
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  122 (  122),  selected  122 , name T0342TS168_5-D1
# Molecule2: number of CA atoms  122 (  967),  selected  122 , name T0342_D1.pdb
# PARAMETERS: T0342TS168_5-D1.T0342_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31       100 - 130         4.93    18.54
  LCS_AVERAGE:     19.20

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    11        37 - 47          1.68    24.77
  LONGEST_CONTINUOUS_SEGMENT:    11        88 - 98          1.16    21.55
  LCS_AVERAGE:      6.83

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    10        89 - 98          0.96    22.27
  LCS_AVERAGE:      4.13

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     E      14     E      14      0    9   16     0    0    3    7   10   12   13   14   15   17   19   20   25   29   33   37   38   42   42   47 
LCS_GDT     E      15     E      15      4    9   16     0    3    4    6   10   12   13   14   15   17   19   24   27   29   33   37   38   42   42   47 
LCS_GDT     S      16     S      16      4    9   16     3    3    4    7   10   12   13   14   15   17   19   24   27   29   33   37   38   42   44   47 
LCS_GDT     F      17     F      17      4    9   16     3    4    4    7   10   12   13   14   15   17   19   24   27   29   33   44   48   50   57   61 
LCS_GDT     L      18     L      18      4    9   18     3    4    5    7   10   12   13   14   17   21   26   33   40   47   54   56   60   61   63   64 
LCS_GDT     Y      19     Y      19      4    9   19     4    4    5    7   10   12   17   25   28   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     F      20     F      20      4    9   19     4    4    6    7   14   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     A      21     A      21      4    9   19     4    4    6    7   10   12   15   19   20   26   30   37   39   45   49   56   60   61   63   64 
LCS_GDT     Y      22     Y      22      4    9   19     4    4    5    7    9   12   14   18   21   25   29   34   36   38   40   43   47   48   54   59 
LCS_GDT     G      23     G      23      3    8   19     3    3    5    7    9   12   13   18   21   25   29   34   36   38   40   43   47   48   50   53 
LCS_GDT     S      24     S      24      4    7   19     3    3    4    5    8   10   14   18   21   25   28   34   36   38   40   43   47   48   50   53 
LCS_GDT     N      25     N      25      4    6   19     3    3    5    5    6   10   14   16   18   23   25   34   36   38   40   43   47   48   50   53 
LCS_GDT     L      26     L      26      4    6   19     3    3    4    5    7    9   12   14   18   24   29   34   36   38   40   43   47   48   50   53 
LCS_GDT     L      27     L      27      4    8   19     1    3    4    5   10   11   13   17   21   24   29   34   36   38   40   43   47   48   50   53 
LCS_GDT     T      28     T      28      7    8   19     6    6    7    8   10   11   14   17   21   25   29   34   36   38   40   43   47   48   50   53 
LCS_GDT     E      29     E      29      7    8   19     6    6    7    8   10   11   12   18   21   25   27   32   36   38   40   43   47   48   50   53 
LCS_GDT     R      30     R      30      7    8   19     6    6    7    8   10   11   12   14   16   20   22   24   29   33   37   41   47   48   50   52 
LCS_GDT     I      31     I      31      7    8   19     6    6    7    8   10   11   12   14   16   21   25   32   36   38   40   43   47   48   50   53 
LCS_GDT     H      32     H      32      7    8   19     6    6    7    8   10   11   12   14   16   18   22   24   28   30   35   39   43   47   49   52 
LCS_GDT     L      33     L      33      7    8   19     6    6    7    8   10   11   12   14   16   20   22   24   25   29   35   39   43   45   47   50 
LCS_GDT     R      34     R      34      7    8   19     3    4    7    8   10   11   12   14   16   20   22   24   25   29   31   39   43   45   46   50 
LCS_GDT     N      35     N      35      4    8   19     3    3    6    8    9   11   12   14   15   20   22   24   26   32   35   39   43   45   47   50 
LCS_GDT     P      36     P      36      5    7   19     3    4    5    7    9   10   12   12   14   17   19   24   27   32   35   39   43   45   47   50 
LCS_GDT     S      37     S      37      5   11   19     3    4    5    9   10   11   11   12   14   17   19   24   27   32   35   39   43   45   47   50 
LCS_GDT     A      38     A      38      5   11   19     3    4    6    9   10   11   12   12   14   17   19   24   29   32   36   41   45   48   49   52 
