
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  104 (  104),  selected  104 , name T0341TS168_2-D2
# Molecule2: number of CA atoms  104 (  810),  selected  104 , name T0341_D2.pdb
# PARAMETERS: T0341TS168_2-D2.T0341_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   104        75 - 178         3.92     3.92
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35       144 - 178         1.93     4.44
  LCS_AVERAGE:     22.97

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       155 - 170         0.78     6.28
  LONGEST_CONTINUOUS_SEGMENT:    16       156 - 171         0.93     6.48
  LCS_AVERAGE:      8.43

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  104
LCS_GDT     S      75     S      75     12   17  104    11   13   21   35   45   55   61   68   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L      76     L      76     12   17  104    11   13   21   35   45   55   61   68   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     T      77     T      77     12   17  104    11   13   21   35   45   55   61   70   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A      78     A      78     12   17  104    11   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A      79     A      79     12   17  104    11   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     R      80     R      80     12   17  104    11   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     N      81     N      81     12   17  104    11   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L      82     L      82     12   17  104    11   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     I      83     I      83     12   17  104    11   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     E      84     E      84     12   17  104    11   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     Q      85     Q      85     12   17  104    11   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     K      86     K      86     12   17  104     3    3    6   11   30   40   48   63   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     Q      87     Q      87      3   17  104     3    3    5   15   23   35   50   61   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     V      88     V      88      3   17  104     3    3    4   19   23   40   48   53   72   86   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     R      89     R      89      3   17  104     3    3    6   20   30   40   57   70   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     P      90     P      90      3   17  104     3    3    9   19   30   40   57   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     M      91     M      91      4   17  104     3    4   15   20   29   39   53   70   81   86   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L      92     L      92      4    8  104     3    4   10   18   36   52   60   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L      93     L      93      4    8  104     3    6   16   26   33   47   59   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L      94     L      94      4    7  104     4    4    7   14   24   47   61   68   77   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     D      95     D      95      3    7  104     3    6   10   14   22   47   61   68   77   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     D      96     D      96      3    7  104     3    3    4    5   12   19   43   56   76   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     R      97     R      97      4    8  104     3    3   10   14   21   42   60   66   76   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A      98     A      98      5    8  104     3   10   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L      99     L      99      5    8  104     4    5    6   11   20   37   56   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     P     100     P     100      5    8  104     4    5    6    6    8   21   37   56   65   70   80   89   96   99  102  102  104  104  104  104 
LCS_GDT     E     101     E     101      5    8  104     4    5   11   21   37   45   56   63   71   77   87   95   98  101  102  103  104  104  104  104 
LCS_GDT     F     102     F     102      5    8  104     4    9   17   34   45   55   61   70   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     T     103     T     103      5    8  104     3    6   11   28   45   55   61   68   77   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     G     104     G     104      4   10  104     3    4   13   22   37   46   61   66   73   81   90   96  100  101  102  103  104  104  104  104 
