
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  116 (  116),  selected  116 , name T0323TS393_2-D2
# Molecule2: number of CA atoms  116 (  868),  selected  116 , name T0323_D2.pdb
# PARAMETERS: T0323TS393_2-D2.T0323_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   107        35 - 141         5.00     5.64
  LONGEST_CONTINUOUS_SEGMENT:   107        36 - 142         4.98     5.62
  LONGEST_CONTINUOUS_SEGMENT:   107        37 - 143         4.96     5.60
  LCS_AVERAGE:     89.48

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        42 - 69          1.93     9.22
  LCS_AVERAGE:     15.06

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        52 - 69          0.95     8.14
  LCS_AVERAGE:      9.34

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  116
LCS_GDT     P      34     P      34      4    7  106     4    4    4    6   13   22   28   34   38   52   56   74   79   86   90   93   99  105  106  108 
LCS_GDT     T      35     T      35      4    7  107     4    4    4    6    9   22   29   44   60   70   78   83   89   92   95  101  103  106  109  111 
LCS_GDT     K      36     K      36      4    7  107     4    4    4    5    8   11   14   34   38   44   55   63   74   86   90   94  102  105  107  111 
LCS_GDT     P      37     P      37      4   15  107     4    5   11   22   31   41   56   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     N      38     N      38     13   15  107     0    4   18   21   31   43   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     P      39     P      39     13   20  107    12   18   21   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     F      40     F      40     13   20  107    12   14   18   21   32   41   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     Q      41     Q      41     13   20  107    12   14   14   25   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     S      42     S      42     13   28  107    12   18   21   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     L      43     L      43     13   28  107    12   14   18   22   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     V      44     V      44     13   28  107    12   14   14   19   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     S      45     S      45     13   28  107    12   15   21   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     S      46     S      46     13   28  107    12   14   18   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     I      47     I      47     13   28  107    12   14   14   20   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     V      48     V      48     13   28  107    12   14   14   25   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     E      49     E      49     13   28  107    12   14   18   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     Q      50     Q      50     13   28  107     9   14   14   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     Q      51     Q      51      3   28  107     3    6   18   20   27   41   55   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     L      52     L      52     18   28  107     3    4    9   24   29   35   48   56   67   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     S      53     S      53     18   28  107     3    4   20   24   29   34   42   54   67   76   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     I      54     I      54     18   28  107     3   10   21   23   29   34   42   52   64   76   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     K      55     K      55     18   28  107    11   18   21   24   29   35   42   56   67   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     A      56     A      56     18   28  107    12   18   21   24   29   35   42   54   67   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     A      57     A      57     18   28  107    12   18   21   24   29   41   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     S      58     S      58     18   28  107    12   18   21   24   32   43   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     A      59     A      59     18   28  107    12   18   21   24   32   43   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     I      60     I      60     18   28  107    12   18   21   24   32   43   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     Y      61     Y      61     18   28  107    12   18   21   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     G      62     G      62     18   28  107    12   18   21   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     R      63     R      63     18   28  107    12   18   21   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     V      64     V      64     18   28  107    12   18   21   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     E      65     E      65     18   28  107    12   18   21   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     Q      66     Q      66     18   28  107    12   18   21   26   33   44   57   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     L      67     L      67     18   28  107    12   18   21   24   29   36   48   61   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     V      68     V      68     18   28  107    12   18   21   24   29   36   46   59   71   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     G      69     G      69     18   28  107     4   16   21   24   29   36   48   60   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     G      70     G      70      7   20  107     3    6    7    8   16   24   40   54   70   76   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     A      71     A      71      7    9  107     3    6    7    8    8   10   27   31   39   52   69   81   87   90   95   98  103  106  108  111 