LCS_GDT     A      39     A      39      8   11   19     3    6    8    9   10   11   12   12   14   15   18   21   26   30   38   41   47   48   50   53 
LCS_GDT     F      40     F      40      8   11   19     3    6    8    9   10   11   12   12   14   15   19   21   27   30   34   38   42   45   50   53 
LCS_GDT     F      41     F      41      8   11   19     3    6    8    9   10   11   12   16   16   17   20   24   27   30   35   38   41   44   50   52 
LCS_GDT     C      42     C      42      8   11   19     3    6    8    9   10   11   12   12   14   16   18   19   22   24   28   30   33   36   41   47 
LCS_GDT     V      43     V      43      8   11   19     3    6    8    9   10   11   12   12   14   16   18   19   22   23   26   30   31   36   42   47 
LCS_GDT     A      44     A      44      8   11   19     3    6    8    9   10   11   12   12   15   16   18   21   23   28   31   33   35   36   55   62 
LCS_GDT     R      45     R      45      8   11   18     3    6    8    9   10   11   12   13   16   20   22   24   25   28   31   34   37   41   46   51 
LCS_GDT     L      46     L      46      8   11   18     3    6    8    9   10   11   12   14   14   17   22   24   26   30   33   39   43   45   51   56 
LCS_GDT     Q      47     Q      47      4   11   18     3    4    6    7   10   11   12   14   14   16   17   20   23   28   32   37   40   43   46   50 
LCS_GDT     D      48     D      48      4    8   18     3    3    5    7    9   10   11   14   14   16   17   20   25   29   32   37   38   42   44   50 
LCS_GDT     F      49     F      49      4    8   19     0    3    5    7    9   12   13   14   15   17   19   24   27   29   33   37   38   42   44   49 
LCS_GDT     K      50     K      50      4    8   19     2    4    5    6    9   10   10   14   14   16   17   20   22   29   32   37   38   42   44   49 
LCS_GDT     L      51     L      51      4    6   19     3    4    5    5    5    6    8   12   14   15   17   19   26   30   33   38   43   45   48   52 
LCS_GDT     D      52     D      52      4    6   20     3    4    5    5    8   12   13   16   16   16   18   18   23   29   32   37   40   44   47   50 
LCS_GDT     F      53     F      53      4    8   20     3    4    5    8   10   12   13   16   16   17   18   24   27   32   35   39   43   45   47   50 
LCS_GDT     G      54     G      54      4    8   21     3    3    5    8   10   12   13   16   16   16   18   18   23   27   32   37   43   45   47   50 
LCS_GDT     N      55     N      55      4    8   21     3    4    5    8   10   12   13   16   16   16   18   18   20   22   25   31   35   38   43   49 
LCS_GDT     S      56     S      56      4    8   21     3    4    5    8   10   12   13   16   16   16   18   18   20   22   23   28   28   35   43   49 
LCS_GDT     Q      57     Q      57      4    8   21     3    4    5    8   10   12   13   16   16   16   18   18   20   22   23   28   28   35   43   49 
LCS_GDT     G      58     G      58      4    8   21     3    4    5    8   10   12   13   16   16   16   18   18   19   22   26   28   32   40   43   49 
LCS_GDT     K      59     K      59      3    8   21     3    3    5    8   10   12   13   16   16   16   18   18   21   24   26   31   35   38   43   49 
LCS_GDT     T      60     T      60      4    8   21     3    4    4    6    7    8   10   11   14   16   18   19   22   26   29   34   40   43   48   52 
LCS_GDT     S      61     S      61      4    7   21     3    4    5    8   10   12   13   16   16   18   23   25   29   32   38   40   47   48   50   53 
LCS_GDT     Q      62     Q      62      4    6   21     3    4    4    8   10   12   13   16   17   22   26   30   33   36   38   42   47   48   50   53 
LCS_GDT     T      63     T      63      4    6   21     3    4    4    7    9   10   15   20   22   24   26   30   34   37   41   43   46   48   50   53 
LCS_GDT     W      64     W      64      4    7   21     4    4    5    8   10   13   16   20   22   24   32   34   36   38   41   43   47   48   50   53 
LCS_GDT     H      65     H      65      4    7   21     4    4    5    6    8   10   14   18   21   25   29   34   36   38   40   43   47   48   50   53 
LCS_GDT     G      66     G      66      4    7   21     4    4    5    8   10   12   14   17   21   25   29   34   36   38   40   43   47   48   50   53 
LCS_GDT     G      67     G      67      4    7   21     4    4    5    6    9   12   14   19   22   25   29   34   36   38   41   43   47   48   50   53 
