
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  122 (  122),  selected  122 , name T0342TS168_2-D1
# Molecule2: number of CA atoms  122 (  967),  selected  122 , name T0342_D1.pdb
# PARAMETERS: T0342TS168_2-D1.T0342_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    56        72 - 127         4.99    10.14
  LCS_AVERAGE:     30.23

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        83 - 100         1.98    14.02
  LCS_AVERAGE:      7.69

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:     9        89 - 97          0.89    14.76
  LONGEST_CONTINUOUS_SEGMENT:     9        90 - 98          0.89    17.11
  LCS_AVERAGE:      3.97

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  122
LCS_GDT     E      14     E      14      3    5   15     0    0    3    7    8    9   10   12   15   20   23   25   39   39   42   50   58   61   64   71 
LCS_GDT     E      15     E      15      3    5   17     3    3    3    7    8    9   10   13   16   23   32   39   40   50   52   60   63   72   74   76 
LCS_GDT     S      16     S      16      4    9   18     3    3    5    6   10   14   15   21   29   37   47   53   62   69   70   73   76   79   82   85 
LCS_GDT     F      17     F      17      4    9   18     3    3    6    7   10   14   15   21   29   37   43   51   62   69   70   74   76   79   82   85 
LCS_GDT     L      18     L      18      4    9   18     3    3    6    8   10   13   15   19   28   37   43   51   62   69   70   74   76   79   82   85 
LCS_GDT     Y      19     Y      19      4    9   18     3    3    8   11   13   15   18   21   30   38   43   51   62   69   70   74   76   79   82   85 
LCS_GDT     F      20     F      20      4    9   18     3    4    6   10   15   20   25   31   34   44   52   58   62   69   70   74   76   79   82   85 
LCS_GDT     A      21     A      21      4    9   18     3    5    7   12   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     Y      22     Y      22      4    9   18     3    4    9   13   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     G      23     G      23      4    9   18     3    4    6    7   10   15   25   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     S      24     S      24      4    9   18     0    3    5    6    9   15   24   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     N      25     N      25      4   10   18     3    3    5   10   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     L      26     L      26      4   10   18     3    3    6    9    9   15   18   24   33   38   47   53   62   69   70   74   76   79   82   85 
LCS_GDT     L      27     L      27      8   10   18     3    5    8   13   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     T      28     T      28      8   10   18     5    6    8    9   14   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     E      29     E      29      8   10   18     5    6    8    9    9   15   20   31   40   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     R      30     R      30      8   10   18     5    6    8    9   11   16   21   29   39   47   53   58   62   67   70   74   76   79   82   85 
LCS_GDT     I      31     I      31      8   10   18     5    6    8    9    9   13   20   27   39   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     H      32     H      32      8   10   18     5    6    8    9    9   10   14   15   19   20   27   33   42   49   62   71   73   78   82   85 
LCS_GDT     L      33     L      33      8   10   18     4    6    8    9    9   10   13   16   19   22   30   37   45   52   58   66   71   78   81   85 
LCS_GDT     R      34     R      34      8   10   17     3    4    8    9    9   10   12   12   19   22   26   33   42   50   57   63   69   78   79   85 
LCS_GDT     N      35     N      35      3    6   17     3    3    4    5    7    8   13   18   21   22   28   36   46   50   62   71   73   78   82   85 
LCS_GDT     P      36     P      36      3    6   17     3    3    4    5    7   10   13   18   28   38   45   52   58   65   69   71   76   78   82   85 
LCS_GDT     S      37     S      37      3    8   17     3    3    4    8   11   17   23   31   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     A      38     A      38      4    9   17     3    3    5    7    9   11   20   31   34   40   52   58   62   69   70   74   76   79   82   85 
LCS_GDT     A      39     A      39      4    9   17     3    3    5    7    9   13   16   23   30   37   43   51   62   69   70   74   76   79   82   85 
