
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  122 (  122),  selected  122 , name T0356AL316_4-D1
# Molecule2: number of CA atoms  124 (  963),  selected  122 , name T0356_D1.pdb
# PARAMETERS: T0356AL316_4-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        22 - 42          4.96    50.15
  LONGEST_CONTINUOUS_SEGMENT:    21        23 - 43          4.96    49.50
  LCS_AVERAGE:     13.17

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13         8 - 22          1.49    45.97
  LCS_AVERAGE:      5.38

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    12         8 - 19          0.44    44.85
  LCS_AVERAGE:      4.08

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      0    0   15     0    0    0    4    4    4    4    4    4    4    4    5    6    7   19   23   24   24   25   25 
LCS_GDT     D       8     D       8     12   13   18     6   12   12   12   12   12   13   14   14   14   14   16   18   18   18   19   22   23   27   28 
LCS_GDT     L       9     L       9     12   13   19    11   12   12   12   12   12   13   14   14   14   14   16   18   18   18   20   26   27   29   32 
LCS_GDT     R      10     R      10     12   13   19    11   12   12   12   12   12   13   14   14   14   14   16   19   22   26   27   30   31   31   33 
LCS_GDT     D      11     D      11     12   13   19    11   12   12   12   12   12   13   14   14   14   15   18   21   24   27   28   30   31   31   33 
LCS_GDT     F      12     F      12     12   13   19    11   12   12   12   12   12   13   14   14   14   15   17   21   24   27   28   30   31   31   33 
LCS_GDT     L      13     L      13     12   13   19    11   12   12   12   12   12   13   14   14   14   15   19   22   24   27   28   30   31   31   33 
LCS_GDT     T      14     T      14     12   13   19    11   12   12   12   12   12   13   14   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     L      15     L      15     12   13   19    11   12   12   12   12   12   13   14   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     L      16     L      16     12   13   19    11   12   12   12   12   12   13   14   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     E      17     E      17     12   13   19    11   12   12   12   12   12   13   14   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     Q      18     Q      18     12   13   19    11   12   12   12   12   12   13   14   14   17   17   18   22   22   24   27   28   29   30   32 
LCS_GDT     Q      19     Q      19     12   13   19    11   12   12   12   12   12   13   14   14   14   14   18   21   21   21   21   26   27   30   32 
LCS_GDT     L      22     L      22      3   13   21     1    3    4    6    8   11   13   14   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     K      23     K      23      3    3   21     0    3    3    5    8    9   11   14   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     R      24     R      24      3    4   21     3    3    3    3    4    7    8   10   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     I      25     I      25      3    4   21     3    3    3    4    5    7    8   10   13   16   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     T      26     T      26      3    4   21     3    3    3    7    9   10   11   13   14   16   17   18   21   23   27   28   30   31   31   33 
LCS_GDT     L      27     L      27      3    4   21     3    5    5    5    5    7    8   10   13   16   17   18   20   24   27   28   30   31   31   33 
LCS_GDT     P      28     P      28      3    4   21     1    5    5    7    8   10   11   13   14   16   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     V      29     V      29      3    3   21     1    5    5    8    8   10   11   13   14   16   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     D      30     D      30      5    6   21     4    4    6    8    8    9   11   13   14   16   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     P      31     P      31      5    6   21     3    4    5    6    6    8   10   13   14   15   17   20   22   23   27   28   29   31   31   33 
LCS_GDT     H      32     H      32      5    6   21     3    4    5    6    6    7   10   11   13   15   16   17   19   20   22   25   26   28   30   31 
LCS_GDT     L      33     L      33      5    6   21     3    3    5    6    6    7   10   13   14   15   17   18   22   24   27   28   30   31   31   33 