LCS_GDT     I      68     I      68      4    8   21     3    4    7    9   12   14   24   27   30   32   35   37   39   44   48   50   54   56   60   63 
LCS_GDT     A      69     A      69      4    8   23     3    4    9   15   17   20   24   27   30   33   36   38   42   45   51   56   60   61   63   64 
LCS_GDT     T      70     T      70      3    8   23     3    5    9   15   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     I      71     I      71      3    8   23     3    4    6   13   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     F      72     F      72      3    8   23     3    3    6   15   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     Q      73     Q      73      3    8   23     3    3    5    7   15   20   24   27   30   33   36   38   42   45   54   56   60   61   63   64 
LCS_GDT     S      74     S      74      4    8   23     3    3    8    9   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     P      75     P      75      4    8   23     3    3    6    9   13   15   22   27   30   33   36   37   42   44   49   56   60   61   63   64 
LCS_GDT     G      76     G      76      4    7   24     3    4    5    7   12   20   23   27   30   33   36   38   42   46   54   56   60   61   63   64 
LCS_GDT     D      77     D      77      4    7   24     3    4    9   15   16   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     E      78     E      78      4    8   24     3    4    5    7   10   12   16   21   27   30   35   38   42   47   54   56   60   61   63   64 
LCS_GDT     V      79     V      79      4    8   24     3    4    5    8   10   12   15   19   21   25   29   34   39   47   54   56   60   61   63   64 
LCS_GDT     W      80     W      80      3    8   24     3    3    5    7   10   12   15   19   20   24   32   34   39   47   54   56   60   61   63   64 
LCS_GDT     G      81     G      81      4    8   24     2    4    5    6    8   10   12   27   30   32   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     V      82     V      82      4    8   24     2    4    5    7    9   11   13   15   18   21   25   34   40   47   54   56   60   61   63   64 
LCS_GDT     V      83     V      83      4    8   24     3    3    6    7    9   12   14   16   18   21   22   28   39   47   54   56   60   61   63   64 
LCS_GDT     W      84     W      84      4    8   24     3    4    5    7    9   12   14   16   18   21   22   24   29   31   41   48   51   58   63   64 
LCS_GDT     K      85     K      85      4    8   24     3    4    5    7    8   10   11   16   16   17   22   23   26   31   41   48   51   56   62   64 
LCS_GDT     M      86     M      86      4    8   24     3    4    5    7    8   10   11   16   18   21   25   33   39   46   54   56   60   61   63   64 
LCS_GDT     N      87     N      87      4    8   24     3    4    5    7    9   12   14   16   18   23   29   35   40   47   54   56   60   61   63   64 
LCS_GDT     K      88     K      88      4   11   24     4    4    8   11   13   15   16   18   18   22   24   32   38   47   54   56   60   61   63   64 
LCS_GDT     S      89     S      89     10   11   24     4    4    8   11   13   15   16   18   18   22   26   33   39   47   54   56   60   61   63   64 
LCS_GDT     N      90     N      90     10   11   24     8    8    9   11   13   15   16   18   18   22   26   32   39   46   54   56   60   61   63   64 
LCS_GDT     L      91     L      91     10   11   24     8    8    9   11   13   15   16   18   18   23   29   35   40   47   54   56   60   61   63   64 
LCS_GDT     N      92     N      92     10   11   24     8    8    9   11   13   15   16   18   25   30   33   38   42   47   54   56   60   61   63   64 
LCS_GDT     S      93     S      93     10   11   24     8    8    9   11   13   15   16   18   19   26   33   35   40   47   54   56   60   61   63   64 
LCS_GDT     L      94     L      94     10   11   24     8    8    9   11   13   15   16   18   19   22   28   35   40   47   54   56   60   61   63   64 
LCS_GDT     D      95     D      95     10   11   24     8    8    9   11   13   15   16   18   26   30   33   38   42   47   54   56   60   61   63   64 
LCS_GDT     E      96     E      96     10   11   24     8    8    9   11   13   15   16   18   21   26   31   36   41   47   54   56   60   61   63   64 
LCS_GDT     Q      97     Q      97     10   11   24     8    8    9   11   13   15   16   18   18   21   22   24   35   42   48   53   60   61   63   64 