LCS_GDT     L      72     L      72      7    9  107     4    6    7    8    8   10   27   31   39   47   66   81   87   92   96  101  105  108  109  111 
LCS_GDT     E      73     E      73      7    9  107     4    6    7    8    8   10   15   19   27   34   47   52   69   80   89   94  100  103  106  109 
LCS_GDT     K      74     K      74      7    9  107     3    6    8    9    9   11   13   18   24   31   38   48   59   77   83   94  100  103  106  109 
LCS_GDT     P      75     P      75      7    9  107     3    6    8    9    9   12   19   24   37   55   69   79   88   92  100  104  107  108  109  111 
LCS_GDT     E      76     E      76      7    9  107     4    6    8    9   10   18   32   49   60   72   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     Q      77     Q      77      7    8  107     4    6    8    9    9   16   35   45   58   71   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     L      78     L      78      7    8  107     4    6    8   20   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     Y      79     Y      79      7   12  107     4    8   17   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     R      80     R      80      9   13  107     3    7   12   22   32   41   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     V      81     V      81      9   13  107     3    5   11   18   31   41   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     S      82     S      82      9   13  107     3    7    9   13   28   41   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     D      83     D      83      9   13  107     6    7    9   13   27   41   55   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     E      84     E      84      9   13  107     6    7    9   18   32   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     A      85     A      85      9   13  107     6   13   17   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     L      86     L      86      9   13  107     6   10   17   19   32   43   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     R      87     R      87      9   13  107     6   11   17   22   32   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     Q      88     Q      88      9   13  107     6    7   17   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     A      89     A      89      8   13  107     4    6    9   21   31   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     G      90     G      90      8   13  107     4    5    9   12   26   41   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     V      91     V      91      4   13  107     3    4    4    5    6    8   13   39   62   75   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     S      92     S      92      4   17  107     3    4    4   12   29   41   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     K      93     K      93     15   17  107    15   15   18   24   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     R      94     R      94     15   17  107    15   15   18   24   32   41   55   64   72   76   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     K      95     K      95     15   17  107    15   15   18   24   32   41   55   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     I      96     I      96     15   17  107    15   15   18   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     E      97     E      97     15   17  107    15   15   18   24   33   44   57   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     Y      98     Y      98     15   17  107    15   15   18   24   33   41   56   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     I      99     I      99     15   17  107    15   15   18   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     R     100     R     100     15   17  107    15   15   18   24   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     H     101     H     101     15   17  107    15   15   18   24   33   41   55   64   72   76   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     V     102     V     102     15   17  107    15   15   18   24   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     C     103     C     103     15   17  107    15   15   18   24   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     E     104     E     104     15   17  107    15   15   18   24   32   41   47   59   71   75   80   87   91   98  102  104  107  108  109  111 
LCS_GDT     H     105     H     105     15   17  107    15   15   18   24   32   41   47   55   71   74   80   87   91   98  102  104  107  108  109  111 