LCS_GDT     E      34     E      34      6    9   21     4    5    6    8    9   10   11   13   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     I      35     I      35      6    9   21     4    5    6    8    9   10   11   13   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     T      36     T      36      6    9   21     4    5    6    8    9   10   11   13   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     E      37     E      37      6    9   21     4    5    6    8    9   10   11   13   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     I      38     I      38      6    9   21     4    5    6    8    9   10   11   13   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     A      39     A      39      6    9   21     4    5    6    8    9   10   11   13   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     D      40     D      40      4    9   21     4    5    5    7    9   10   11   13   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     R      41     R      41      4    9   21     4    4    5    7    9   10   11   13   15   17   17   20   22   24   27   28   30   31   31   33 
LCS_GDT     T      42     T      42      3    9   21     1    3    3    4    7    9   11   13   13   16   17   18   21   23   27   28   30   31   31   33 
LCS_GDT     L      43     L      43      3    3   21     0    3    3    3    4    5    7    8   10   17   17   18   21   24   27   28   30   31   31   33 
LCS_GDT     R      44     R      44      3    9   15     3    3    3    3    8   11   13   14   15   15   15   21   22   22   22   24   27   27   30   31 
LCS_GDT     A      45     A      45      4    9   15     3    3    4    7    8    9    9   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     G      46     G      46      5    9   15     4    4    6    7    9   11   13   14   15   19   21   21   22   23   24   25   27   28   30   31 
LCS_GDT     G      47     G      47      5    9   15     4    4    6    7    9   11   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     P      48     P      48      5    9   15     4    4    6    7    9   11   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     A      49     A      49      5    9   15     4    4    6    7    9   11   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     L      50     L      50      5    9   15     3    4    5    7    9   11   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     L      51     L      51      4    9   15     3    4    6    7    9   11   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     F      52     F      52      4    9   15     4    4    6    7    8   11   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     E      53     E      53      4    9   15     4    4    5    6    9   11   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     N      54     N      54      5    8   15     4    5    5    6    7    8    8   13   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     P      55     P      55      5    8   15     4    5    5    6    9   11   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     K      56     K      56      5    8   15     3    5    5    6    9   11   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     G      57     G      57      5    8   15     3    5    5    6    7   10   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     Y      58     Y      58      5    8   15     3    5    5    6    6   10   13   14   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     S      59     S      59      3    3    9     3    3    3    3    3    4    7    9   11   11   12   13   14   15   15   16   17   18   19   19 
LCS_GDT     M      60     M      60      3    3    9     3    3    3    3    4    5    7    9   11   11   12   13   14   15   15   16   17   18   19   20 
LCS_GDT     P      61     P      61      3    3    9     3    3    3    3    3    4    4    6    7   10   11   12   14   15   15   16   17   18   19   20 
LCS_GDT     V      62     V      62      3    3    9     3    3    3    3    3    4    6    6    7    8    8   11   12   13   15   16   17   18   19   20 
LCS_GDT     L      63     L      63      3    5    9     3    3    3    4    5    5    6    6    7    8    8    9   11   13   14   16   17   18   19   20 
LCS_GDT     C      64     C      64      3    5    9     3    3    3    4    5    5    6    6    7    8    8    9    9    9   13   15   17   18   19   20 
LCS_GDT     N      65     N      65      3    5    9     3    3    3    4    5    5    6    6    7    8    8    9    9    9    9    9    9    9   10   11 
LCS_GDT     L      66     L      66      3    5    9     3    3    3    4    5    5    6    6    7    8    8    9    9    9    9    9    9    9   10   11 
