    8   12   13   15   21   23   26   31   32   36   39   41   42   44   48 
LCS_GDT     L      27     L      27      3    7   31     3    3    4    6    8    8   12   13   17   21   23   28   31   33   36   40   41   42   44   48 
LCS_GDT     P      28     P      28      4    7   31     3    3    4    6    8    8   12   16   19   24   27   30   33   37   39   40   41   43   44   44 
LCS_GDT     V      29     V      29      4    7   31     3    3    4    5    6    8   10   14   26   29   34   35   37   38   39   42   48   49   52   55 
LCS_GDT     D      30     D      30      4   16   31     3    4    5   10   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     P      31     P      31      4   16   31     3    4    5   11   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     H      32     H      32     14   16   31     3    4   11   14   15   18   24   25   30   32   34   35   37   38   39   42   44   49   52   55 
LCS_GDT     L      33     L      33     14   16   31     7   12   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     E      34     E      34     14   16   31     6   12   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     I      35     I      35     14   16   31     6   12   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     T      36     T      36     14   16   31     7   12   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     E      37     E      37     14   16   31     8   12   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     I      38     I      38     14   16   31     8   12   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     A      39     A      39     14   16   31     8   12   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     D      40     D      40     14   16   31     8   12   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     R      41     R      41     14   16   31     8   12   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     T      42     T      42     14   16   31     8   12   13   14   15   17   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     L      43     L      43     14   16   31     8   12   13   14   15   17   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     R      44     R      44     14   16   31     8   12   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     A      45     A      45     14   16   31     6   11   13   14   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     G      46     G      46      5   16   31     3    5    8   10   13   18   24   25   30   32   34   34   37   40   44   48   50   52   54   55 
LCS_GDT     G      47     G      47      5   11   31     3    4    8   10   13   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     P      48     P      48      5   11   31     2    5    8   10   13   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     A      49     A      49      5   11   31     3    5    8   10   13   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     L      50     L      50      3   11   31     3    3    6   10   15   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     L      51     L      51      3   11   31     3    5    8   10   13   17   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     F      52     F      52      3   11   31     3    3    8   10   13   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     E      53     E      53      3   11   31     3    4    7   10   12   15   20   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     N      54     N      54      3    8   31     3    3    6    7    8   10   16   24   27   32   34   35   37   39   44   48   50   52   54   55 
LCS_GDT     P      55     P      55      4    8   31     3    4    5    6    7   12   15   20   25   27   31   33   38   40   44   48   50   52   54   55 
LCS_GDT     K      56     K      56      4    8   29     3    4    5    6    7    8   11   13   16   21   25   30   33   36   41   44   50   52   54   55 
LCS_GDT     G      57     G      57      4    8   28     4    4    5    6    7    8   10   11   12   14   19   21   22   27   30   34   36   41   46   49 