LCS_GDT     V     105     V     105      4   10  104     3    4   13   22   37   48   61   66   75   86   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     Q     106     Q     106      4   10  104     3    4    8   28   45   55   61   66   76   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     T     107     T     107      4   10  104     0    4    7   23   45   55   61   66   77   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     Q     108     Q     108      3   11  104     1    3    9   17   34   52   61   66   76   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     D     109     D     109      4   12  104     0    4    7   18   35   52   61   68   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     P     110     P     110      4   12  104     1    4    8   18   32   52   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     N     111     N     111      5   12  104     3   12   20   23   33   47   57   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A     112     A     112      5   12  104     3    4   10   20   33   47   57   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     V     113     V     113      5   12  104     3    3   10   14   25   38   49   62   76   83   91   98  100  101  102  103  104  104  104  104 
LCS_GDT     V     114     V     114      5   12  104     4    6   10   16   30   47   57   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     I     115     I     115      5   12  104     4    5    6   16   26   47   57   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     G     116     G     116      5   12  104     4    9   20   26   33   47   57   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L     117     L     117      5   12  104     4    6   20   26   33   47   57   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A     118     A     118      5   12  104     3    4   20   24   31   46   57   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     P     119     P     119      5   20  104     3    5   20   26   33   47   59   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     E     120     E     120      5   20  104     4    6   15   26   36   48   59   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     H     121     H     121      3   20  104     3    3    5    6    9   16   40   55   75   86   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     F     122     F     122      3   28  104     3   11   13   29   42   55   60   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     H     123     H     123      3   28  104     3    6   17   32   42   55   60   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     Y     124     Y     124     14   28  104     9   12   20   26   33   42   51   62   69   78   89   94   97  101  102  103  104  104  104  104 
LCS_GDT     Q     125     Q     125     14   28  104    11   12   20   26   33   42   51   61   68   78   89   94   97  101  102  103  104  104  104  104 
LCS_GDT     L     126     L     126     14   28  104    11   12   20   26   33   46   55   68   79   85   91   98  100  101  102  103  104  104  104  104 
LCS_GDT     L     127     L     127     14   28  104    11   12   20   26   33   47   57   71   81   86   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     N     128     N     128     14   28  104    11   12   20   26   33   46   55   68   78   85   91   97  100  101  102  103  104  104  104  104 
LCS_GDT     Q     129     Q     129     14   28  104    11   12   20   26   33   47   57   70   81   85   92   98  100  101  102  103  104  104  104  104 
LCS_GDT     A     130     A     130     14   28  104    11   12   20   26   33   48   59   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     F     131     F     131     14   28  104    11   12   20   26   33   47   59   71   81   86   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     R     132     R     132     14   28  104    11   12   20   26   33   47   57   71   81   86   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L     133     L     133     14   28  104    11   12   20   26   33   47   59   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L     134     L     134     14   28  104    11   12   20   26   37   50   59   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L     135     L     135     14   28  104    11   12   20   26   33   47   57   71   81   86   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     D     136     D     136     14   28  104     8   14   20   29   42   55   60   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     G     137     G     137     14   28  104     4   16   21   29   42   55   60   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A     138     A     138      5   33  104     4   11   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     P     139     P     139      5   33  104     3    9   20   32   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L     140     L     140      5   33  104     3   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     I     141     I     141      5   33  104     3    