LCS_GDT     E      98     E      98     10   11   24     3    5    9   11   13   15   16   18   18   22   25   34   39   47   54   56   60   61   63   64 
LCS_GDT     G      99     G      99      3    8   30     3    3    3    5    6   11   12   15   20   29   33   37   42   47   54   56   60   61   63   64 
LCS_GDT     V     100     V     100      5    8   31     3    5    6    7   10   12   14   18   25   30   33   37   42   47   54   56   60   61   63   64 
LCS_GDT     K     101     K     101      5    8   31     3    5    6    7    9    9   13   18   24   29   32   35   39   42   44   51   59   61   63   64 
LCS_GDT     S     102     S     102      5    8   31     3    5    6    7    7    9   16   18   24   29   32   35   39   41   44   46   48   52   56   59 
LCS_GDT     G     103     G     103      5    8   31     3    5    6    7    8    9   16   18   24   29   32   35   39   41   44   46   49   52   57   60 
LCS_GDT     M     104     M     104      5    8   31     3    5    5   15   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     Y     105     Y     105      4    7   31     3    4    9   15   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     V     106     V     106      4    7   31     3    4    8   15   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     V     107     V     107      4    9   31     3    4    5    6    9   19   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     I     108     I     108      3    9   31     3    3    5    9   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     E     109     E     109      3    9   31     3    3    4   10   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     V     110     V     110      6    9   31     3    6    6   15   16   19   24   27   30   32   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     K     111     K     111      6    9   31     3    6    9   15   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     V     112     V     112      6    9   31     4    6    9   15   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     A     113     A     113      6    9   31     4    6    6   10   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     T     114     T     114      6    9   31     4    6    9   15   17   20   24   27   30   32   33   37   42   47   54   56   60   61   63   64 
LCS_GDT     Q     115     Q     115      6    9   31     4    6    9   15   17   20   24   27   30   32   33   38   42   47   54   56   60   61   63   64 
LCS_GDT     E     116     E     116      4    8   31     3    3    5    6    9   17   22   25   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     G     117     G     117      4    6   31     3    3    5    5    8   14   18   24   28   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     K     118     K     118      5    7   31     3    4    5    7   10   12   15   17   28   29   33   37   40   47   54   56   60   61   63   64 
LCS_GDT     E     119     E     119      5    7   31     3    4    5    7   10   13   16   22   28   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     I     120     I     120      5    7   31     3    4    6    6   10   12   16   22   28   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     T     121     T     121      5    7   31     3    4    6    7   10   14   20   25   28   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     C     122     C     122      5    7   31     3    4    6    8   10   14   20   25   28   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     R     123     R     123      5    7   31     3    4    6    8   11   14   20   25   28   33   36   38   42   45   50   56   60   61   63   64 
LCS_GDT     S     124     S     124      5    7   31     3    4    6    9   12   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     Y     125     Y     125      5    7   31     3    5    7    9   12   13   17   22   28   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     L     126     L     126      5    7   31     3    5    7   15   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     M     127     M     127      5    7   31     3    5    7   15   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     T     128     T     128      4    7   31     3    5    9   15   17   20   24   27   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     N     129     N     129      4    7   31     3    4    4    9   11   14   20   25   30   33   36   38   42   47   54   56   60   61   63   64 
LCS_GDT     Y     130     Y     130      4    7   31     3    4    4    6   10   12   14   18   28   32   36   37   40   47   54   56   60   61   63   64 