LCS_GDT     F      40     F      40      4    9   17     3    3    5    7    9   11   11   14   22   26   33   44   58   63   67   71   75   79   82   83 
LCS_GDT     F      41     F      41      4    9   17     0    3    5    7    9   11   11   13   18   20   33   37   44   50   55   64   68   73   79   82 
LCS_GDT     C      42     C      42      4    9   17     3    4    5    7    9   11   11   13   16   17   19   24   41   46   47   59   61   66   77   80 
LCS_GDT     V      43     V      43      5    9   17     3    4    7    7    9   11   11   13   16   17   19   20   23   25   28   31   36   50   64   71 
LCS_GDT     A      44     A      44      5    9   17     3    4    7    7    9   11   11   13   16   17   19   20   24   26   33   34   47   52   58   71 
LCS_GDT     R      45     R      45      5    9   17     3    4    7    7    8   11   11   12   16   17   19   21   25   31   35   39   45   52   60   64 
LCS_GDT     L      46     L      46      5    9   17     3    4    7    7    9   11   11   13   17   18   23   26   30   34   41   50   58   63   72   80 
LCS_GDT     Q      47     Q      47      5    8   17     3    4    7    7    8    9    9   12   15   18   23   26   30   34   40   48   54   61   67   72 
LCS_GDT     D      48     D      48      5    9   17     3    4    7    7    8   11   11   12   15   18   23   26   30   34   41   49   55   62   68   76 
LCS_GDT     F      49     F      49      5    9   19     3    4    7    8    9   11   11   13   16   18   23   26   30   36   40   50   55   62   69   79 
LCS_GDT     K      50     K      50      6    9   19     4    5    6    8    8    9   10   11   16   18   20   23   26   30   33   40   47   50   57   64 
LCS_GDT     L      51     L      51      6    9   19     4    4    6    8    8    9   10   11   13   18   20   23   25   28   33   40   47   50   53   64 
LCS_GDT     D      52     D      52      6    9   19     4    5    6    8    8    9   10   11   13   14   18   23   25   28   46   54   61   74   77   81 
LCS_GDT     F      53     F      53      6    9   19     4    6    6    8    8    9   10   11   19   21   31   41   48   56   61   74   75   79   82   84 
LCS_GDT     G      54     G      54      6    9   19     4    6    6    8    8    9   10   11   16   19   32   40   55   65   69   74   76   79   82   85 
LCS_GDT     N      55     N      55      6    9   19     4    6    6    8    8    9   11   19   23   32   44   50   56   64   69   71   76   78   82   85 
LCS_GDT     S      56     S      56      6    9   19     3    6    6    6    6    9   11   16   18   22   32   40   45   53   58   64   70   78   81   85 
LCS_GDT     Q      57     Q      57      6    7   19     3    6    6    6    6    9   10   11   11   21   26   32   42   49   57   63   69   73   76   82 
LCS_GDT     G      58     G      58      6    7   19     3    6    6    8    8    8   11   16   18   22   27   33   43   50   56   63   69   73   80   84 
LCS_GDT     K      59     K      59      3    5   19     3    3    3    4    6    8   11   14   21   22   27   33   39   49   56   63   68   72   78   84 
LCS_GDT     T      60     T      60      3    5   19     3    5    5    7    7    9   13   17   21   22   28   35   43   50   56   63   69   73   78   84 
LCS_GDT     S      61     S      61      4    6   19     4    5    5    7    7    9   10   16   19   22   27   32   42   49   56   63   69   73   76   82 
LCS_GDT     Q      62     Q      62      4    6   19     4    5    5    7    7    9   10   12   14   18   27   31   37   42   54   63   67   72   75   80 
LCS_GDT     T      63     T      63      4    6   19     4    4    4    5    7   10   14   17   21   23   28   31   39   47   56   63   68   73   76   84 
LCS_GDT     W      64     W      64      4    6   19     4    4    4    5   10   11   18   24   28   37   44   50   56   60   69   71   75   78   82   85 
LCS_GDT     H      65     H      65      4    6   19     3    3    4    5    7    9   10   13   23   30   36   42   48   56   62   67   72   78   81   85 
LCS_GDT     G      66     G      66      4    8   19     3    3    4    6    9   10   11   11   14   20   27   30   43   49   57   62   69   73   79   84 
LCS_GDT     G      67     G      67      4    9   19     3    3    5    5    9   10   11   11   12   17   19   23   30   34   43   48   60   63   74   80 
LCS_GDT     I      68     I      68      4    9   19     3    3    5    5    9    9   11   14   18   21   27   38   43   50   58   67   70   78   81   85 