4   11   23   43   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A     142     A     142      5   33  104     3    5   16   30   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     I     143     I     143      4   33  104     3    4   15   26   33   46   60   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     H     144     H     144      5   35  104     3    7   18   30   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     K     145     K     145      5   35  104     3    8   20   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A     146     A     146      5   35  104     3    7   15   26   41   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     R     147     R     147      5   35  104     3   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     Y     148     Y     148      5   35  104     3   14   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     Y     149     Y     149      6   35  104     3   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     K     150     K     150      6   35  104     3    6   18   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     R     151     R     151      6   35  104     4   16   21   28   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     K     152     K     152      6   35  104     4   16   21   27   39   50   61   68   78   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     D     153     D     153      6   35  104     4    5    9   25   38   50   61   68   78   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     G     154     G     154      6   35  104     4    5   13   28   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L     155     L     155     16   35  104     4    5   12   27   40   52   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A     156     A     156     16   35  104     4   10   21   28   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L     157     L     157     16   35  104     3   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     G     158     G     158     16   35  104     3   16   21   27   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     P     159     P     159     16   35  104     7   16   21   28   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     G     160     G     160     16   35  104    10   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     P     161     P     161     16   35  104    10   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     F     162     F     162     16   35  104    10   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     V     163     V     163     16   35  104    10   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     T     164     T     164     16   35  104    10   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A     165     A     165     16   35  104    10   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     L     166     L     166     16   35  104    10   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     E     167     E     167     16   35  104    10   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     Y     168     Y     168     16   35  104    10   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A     169     A     169     16   35  104    10   16   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     T     170     T     170     16   35  104     9   16   21   28   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     D     171     D     171     16   35  104     3    6   17   28   40   55   60   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     T     172     T     172      8   35  104     3    7   17   26   39   55   60   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     K     173     K     173      8   35  104     3   12   20   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     A     174     A     174      8   35  104     4   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     M     175     M     175      8   35  104     3   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     V     176     V     176      8   35  104     3    9   17   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     V     177     V     177      8   35  104     4   13   21   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_GDT     G     178     G     178      8   35  104     3    7   20   35   45   55   61   71   81   87   93   98  100  101  102  103  104  104  104  104 
LCS_AVERAGE  LCS_A:  43.80  (   8.43   22.97  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     16     21     35     45     55     61     71     81     87     93     98    100    101    102    103    104    104    104    104 
GDT PERCENT_CA  10.58  15.38  20.19  33.65  43.27  52.88  58.65  68.27  77.88  83.65  89.42  94.23  96.15  97.12  98.08  99.04 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.13   0.56   0.89   1.46   1.74   2.02   2.34   2.79   3.00   3.18   3.36   3.55   3.64   3.70   3.77   3.85   3.92   3.92   3.92   3.92