LCS_GDT     E     131     E     131      4    7   29     3    4    4    6    8   12   13   18   19   24   26   31   38   47   51   55   60   61   62   63 
LCS_GDT     S     132     S     132      4    7   17     3    4    4    8    9    9   11   13   15   16   18   21   22   28   34   41   49   55   58   61 
LCS_GDT     A     133     A     133      4    7   16     3    4    6    8   10   11   11   13   15   16   19   21   22   26   30   33   35   40   43   49 
LCS_GDT     P     134     P     134      3    7   16     3    3    4    8   10   11   11   13   15   16   19   21   22   28   31   33   35   40   42   47 
LCS_GDT     P     135     P     135      3    7   16     0    2    4    6    8    8   10   10   10   12   15   16   19   25   31   33   34   36   42   47 
LCS_AVERAGE  LCS_A:  10.06  (   4.13    6.83   19.20 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8      8      9     15     17     20     24     27     30     33     36     38     42     47     54     56     60     61     63     64 
GDT PERCENT_CA   6.56   6.56   7.38  12.30  13.93  16.39  19.67  22.13  24.59  27.05  29.51  31.15  34.43  38.52  44.26  45.90  49.18  50.00  51.64  52.46
GDT RMS_LOCAL    0.16   0.16   0.61   1.61   1.88   2.06   2.34   2.60   2.90   3.56   3.83   4.20   4.47   5.27   5.71   5.69   5.98   6.05   6.23   6.33
GDT RMS_ALL_CA  21.73  21.73  22.27  16.95  16.65  16.74  16.67  16.52  16.50  17.08  16.95  17.24  17.26  17.74  18.06  17.64  17.94  17.91  17.96  18.00

#      Molecule1      Molecule2       DISTANCE
LGA    E      14      E      14         36.410
LGA    E      15      E      15         33.242
LGA    S      16      S      16         27.274
LGA    F      17      F      17         21.232
LGA    L      18      L      18         14.662
LGA    Y      19      Y      19          7.651
LGA    F      20      F      20          2.741
LGA    A      21      A      21          5.911
LGA    Y      22      Y      22         10.838
LGA    G      23      G      23         14.898
LGA    S      24      S      24         16.995
LGA    N      25      N      25         15.984
LGA    L      26      L      26         15.708
LGA    L      27      L      27         18.894
LGA    T      28      T      28         21.227
LGA    E      29      E      29         26.318
LGA    R      30      R      30         25.993
LGA    I      31      I      31         19.660
LGA    H      32      H      32         22.024
LGA    L      33      L      33         27.814
LGA    R      34      R      34         25.436
LGA    N      35      N      35         26.364
LGA    P      36      P      36         31.262
LGA    S      37      S      37         29.709
LGA    A      38      A      38         24.988
LGA    A      39      A      39         23.269
LGA    F      40      F      40         21.805
LGA    F      41      F      41         18.762
LGA    C      42      C      42         19.468
LGA    V      43      V      43         17.834
LGA    A      44      A      44         14.949
LGA    R      45      R      45         15.305
LGA    L      46      L      46         14.961
LGA    Q      47      Q      47         20.525
LGA    D      48      D      48         23.364
LGA    F      49      F      49         21.534
LGA    K      50      K      50         19.814
LGA    L      51      L      51         17.823
LGA    D      52      D      52         19.026
LGA    F      53      F      53         18.812
LGA    G      54      G      54         22.260
LGA    N      55      N      55         23.800
LGA    S      56      S      56         25.780
LGA    Q      57      Q      57         30.013
LGA    G      58      G      58         30.174
LGA    K      59      K      59         28.279
LGA    T      60      T      60         28.291
LGA    S      61      S      61         21.486
LGA    Q      62      Q      62         19.985
LGA    T      63      T      63         12.570
LGA    W      64      W      64         10.788
LGA    H      65      H      65         17.149
LGA    G      66      G      66         14.492
LGA    G      67      G      67          9.847
LGA    I      68      I      68          3.652
LGA    A      69      A      69          1.296
LGA    T      70      T      70          1.912
LGA    I      71      I      71          2.870
LGA    F      72      F      72          2.535
LGA    Q      73      Q      73          3.282
LGA    S      74      S      74          2.151
LGA    P      75      P      75          4.822
LGA    G      76      G      76          3.813