LCS_GDT     A      69     A      69      4    9   28     3    4    5    6    9   10   13   16   19   22   36   43   49   57   62   68   73   78   81   85 
LCS_GDT     T      70     T      70      4    9   50     3    3    5    6    7    9   13   17   21   24   43   46   54   59   66   71   74   78   81   85 
LCS_GDT     I      71     I      71      3    9   50     3    4    5    7    9   10   14   17   28   35   44   50   56   64   70   71   76   78   82   85 
LCS_GDT     F      72     F      72      3    9   56     3    4    5    6    9   11   14   22   28   37   45   54   61   69   70   74   76   79   82   85 
LCS_GDT     Q      73     Q      73      3    9   56     3    3    5    8   11   16   25   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     S      74     S      74      3    9   56     3    3    5   10   14   17   22   31   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     P      75     P      75      3    9   56     3    5    9   13   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     G      76     G      76      3    7   56     3    3    4   11   15   18   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     D      77     D      77      4    7   56     2    4    5    9   14   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     E      78     E      78      4    8   56     3    5    9   13   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     V      79     V      79      4    8   56     3    4    9   13   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     W      80     W      80      4    8   56     3    4    5    7   10   17   22   27   33   41   49   57   62   69   70   74   76   79   82   85 
LCS_GDT     G      81     G      81      4    8   56     3    4    7   11   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     V      82     V      82      4    8   56     3    4    5    7   15   18   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     V      83     V      83      4   18   56     3    6   11   14   17   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     W      84     W      84      4   18   56     3    6   11   14   17   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     K      85     K      85      4   18   56     3    5    9   14   17   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     M      86     M      86      5   18   56     3    6   11   14   17   19   23   30   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     N      87     N      87      5   18   56     3    5    6   13   17   18   19   26   28   38   44   53   61   67   69   73   76   79   82   85 
LCS_GDT     K      88     K      88      5   18   56     4    5   11   14   17   19   26   30   37   46   51   58   62   69   70   74   76   79   82   85 
LCS_GDT     S      89     S      89      9   18   56     4    6   11   14   17   20   26   30   38   46   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     N      90     N      90      9   18   56     8    8   11   14   17   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     L      91     L      91      9   18   56     8    8   11   14   17   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     N      92     N      92      9   18   56     8    8   11   14   17   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     S      93     S      93      9   18   56     8    8   11   14   17   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     L      94     L      94      9   18   56     8    8   11   14   17   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     D      95     D      95      9   18   56     8    8   11   14   17   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     E      96     E      96      9   18   56     8    8   10   14   17   20   26   31   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     Q      97     Q      97      9   18   56     8    8   10   14   17   20   26   31   36   46   51   58   62   69   70   74   76   79   82   85 
LCS_GDT     E      98     E      98      9   18   56     3    3    4    9   12   15   17   19   20   26   33   42   54   63   69   74   76   79   82   85 