GDT RMS_ALL_CA   5.55   6.99   6.55   4.16   4.24   4.11   4.41   4.04   3.97   3.98   3.95   3.92   3.92   3.92   3.93   3.92   3.92   3.92   3.92   3.92

#      Molecule1      Molecule2       DISTANCE
LGA    S      75      S      75          4.844
LGA    L      76      L      76          5.013
LGA    T      77      T      77          4.749
LGA    A      78      A      78          3.677
LGA    A      79      A      79          3.326
LGA    R      80      R      80          3.946
LGA    N      81      N      81          3.295
LGA    L      82      L      82          2.154
LGA    I      83      I      83          2.944
LGA    E      84      E      84          3.295
LGA    Q      85      Q      85          2.306
LGA    K      86      K      86          5.285
LGA    Q      87      Q      87          6.203
LGA    V      88      V      88          6.212
LGA    R      89      R      89          5.141
LGA    P      90      P      90          4.469
LGA    M      91      M      91          4.881
LGA    L      92      L      92          3.755
LGA    L      93      L      93          3.529
LGA    L      94      L      94          5.561
LGA    D      95      D      95          5.572
LGA    D      96      D      96          5.210
LGA    R      97      R      97          6.940
LGA    A      98      A      98          3.805
LGA    L      99      L      99          4.525
LGA    P     100      P     100          9.944
LGA    E     101      E     101          9.512
LGA    F     102      F     102          4.075
LGA    T     103      T     103          6.478
LGA    G     104      G     104          9.097
LGA    V     105      V     105          7.687
LGA    Q     106      Q     106          6.919
LGA    T     107      T     107          6.681
LGA    Q     108      Q     108          7.923
LGA    D     109      D     109          4.965
LGA    P     110      P     110          3.954
LGA    N     111      N     111          3.930
LGA    A     112      A     112          3.952
LGA    V     113      V     113          5.150
LGA    V     114      V     114          3.722
LGA    I     115      I     115          3.741
LGA    G     116      G     116          3.463
LGA    L     117      L     117          3.525
LGA    A     118      A     118          3.783
LGA    P     119      P     119          3.436
LGA    E     120      E     120          3.022
LGA    H     121      H     121          4.849
LGA    F     122      F     122          2.126
LGA    H     123      H     123          0.897
LGA    Y     124      Y     124          6.760
LGA    Q     125      Q     125          6.801
LGA    L     126      L     126          4.821
LGA    L     127      L     127          3.401
LGA    N     128      N     128          5.061
LGA    Q     129      Q     129          4.378
LGA    A     130      A     130          2.573
LGA    F     131      F     131          3.166
LGA    R     132      R     132          3.782
LGA    L     133      L     133          2.830
LGA    L     134      L     134          2.635
LGA    L     135      L     135          3.239
LGA    D     136      D     136          1.939
LGA    G     137      G     137          1.997
LGA    A     138      A     138          1.499
LGA    P     139      P     139          3.034
LGA    L     140      L     140          1.495
LGA    I     141      I     141          2.871
LGA    A     142      A     142          2.028
LGA    I     143      I     143          3.280
LGA    H     144      H     144          1.054
LGA    K     145      K     145          1.274
LGA    A     146      A     146          1.996
LGA    R     147      R     147          1.075
LGA    Y     148      Y     148          0.669
LGA    Y     149      Y     149          1.783
LGA    K     150      K     150          3.822
LGA    R     151      R     151          3.250
LGA    K     152      K     152          5.153
LGA    D     153      D     153          4.754
LGA    G     154      G     154          2.179
LGA    L     155      L     155          3.579
LGA    A     156      A     156          2.869
LGA    L     157      L     157          1.541
LGA    G     158      G     158          2.831
LGA    P     159      P     159          2.704
LGA    G     160      G     160          2.159
LGA    P     161      P     161          1.102
LGA    F     162      F     162          0.774
LGA    V     163      V     163          0.950
LGA    T     164      T     164          2.055
LGA    A     165      A     165          2.291
LGA    L     166      L     166          1.124
LGA    E     167      E     167          2.014
LGA    Y     168      Y     168          3.247
LGA    A     169      A     169          2.958
LGA    T     170      T     170          2.598
LGA    D     171      D     171          3.111