LCS_GDT     F      67     F      67      3    5    9     3    3    3    4    5    5    6    6    7    8    8    9    9    9    9    9    9    9    9   11 
LCS_GDT     G      68     G      68      3   11   14     0    3    3    3    5    7   10   11   12   15   17   18   20   22   24   26   27   28   30   31 
LCS_GDT     T      69     T      69     10   11   14    10   10   10   10   10   10   10   11   13   15   17   18   20   22   24   26   27   28   30   31 
LCS_GDT     P      70     P      70     10   11   14    10   10   10   10   10   10   10   11   12   13   17   18   21   23   24   26   27   28   30   31 
LCS_GDT     K      71     K      71     10   11   14    10   10   10   10   10   10   10   11   12   13   14   17   20   22   24   26   27   28   30   31 
LCS_GDT     R      72     R      72     10   11   15    10   10   10   10   10   10   10   11   13   15   17   18   22   23   24   26   27   28   30   31 
LCS_GDT     V      73     V      73     10   11   17    10   10   10   10   10   10   10   11   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     A      74     A      74     10   11   20    10   10   10   10   10   10   10   11   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     M      75     M      75     10   11   20    10   10   10   10   10   10   10   11   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     G      76     G      76     10   11   20    10   10   10   10   10   10   10   11   15   19   21   21   22   23   24   26   27   28   29   31 
LCS_GDT     M      77     M      77     10   11   20    10   10   10   10   10   10   10   12   15   19   21   21   22   23   24   26   27   28   29   30 
LCS_GDT     G      78     G      78     10   11   20    10   10   10   10   10   10   10   12   15   19   21   21   22   23   24   26   27   28   29   31 
LCS_GDT     Q      79     Q      79      4   11   20     3    4    5    5    7    7   10   12   15   19   21   21   22   23   24   26   27   28   30   31 
LCS_GDT     E      80     E      80      4    5   20     3    4    5    5    7    7   10   12   15   17   17   18   19   21   24   26   27   28   30   31 
LCS_GDT     D      81     D      81      4    5   20     3    3    5    5    7    7   10   11   15   17   17   18   19   21   23   23   24   27   30   31 
LCS_GDT     V      82     V      82      4    5   20     3    3    4    4    5    7    9   12   15   17   17   18   19   21   23   23   24   25   26   27 
LCS_GDT     S      83     S      83      4    5   20     3    3    4    4    5    7   10   12   15   17   17   18   19   23   23   24   26   29   30   33 
LCS_GDT     A      84     A      84      4    4   20     3    3    4    4    7    7   10   12   15   17   17   18   19   21   23   24   25   29   30   33 
LCS_GDT     L      85     L      85      3    4   20     3    3    4    4    7    7   10   12   15   17   17   18   19   22   24   27   30   31   31   33 
LCS_GDT     R      86     R      86      3    4   20     3    3    4    4    5    7   10   12   15   17   17   18   19   22   23   27   30   31   31   33 
LCS_GDT     E      87     E      87      4    4   20     3    4    4    4    5    7    9   12   15   17   17   18   19   21   23   23   24   26   29   32 
LCS_GDT     V      88     V      88      4    4   20     3    4    4    4    5    7    9   12   15   17   17   18   19   21   23   23   26   28   30   31 
LCS_GDT     G      89     G      89      4    4   20     3    4    4    4    4    7    9   12   15   17   17   18   19   21   23   23   27   27   29   32 
LCS_GDT     K      90     K      90      4    4   20     3    4    4    4    4    7    9   12   15   17   17   18   19   21   23   23   27   27   29   32 
LCS_GDT     L      91     L      91      3    4   20     3    3    3    4    6    7    8   12   15   17   17   18   19   21   23   23   27   27   28   32 
LCS_GDT     L      92     L      92      3    4   20     0    3    3    4    4    4    8   10   15   17   17   18   19   21   23   23   27   27   28   32 
LCS_GDT     A      93     A      93      3    3   20     0    3    3    3    4    4    5    7   10   13   15   18   19   21   23   23   24   25   28   28 
LCS_GDT     F      94     F      94      3    3   20     0    3    3    4    4    5    6    8   10   12   14   16   17   19   21   22   24   26   29   31 
LCS_GDT     L      95     L      95      3    3    7     1    3    4    4    4    6    7    9   10   13   14   17   17   20   22   24   26   28   30   31 