LCS_GDT     Y      58     Y      58      4    8   15     4    4    5    6    7    8   10   11   20   21   21   26   27   31   36   38   39   42   49   51 
LCS_GDT     S      59     S      59      4    8   20     4    4    4    7   11   13   17   19   20   22   24   27   29   32   36   40   45   49   52   55 
LCS_GDT     M      60     M      60      4    8   21     4    4    5    6    7   10   12   17   19   22   26   29   32   37   40   43   47   52   54   55 
LCS_GDT     P      61     P      61      3    7   21     3    3    4    9   13   18   24   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     V      62     V      62      3    5   21     1    3    4    6    8   11   15   17   30   31   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     L      63     L      63      3    5   21     1    3    4    6    8   12   22   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     C      64     C      64      3    5   21     1    3    4    6    8   11   17   20   28   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     N      65     N      65      3    5   21     3    3    4    5    7   11   15   16   19   24   29   34   37   38   40   43   45   49   54   55 
LCS_GDT     L      66     L      66      4    5   21     3    4    6    7    8   16   23   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     F      67     F      67      4    5   21     3    4    4    5    8   16   23   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     G      68     G      68      4   10   21     3    4   11   11   11   17   23   25   30   32   34   35   37   40   44   48   50   52   54   55 
LCS_GDT     T      69     T      69      9   10   21     3    4    8    9   10   13   22   25   30   32   34   35   38   40   44   48   50   52   54   55 
LCS_GDT     P      70     P      70      9   10   21     8    8   11   11   11   12   15   16   20   27   31   35   38   40   44   48   50   52   54   55 
LCS_GDT     K      71     K      71      9   10   21     8    8   11   11   11   12   13   14   18   18   20   24   29   35   44   48   50   52   54   55 
LCS_GDT     R      72     R      72      9   10   21     8    8   11   11   11   12   15   16   18   22   27   32   38   40   44   48   50   52   54   55 
LCS_GDT     V      73     V      73      9   10   24     8    8   11   11   11   12   15   16   19   24   29   32   38   40   44   48   50   52   54   55 
LCS_GDT     A      74     A      74      9   10   24     8    8   11   11   11   12   15   16   18   22   27   31   38   40   44   48   50   52   54   55 
LCS_GDT     M      75     M      75      9   10   31     8    8   11   11   11   12   15   16   18   20   24   29   31   36   42   48   50   52   54   55 
LCS_GDT     G      76     G      76      9   10   33     8    8   11   11   11   12   15   17   19   22   27   29   31   39   42   48   50   52   54   55 
LCS_GDT     M      77     M      77      9   11   33     8    8   11   11   11   12   15   18   19   22   27   29   35   39   42   48   50   52   54   55 
LCS_GDT     G      78     G      78      3   11   33     3    3    6    8    9   11   15   17   19   22   27   29   31   34   36   38   41   44   48   51 
LCS_GDT     Q      79     Q      79      3   17   33     3    3    7   10   15   17   17   18   19   22   24   29   31   34   36   38   39   43   48   51 
LCS_GDT     E      80     E      80      5   17   33     3    3    7    8   13   17   17   18   19   21   24   27   29   32   36   38   39   42   44   48 
LCS_GDT     D      81     D      81      5   17   33     3    4    9   15   15   17   17   18   19   22   27   29   31   34   36   38   39   42   44   48 
LCS_GDT     V      82     V      82      5   17   33     4    4   10   15   15   17   17   18   19   22   27   29   31   34   36   38   39   42   44   48 
LCS_GDT     S      83     S      83     13   17   33     4    4   10   15   15   17   17   18   19   22   27   29   31   34   37   43   45   48   52   55 
LCS_GDT     A      84     A      84     13   17   33     4   11   12   15   15   17   17   18   19   22   27   29   31   36   42   45   48   52   54   55 