LCS_GDT     V     106     V     106     15   17  107    15   15   18   24   32   41   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     E     107     E     107     15   17  107    15   15   18   24   32   36   45   54   60   67   77   83   91   96  102  104  107  108  109  111 
LCS_GDT     S     108     S     108      3   17  107     3    5   12   20   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     G     109     G     109      3   17  107     3    6   12   21   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     R     110     R     110      3    6  107     3    3    5    8   14   29   44   58   68   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     L     111     L     111      3    6  107     5    9   17   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     D     112     D     112      3    6  107     1    7   12   24   32   41   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     F     113     F     113      5    6  107     5    5   12   24   32   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     T     114     T     114      5    6  107     5    5   17   24   32   41   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     E     115     E     115      5    6  107     5    5   12   13   15   19   33   50   57   71   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     L     116     L     116      5   16  107     5    5    6    7   11   30   44   52   62   74   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     E     117     E     117      5   16  107     5    5    7   13   19   30   38   52   67   75   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     G     118     G     118      4   16  107     3    4   10   17   33   41   55   65   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     A     119     A     119     11   16  107     3    5   12   20   33   41   55   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     E     120     E     120     12   16  107     3    4   10   16   29   41   55   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     A     121     A     121     12   16  107     8   14   17   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     T     122     T     122     12   16  107     8   14   17   26   33   44   57   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     T     123     T     123     12   16  107    12   18   21   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     V     124     V     124     12   16  107     8   18   21   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     I     125     I     125     12   16  107     8   10   19   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     E     126     E     126     12   16  107     8   12   19   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     K     127     K     127     12   16  107     8   10   17   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     L     128     L     128     12   16  107     8   10   13   25   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     T     129     T     129     12   16  107     8   10   12   14   29   42   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     A     130     A     130     12   16  107     5   10   17   26   33   44   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     I     131     I     131     12   16  107     3    9   12   14   24   43   58   66   72   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     K     132     K     132      3   16  107     3    3    6   13   18   21   40   56   67   77   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     G     133     G     133      4   16  107     3    3    6   12   15   23   28   38   46   57   69   79   91   98  102  104  107  108  109  111 
LCS_GDT     I     134     I     134      4   16  107     0    3    4    8   10   13   20   24   39   53   64   74   90   98  102  104  107  108  109  111 
LCS_GDT     G     135     G     135      4   16  107     0    3   10   14   17   23   30   38   46   54   69   84   93   98  102  104  107  108  109  111 
LCS_GDT     Q     136     Q     136     11   16  107     9   10   12   13   15   16   21   23   28   44   55   68   80   90   95  103  107  108  109  111 
LCS_GDT     W     137     W     137     11   16  107     9   10   12   13   15   16   21   31   36   52   62   71   84   91   99  104  107  108  109  111 
LCS_GDT     T     138     T     138     11   16  107     9   10   12   13   15   23   30   38   53   71   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     A     139     A     139     11   16  107     9   10   12   13   15   17   29   40   54   64   80   86   93   98  102  104  107  108  109  111 
LCS_GDT     E     140     E     140     11   16  107     9   10   12   13   15   23   28   38   46   55   66   76   87   97  102  104  107  108  109  111 
LCS_GDT     M     141     M     141     11   16  107     9   10   12   13   20   24   30   45   55   65   77   86   93   98  102  104  107  108  109  111 
LCS_GDT     F     142     F     142     11   16  107     9   10   12   13   20   24   35   50   62   75   81   88   93   98  102  104  107  108  109  111 