LCS_GDT     G      99     G      99      3   18   56     3    3    4   14   17   18   21   28   39   46   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     V     100     V     100      3   18   56     3    5    8   11   17   18   21   31   39   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     K     101     K     101      3   14   56     3    3    5   10   13   18   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     S     102     S     102      4    7   56     4    5    6    9   10   13   17   26   33   45   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     G     103     G     103      4    7   56     4    4    5    8   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     M     104     M     104      4    7   56     4    5    6    9   10   17   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     Y     105     Y     105      4    7   56     4    4    4    7   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     V     106     V     106      3    7   56     3    3    6    9   12   18   26   31   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     V     107     V     107      4    7   56     3    4    5    8   11   12   14   22   30   38   43   55   61   69   70   73   76   79   82   85 
LCS_GDT     I     108     I     108      4    7   56     3    4    5    8   11   20   26   31   34   42   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     E     109     E     109      4    7   56     3    4    6    8   15   20   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     V     110     V     110      4    7   56     3    4    6    8   15   20   26   31   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     K     111     K     111      4    7   56     3    4    6   10   13   19   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     V     112     V     112      4    7   56     3    3    4    6   10   15   20   31   40   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     A     113     A     113      4    7   56     1    3    4    7   10   15   20   29   39   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     T     114     T     114      3    7   56     3    3    4    8   11   16   23   31   40   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     Q     115     Q     115      3    7   56     3    3    4    5   10   12   18   25   28   37   45   52   56   64   69   71   76   78   82   85 
LCS_GDT     E     116     E     116      3    7   56     3    4    5    8   11   16   20   29   39   45   53   57   61   67   70   74   76   79   82   85 
LCS_GDT     G     117     G     117      3    7   56     3    4    5    7   11   16   25   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     K     118     K     118      3    7   56     3    3    5   13   15   21   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     E     119     E     119      4    7   56     3    4    5   10   15   20   26   31   34   41   49   57   62   69   70   74   76   79   82   85 
LCS_GDT     I     120     I     120      4    7   56     3    4    5    9   15   20   25   31   34   39   49   56   62   69   70   74   76   79   82   85 
LCS_GDT     T     121     T     121      4    7   56     3    4    6    7    9   13   16   23   31   38   42   45   49   52   61   69   75   78   82   83 
LCS_GDT     C     122     C     122      6    7   56     3    5    6   10   13   16   23   31   34   41   48   55   62   69   70   74   76   79   82   85 
LCS_GDT     R     123     R     123      6    7   56     3    5    6   10   13   17   23   31   34   45   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     S     124     S     124      6    7   56     3    5    6   10   13   18   26   32   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     Y     125     Y     125      6    7   56     3    5    6    9   12   18   25   31   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     L     126     L     126      6    7   56     3    5    6    9   13   18   26   31   41   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     M     127     M     127      6    7   56     3    5    6    9   13   18   26   31   40   48   53   58   62   69   70   74   76   79   82   85 
LCS_GDT     T     128     T     128      5    7   53     2    4    5    7    8   12   19   25   29   38   43   52   58   67   69   74   76   79   82   85 
LCS_GDT     N     129     N     129      5    7   52     3    3    4    6    9   13   18   23   29   38   52   57   61   67   69   74   76   79   82   85 
LCS_GDT     Y     130     Y     130      5    6   50     4    4    5    8    9   13   14   16   23   32   39   52   60   66   69   74   76   79   82   85 
LCS_GDT     E     131     E     131      5    6   22     4    4    5    6    6    9   14   16   19   26   28   39   46   55   64   69   74   78   82   83 