LCS_GDT     L      85     L      85     13   17   33     8   11   12   15   15   17   17   18   19   22   27   29   35   40   44   48   50   52   54   55 
LCS_GDT     R      86     R      86     13   17   33    10   11   12   15   15   17   17   18   19   22   27   29   37   40   44   48   50   52   54   55 
LCS_GDT     E      87     E      87     13   17   33    10   11   12   15   15   17   17   18   19   22   27   31   38   40   44   48   50   52   54   55 
LCS_GDT     V      88     V      88     13   17   33    10   11   12   15   15   17   17   18   19   22   27   29   37   40   44   48   50   52   54   55 
LCS_GDT     G      89     G      89     13   17   33    10   11   12   15   15   17   17   18   19   22   27   29   31   40   41   48   50   52   54   55 
LCS_GDT     K      90     K      90     13   17   33    10   11   12   15   15   17   17   18   19   20   24   29   31   34   37   42   45   49   53   55 
LCS_GDT     L      91     L      91     13   17   33    10   11   12   15   15   17   17   18   19   22   27   29   31   34   36   38   43   47   47   50 
LCS_GDT     L      92     L      92     13   17   33    10   11   12   15   15   17   17   18   19   22   27   29   31   34   35   36   37   38   40   44 
LCS_GDT     A      93     A      93     13   17   33    10   11   12   15   15   17   17   18   19   19   20   21   22   27   32   35   37   38   40   42 
LCS_GDT     F      94     F      94     13   17   33    10   11   12   15   15   17   17   18   19   19   21   24   28   32   34   36   37   38   40   42 
LCS_GDT     L      95     L      95     13   17   33    10   11   12   15   15   17   17   18   19   22   27   29   31   34   35   36   37   38   40   42 
LCS_GDT     K      96     K      96      3   16   33     3    3    3    4    7    9   13   16   19   22   27   29   31   34   35   36   37   38   40   42 
LCS_GDT     D     314     D     314      3    5   33     3    3    3    4    4    8   11   16   21   26   31   33   38   40   44   48   50   52   54   55 
LCS_GDT     A     315     A     315      3    5   33     3    3    6    7    8   10   13   24   26   29   31   35   38   40   44   48   50   52   54   55 
LCS_GDT     I     316     I     316      4    7   33     3    3    6    6    7   11   15   16   19   22   28   31   38   40   44   48   50   52   54   55 
LCS_GDT     Y     317     Y     317      5    7   33     3    4    6    6    6   10   12   15   19   22   27   32   35   38   41   45   50   51   54   55 
LCS_GDT     H     318     H     318      5    7   33     4    4    6    6    7    8   12   15   19   22   27   29   31   34   35   36   39   40   42   50 
LCS_GDT     S     319     S     319      5    7   33     4    4    6    6    7    9   12   15   19   22   27   29   31   34   35   36   37   38   40   42 
LCS_GDT     T     320     T     320      5    7   33     4    4    6    6    7    9   12   15   19   22   27   29   31   34   35   36   38   39   42   45 
LCS_GDT     Y     321     Y     321      5    7   33     4    4    6    6    6    7   10   15   19   22   27   29   31   34   35   37   38   42   43   47 
LCS_GDT     T     322     T     322      3    7   33     3    3    3    4    7    9   12   15   19   22   27   29   31   34   35   37   39   42   43   48 
LCS_GDT     G     323     G     323      3    6   33     3    3    3    4    7    9   12   17   19   22   27   29   31   34   35   37   39   42   44   48 
LCS_GDT     R     324     R     324      4    6   33     3    4    4    5    6    9   12   17   19   22   27   29   31   34   35   37   38   42   43   45 
LCS_GDT     P     325     P     325      4    6   33     3    4    4    5    7    9   12   17   19   22   27   29   31   34   35   37   38   42   44   48 
LCS_GDT     P     326     P     326      4    6   30     3    4    4    7    9   11   15   18   21   22   26   29   31   34   35   36   37   38   40   42 
LCS_GDT     D     327     D     327      4   19   30     3    4    4    7   10   15   15   19   21   21   26   29   31   34   35   36   37   38   40   42 