LGA    T     172      T     172          3.545
LGA    K     173      K     173          1.990
LGA    A     174      A     174          2.273
LGA    M     175      M     175          2.559
LGA    V     176      V     176          3.581
LGA    V     177      V     177          3.730
LGA    G     178      G     178          2.825

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  104  104    4.0     71    2.79    54.087    50.145     2.459

LGA_LOCAL      RMSD =  2.787  Number of atoms =   71  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.169  Number of atoms =  104 
Std_ALL_ATOMS  RMSD =  3.916  (standard rmsd on all 104 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.958789 * X  +  -0.178083 * Y  +   0.221384 * Z  +  27.310892
  Y_new =  -0.242634 * X  +  -0.918620 * Y  +   0.311876 * Z  +  30.267151
  Z_new =   0.147828 * X  +  -0.352739 * Y  +  -0.923971 * Z  +  85.798569 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.776905    0.364687  [ DEG:  -159.1049     20.8951 ]
  Theta =  -0.148372   -2.993221  [ DEG:    -8.5011   -171.4989 ]
  Phi   =  -0.247860    2.893733  [ DEG:   -14.2013    165.7987 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0341TS168_2-D2                               
REMARK     2: T0341_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0341TS168_2-D2.T0341_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  104  104   4.0   71   2.79  50.145     3.92
REMARK  ---------------------------------------------------------- 
MOLECULE T0341TS168_2-D2
PFRMAT TS
TARGET T0341
MODEL 2
PARENT N/A
ATOM     75  CA  SER    75      19.560  28.008  86.673  1.00 25.00           C
ATOM     76  CA  LEU    76      16.342  26.308  85.481  1.00 25.00           C
ATOM     77  CA  THR    77      14.275  28.520  87.828  1.00 25.00           C
ATOM     78  CA  ALA    78      16.048  31.639  86.490  1.00 25.00           C
ATOM     79  CA  ALA    79      15.337  30.532  82.893  1.00 25.00           C
ATOM     80  CA  ARG    80      11.649  29.983  83.766  1.00 25.00           C
ATOM     81  CA  ASN    81      11.479  33.468  85.344  1.00 25.00           C
ATOM     82  CA  LEU    82      13.065  34.993  82.210  1.00 25.00           C
ATOM     83  CA  ILE    83      10.522  33.165  80.005  1.00 25.00           C
ATOM     84  CA  GLU    84       7.657  34.463  82.192  1.00 25.00           C
ATOM     85  CA  GLN    85       9.033  38.027  81.923  1.00 25.00           C
ATOM     86  CA  LYS    86       6.645  40.006  79.750  1.00 25.00           C
ATOM     87  CA  GLN    87       5.559  38.657  76.379  1.00 25.00           C
ATOM     88  CA  VAL    88       4.341  35.071  76.205  1.00 25.00           C
ATOM     89  CA  ARG    89       6.862  32.253  76.213  1.00 25.00           C
ATOM     90  CA  PRO    90       8.956  29.132  76.864  1.00 25.00           C
ATOM     91  CA  MET    91      12.536  27.936  76.966  1.00 25.00           C
ATOM     92  CA  LEU    92      15.934  26.347  76.087  1.00 25.00           C
ATOM     93  CA  LEU    93      18.784  24.760  78.018  1.00 25.00           C
ATOM     94  CA  LEU    94      21.457  24.474  75.273  1.00 25.00           C
ATOM     95  CA  ASP    95      22.761  21.233  76.878  1.00 25.00           C
ATOM     96  CA  ASP    96      23.406  18.554  79.452  1.00 25.00           C
ATOM     97  CA  ARG    97      19.605  18.479  79.933  1.00 25.00           C
ATOM     98  CA  ALA    98      18.050  19.262  83.345  1.00 25.00           C
ATOM     99  CA  LEU    99      16.626  22.541  81.969  1.00 25.00           C
ATOM    100  CA  PRO   100      15.157  20.672  78.967  1.00 25.00           C
ATOM    101  CA  GLU   101      13.571  18.096  81.316  1.00 25.00           C
ATOM    102  CA  PHE   102      12.072  20.913  83.434  1.00 25.00           C
ATOM    103  CA  THR   103       9.143  20.529  81.089  1.00 25.00           C
ATOM    104  CA  GLY   104       6.858  19.588  78.220  1.00 25.00           C
ATOM    105  CA  VAL   105       8.002  22.663  76.263  1.00 25.00           C
ATOM    106  CA  GLN   106       5.017  22.558  73.856  1.00 25.00           C
ATOM    107  CA  THR   107       7.647  23.058  71.118  1.00 25.00           C
ATOM    108  CA  GLN   108       7.991  24.460  67.594  1.00 25.00           C
ATOM    109  CA  ASP   109       7.860  27.877  69.301  1.00 25.00           C
ATOM    110  CA  PRO   110      10.670  29.237  71.573  1.00 25.00           C
ATOM    111  CA  ASN   111      12.461  31.957  73.568  1.00 25.00           C
ATOM    112  CA  ALA   112      15.569  32.444  75.738  1.00 25.00           C
ATOM    113  CA  VAL   113      17.993  30.710  78.104  1.00 25.00           C
ATOM    114  CA  VAL   114      20.547  28.918  80.278  1.00 25.00           C
ATOM    115  CA  ILE   115      23.350  26.398  80.460  1.00 25.00           C
ATOM    116  CA  GLY   116      26.939  27.508  80.282  1.00 25.00           C