LCS_GDT     K      96     K      96      3    3    7     2    3    4    4    4    6    7    9   10   13   14   17   19   21   24   26   27   28   30   31 
LCS_GDT     D     314     D     314      3    3    7     3    3    3    4    4    4    4    4    5    7    8    8   10   11   13   16   20   25   26   27 
LCS_GDT     A     315     A     315      3    3    7     3    3    3    4    4    4    6    8    9   12   16   18   19   21   23   23   24   25   26   27 
LCS_GDT     I     316     I     316      3    3    7     3    3    3    4    4    4    5   10   10   12   16   18   19   21   23   23   24   25   26   27 
LCS_GDT     Y     317     Y     317      3    3   11     3    3    3    3    4    4    4    6    7   10   12   13   14   14   15   17   18   21   21   22 
LCS_GDT     H     318     H     318      3    3   11     3    3    3    3    4    4    5    7    7   10   12   13   14   15   15   17   19   21   21   22 
LCS_GDT     S     319     S     319      3    3   11     3    3    3    3    4    6    6    7    7   10   12   13   14   16   17   18   19   21   21   22 
LCS_GDT     T     320     T     320      3    3   11     0    3    4    4    5    6    6    7    8   10   12   13   14   16   17   18   19   21   21   22 
LCS_GDT     Y     321     Y     321      3    3   11     1    3    3    4    4    6    7    7    8   10   12   13   14   16   17   18   19   21   21   22 
LCS_GDT     T     322     T     322      3    5   12     1    3    4    4    5    6    7    8    8   10   12   13   14   16   17   18   19   21   21   22 
LCS_GDT     G     323     G     323      3    5   13     3    3    4    4    5    6    7    8    8   10   12   13   14   16   17   18   19   21   21   22 
LCS_GDT     R     324     R     324      3    5   15     3    3    4    5    5    6    7    8    9   10   11   13   14   15   17   17   19   21   21   22 
LCS_GDT     P     325     P     325      3    5   15     3    3    4    5    5    6    7    8    9   10   12   13   14   16   17   18   19   21   21   22 
LCS_GDT     P     326     P     326      3    5   15     3    3    3    4    5    6    7    7    9   10   12   13   14   16   17   18   19   21   21   22 
LCS_GDT     D     327     D     327      3    5   15     3    3    3    4    4    6    7    7    9   10   11   13   14   15   16   18   19   21   21   22 
LCS_GDT     E     328     E     328      3    5   15     3    3    3    4    5    6    7    7    9   10   11   13   13   15   16   16   17   18   19   20 
LCS_GDT     P     329     P     329      3    4   15     3    3    3    4    5    6    7    7    9   10   11   13   14   15   16   16   17   19   20   22 
LCS_GDT     A     330     A     330      3    4   15     3    3    3    3    3    6    7    7    9   10   12   13   14   16   17   18   19   21   21   22 
LCS_GDT     V     331     V     331      3    3   15     1    3    4    5    5    5    7    8    9   10   12   13   14   16   17   18   19   21   21   22 
LCS_GDT     L     332     L     332      3    3   15     1    3    4    5    5    5    7    8    9   10   12   13   14   15   17   18   19   21   21   22 
LCS_GDT     G     333     G     333      4    4   15     1    3    4    5    5    6    9    9    9   10   12   13   15   16   17   18   19   21   21   22 
LCS_GDT     V     334     V     334      4    4   15     3    3    4    4    5    6    9   10   10   11   13   14   15   16   17   18   19   21   21   22 
LCS_GDT     A     335     A     335      4    4   15     3    3    4    4    5    6    9   10   10   11   13   14   15   16   17   18   19   21   21   22 
LCS_GDT     L     336     L     336      4    4   15     3    3    5    6    7    7    9   10   11   12   13   14   15   16   17   18   19   21   21   22 
LCS_GDT     N     337     N     337      3    3   15     3    3    3    3    5    6    8   10   11   12   12   14   15   16   17   18   19   21   21   22 
LCS_GDT     E     338     E     338      3    3   15     3    3    3    3    3    5    8   10   11   12   13   14   15   16   17   18   19   21   21   22 
LCS_GDT     V     339     V     339      3    6   15     3    3    3    3    3    6    8    9   11   12   13   14   15   16   17   18   19   21   21   22 
LCS_GDT     F     340     F     340      5    6   15     4    5    5    6    7    7    9   10   11   12   13   14   15   15   15   15   17   20   20   22 
LCS_GDT     V     341     V     341      5    6   15     4    5    5    6    7    7    9   10   11   12   13   14   15   15   15   15   17   20   20   22 
LCS_GDT     P     342     P     342      5    6   15     4    5    5    6    7    7    9   10   11   12   13   14   15   15   15   15   15   15   15   17 