LCS_GDT     E     328     E     328     15   20   24     7   12   14   16   18   20   20   20   21   21   21   22   23   23   28   35   36   38   40   42 
LCS_GDT     P     329     P     329     15   20   24     9   13   16   18   19   20   20   20   21   21   21   22   23   23   23   24   35   36   39   42 
LCS_GDT     A     330     A     330     15   20   24     9   13   16   18   19   20   20   20   21   21   21   22   23   23   25   30   36   38   40   42 
LCS_GDT     V     331     V     331     15   20   24     9   13   16   18   19   20   20   20   21   21   21   22   23   23   27   32   36   38   40   42 
LCS_GDT     L     332     L     332     15   20   24     9   13   16   18   19   20   20   20   21   21   21   22   23   23   23   27   31   37   39   42 
LCS_GDT     G     333     G     333     15   20   24     9   13   16   18   19   20   20   20   21   21   21   22   23   23   23   24   27   30   33   37 
LCS_GDT     V     334     V     334     15   20   24     9   13   16   18   19   20   20   20   21   21   21   22   23   23   23   24   27   30   33   37 
LCS_GDT     A     335     A     335     15   20   24     9   13   16   18   19   20   20   20   21   21   21   22   23   23   24   25   27   30   33   37 
LCS_GDT     L     336     L     336     15   20   24     9   13   16   18   19   20   20   20   21   21   21   22   23   23   24   25   27   30   33   37 
LCS_GDT     N     337     N     337     15   20   24     9   13   16   18   19   20   20   20   21   21   21   22   23   23   24   25   27   30   33   37 
LCS_GDT     E     338     E     338     15   20   24     4   13   16   18   19   20   20   20   21   21   21   22   23   23   24   25   27   30   33   37 
LCS_GDT     V     339     V     339     15   20   24     5   13   16   18   19   20   20   20   21   21   21   22   23   23   24   25   27   30   33   37 
LCS_GDT     F     340     F     340     15   20   24     7   13   16   18   19   20   20   20   21   21   21   22   23   23   24   25   27   30   33   37 
LCS_GDT     V     341     V     341     15   20   24     7   13   16   18   19   20   20   20   21   21   21   22   23   23   24   25   27   29   33   37 
LCS_GDT     P     342     P     342     15   20   24     7   10   13   18   19   20   20   20   21   21   21   22   23   23   23   24   25   29   30   31 
LCS_GDT     I     343     I     343     13   20   24     7   10   16   18   19   20   20   20   21   21   21   22   23   23   23   24   25   26   30   31 
LCS_GDT     L     344     L     344     13   20   24     7   10   16   18   19   20   20   20   21   21   21   22   23   23   23   24   25   29   30   31 
LCS_GDT     Q     345     Q     345     13   20   24     7   10   16   18   19   20   20   20   21   21   21   22   23   23   23   24   24   26   27   29 
LCS_GDT     K     346     K     346     12   20   24     7   10   13   18   19   20   20   20   21   21   21   22   23   23   23   24   24   26   27   29 
LCS_GDT     Q     347     Q     347     12   20   24     3    8   13   16   19   20   20   20   21   21   21   22   23   23   23   24   24   24   25   26 
LCS_AVERAGE  LCS_A:  13.36  (   7.00   10.68   22.41 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     16     18     19     20     24     25     30     32     34     35     38     40     44     48     50     52     54     55 
GDT PERCENT_CA   8.06  10.48  12.90  14.52  15.32  16.13  19.35  20.16  24.19  25.81  27.42  28.23  30.65  32.26  35.48  38.71  40.32  41.94  43.55  44.35
GDT RMS_LOCAL    0.19   0.60   1.12   1.31   1.41   1.51   2.51   2.59   3.07   3.27   3.44   3.69   4.71   4.98   5.23   5.55   5.67   5.97   6.12   6.23
GDT RMS_ALL_CA  32.19  31.89  32.94  33.38  33.92  33.66  25.43  25.19  24.08  23.86  23.87  23.22  23.07  23.35  23.26  23.57  23.50  23.56  23.53  23.53

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         39.200
LGA    D       8      D       8         34.962
LGA    L       9      L       9         28.642
LGA    R      10      R      10         30.106
LGA    D      11      D      11         35.609
LGA    F      12      F      12         31.931
LGA    L      13      L      13         27.677