LCS_GDT     S     132     S     132      5    6   17     4    4    5    6    6    7   10   12   16   21   26   34   47   51   61   65   74   78   82   83 
LCS_GDT     A     133     A     133      4    6   17     4    4    5    6    6    9   12   13   18   20   29   37   47   51   55   64   73   76   82   83 
LCS_GDT     P     134     P     134      3    5   17     3    3    3    3    4    6    9   13   16   19   26   34   44   50   54   59   61   65   74   83 
LCS_GDT     P     135     P     135      3    3   17     3    3    3    4    7    8   12   17   25   28   33   39   47   59   64   69   74   78   82   83 
LCS_AVERAGE  LCS_A:  13.96  (   3.97    7.69   30.23 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8      8     11     14     17     21     26     32     41     48     53     58     62     69     70     74     76     79     82     85 
GDT PERCENT_CA   6.56   6.56   9.02  11.48  13.93  17.21  21.31  26.23  33.61  39.34  43.44  47.54  50.82  56.56  57.38  60.66  62.30  64.75  67.21  69.67
GDT RMS_LOCAL    0.16   0.16   1.09   1.31   1.68   2.23   2.54   3.02   3.43   3.76   3.96   4.18   4.36   4.77   4.83   5.15   5.28   5.45   5.74   5.92
GDT RMS_ALL_CA  15.65  15.65  12.74  13.08  13.55  10.87  10.75  10.49  10.32  10.07  10.11  10.08  10.15  10.28  10.21  10.04   9.95  10.09   9.88   9.89

#      Molecule1      Molecule2       DISTANCE
LGA    E      14      E      14         17.586
LGA    E      15      E      15         12.775
LGA    S      16      S      16          7.606
LGA    F      17      F      17          7.904
LGA    L      18      L      18          7.578
LGA    Y      19      Y      19          7.430
LGA    F      20      F      20          5.921
LGA    A      21      A      21          1.744
LGA    Y      22      Y      22          1.842
LGA    G      23      G      23          3.872
LGA    S      24      S      24          4.361
LGA    N      25      N      25          2.902
LGA    L      26      L      26          7.229
LGA    L      27      L      27          3.092
LGA    T      28      T      28          2.441
LGA    E      29      E      29          5.617
LGA    R      30      R      30          7.800
LGA    I      31      I      31          6.178
LGA    H      32      H      32         10.812
LGA    L      33      L      33         14.502
LGA    R      34      R      34         14.199
LGA    N      35      N      35         12.096
LGA    P      36      P      36         10.789
LGA    S      37      S      37          5.438
LGA    A      38      A      38          6.902
LGA    A      39      A      39          8.292
LGA    F      40      F      40          9.667
LGA    F      41      F      41         11.605
LGA    C      42      C      42         13.067
LGA    V      43      V      43         15.353
LGA    A      44      A      44         14.699
LGA    R      45      R      45         15.970
LGA    L      46      L      46         14.075
LGA    Q      47      Q      47         17.804
LGA    D      48      D      48         17.019
LGA    F      49      F      49         14.913
LGA    K      50      K      50         18.200
LGA    L      51      L      51         16.729
LGA    D      52      D      52         13.861
LGA    F      53      F      53         11.476
LGA    G      54      G      54         10.443
LGA    N      55      N      55         12.201
LGA    S      56      S      56         16.792
LGA    Q      57      Q      57         21.112
LGA    G      58      G      58         19.014
LGA    K      59      K      59         19.722
LGA    T      60      T      60         19.822
LGA    S      61      S      61         19.945
LGA    Q      62      Q      62         24.087
LGA    T      63      T      63         18.589
LGA    W      64      W      64         13.220
LGA    H      65      H      65         17.230
LGA    G      66      G      66         19.325
LGA    G      67      G      67         19.065
LGA    I      68      I      68         14.972
LGA    A      69      A      69         13.041
LGA    T      70      T      70         11.306
LGA    I      71      I      71          9.273
LGA    F      72      F      72          7.354
LGA    Q      73      Q      73          3.346
LGA    S      74      S      74          4.085
LGA    P      75      P      75          3.144
LGA    G      76      G      76          3.858
LGA    D      77      D      77          2.107
LGA    E      78      E      78          2.592
LGA    V      79      V      79          3.513