LCS_GDT     I     343     I     343      5    6   15     4    5    5    6    7    7    9   10   11   12   13   14   15   15   15   15   15   15   15   17 
LCS_GDT     L     344     L     344      5    6   15     3    5    5    6    7    7    9   10   11   12   13   14   15   15   15   15   15   15   15   17 
LCS_GDT     Q     345     Q     345      3    6   15     3    3    4    6    7    7    7   10   11   12   13   14   15   15   15   15   15   15   15   17 
LCS_GDT     K     346     K     346      3    4   15     3    3    3    3    4    6    7   10   11   12   13   14   15   15   15   15   15   15   15   17 
LCS_GDT     Q     347     Q     347      3    3   15     3    3    3    3    4    4    7   10   10   12   13   14   15   15   15   15   15   15   15   17 
LCS_AVERAGE  LCS_A:   7.54  (   4.08    5.38   13.17 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     12     12     12     12     12     13     14     15     19     21     21     22     24     27     28     30     31     31     33 
GDT PERCENT_CA   8.87   9.68   9.68   9.68   9.68   9.68  10.48  11.29  12.10  15.32  16.94  16.94  17.74  19.35  21.77  22.58  24.19  25.00  25.00  26.61
GDT RMS_LOCAL    0.31   0.44   0.44   0.44   0.44   0.44   1.49   2.25   2.89   3.89   4.07   4.07   4.27   5.16   5.43   5.56   6.00   6.13   6.13   6.55
GDT RMS_ALL_CA  44.78  44.85  44.85  44.85  44.85  44.85  45.97  45.52  35.51  33.25  33.07  33.07  32.97  43.52  44.73  44.24  42.76  42.92  42.92  43.59

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         17.511
LGA    D       8      D       8          3.379
LGA    L       9      L       9          2.599
LGA    R      10      R      10          2.332
LGA    D      11      D      11          0.566
LGA    F      12      F      12          0.563
LGA    L      13      L      13          2.131
LGA    T      14      T      14          1.466
LGA    L      15      L      15          1.757
LGA    L      16      L      16          2.588
LGA    E      17      E      17          3.504
LGA    Q      18      Q      18          3.948
LGA    Q      19      Q      19          3.834
LGA    L      22      L      22          1.822
LGA    K      23      K      23          3.291
LGA    R      24      R      24          9.505
LGA    I      25      I      25         11.891
LGA    T      26      T      26         11.761
LGA    L      27      L      27         13.908
LGA    P      28      P      28         20.382
LGA    V      29      V      29         17.830
LGA    D      30      D      30         20.167
LGA    P      31      P      31         25.436
LGA    H      32      H      32         27.267
LGA    L      33      L      33         21.604
LGA    E      34      E      34         18.611
LGA    I      35      I      35         16.208
LGA    T      36      T      36         20.953
LGA    E      37      E      37         17.302
LGA    I      38      I      38         12.055
LGA    A      39      A      39         13.525
LGA    D      40      D      40         13.736
LGA    R      41      R      41          9.764
LGA    T      42      T      42         10.363
LGA    L      43      L      43          9.112
LGA    R      44      R      44         34.626
LGA    A      45      A      45         37.613
LGA    G      46      G      46         33.712
LGA    G      47      G      47         29.599
LGA    P      48      P      48         25.415
LGA    A      49      A      49         22.833
LGA    L      50      L      50         21.991
LGA    L      51      L      51         25.486
LGA    F      52      F      52         28.077
LGA    E      53      E      53         27.384
LGA    N      54      N      54         29.113
LGA    P      55      P      55         30.793
LGA    K      56      K      56         34.906
LGA    G      57      G      57         37.125
LGA    Y      58      Y      58         34.672
LGA    S      59      S      59         41.764
LGA    M      60      M      60         40.377
LGA    P      61      P      61         42.405
LGA    V      62      V      62         37.900
LGA    L      63      L      63         33.977
LGA    C      64      C      64         32.996
LGA    N      65      N      65         32.887
LGA    L      66      L      66         32.250
LGA    F      67      F      67         29.153
LGA    G      68      G      68         20.328
LGA    T      69      T      69         26.385
LGA    P      70      P      70         26.609
LGA    K      71      K      71         28.061
LGA    R      72      R      72         29.188
LGA    V      73      V      73         28.824