LGA    T      14      T      14         33.294
LGA    L      15      L      15         35.257
LGA    L      16      L      16         29.369
LGA    E      17      E      17         29.921
LGA    Q      18      Q      18         35.732
LGA    Q      19      Q      19         35.728
LGA    G      20      G      20         29.221
LGA    E      21      E      21         27.499
LGA    L      22      L      22         22.839
LGA    K      23      K      23         16.492
LGA    R      24      R      24         15.671
LGA    I      25      I      25         11.206
LGA    T      26      T      26         14.705
LGA    L      27      L      27         15.075
LGA    P      28      P      28         11.151
LGA    V      29      V      29          6.260
LGA    D      30      D      30          1.924
LGA    P      31      P      31          2.504
LGA    H      32      H      32          3.481
LGA    L      33      L      33          3.286
LGA    E      34      E      34          3.952
LGA    I      35      I      35          2.166
LGA    T      36      T      36          0.749
LGA    E      37      E      37          2.535
LGA    I      38      I      38          3.419
LGA    A      39      A      39          2.465
LGA    D      40      D      40          1.042
LGA    R      41      R      41          2.245
LGA    T      42      T      42          3.408
LGA    L      43      L      43          3.412
LGA    R      44      R      44          1.662
LGA    A      45      A      45          0.610
LGA    G      46      G      46          2.932
LGA    G      47      G      47          2.998
LGA    P      48      P      48          2.265
LGA    A      49      A      49          1.522
LGA    L      50      L      50          3.240
LGA    L      51      L      51          2.826
LGA    F      52      F      52          1.788
LGA    E      53      E      53          4.372
LGA    N      54      N      54          5.266
LGA    P      55      P      55          8.119
LGA    K      56      K      56         13.334
LGA    G      57      G      57         19.263
LGA    Y      58      Y      58         16.031
LGA    S      59      S      59         13.780
LGA    M      60      M      60          9.627
LGA    P      61      P      61          2.957
LGA    V      62      V      62          5.832
LGA    L      63      L      63          5.245
LGA    C      64      C      64          6.504
LGA    N      65      N      65          8.827
LGA    L      66      L      66          5.364
LGA    F      67      F      67          5.165
LGA    G      68      G      68          3.870
LGA    T      69      T      69          6.316
LGA    P      70      P      70         10.141
LGA    K      71      K      71         15.628
LGA    R      72      R      72         13.796
LGA    V      73      V      73         11.949
LGA    A      74      A      74         16.732
LGA    M      75      M      75         20.784
LGA    G      76      G      76         19.540
LGA    M      77      M      77         21.249
LGA    G      78      G      78         27.093
LGA    Q      79      Q      79         29.554
LGA    E      80      E      80         33.240
LGA    D      81      D      81         34.864
LGA    V      82      V      82         31.584
LGA    S      83      S      83         30.941
LGA    A      84      A      84         29.511
LGA    L      85      L      85         25.289
LGA    R      86      R      86         24.882
LGA    E      87      E      87         23.905
LGA    V      88      V      88         20.754
LGA    G      89      G      89         19.175
LGA    K      90      K      90         19.360
LGA    L      91      L      91         18.179
LGA    L      92      L      92         16.842
LGA    A      93      A      93         17.334
LGA    F      94      F      94         16.868
LGA    L      95      L      95         18.368
LGA    K      96      K      96         18.276
LGA    D     314      D     314          8.333
LGA    A     315      A     315          8.543
LGA    I     316      I     316         11.335
LGA    Y     317      Y     317         11.134
LGA    H     318      H     318         14.238