LCS_GDT     M     143     M     143     11   16  107     9   10   12   13   15   20   29   40   54   59   67   79   90   97  102  104  107  108  109  111 
LCS_GDT     M     144     M     144     11   16   70     9   10   12   13   15   23   28   36   46   54   64   75   87   96   99  104  107  108  109  111 
LCS_GDT     F     145     F     145     11   16   70     5   10   11   13   15   20   29   40   54   64   73   85   91   98  102  104  107  108  109  111 
LCS_GDT     S     146     S     146     11   16   39     3    6   11   12   14   15   21   26   36   45   61   69   84   92   98  103  107  108  109  111 
LCS_GDT     L     147     L     147      4   16   31     3    4    4    9   14   15   16   24   35   48   61   68   84   90   91   98  103  107  109  110 
LCS_GDT     G     148     G     148      3   15   31     3    3    4    5    6   13   21   23   33   44   61   68   80   90   91   98  103  107  109  110 
LCS_GDT     R     149     R     149      3    4   31     3    3    4   16   21   32   42   52   62   73   81   86   93   98  102  104  107  108  109  111 
LCS_AVERAGE  LCS_A:  37.96  (   9.34   15.06   89.48 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     18     21     26     33     44     58     66     72     77     81     88     93     98    102    104    107    108    109    111 
GDT PERCENT_CA  12.93  15.52  18.10  22.41  28.45  37.93  50.00  56.90  62.07  66.38  69.83  75.86  80.17  84.48  87.93  89.66  92.24  93.10  93.97  95.69
GDT RMS_LOCAL    0.23   0.50   6.94   1.43   1.76   2.16   2.59   2.75   2.91   3.21   3.41   3.70   4.02   4.26   4.50   4.61   4.82   4.88   4.94   5.09
GDT RMS_ALL_CA   9.57   7.54   7.54   6.15   6.15   6.12   5.96   5.98   6.00   5.82   5.88   5.81   5.65   5.62   5.59   5.58   5.59   5.58   5.57   5.55

#      Molecule1      Molecule2       DISTANCE
LGA    P      34      P      34          9.634
LGA    T      35      T      35          6.804
LGA    K      36      K      36          8.717
LGA    P      37      P      37          3.838
LGA    N      38      N      38          3.229
LGA    P      39      P      39          2.384
LGA    F      40      F      40          3.299
LGA    Q      41      Q      41          1.773
LGA    S      42      S      42          1.263
LGA    L      43      L      43          3.152
LGA    V      44      V      44          2.773
LGA    S      45      S      45          0.669
LGA    S      46      S      46          1.981
LGA    I      47      I      47          2.831
LGA    V      48      V      48          2.075
LGA    E      49      E      49          0.749
LGA    Q      50      Q      50          1.611
LGA    Q      51      Q      51          3.906
LGA    L      52      L      52          6.375
LGA    S      53      S      53          7.658
LGA    I      54      I      54          7.294
LGA    K      55      K      55          6.381
LGA    A      56      A      56          5.997
LGA    A      57      A      57          4.102
LGA    S      58      S      58          3.099
LGA    A      59      A      59          2.903
LGA    I      60      I      60          2.824
LGA    Y      61      Y      61          0.869
LGA    G      62      G      62          0.432
LGA    R      63      R      63          1.443
LGA    V      64      V      64          2.712
LGA    E      65      E      65          2.819
LGA    Q      66      Q      66          3.210
LGA    L      67      L      67          4.526
LGA    V      68      V      68          5.311
LGA    G      69      G      69          4.983
LGA    G      70      G      70          5.158
LGA    A      71      A      71          9.046
LGA    L      72      L      72          8.287
LGA    E      73      E      73         11.580
LGA    K      74      K      74         11.919
LGA    P      75      P      75          8.752
LGA    E      76      E      76          7.066
LGA    Q      77      Q      77          7.071
LGA    L      78      L      78          2.843
LGA    Y      79      Y      79          1.141
LGA    R      80      R      80          3.711
LGA    V      81      V      81          3.551
LGA    S      82      S      82          3.707
LGA    D      83      D      83          3.962
LGA    E      84      E      84          3.022
LGA    A      85      A      85          1.358
LGA    L      86      L      86          2.708
LGA    R      87      R      87          2.163
LGA    Q      88      Q      88          1.957
LGA    A      89      A      89          2.562
LGA    G      90      G      90          3.939
LGA    V      91      V      91          6.196
LGA    S      92      S      92          3.524
LGA    K      93      K      93          2.927
LGA    R      94      R      94          4.586
LGA    K      95      K      95          3.990
LGA    I      96      I      96          1.973
LGA    E      97      E      97          3.372
LGA    Y      98      Y      98          3.818
LGA    I      99      I      99          1.597
LGA    R     100      R     100          2.532
LGA    H     101      H     101          4.228
LGA    V     102      V     102          3.022
LGA    C     103      C     103          2.885
LGA    E     104      E     104          5.039
LGA    H     105      H     105          5.261