LGA    A      74      A      74         30.718
LGA    M      75      M      75         32.765
LGA    G      76      G      76         32.972
LGA    M      77      M      77         34.564
LGA    G      78      G      78         37.163
LGA    Q      79      Q      79         41.116
LGA    E      80      E      80         43.673
LGA    D      81      D      81         46.503
LGA    V      82      V      82         43.885
LGA    S      83      S      83         43.357
LGA    A      84      A      84         41.259
LGA    L      85      L      85         34.678
LGA    R      86      R      86         34.434
LGA    E      87      E      87         36.452
LGA    V      88      V      88         35.788
LGA    G      89      G      89         32.597
LGA    K      90      K      90         32.618
LGA    L      91      L      91         31.019
LGA    L      92      L      92         26.168
LGA    A      93      A      93         38.004
LGA    F      94      F      94         42.941
LGA    L      95      L      95         44.300
LGA    K      96      K      96         43.866
LGA    D     314      D     314         35.008
LGA    A     315      A     315         31.752
LGA    I     316      I     316         34.912
LGA    Y     317      Y     317         67.294
LGA    H     318      H     318         66.623
LGA    S     319      S     319         68.697
LGA    T     320      T     320         73.782
LGA    Y     321      Y     321         72.907
LGA    T     322      T     322         72.351
LGA    G     323      G     323         78.290
LGA    R     324      R     324         83.033
LGA    P     325      P     325         82.571
LGA    P     326      P     326         85.291
LGA    D     327      D     327         81.395
LGA    E     328      E     328         81.326
LGA    P     329      P     329         79.184
LGA    A     330      A     330         79.968
LGA    V     331      V     331         80.797
LGA    L     332      L     332         77.968
LGA    G     333      G     333         74.897
LGA    V     334      V     334         78.769
LGA    A     335      A     335         76.190
LGA    L     336      L     336         70.573
LGA    N     337      N     337         68.705
LGA    E     338      E     338         68.821
LGA    V     339      V     339         65.033
LGA    F     340      F     340         70.119
LGA    V     341      V     341         71.677
LGA    P     342      P     342         70.667
LGA    I     343      I     343         70.668
LGA    L     344      L     344         74.101
LGA    Q     345      Q     345         76.790
LGA    K     346      K     346         72.814
LGA    Q     347      Q     347         73.815

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  122  124    4.0     14    2.25    13.306    11.026     0.595

LGA_LOCAL      RMSD =  2.253  Number of atoms =   14  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 44.941  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 32.005  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.698726 * X  +  -0.684892 * Y  +   0.206651 * Z  + -64.038658
  Y_new =   0.488415 * X  +   0.245636 * Y  +  -0.837325 * Z  + 229.336792
  Z_new =   0.522717 * X  +   0.685992 * Y  +   0.506144 * Z  + -120.663834 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.935131   -2.206461  [ DEG:    53.5791   -126.4209 ]
  Theta =  -0.550035   -2.591558  [ DEG:   -31.5147   -148.4854 ]
  Phi   =   0.610060   -2.531532  [ DEG:    34.9539   -145.0461 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356AL316_4-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356AL316_4-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  122  124   4.0   14   2.25  11.026    32.01
REMARK  ---------------------------------------------------------- 
MOLECULE T0356AL316_4-D1
REMARK Aligment from pdb entry: 2cse_U
ATOM      7  CA  ASN     7      83.655  65.822  79.176  1.00  0.00              
ATOM      8  CA  ASP     8      75.301  81.315  81.123  1.00  0.00              
ATOM      9  CA  LEU     9      74.297  78.527  83.468  1.00  0.00              
ATOM     10  CA  ARG    10      74.900  80.333  86.766  1.00  0.00              
ATOM     11  CA  ASP    11      72.868  83.271  85.432  1.00  0.00              
ATOM     12  CA  PHE    12      70.161  80.917  84.259  1.00  0.00              
ATOM     13  CA  LEU    13      69.784  79.540  87.789  1.00  0.00              
ATOM     14  CA  THR    14      69.058  83.009  89.167  1.00  0.00              
ATOM     15  CA  LEU    15      66.702  83.878  86.308  1.00  0.00              