LGA    S     319      S     319         16.178
LGA    T     320      T     320         18.970
LGA    Y     321      Y     321         23.086
LGA    T     322      T     322         27.974
LGA    G     323      G     323         29.916
LGA    R     324      R     324         34.004
LGA    P     325      P     325         30.813
LGA    P     326      P     326         31.365
LGA    D     327      D     327         31.374
LGA    E     328      E     328         30.440
LGA    P     329      P     329         30.274
LGA    A     330      A     330         35.888
LGA    V     331      V     331         34.563
LGA    L     332      L     332         30.687
LGA    G     333      G     333         35.405
LGA    V     334      V     334         39.135
LGA    A     335      A     335         35.150
LGA    L     336      L     336         35.663
LGA    N     337      N     337         41.640
LGA    E     338      E     338         41.638
LGA    V     339      V     339         39.516
LGA    F     340      F     340         44.426
LGA    V     341      V     341         48.918
LGA    P     342      P     342         47.598
LGA    I     343      I     343         48.453
LGA    L     344      L     344         53.952
LGA    Q     345      Q     345         56.143
LGA    K     346      K     346         55.655
LGA    Q     347      Q     347         60.012

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  124  124    4.0     25    2.59    20.968    18.350     0.928

LGA_LOCAL      RMSD =  2.594  Number of atoms =   25  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 25.069  Number of atoms =  124 
Std_ALL_ATOMS  RMSD = 17.491  (standard rmsd on all 124 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.887943 * X  +   0.100217 * Y  +   0.448903 * Z  +  75.099861
  Y_new =  -0.207620 * X  +  -0.958217 * Y  +  -0.196757 * Z  +  61.485550
  Z_new =   0.410428 * X  +  -0.267911 * Y  +   0.871649 * Z  +  95.206032 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.298196    2.843397  [ DEG:   -17.0854    162.9146 ]
  Theta =  -0.422923   -2.718669  [ DEG:   -24.2317   -155.7683 ]
  Phi   =  -2.911897    0.229695  [ DEG:  -166.8394     13.1606 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS393_4-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS393_4-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  124  124   4.0   25   2.59  18.350    17.49
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS393_4-D1
PFRMAT TS
TARGET T0356
MODEL 4
PARENT N/A
ATOM      7  CA  ASN     7      63.334  64.614 113.672  1.00 25.00           C
ATOM      8  CA  ASP     8      61.146  67.724 113.210  1.00 25.00           C
ATOM      9  CA  LEU     9      61.210  67.235 109.412  1.00 25.00           C
ATOM     10  CA  ARG    10      60.205  63.565 109.843  1.00 25.00           C
ATOM     11  CA  ASP    11      57.322  64.599 112.142  1.00 25.00           C
ATOM     12  CA  PHE    12      56.159  67.180 109.563  1.00 25.00           C
ATOM     13  CA  LEU    13      56.278  64.519 106.811  1.00 25.00           C
ATOM     14  CA  THR    14      54.231  62.132 108.996  1.00 25.00           C
ATOM     15  CA  LEU    15      51.653  64.891 109.640  1.00 25.00           C
ATOM     16  CA  LEU    16      51.427  65.589 105.882  1.00 25.00           C
ATOM     17  CA  GLU    17      50.913  61.857 105.193  1.00 25.00           C
ATOM     18  CA  GLN    18      48.150  61.725 107.842  1.00 25.00           C
ATOM     19  CA  GLN    19      46.102  60.302 104.895  1.00 25.00           C
ATOM     20  CA  GLY    20      45.093  63.491 103.017  1.00 25.00           C
ATOM     21  CA  GLU    21      46.021  66.423 105.159  1.00 25.00           C
ATOM     22  CA  LEU    22      47.447  69.972 104.741  1.00 25.00           C
ATOM     23  CA  LYS    23      49.828  69.462 101.821  1.00 25.00           C
ATOM     24  CA  ARG    24      52.260  66.707 100.837  1.00 25.00           C
ATOM     25  CA  ILE    25      55.569  65.416  99.642  1.00 25.00           C
ATOM     26  CA  THR    26      56.282  62.541 101.999  1.00 25.00           C