LGA    V     106      V     106          3.709
LGA    E     107      E     107          6.047
LGA    S     108      S     108          3.136
LGA    G     109      G     109          3.018
LGA    R     110      R     110          5.576
LGA    L     111      L     111          1.865
LGA    D     112      D     112          3.545
LGA    F     113      F     113          2.582
LGA    T     114      T     114          3.615
LGA    E     115      E     115          6.857
LGA    L     116      L     116          6.964
LGA    E     117      E     117          6.570
LGA    G     118      G     118          4.510
LGA    A     119      A     119          3.741
LGA    E     120      E     120          4.379
LGA    A     121      A     121          1.906
LGA    T     122      T     122          2.926
LGA    T     123      T     123          2.794
LGA    V     124      V     124          0.947
LGA    I     125      I     125          1.786
LGA    E     126      E     126          2.288
LGA    K     127      K     127          0.829
LGA    L     128      L     128          1.453
LGA    T     129      T     129          3.167
LGA    A     130      A     130          2.441
LGA    I     131      I     131          3.009
LGA    K     132      K     132          6.229
LGA    G     133      G     133          9.306
LGA    I     134      I     134         10.154
LGA    G     135      G     135          9.900
LGA    Q     136      Q     136         12.628
LGA    W     137      W     137         11.937
LGA    T     138      T     138          8.406
LGA    A     139      A     139          9.018
LGA    E     140      E     140         11.526
LGA    M     141      M     141          9.729
LGA    F     142      F     142          7.763
LGA    M     143      M     143         10.844
LGA    M     144      M     144         12.624
LGA    F     145      F     145         10.378
LGA    S     146      S     146         11.514
LGA    L     147      L     147         13.490
LGA    G     148      G     148         14.516
LGA    R     149      R     149          8.224

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  116  116    4.0     66    2.75    46.121    39.911     2.315

LGA_LOCAL      RMSD =  2.751  Number of atoms =   66  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.936  Number of atoms =  116 
Std_ALL_ATOMS  RMSD =  5.551  (standard rmsd on all 116 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.705144 * X  +   0.270780 * Y  +   0.655324 * Z  +   8.440144
  Y_new =   0.676725 * X  +  -0.018928 * Y  +   0.735993 * Z  +  39.929031
  Z_new =   0.211696 * X  +   0.962455 * Y  +  -0.169897 * Z  +   1.421228 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.745520   -1.396072  [ DEG:   100.0110    -79.9890 ]
  Theta =  -0.213310   -2.928282  [ DEG:   -12.2218   -167.7782 ]
  Phi   =   2.376758   -0.764835  [ DEG:   136.1782    -43.8218 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0323TS393_2-D2                               
REMARK     2: T0323_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0323TS393_2-D2.T0323_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  116  116   4.0   66   2.75  39.911     5.55
REMARK  ---------------------------------------------------------- 
MOLECULE T0323TS393_2-D2
PFRMAT TS
TARGET T0323
MODEL 2
PARENT N/A
ATOM     34  CA  PRO    34      27.754  27.169   0.392  1.00 25.00           C
ATOM     35  CA  THR    35      25.287  27.397  -2.566  1.00 25.00           C
ATOM     36  CA  LYS    36      25.839  30.141  -5.200  1.00 25.00           C
ATOM     37  CA  PRO    37      22.982  31.066  -7.582  1.00 25.00           C
ATOM     38  CA  ASN    38      20.590  33.989  -7.375  1.00 25.00           C
ATOM     39  CA  PRO    39      17.736  35.485  -5.342  1.00 25.00           C
ATOM     40  CA  PHE    40      16.185  38.896  -6.130  1.00 25.00           C
ATOM     41  CA  GLN    41      13.105  37.178  -7.624  1.00 25.00           C
ATOM     42  CA  SER    42      12.778  34.991  -4.497  1.00 25.00           C
ATOM     43  CA  LEU    43      13.024  38.098  -2.270  1.00 25.00           C
ATOM     44  CA  VAL    44      10.318  39.834  -4.351  1.00 25.00           C
ATOM     45  CA  SER    45       8.064  36.753  -4.036  1.00 25.00           C
ATOM     46  CA  SER    46       8.604  36.715  -0.244  1.00 25.00           C
ATOM     47  CA  ILE    47       7.723  40.437  -0.056  1.00 25.00           C
ATOM     48  CA  VAL    48       4.540  39.811  -2.094  1.00 25.00           C
ATOM     49  CA  GLU    49       3.580  36.935   0.245  1.00 25.00           C
ATOM     50  CA  GLN    50       4.147  39.189   3.290  1.00 25.00           C
ATOM     51  CA  GLN    51       1.963  41.910   1.713  1.00 25.00           C
ATOM     52  CA  LEU    52      -1.854  42.091   1.486  1.00 25.00           C
ATOM     53  CA  SER    53      -3.581  38.994   2.849  1.00 25.00           C
ATOM     54  CA  ILE    54      -1.442  36.075   1.560  1.00 25.00           C
ATOM     55  CA  LYS    55      -3.631  33.313   0.063  1.00 25.00           C
ATOM     56  CA  ALA    56      -4.066  35.362  -3.144  1.00 25.00           C
ATOM     57  CA  ALA    57      -0.278  35.884  -3.354  1.00 25.00           C