ATOM     16  CA  LEU    16      64.726  80.682  86.916  1.00  0.00              
ATOM     17  CA  GLU    17      64.730  80.876  90.698  1.00  0.00              
ATOM     18  CA  GLN    18      63.229  84.379  90.631  1.00  0.00              
ATOM     19  CA  GLN    19      60.436  83.776  88.148  1.00  0.00              
ATOM     20  CA  LEU    22      59.527  80.472  89.753  1.00  0.00              
ATOM     21  CA  LYS    23      59.195  82.255  93.068  1.00  0.00              
ATOM     22  CA  ARG    24      56.717  84.782  91.751  1.00  0.00              
ATOM     23  CA  ILE    25      54.611  81.965  90.353  1.00  0.00              
ATOM     24  CA  THR    26      54.718  80.058  93.631  1.00  0.00              
ATOM     25  CA  LEU    27      52.943  82.816  95.532  1.00  0.00              
ATOM     26  CA  PRO    28      50.439  83.139  92.704  1.00  0.00              
ATOM     27  CA  VAL    29      49.577  79.516  93.401  1.00  0.00              
ATOM     28  CA  ASP    30      49.468  79.888  97.170  1.00  0.00              
ATOM     29  CA  PRO    31      47.094  82.809  96.831  1.00  0.00              
ATOM     30  CA  HIS    32      44.439  80.496  95.386  1.00  0.00              
ATOM     31  CA  LEU    33      45.445  77.389  97.319  1.00  0.00              
ATOM     32  CA  GLU    34      46.617  78.324 100.827  1.00  0.00              
ATOM     33  CA  ILE    35      49.112  75.797 102.120  1.00  0.00              
ATOM     34  CA  THR    36      47.220  75.714 105.393  1.00  0.00              
ATOM     35  CA  GLU    37      44.451  73.773 103.657  1.00  0.00              
ATOM     36  CA  ILE    38      45.773  72.268 100.439  1.00  0.00              
ATOM     37  CA  ALA    39      49.220  71.007 101.475  1.00  0.00              
ATOM     38  CA  ASP    40      48.262  67.340 101.109  1.00  0.00              
ATOM     39  CA  ARG    41      45.952  67.601  98.092  1.00  0.00              
ATOM     40  CA  THR    42      46.889  65.946  94.799  1.00  0.00              
ATOM     41  CA  LEU    43      48.030  68.142  91.915  1.00  0.00              
ATOM     42  CA  ARG    44      81.723  69.167  70.191  1.00  0.00              
ATOM     43  CA  ALA    45      82.878  65.545  70.203  1.00  0.00              
ATOM     44  CA  GLY    46      82.840  65.722  73.987  1.00  0.00              
ATOM     45  CA  GLY    47      79.470  67.480  74.274  1.00  0.00              
ATOM     46  CA  PRO    48      76.556  65.384  75.553  1.00  0.00              
ATOM     47  CA  ALA    49      73.970  64.005  73.101  1.00  0.00              
ATOM     48  CA  LEU    50      70.516  65.540  73.513  1.00  0.00              
ATOM     49  CA  LEU    51      68.612  63.112  71.297  1.00  0.00              
ATOM     50  CA  PHE    52      66.620  65.906  69.706  1.00  0.00              
ATOM     51  CA  GLU    53      64.776  66.201  73.002  1.00  0.00              
ATOM     52  CA  ASN    54      66.153  69.765  73.114  1.00  0.00              
ATOM     53  CA  PRO    55      63.966  71.141  70.325  1.00  0.00              
ATOM     54  CA  LYS    56      60.417  72.489  69.905  1.00  0.00              
ATOM     55  CA  GLY    57      58.105  69.543  69.392  1.00  0.00              
ATOM     56  CA  TYR    58      59.911  66.229  69.130  1.00  0.00              
ATOM     57  CA  SER    59      42.981  51.910  78.108  1.00  0.00              
ATOM     58  CA  MET    60      45.076  50.639  75.205  1.00  0.00              
ATOM     59  CA  PRO    61      42.172  49.158  73.235  1.00  0.00              
ATOM     60  CA  VAL    62      41.126  52.779  72.728  1.00  0.00              
ATOM     61  CA  LEU    63      44.524  54.196  71.819  1.00  0.00              
ATOM     62  CA  CYS    64      44.885  51.419  69.296  1.00  0.00              
ATOM     63  CA  ASN    65      41.532  52.187  67.681  1.00  0.00              
ATOM     64  CA  LEU    66      42.478  55.827  67.813  1.00  0.00              
ATOM     65  CA  PHE    67      45.309  55.190  65.378  1.00  0.00              
ATOM     66  CA  GLY    68      66.246  54.623  76.067  1.00  0.00              
ATOM     67  CA  THR    69      67.816  51.498  74.629  1.00  0.00              
ATOM     68  CA  PRO    70      71.206  52.644  75.925  1.00  0.00              
ATOM     69  CA  LYS    71      69.754  53.598  79.277  1.00  0.00              
ATOM     70  CA  ARG    72      68.659  49.980  79.852  1.00  0.00              
ATOM     71  CA  VAL    73      71.805  48.418  78.477  1.00  0.00              
ATOM     72  CA  ALA    74      73.365  50.467  81.232  1.00  0.00              