ATOM     27  CA  LEU    27      56.263  58.934 103.292  1.00 25.00           C
ATOM     28  CA  PRO    28      60.062  58.998 103.699  1.00 25.00           C
ATOM     29  CA  VAL    29      61.559  62.501 104.333  1.00 25.00           C
ATOM     30  CA  ASP    30      62.600  65.252 101.908  1.00 25.00           C
ATOM     31  CA  PRO    31      64.067  65.546  98.409  1.00 25.00           C
ATOM     32  CA  HIS    32      62.779  62.828  96.039  1.00 25.00           C
ATOM     33  CA  LEU    33      59.201  63.415  97.271  1.00 25.00           C
ATOM     34  CA  GLU    34      59.598  67.182  96.707  1.00 25.00           C
ATOM     35  CA  ILE    35      60.905  66.540  93.166  1.00 25.00           C
ATOM     36  CA  THR    36      57.921  64.248  92.453  1.00 25.00           C
ATOM     37  CA  GLU    37      55.517  66.938  93.737  1.00 25.00           C
ATOM     38  CA  ILE    38      57.204  69.548  91.498  1.00 25.00           C
ATOM     39  CA  ALA    39      56.889  67.204  88.486  1.00 25.00           C
ATOM     40  CA  ASP    40      53.179  66.661  89.265  1.00 25.00           C
ATOM     41  CA  ARG    41      52.648  70.445  89.501  1.00 25.00           C
ATOM     42  CA  THR    42      54.410  70.927  86.134  1.00 25.00           C
ATOM     43  CA  LEU    43      52.194  68.226  84.563  1.00 25.00           C
ATOM     44  CA  ARG    44      49.070  69.936  85.969  1.00 25.00           C
ATOM     45  CA  ALA    45      49.547  73.552  84.969  1.00 25.00           C
ATOM     46  CA  GLY    46      51.427  76.507  86.491  1.00 25.00           C
ATOM     47  CA  GLY    47      53.168  75.876  89.796  1.00 25.00           C
ATOM     48  CA  PRO    48      56.876  75.900  88.877  1.00 25.00           C
ATOM     49  CA  ALA    49      60.327  74.252  88.417  1.00 25.00           C
ATOM     50  CA  LEU    50      63.404  72.515  89.917  1.00 25.00           C
ATOM     51  CA  LEU    51      63.690  71.778  93.648  1.00 25.00           C
ATOM     52  CA  PHE    52      64.345  70.915  97.335  1.00 25.00           C
ATOM     53  CA  GLU    53      64.556  70.311 101.084  1.00 25.00           C
ATOM     54  CA  ASN    54      60.857  69.416 100.899  1.00 25.00           C
ATOM     55  CA  PRO    55      58.899  72.644 100.939  1.00 25.00           C
ATOM     56  CA  LYS    56      56.918  75.844 100.997  1.00 25.00           C
ATOM     57  CA  GLY    57      57.117  78.428  98.233  1.00 25.00           C
ATOM     58  CA  TYR    58      60.638  77.646  97.134  1.00 25.00           C
ATOM     59  CA  SER    59      64.170  79.164  97.058  1.00 25.00           C
ATOM     60  CA  MET    60      66.055  76.529  95.000  1.00 25.00           C
ATOM     61  CA  PRO    61      68.743  74.617  96.895  1.00 25.00           C
ATOM     62  CA  VAL    62      71.477  72.033  97.625  1.00 25.00           C
ATOM     63  CA  LEU    63      70.184  70.265  94.508  1.00 25.00           C
ATOM     64  CA  CYS    64      69.062  67.985  91.714  1.00 25.00           C
ATOM     65  CA  ASN    65      69.123  71.257  89.678  1.00 25.00           C
ATOM     66  CA  LEU    66      68.305  71.504  85.978  1.00 25.00           C
ATOM     67  CA  PHE    67      64.707  70.631  85.085  1.00 25.00           C
ATOM     68  CA  GLY    68      62.048  73.130  83.844  1.00 25.00           C
ATOM     69  CA  THR    69      61.246  70.364  81.348  1.00 25.00           C
ATOM     70  CA  PRO    70      64.507  68.987  80.004  1.00 25.00           C
ATOM     71  CA  LYS    71      67.160  67.139  82.057  1.00 25.00           C
ATOM     72  CA  ARG    72      64.429  65.660  84.300  1.00 25.00           C
ATOM     73  CA  VAL    73      62.475  64.521  81.210  1.00 25.00           C
ATOM     74  CA  ALA    74      65.633  62.892  79.783  1.00 25.00           C
ATOM     75  CA  MET    75      66.240  61.095  83.111  1.00 25.00           C
ATOM     76  CA  GLY    76      62.621  59.845  83.125  1.00 25.00           C
ATOM     77  CA  MET    77      63.020  58.573  79.534  1.00 25.00           C
ATOM     78  CA  GLY    78      60.794  56.469  77.303  1.00 25.00           C