LGA    W      80      W      80          5.799
LGA    G      81      G      81          3.413
LGA    V      82      V      82          3.899
LGA    V      83      V      83          2.161
LGA    W      84      W      84          0.674
LGA    K      85      K      85          2.379
LGA    M      86      M      86          4.818
LGA    N      87      N      87          7.994
LGA    K      88      K      88          6.730
LGA    S      89      S      89          5.984
LGA    N      90      N      90          3.927
LGA    L      91      L      91          3.261
LGA    N      92      N      92          3.145
LGA    S      93      S      93          3.503
LGA    L      94      L      94          2.394
LGA    D      95      D      95          2.509
LGA    E      96      E      96          4.130
LGA    Q      97      Q      97          5.597
LGA    E      98      E      98          9.275
LGA    G      99      G      99          5.454
LGA    V     100      V     100          6.309
LGA    K     101      K     101          3.562
LGA    S     102      S     102          4.806
LGA    G     103      G     103          1.432
LGA    M     104      M     104          2.838
LGA    Y     105      Y     105          2.429
LGA    V     106      V     106          4.581
LGA    V     107      V     107          7.050
LGA    I     108      I     108          5.766
LGA    E     109      E     109          3.751
LGA    V     110      V     110          4.295
LGA    K     111      K     111          3.995
LGA    V     112      V     112          5.170
LGA    A     113      A     113          5.729
LGA    T     114      T     114          5.881
LGA    Q     115      Q     115         10.922
LGA    E     116      E     116          8.267
LGA    G     117      G     117          3.769
LGA    K     118      K     118          2.466
LGA    E     119      E     119          5.529
LGA    I     120      I     120          5.989
LGA    T     121      T     121         10.056
LGA    C     122      C     122          6.023
LGA    R     123      R     123          5.063
LGA    S     124      S     124          3.975
LGA    Y     125      Y     125          4.643
LGA    L     126      L     126          4.777
LGA    M     127      M     127          5.875
LGA    T     128      T     128          9.827
LGA    N     129      N     129          9.327
LGA    Y     130      Y     130         10.382
LGA    E     131      E     131         13.383
LGA    S     132      S     132         15.052
LGA    A     133      A     133         16.088
LGA    P     134      P     134         17.097
LGA    P     135      P     135         11.985

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  122  122    4.0     32    3.02    26.230    22.270     1.027

LGA_LOCAL      RMSD =  3.016  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 10.370  Number of atoms =  122 
Std_ALL_ATOMS  RMSD =  9.697  (standard rmsd on all 122 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.861952 * X  +  -0.066382 * Y  +  -0.502626 * Z  +  -2.446185
  Y_new =   0.293467 * X  +   0.743093 * Y  +  -0.601406 * Z  +  83.979271
  Z_new =   0.413420 * X  +  -0.665887 * Y  +  -0.621030 * Z  +   0.602988 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.321352    0.820241  [ DEG:  -133.0037     46.9963 ]
  Theta =  -0.426207   -2.715385  [ DEG:   -24.4199   -155.5801 ]
  Phi   =   2.813435   -0.328158  [ DEG:   161.1979    -18.8021 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0342TS168_2-D1                               
REMARK     2: T0342_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0342TS168_2-D1.T0342_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  122  122   4.0   32   3.02  22.270     9.70
REMARK  ---------------------------------------------------------- 
MOLECULE T0342TS168_2-D1
PFRMAT TS
TARGET T0342
MODEL 2
PARENT N/A
ATOM     14  CA  GLU    14       0.685  72.152  -1.052  1.00 25.00           C
ATOM     15  CA  GLU    15       0.662  75.843  -2.133  1.00 25.00           C
ATOM     16  CA  SER    16      -1.673  77.882  -4.335  1.00 25.00           C
ATOM     17  CA  PHE    17      -3.144  81.301  -3.546  1.00 25.00           C
ATOM     18  CA  LEU    18      -2.227  84.720  -2.318  1.00 25.00           C
ATOM     19  CA  TYR    19      -2.550  84.083   1.399  1.00 25.00           C
ATOM     20  CA  PHE    20       1.212  84.602   1.900  1.00 25.00           C
ATOM     21  CA  ALA    21       3.421  86.453   4.410  1.00 25.00           C