ATOM     73  CA  MET    75      70.987  49.523  84.024  1.00  0.00              
ATOM     74  CA  GLY    76      71.370  45.853  83.103  1.00  0.00              
ATOM     75  CA  MET    77      74.959  46.123  84.276  1.00  0.00              
ATOM     76  CA  GLY    78      74.478  48.021  87.518  1.00  0.00              
ATOM     77  CA  GLN    79      71.712  45.600  88.395  1.00  0.00              
ATOM     78  CA  GLU    80      71.728  44.655  92.095  1.00  0.00              
ATOM     79  CA  ASP    81      68.965  42.374  93.495  1.00  0.00              
ATOM     80  CA  VAL    82      68.203  44.612  96.476  1.00  0.00              
ATOM     81  CA  SER    83      68.538  47.980  94.697  1.00  0.00              
ATOM     82  CA  ALA    84      65.284  49.231  93.070  1.00  0.00              
ATOM     83  CA  LEU    85      65.059  51.128  89.792  1.00  0.00              
ATOM     84  CA  ARG    86      62.433  53.487  88.411  1.00  0.00              
ATOM     85  CA  GLU    87      61.262  51.072  85.698  1.00  0.00              
ATOM     86  CA  VAL    88      62.166  47.474  85.000  1.00  0.00              
ATOM     87  CA  GLY    89      62.179  47.898  81.221  1.00  0.00              
ATOM     88  CA  LYS    90      63.290  51.338  80.040  1.00  0.00              
ATOM     89  CA  LEU    91      63.137  50.512  76.323  1.00  0.00              
ATOM     90  CA  LEU    92      60.486  52.112  74.158  1.00  0.00              
ATOM     91  CA  ALA    93      52.392  44.245  76.941  1.00  0.00              
ATOM     92  CA  PHE    94      54.807  41.390  77.503  1.00  0.00              
ATOM     93  CA  LEU    95      54.654  37.733  76.534  1.00  0.00              
ATOM     94  CA  LYS    96      57.080  34.987  77.554  1.00  0.00              
ATOM    297  CA  ASP   314      86.777  47.025  78.932  1.00  0.00              
ATOM    298  CA  ALA   315      89.128  49.493  77.304  1.00  0.00              
ATOM    299  CA  ILE   316      92.890  49.134  76.953  1.00  0.00              
ATOM    300  CA  TYR   317     122.486  27.292  78.217  1.00  0.00              
ATOM    301  CA  HIS   318     119.821  27.475  75.511  1.00  0.00              
ATOM    302  CA  SER   319     122.421  28.564  72.998  1.00  0.00              
ATOM    303  CA  THR   320     124.570  25.507  73.597  1.00  0.00              
ATOM    304  CA  TYR   321     121.576  23.236  73.119  1.00  0.00              
ATOM    305  CA  THR   322     120.720  24.684  69.711  1.00  0.00              
ATOM    306  CA  GLY   323     124.320  24.364  68.497  1.00  0.00              
ATOM    307  CA  ARG   324     124.896  20.862  69.885  1.00  0.00              
ATOM    308  CA  PRO   325     121.997  19.444  67.864  1.00  0.00              
ATOM    309  CA  PRO   326     122.057  18.970  64.073  1.00  0.00              
ATOM    310  CA  ASP   327     119.493  17.963  61.455  1.00  0.00              
ATOM    311  CA  GLU   328     117.894  14.610  62.152  1.00  0.00              
ATOM    312  CA  PRO   329     119.357  14.105  65.623  1.00  0.00              
ATOM    313  CA  ALA   330     116.752  12.774  68.036  1.00  0.00              
ATOM    314  CA  VAL   331     116.357  14.656  71.293  1.00  0.00              
ATOM    315  CA  LEU   332     115.357  13.845  74.850  1.00  0.00              
ATOM    316  CA  GLY   333     114.930  16.931  77.014  1.00  0.00              
ATOM    317  CA  VAL   334     114.243  16.412  80.710  1.00  0.00              
ATOM    318  CA  ALA   335     112.634  19.136  82.800  1.00  0.00              
ATOM    319  CA  LEU   336     111.152  20.952  79.822  1.00  0.00              
ATOM    320  CA  ASN   337     108.911  23.849  80.763  1.00  0.00              
ATOM    321  CA  GLU   338     105.245  24.051  79.717  1.00  0.00              
ATOM    322  CA  VAL   339     106.118  26.633  77.051  1.00  0.00              
ATOM    323  CA  PHE   340     113.323  23.893  73.276  1.00  0.00              
ATOM    324  CA  VAL   341     111.099  23.786  70.214  1.00  0.00              
ATOM    325  CA  PRO   342     112.627  27.093  69.068  1.00  0.00              
ATOM    326  CA  ILE   343     116.191  25.860  69.607  1.00  0.00              
ATOM    327  CA  LEU   344     116.561  22.452  67.982  1.00  0.00              
ATOM    328  CA  GLN   345     116.092  22.028  64.186  1.00  0.00              
ATOM    329  CA  LYS   346     112.584  21.533  62.812  1.00  0.00              
ATOM    330  CA  GLN   347     113.783  18.233  61.325  1.00  0.00              
END