LGA    D      77      D      77          2.575
LGA    E      78      E      78          5.164
LGA    V      79      V      79          7.082
LGA    W      80      W      80          6.070
LGA    G      81      G      81          3.976
LGA    V      82      V      82          9.208
LGA    V      83      V      83         11.950
LGA    W      84      W      84         15.377
LGA    K      85      K      85         17.423
LGA    M      86      M      86         13.810
LGA    N      87      N      87         15.796
LGA    K      88      K      88         19.128
LGA    S      89      S      89         18.972
LGA    N      90      N      90         17.741
LGA    L      91      L      91         14.348
LGA    N      92      N      92         10.304
LGA    S      93      S      93         11.733
LGA    L      94      L      94         12.121
LGA    D      95      D      95          6.994
LGA    E      96      E      96          7.144
LGA    Q      97      Q      97         11.905
LGA    E      98      E      98         10.134
LGA    G      99      G      99          8.453
LGA    V     100      V     100          8.341
LGA    K     101      K     101         10.621
LGA    S     102      S     102          9.764
LGA    G     103      G     103          9.495
LGA    M     104      M     104          3.134
LGA    Y     105      Y     105          0.519
LGA    V     106      V     106          2.563
LGA    V     107      V     107          3.950
LGA    I     108      I     108          2.542
LGA    E     109      E     109          2.839
LGA    V     110      V     110          3.005
LGA    K     111      K     111          1.799
LGA    V     112      V     112          0.918
LGA    A     113      A     113          1.985
LGA    T     114      T     114          1.068
LGA    Q     115      Q     115          0.663
LGA    E     116      E     116          6.168
LGA    G     117      G     117         11.369
LGA    K     118      K     118         13.220
LGA    E     119      E     119         10.563
LGA    I     120      I     120          9.539
LGA    T     121      T     121          8.997
LGA    C     122      C     122          7.085
LGA    R     123      R     123          6.024
LGA    S     124      S     124          3.701
LGA    Y     125      Y     125          5.110
LGA    L     126      L     126          2.730
LGA    M     127      M     127          2.468
LGA    T     128      T     128          2.334
LGA    N     129      N     129          5.506
LGA    Y     130      Y     130         10.027
LGA    E     131      E     131         15.934
LGA    S     132      S     132         22.000
LGA    A     133      A     133         25.942
LGA    P     134      P     134         28.946
LGA    P     135      P     135         29.344

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  122  122    4.0     27    2.60    21.721    17.638     0.998

LGA_LOCAL      RMSD =  2.604  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.478  Number of atoms =  122 
Std_ALL_ATOMS  RMSD = 15.195  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.487266 * X  +  -0.220038 * Y  +  -0.845077 * Z  +  -1.765238
  Y_new =  -0.171427 * X  +   0.973006 * Y  +  -0.154504 * Z  +  92.954628
  Z_new =   0.856262 * X  +   0.069585 * Y  +  -0.511833 * Z  +   5.004196 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   3.006469   -0.135124  [ DEG:   172.2580     -7.7420 ]
  Theta =  -1.027990   -2.113603  [ DEG:   -58.8995   -121.1005 ]
  Phi   =  -2.803302    0.338291  [ DEG:  -160.6174     19.3826 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0342TS168_5-D1                               
REMARK     2: T0342_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0342TS168_5-D1.T0342_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  122  122   4.0   27   2.60  17.638    15.20
REMARK  ---------------------------------------------------------- 
MOLECULE T0342TS168_5-D1
PFRMAT TS
TARGET T0342
MODEL 5
PARENT N/A
ATOM     14  CA  GLU    14       5.995  89.881  19.813  1.00 25.00           C
ATOM     15  CA  GLU    15       3.182  90.457  17.282  1.00 25.00           C
ATOM     16  CA  SER    16       1.127  91.745  14.359  1.00 25.00           C
ATOM     17  CA  PHE    17       1.705  88.796  11.966  1.00 25.00           C
ATOM     18  CA  LEU    18       1.791  88.440   8.166  1.00 25.00           C
ATOM     19  CA  TYR    19       3.645  87.486   4.988  1.00 25.00           C
ATOM     20  CA  PHE    20       3.481  88.927   1.521  1.00 25.00           C