ATOM     22  CA  TYR    22       4.022  89.675   6.451  1.00 25.00           C
ATOM     23  CA  GLY    23       6.952  89.418   8.875  1.00 25.00           C
ATOM     24  CA  SER    24       5.277  86.071   9.568  1.00 25.00           C
ATOM     25  CA  ASN    25       1.531  85.553   9.677  1.00 25.00           C
ATOM     26  CA  LEU    26      -1.528  83.715  11.035  1.00 25.00           C
ATOM     27  CA  LEU    27       0.598  80.609  10.598  1.00 25.00           C
ATOM     28  CA  THR    28       3.777  79.338   8.899  1.00 25.00           C
ATOM     29  CA  GLU    29       5.189  75.914   7.928  1.00 25.00           C
ATOM     30  CA  ARG    30       3.000  75.875   4.786  1.00 25.00           C
ATOM     31  CA  ILE    31       4.216  79.388   3.865  1.00 25.00           C
ATOM     32  CA  HIS    32       7.851  78.281   4.344  1.00 25.00           C
ATOM     33  CA  LEU    33       7.241  75.227   2.114  1.00 25.00           C
ATOM     34  CA  ARG    34       5.686  77.470  -0.573  1.00 25.00           C
ATOM     35  CA  ASN    35       5.468  74.135  -2.488  1.00 25.00           C
ATOM     36  CA  PRO    36       3.372  73.431  -5.627  1.00 25.00           C
ATOM     37  CA  SER    37      -0.361  72.715  -5.934  1.00 25.00           C
ATOM     38  CA  ALA    38      -3.679  73.139  -4.041  1.00 25.00           C
ATOM     39  CA  ALA    39      -4.410  75.103  -0.867  1.00 25.00           C
ATOM     40  CA  PHE    40      -2.814  78.243   0.589  1.00 25.00           C
ATOM     41  CA  PHE    41      -1.086  80.071   3.405  1.00 25.00           C
ATOM     42  CA  CYS    42       0.397  82.449   5.916  1.00 25.00           C
ATOM     43  CA  VAL    43      -1.799  85.529   6.154  1.00 25.00           C
ATOM     44  CA  ALA    44      -0.755  88.233   3.742  1.00 25.00           C
ATOM     45  CA  ARG    45      -1.116  89.017  -0.004  1.00 25.00           C
ATOM     46  CA  LEU    46      -0.692  92.065  -2.297  1.00 25.00           C
ATOM     47  CA  GLN    47      -0.487  92.901  -6.002  1.00 25.00           C
ATOM     48  CA  ASP    48       0.657  96.516  -6.558  1.00 25.00           C
ATOM     49  CA  PHE    49      -1.408  97.079  -3.405  1.00 25.00           C
ATOM     50  CA  LYS    50      -4.145  94.812  -2.130  1.00 25.00           C
ATOM     51  CA  LEU    51      -5.097  92.060   0.393  1.00 25.00           C
ATOM     52  CA  ASP    52      -3.804  91.603   3.934  1.00 25.00           C
ATOM     53  CA  PHE    53      -4.079  89.966   7.361  1.00 25.00           C
ATOM     54  CA  GLY    54      -0.578  90.084   8.972  1.00 25.00           C
ATOM     55  CA  ASN    55       1.864  90.046  11.898  1.00 25.00           C
ATOM     56  CA  SER    56       3.209  87.489  14.345  1.00 25.00           C
ATOM     57  CA  GLN    57       4.395  89.043  17.591  1.00 25.00           C
ATOM     58  CA  GLY    58       6.187  91.627  15.472  1.00 25.00           C
ATOM     59  CA  LYS    59       7.539  93.331  18.566  1.00 25.00           C
ATOM     60  CA  THR    60       9.101  89.935  19.319  1.00 25.00           C
ATOM     61  CA  SER    61       9.902  87.628  16.438  1.00 25.00           C
ATOM     62  CA  GLN    62      11.358  84.930  18.771  1.00 25.00           C
ATOM     63  CA  THR    63       7.794  84.827  20.057  1.00 25.00           C
ATOM     64  CA  TRP    64       5.536  83.897  17.091  1.00 25.00           C
ATOM     65  CA  HIS    65       5.780  82.748  13.431  1.00 25.00           C
ATOM     66  CA  GLY    66       7.936  81.820  10.479  1.00 25.00           C
ATOM     67  CA  GLY    67       7.284  82.394   6.747  1.00 25.00           C
ATOM     68  CA  ILE    68       8.628  85.778   5.765  1.00 25.00           C
ATOM     69  CA  ALA    69      11.801  87.845   5.749  1.00 25.00           C
ATOM     70  CA  THR    70      12.222  91.556   6.555  1.00 25.00           C
ATOM     71  CA  ILE    71      12.057  92.536   2.849  1.00 25.00           C
ATOM     72  CA  PHE    72      10.227  95.815   2.100  1.00 25.00           C
ATOM     73  CA  GLN    73      10.062  99.617   2.256  1.00 25.00           C
ATOM     74  CA  SER    74      10.467 103.370   1.672  1.00 25.00           C
ATOM     75  CA  PRO    75      13.236 105.225   3.620  1.00 25.00           C
ATOM     76  CA  GLY    76      14.684 102.030   5.131  1.00 25.00           C
ATOM     77  CA  ASP    77      16.254  98.570   5.548  1.00 25.00           C
ATOM     78  CA  GLU    78      12.663  97.480   6.168  1.00 25.00           C