ATOM     79  CA  GLN    79      58.556  54.296  75.147  1.00 25.00           C
ATOM     80  CA  GLU    80      59.773  50.718  75.287  1.00 25.00           C
ATOM     81  CA  ASP    81      62.358  48.125  74.223  1.00 25.00           C
ATOM     82  CA  VAL    82      65.841  48.771  72.911  1.00 25.00           C
ATOM     83  CA  SER    83      65.731  50.580  69.537  1.00 25.00           C
ATOM     84  CA  ALA    84      62.394  52.203  70.488  1.00 25.00           C
ATOM     85  CA  LEU    85      63.870  53.333  73.836  1.00 25.00           C
ATOM     86  CA  ARG    86      66.901  54.818  72.027  1.00 25.00           C
ATOM     87  CA  GLU    87      64.580  56.674  69.612  1.00 25.00           C
ATOM     88  CA  VAL    88      62.562  58.045  72.564  1.00 25.00           C
ATOM     89  CA  GLY    89      65.791  59.215  74.259  1.00 25.00           C
ATOM     90  CA  LYS    90      66.894  60.939  71.022  1.00 25.00           C
ATOM     91  CA  LEU    91      63.489  62.672  70.755  1.00 25.00           C
ATOM     92  CA  LEU    92      63.776  63.847  74.389  1.00 25.00           C
ATOM     93  CA  ALA    93      67.288  65.209  73.698  1.00 25.00           C
ATOM     94  CA  PHE    94      65.989  67.062  70.609  1.00 25.00           C
ATOM     95  CA  LEU    95      63.135  68.560  72.677  1.00 25.00           C
ATOM     96  CA  LYS    96      61.272  70.836  70.189  1.00 25.00           C
ATOM    314  CA  ASP   314      71.846  68.891  97.855  1.00 25.00           C
ATOM    315  CA  ALA   315      74.525  66.631  99.198  1.00 25.00           C
ATOM    316  CA  ILE   316      74.941  62.878  99.075  1.00 25.00           C
ATOM    317  CA  TYR   317      77.073  60.665  96.792  1.00 25.00           C
ATOM    318  CA  HIS   318      80.124  61.723  94.739  1.00 25.00           C
ATOM    319  CA  SER   319      82.531  63.207  92.213  1.00 25.00           C
ATOM    320  CA  THR   320      82.635  65.799  89.493  1.00 25.00           C
ATOM    321  CA  TYR   321      84.184  66.853  86.138  1.00 25.00           C
ATOM    322  CA  THR   322      86.956  64.316  86.883  1.00 25.00           C
ATOM    323  CA  GLY   323      85.631  62.372  83.908  1.00 25.00           C
ATOM    324  CA  ARG   324      86.372  61.567  80.263  1.00 25.00           C
ATOM    325  CA  PRO   325      83.361  59.493  79.188  1.00 25.00           C
ATOM    326  CA  PRO   326      83.233  60.925  75.651  1.00 25.00           C
ATOM    327  CA  ASP   327      86.230  58.608  75.155  1.00 25.00           C
ATOM    328  CA  GLU   328      86.620  55.216  76.688  1.00 25.00           C
ATOM    329  CA  PRO   329      88.225  53.008  79.374  1.00 25.00           C
ATOM    330  CA  ALA   330      91.573  54.802  78.882  1.00 25.00           C
ATOM    331  CA  VAL   331      89.830  58.196  79.208  1.00 25.00           C
ATOM    332  CA  LEU   332      88.113  57.034  82.427  1.00 25.00           C
ATOM    333  CA  GLY   333      91.478  55.853  83.825  1.00 25.00           C
ATOM    334  CA  VAL   334      93.052  59.236  82.960  1.00 25.00           C
ATOM    335  CA  ALA   335      90.167  61.052  84.704  1.00 25.00           C
ATOM    336  CA  LEU   336      90.620  58.848  87.803  1.00 25.00           C
ATOM    337  CA  ASN   337      94.374  59.607  87.824  1.00 25.00           C
ATOM    338  CA  GLU   338      93.642  63.357  87.558  1.00 25.00           C
ATOM    339  CA  VAL   339      91.169  63.106  90.471  1.00 25.00           C
ATOM    340  CA  PHE   340      93.784  61.253  92.566  1.00 25.00           C
ATOM    341  CA  VAL   341      96.376  63.958  91.766  1.00 25.00           C
ATOM    342  CA  PRO   342      93.884  66.681  92.790  1.00 25.00           C
ATOM    343  CA  ILE   343      93.184  64.840  96.074  1.00 25.00           C
ATOM    344  CA  LEU   344      96.944  64.567  96.751  1.00 25.00           C
ATOM    345  CA  GLN   345      97.365  68.312  96.072  1.00 25.00           C
ATOM    346  CA  LYS   346      94.484  69.095  98.472  1.00 25.00           C
ATOM    347  CA  GLN   347      96.090  66.887 101.158  1.00 25.00           C
TER
END