ATOM     21  CA  ALA    21       1.081  91.671   0.573  1.00 25.00           C
ATOM     22  CA  TYR    22       1.703  92.793  -3.010  1.00 25.00           C
ATOM     23  CA  GLY    23       1.393  90.066  -5.646  1.00 25.00           C
ATOM     24  CA  SER    24       4.299  87.749  -6.182  1.00 25.00           C
ATOM     25  CA  ASN    25       2.129  86.128  -8.912  1.00 25.00           C
ATOM     26  CA  LEU    26      -0.857  85.474  -6.602  1.00 25.00           C
ATOM     27  CA  LEU    27      -3.319  88.400  -6.174  1.00 25.00           C
ATOM     28  CA  THR    28      -2.060  90.050  -9.327  1.00 25.00           C
ATOM     29  CA  GLU    29      -0.578  90.469 -12.834  1.00 25.00           C
ATOM     30  CA  ARG    30      -0.104  94.218 -12.212  1.00 25.00           C
ATOM     31  CA  ILE    31       1.633  93.472  -8.882  1.00 25.00           C
ATOM     32  CA  HIS    32       3.938  90.956 -10.620  1.00 25.00           C
ATOM     33  CA  LEU    33       4.785  93.551 -13.307  1.00 25.00           C
ATOM     34  CA  ARG    34       5.569  96.139 -10.596  1.00 25.00           C
ATOM     35  CA  ASN    35       8.642  96.710 -12.858  1.00 25.00           C
ATOM     36  CA  PRO    36       6.915  99.852 -14.221  1.00 25.00           C
ATOM     37  CA  SER    37       7.490 101.576 -10.943  1.00 25.00           C
ATOM     38  CA  ALA    38       3.792 100.799 -10.228  1.00 25.00           C
ATOM     39  CA  ALA    39       1.413  98.522  -8.326  1.00 25.00           C
ATOM     40  CA  PHE    40      -1.047  97.104  -5.793  1.00 25.00           C
ATOM     41  CA  PHE    41      -2.520  93.664  -5.633  1.00 25.00           C
ATOM     42  CA  CYS    42      -4.040  92.314  -2.439  1.00 25.00           C
ATOM     43  CA  VAL    43      -3.290  90.646   0.927  1.00 25.00           C
ATOM     44  CA  ALA    44      -1.181  87.951   2.630  1.00 25.00           C
ATOM     45  CA  ARG    45       0.541  84.498   2.739  1.00 25.00           C
ATOM     46  CA  LEU    46       3.456  82.059   2.440  1.00 25.00           C
ATOM     47  CA  GLN    47       4.976  78.769   1.279  1.00 25.00           C
ATOM     48  CA  ASP    48       6.149  78.794  -2.317  1.00 25.00           C
ATOM     49  CA  PHE    49       5.815  80.730  -5.592  1.00 25.00           C
ATOM     50  CA  LYS    50       7.645  83.612  -3.948  1.00 25.00           C
ATOM     51  CA  LEU    51       4.289  84.211  -2.223  1.00 25.00           C
ATOM     52  CA  ASP    52       1.151  86.444  -2.206  1.00 25.00           C
ATOM     53  CA  PHE    53      -2.554  87.005  -1.370  1.00 25.00           C
ATOM     54  CA  GLY    54      -4.173  83.592  -1.889  1.00 25.00           C
ATOM     55  CA  ASN    55      -1.489  81.120  -0.683  1.00 25.00           C
ATOM     56  CA  SER    56       0.299  79.577  -3.665  1.00 25.00           C
ATOM     57  CA  GLN    57      -2.847  77.440  -3.912  1.00 25.00           C
ATOM     58  CA  GLY    58      -5.234  77.450  -0.987  1.00 25.00           C
ATOM     59  CA  LYS    59      -4.147  75.595   2.100  1.00 25.00           C
ATOM     60  CA  THR    60      -0.752  74.140   2.949  1.00 25.00           C
ATOM     61  CA  SER    61      -0.261  76.731   5.644  1.00 25.00           C
ATOM     62  CA  GLN    62      -2.482  75.928   8.677  1.00 25.00           C
ATOM     63  CA  THR    63      -3.931  78.569  11.055  1.00 25.00           C
ATOM     64  CA  TRP    64      -2.828  82.062  10.031  1.00 25.00           C
ATOM     65  CA  HIS    65      -2.554  82.338   6.219  1.00 25.00           C
ATOM     66  CA  GLY    66      -3.157  86.048   6.847  1.00 25.00           C
ATOM     67  CA  GLY    67      -3.234  89.039   9.148  1.00 25.00           C
ATOM     68  CA  ILE    68      -1.146  92.253   9.557  1.00 25.00           C
ATOM     69  CA  ALA    69       2.239  93.967   9.415  1.00 25.00           C
ATOM     70  CA  THR    70       4.122  97.010   8.113  1.00 25.00           C
ATOM     71  CA  ILE    71       7.543  96.292   6.488  1.00 25.00           C
ATOM     72  CA  PHE    72       7.325  99.252   4.098  1.00 25.00           C
ATOM     73  CA  GLN    73       8.470 102.315   6.006  1.00 25.00           C
ATOM     74  CA  SER    74      10.817 105.217   5.350  1.00 25.00           C
ATOM     75  CA  PRO    75      13.723 105.535   7.763  1.00 25.00           C
ATOM     76  CA  GLY    76      14.991 101.981   7.503  1.00 25.00           C
ATOM     77  CA  ASP    77      15.760  99.468   4.741  1.00 25.00           C
ATOM     78  CA  GLU    78      13.136  98.736   2.126  1.00 25.00           C