ATOM    117  CA  LEU   117      29.718  24.901  80.840  1.00 25.00           C
ATOM    118  CA  ALA   118      26.997  22.869  79.222  1.00 25.00           C
ATOM    119  CA  PRO   119      28.331  19.323  78.928  1.00 25.00           C
ATOM    120  CA  GLU   120      27.697  16.148  76.903  1.00 25.00           C
ATOM    121  CA  HIS   121      27.234  14.348  73.662  1.00 25.00           C
ATOM    122  CA  PHE   122      27.603  17.415  71.486  1.00 25.00           C
ATOM    123  CA  HIS   123      25.389  15.986  68.773  1.00 25.00           C
ATOM    124  CA  TYR   124      22.382  14.468  70.606  1.00 25.00           C
ATOM    125  CA  GLN   125      18.812  15.350  71.674  1.00 25.00           C
ATOM    126  CA  LEU   126      20.097  18.474  73.479  1.00 25.00           C
ATOM    127  CA  LEU   127      22.055  19.504  70.353  1.00 25.00           C
ATOM    128  CA  ASN   128      18.923  19.021  68.202  1.00 25.00           C
ATOM    129  CA  GLN   129      16.887  21.155  70.645  1.00 25.00           C
ATOM    130  CA  ALA   130      19.559  23.896  70.516  1.00 25.00           C
ATOM    131  CA  PHE   131      19.501  23.807  66.688  1.00 25.00           C
ATOM    132  CA  ARG   132      15.681  24.096  66.716  1.00 25.00           C
ATOM    133  CA  LEU   133      15.900  27.082  69.103  1.00 25.00           C
ATOM    134  CA  LEU   134      18.476  28.754  66.816  1.00 25.00           C
ATOM    135  CA  LEU   135      16.196  28.186  63.791  1.00 25.00           C
ATOM    136  CA  ASP   136      12.865  29.922  63.271  1.00 25.00           C
ATOM    137  CA  GLY   137      12.411  32.858  65.647  1.00 25.00           C
ATOM    138  CA  ALA   138      14.619  32.388  68.641  1.00 25.00           C
ATOM    139  CA  PRO   139      17.210  34.884  69.720  1.00 25.00           C
ATOM    140  CA  LEU   140      18.678  32.045  71.778  1.00 25.00           C
ATOM    141  CA  ILE   141      21.307  31.152  74.374  1.00 25.00           C
ATOM    142  CA  ALA   142      24.027  29.563  76.525  1.00 25.00           C
ATOM    143  CA  ILE   143      24.978  32.246  78.962  1.00 25.00           C
ATOM    144  CA  HIS   144      28.331  32.145  80.734  1.00 25.00           C
ATOM    145  CA  LYS   145      29.665  31.811  77.148  1.00 25.00           C
ATOM    146  CA  ALA   146      33.324  30.832  77.826  1.00 25.00           C
ATOM    147  CA  ARG   147      35.490  27.780  77.149  1.00 25.00           C
ATOM    148  CA  TYR   148      37.083  24.766  78.830  1.00 25.00           C
ATOM    149  CA  TYR   149      35.879  22.776  81.801  1.00 25.00           C
ATOM    150  CA  LYS   150      36.720  19.128  82.423  1.00 25.00           C
ATOM    151  CA  ARG   151      37.568  15.695  81.023  1.00 25.00           C
ATOM    152  CA  LYS   152      40.494  13.374  80.381  1.00 25.00           C
ATOM    153  CA  ASP   153      42.373  15.180  77.624  1.00 25.00           C
ATOM    154  CA  GLY   154      41.978  18.558  79.425  1.00 25.00           C
ATOM    155  CA  LEU   155      40.834  19.874  76.044  1.00 25.00           C
ATOM    156  CA  ALA   156      37.226  18.929  75.248  1.00 25.00           C
ATOM    157  CA  LEU   157      35.258  22.027  74.328  1.00 25.00           C
ATOM    158  CA  GLY   158      32.589  21.541  77.033  1.00 25.00           C
ATOM    159  CA  PRO   159      29.671  23.360  75.407  1.00 25.00           C
ATOM    160  CA  GLY   160      30.353  27.027  76.275  1.00 25.00           C
ATOM    161  CA  PRO   161      32.328  27.455  73.023  1.00 25.00           C
ATOM    162  CA  PHE   162      29.448  25.893  71.039  1.00 25.00           C
ATOM    163  CA  VAL   163      26.962  28.260  72.737  1.00 25.00           C
ATOM    164  CA  THR   164      29.194  31.255  71.887  1.00 25.00           C
ATOM    165  CA  ALA   165      29.394  30.100  68.241  1.00 25.00           C
ATOM    166  CA  LEU   166      25.581  29.760  68.113  1.00 25.00           C
ATOM    167  CA  GLU   167      25.193  33.285  69.559  1.00 25.00           C
ATOM    168  CA  TYR   168      27.629  34.654  66.941  1.00 25.00           C
ATOM    169  CA  ALA   169      25.659  32.907  64.159  1.00 25.00           C
ATOM    170  CA  THR   170      22.396  34.397  65.500  1.00 25.00           C
ATOM    171  CA  ASP   171      21.972  38.022  64.464  1.00 25.00           C
ATOM    172  CA  THR   172      19.732  38.680  67.388  1.00 25.00           C
ATOM    173  CA  LYS   173      22.599  38.377  69.848  1.00 25.00           C
ATOM    174  CA  ALA   174      21.438  36.292  72.763  1.00 25.00           C
ATOM    175  CA  MET   175      19.423  36.279  76.062  1.00 25.00           C
ATOM    176  CA  VAL   176      20.893  35.154  79.349  1.00 25.00           C
ATOM    177  CA  VAL   177      19.949  33.014  82.278  1.00 25.00           C
ATOM    178  CA  GLY   178      23.516  33.622  83.588  1.00 25.00           C
TER
END