ATOM     79  CA  VAL    79       9.495  95.878   7.532  1.00 25.00           C
ATOM     80  CA  TRP    80       7.694  93.165   5.626  1.00 25.00           C
ATOM     81  CA  GLY    81       7.747  89.966   3.649  1.00 25.00           C
ATOM     82  CA  VAL    82       8.937  87.458   0.979  1.00 25.00           C
ATOM     83  CA  VAL    83       6.413  84.682   1.251  1.00 25.00           C
ATOM     84  CA  TRP    84       4.564  82.428  -1.185  1.00 25.00           C
ATOM     85  CA  LYS    85       2.117  81.982  -4.083  1.00 25.00           C
ATOM     86  CA  MET    86       1.024  84.898  -6.147  1.00 25.00           C
ATOM     87  CA  ASN    87      -0.546  87.555  -8.328  1.00 25.00           C
ATOM     88  CA  LYS    88      -2.948  89.654 -10.359  1.00 25.00           C
ATOM     89  CA  SER    89      -5.960  87.305 -10.644  1.00 25.00           C
ATOM     90  CA  ASN    90      -5.003  85.634  -7.334  1.00 25.00           C
ATOM     91  CA  LEU    91      -4.709  89.066  -5.658  1.00 25.00           C
ATOM     92  CA  ASN    92      -8.155  90.047  -7.011  1.00 25.00           C
ATOM     93  CA  SER    93      -9.638  86.778  -5.677  1.00 25.00           C
ATOM     94  CA  LEU    94      -8.064  87.434  -2.249  1.00 25.00           C
ATOM     95  CA  ASP    95      -9.515  90.978  -2.233  1.00 25.00           C
ATOM     96  CA  GLU    96     -12.971  89.595  -3.128  1.00 25.00           C
ATOM     97  CA  GLN    97     -12.707  87.033  -0.293  1.00 25.00           C
ATOM     98  CA  GLU    98     -15.101  88.673   2.215  1.00 25.00           C
ATOM     99  CA  GLY    99     -14.423  91.704   4.391  1.00 25.00           C
ATOM    100  CA  VAL   100     -10.682  92.166   4.900  1.00 25.00           C
ATOM    101  CA  LYS   101     -10.838  94.684   2.125  1.00 25.00           C
ATOM    102  CA  SER   102      -9.175  96.776  -0.513  1.00 25.00           C
ATOM    103  CA  GLY   103      -8.351  99.036   2.431  1.00 25.00           C
ATOM    104  CA  MET   104      -6.026  96.216   3.475  1.00 25.00           C
ATOM    105  CA  TYR   105      -2.509  97.616   3.946  1.00 25.00           C
ATOM    106  CA  VAL   106      -0.731  95.368   1.533  1.00 25.00           C
ATOM    107  CA  VAL   107       2.118  97.824   2.028  1.00 25.00           C
ATOM    108  CA  ILE   108       4.979  95.587   0.780  1.00 25.00           C
ATOM    109  CA  GLU   109       4.697  93.608  -2.508  1.00 25.00           C
ATOM    110  CA  VAL   110       7.781  91.867  -1.123  1.00 25.00           C
ATOM    111  CA  LYS   111      10.883  90.328  -2.688  1.00 25.00           C
ATOM    112  CA  VAL   112       9.339  89.319  -5.981  1.00 25.00           C
ATOM    113  CA  ALA   113      12.655  87.577  -6.586  1.00 25.00           C
ATOM    114  CA  THR   114      15.697  85.353  -7.098  1.00 25.00           C
ATOM    115  CA  GLN   115      17.241  87.965  -9.368  1.00 25.00           C
ATOM    116  CA  GLU   116      20.192  85.775 -10.311  1.00 25.00           C
ATOM    117  CA  GLY   117      22.269  86.724  -7.213  1.00 25.00           C
ATOM    118  CA  LYS   118      19.866  87.167  -4.299  1.00 25.00           C
ATOM    119  CA  GLU   119      17.285  88.235  -1.701  1.00 25.00           C
ATOM    120  CA  ILE   120      13.923  86.509  -1.496  1.00 25.00           C
ATOM    121  CA  THR   121      11.631  83.511  -0.840  1.00 25.00           C
ATOM    122  CA  CYS   122       8.851  84.749  -3.122  1.00 25.00           C
ATOM    123  CA  ARG   123       5.667  86.761  -3.574  1.00 25.00           C
ATOM    124  CA  SER   124       3.557  88.229  -0.855  1.00 25.00           C
ATOM    125  CA  TYR   125       3.170  90.994   1.708  1.00 25.00           C
ATOM    126  CA  LEU   126       2.506  93.353   4.569  1.00 25.00           C
ATOM    127  CA  MET   127       0.057  94.744   7.217  1.00 25.00           C
ATOM    128  CA  THR   128      -3.530  94.985   8.361  1.00 25.00           C
ATOM    129  CA  ASN   129      -7.048  96.276   8.372  1.00 25.00           C
ATOM    130  CA  TYR   130     -10.750  96.583   7.364  1.00 25.00           C
ATOM    131  CA  GLU   131     -13.728  98.667   8.529  1.00 25.00           C
ATOM    132  CA  SER   132     -14.042  99.598  12.248  1.00 25.00           C
ATOM    133  CA  ALA   133     -16.271  98.136  14.901  1.00 25.00           C
ATOM    134  CA  PRO   134     -14.778  94.859  13.829  1.00 25.00           C
ATOM    135  CA  PRO   135     -11.124  95.383  14.903  1.00 25.00           C
TER
END