ATOM     79  CA  VAL    79      10.389  96.767   0.278  1.00 25.00           C
ATOM     80  CA  TRP    80       9.855  93.337   1.800  1.00 25.00           C
ATOM     81  CA  GLY    81       7.871  90.883   3.992  1.00 25.00           C
ATOM     82  CA  VAL    82       4.546  92.478   5.079  1.00 25.00           C
ATOM     83  CA  VAL    83       0.779  92.385   4.934  1.00 25.00           C
ATOM     84  CA  TRP    84      -2.884  93.413   5.389  1.00 25.00           C
ATOM     85  CA  LYS    85      -5.779  90.997   5.404  1.00 25.00           C
ATOM     86  CA  MET    86      -7.079  87.857   3.732  1.00 25.00           C
ATOM     87  CA  ASN    87      -8.440  84.693   5.384  1.00 25.00           C
ATOM     88  CA  LYS    88     -11.800  84.260   7.185  1.00 25.00           C
ATOM     89  CA  SER    89     -15.427  85.481   7.060  1.00 25.00           C
ATOM     90  CA  ASN    90     -14.406  88.765   8.744  1.00 25.00           C
ATOM     91  CA  LEU    91     -11.572  89.213   6.207  1.00 25.00           C
ATOM     92  CA  ASN    92     -14.018  88.582   3.327  1.00 25.00           C
ATOM     93  CA  SER    93     -16.442  91.162   4.788  1.00 25.00           C
ATOM     94  CA  LEU    94     -13.595  93.706   5.083  1.00 25.00           C
ATOM     95  CA  ASP    95     -12.600  93.052   1.444  1.00 25.00           C
ATOM     96  CA  GLU    96     -16.232  93.544   0.336  1.00 25.00           C
ATOM     97  CA  GLN    97     -16.406  96.837   2.284  1.00 25.00           C
ATOM     98  CA  GLU    98     -13.155  98.820   2.682  1.00 25.00           C
ATOM     99  CA  GLY    99     -14.239  99.814   6.194  1.00 25.00           C
ATOM    100  CA  VAL   100     -10.754  98.715   7.306  1.00 25.00           C
ATOM    101  CA  LYS   101     -10.583  95.675   9.681  1.00 25.00           C
ATOM    102  CA  SER   102      -7.723  93.143   9.682  1.00 25.00           C
ATOM    103  CA  GLY   103      -5.284  96.068  10.010  1.00 25.00           C
ATOM    104  CA  MET   104      -4.845  98.031   6.781  1.00 25.00           C
ATOM    105  CA  TYR   105      -4.932  97.351   3.041  1.00 25.00           C
ATOM    106  CA  VAL   106      -2.491  96.152   0.423  1.00 25.00           C
ATOM    107  CA  VAL   107       0.688  97.504  -1.061  1.00 25.00           C
ATOM    108  CA  ILE   108       3.522  98.065  -3.608  1.00 25.00           C
ATOM    109  CA  GLU   109       6.439  95.762  -4.189  1.00 25.00           C
ATOM    110  CA  VAL   110       6.609  92.566  -6.235  1.00 25.00           C
ATOM    111  CA  LYS   111      10.040  92.170  -4.606  1.00 25.00           C
ATOM    112  CA  VAL   112      12.376  90.633  -2.128  1.00 25.00           C
ATOM    113  CA  ALA   113      15.802  89.987  -0.670  1.00 25.00           C
ATOM    114  CA  THR   114      17.539  86.743  -1.541  1.00 25.00           C
ATOM    115  CA  GLN   115      19.515  84.766   1.085  1.00 25.00           C
ATOM    116  CA  GLU   116      22.205  84.839   3.756  1.00 25.00           C
ATOM    117  CA  GLY   117      20.601  84.723   7.203  1.00 25.00           C
ATOM    118  CA  LYS   118      17.436  86.700   6.848  1.00 25.00           C
ATOM    119  CA  GLU   119      15.977  87.422   3.463  1.00 25.00           C
ATOM    120  CA  ILE   120      12.300  87.323   2.501  1.00 25.00           C
ATOM    121  CA  THR   121      11.673  85.428  -0.734  1.00 25.00           C
ATOM    122  CA  CYS   122       8.095  86.189   0.349  1.00 25.00           C
ATOM    123  CA  ARG   123       7.871  88.461  -2.622  1.00 25.00           C
ATOM    124  CA  SER   124       6.018  91.477  -1.253  1.00 25.00           C
ATOM    125  CA  TYR   125       5.122  94.946   0.130  1.00 25.00           C
ATOM    126  CA  LEU   126       3.079  96.443   3.026  1.00 25.00           C
ATOM    127  CA  MET   127       0.343  98.953   3.845  1.00 25.00           C
ATOM    128  CA  THR   128      -1.938 101.563   2.287  1.00 25.00           C
ATOM    129  CA  ASN   129      -5.464 102.666   1.516  1.00 25.00           C
ATOM    130  CA  TYR   130      -6.141 106.262   0.513  1.00 25.00           C
ATOM    131  CA  GLU   131      -7.484 109.542  -0.868  1.00 25.00           C
ATOM    132  CA  SER   132     -10.732 110.999  -2.171  1.00 25.00           C
ATOM    133  CA  ALA   133     -14.151 109.382  -2.476  1.00 25.00           C
ATOM    134  CA  PRO   134     -16.196 106.139  -2.147  1.00 25.00           C
ATOM    135  CA  PRO   135     -18.790 103.375  -1.853  1.00 25.00           C
TER
END