ATOM     58  CA  SER    58       0.290  32.123  -2.896  1.00 25.00           C
ATOM     59  CA  ALA    59      -2.248  31.379  -5.667  1.00 25.00           C
ATOM     60  CA  ILE    60      -0.486  33.867  -7.984  1.00 25.00           C
ATOM     61  CA  TYR    61       2.887  32.218  -7.230  1.00 25.00           C
ATOM     62  CA  GLY    62       1.402  28.772  -7.996  1.00 25.00           C
ATOM     63  CA  ARG    63      -0.007  30.088 -11.304  1.00 25.00           C
ATOM     64  CA  VAL    64       3.415  31.547 -12.211  1.00 25.00           C
ATOM     65  CA  GLU    65       5.085  28.194 -11.408  1.00 25.00           C
ATOM     66  CA  GLN    66       2.530  26.370 -13.602  1.00 25.00           C
ATOM     67  CA  LEU    67       3.197  28.827 -16.464  1.00 25.00           C
ATOM     68  CA  VAL    68       6.968  28.268 -16.098  1.00 25.00           C
ATOM     69  CA  GLY    69       6.444  24.617 -17.085  1.00 25.00           C
ATOM     70  CA  GLY    70       9.435  25.286 -19.333  1.00 25.00           C
ATOM     71  CA  ALA    71      10.007  27.645 -22.202  1.00 25.00           C
ATOM     72  CA  LEU    72      10.349  31.220 -21.068  1.00 25.00           C
ATOM     73  CA  GLU    73       9.114  32.382 -24.475  1.00 25.00           C
ATOM     74  CA  LYS    74       5.454  32.868 -23.556  1.00 25.00           C
ATOM     75  CA  PRO    75       6.561  35.075 -20.724  1.00 25.00           C
ATOM     76  CA  GLU    76       5.235  37.841 -23.018  1.00 25.00           C
ATOM     77  CA  GLN    77       1.911  37.859 -21.115  1.00 25.00           C
ATOM     78  CA  LEU    78       3.790  38.114 -17.788  1.00 25.00           C
ATOM     79  CA  TYR    79       5.858  41.033 -19.150  1.00 25.00           C
ATOM     80  CA  ARG    80       2.660  42.792 -20.310  1.00 25.00           C
ATOM     81  CA  VAL    81      -0.645  42.128 -18.458  1.00 25.00           C
ATOM     82  CA  SER    82      -3.663  42.784 -20.724  1.00 25.00           C
ATOM     83  CA  ASP    83      -5.318  43.674 -17.367  1.00 25.00           C
ATOM     84  CA  GLU    84      -7.052  40.264 -17.176  1.00 25.00           C
ATOM     85  CA  ALA    85      -3.696  38.571 -16.442  1.00 25.00           C
ATOM     86  CA  LEU    86      -2.983  41.125 -13.679  1.00 25.00           C
ATOM     87  CA  ARG    87      -6.443  40.488 -12.164  1.00 25.00           C
ATOM     88  CA  GLN    88      -5.810  36.713 -12.245  1.00 25.00           C
ATOM     89  CA  ALA    89      -5.218  37.227  -8.552  1.00 25.00           C
ATOM     90  CA  GLY    90      -8.262  39.182  -7.208  1.00 25.00           C
ATOM     91  CA  VAL    91      -7.490  41.200  -4.040  1.00 25.00           C
ATOM     92  CA  SER    92      -6.131  44.673  -4.422  1.00 25.00           C
ATOM     93  CA  LYS    93      -3.761  42.966  -6.926  1.00 25.00           C
ATOM     94  CA  ARG    94      -1.506  42.819  -3.834  1.00 25.00           C
ATOM     95  CA  LYS    95       0.775  40.292  -5.588  1.00 25.00           C
ATOM     96  CA  ILE    96       0.968  42.564  -8.665  1.00 25.00           C
ATOM     97  CA  GLU    97       1.857  45.548  -6.437  1.00 25.00           C
ATOM     98  CA  TYR    98       4.596  43.487  -4.727  1.00 25.00           C
ATOM     99  CA  ILE    99       5.993  42.465  -8.144  1.00 25.00           C
ATOM    100  CA  ARG   100       6.008  46.129  -9.261  1.00 25.00           C
ATOM    101  CA  HIS   101       7.844  47.125  -6.052  1.00 25.00           C
ATOM    102  CA  VAL   102      10.430  44.362  -6.643  1.00 25.00           C
ATOM    103  CA  CYS   103      10.934  45.572 -10.241  1.00 25.00           C
ATOM    104  CA  GLU   104      11.412  49.161  -8.995  1.00 25.00           C
ATOM    105  CA  HIS   105      13.980  47.952  -6.424  1.00 25.00           C
ATOM    106  CA  VAL   106      15.850  46.030  -9.158  1.00 25.00           C
ATOM    107  CA  GLU   107      15.871  49.153 -11.374  1.00 25.00           C
ATOM    108  CA  SER   108      15.052  51.254 -14.435  1.00 25.00           C
ATOM    109  CA  GLY   109      17.424  48.809 -16.128  1.00 25.00           C
ATOM    110  CA  ARG   110      18.313  45.707 -14.227  1.00 25.00           C
ATOM    111  CA  LEU   111      19.958  45.973 -10.828  1.00 25.00           C
ATOM    112  CA  ASP   112      22.211  47.295  -8.027  1.00 25.00           C
ATOM    113  CA  PHE   113      21.803  43.723  -6.731  1.00 25.00           C
ATOM    114  CA  THR   114      24.820  41.458  -6.074  1.00 25.00           C
ATOM    115  CA  GLU   115      23.686  39.095  -8.866  1.00 25.00           C
ATOM    116  CA  LEU   116      23.314  42.062 -11.259  1.00 25.00           C
ATOM    117  CA  GLU   117      26.828  43.276 -10.340  1.00 25.00           C
ATOM    118  CA  GLY   118      29.562  43.928  -7.692  1.00 25.00           C
ATOM    119  CA  ALA   119      27.260  45.753  -5.262  1.00 25.00           C
ATOM    120  CA  GLU   120      27.650  44.911  -1.572  1.00 25.00           C
ATOM    121  CA  ALA   121      26.539  45.877   1.913  1.00 25.00           C
ATOM    122  CA  THR   122      26.386  49.676   1.445  1.00 25.00           C
ATOM    123  CA  THR   123      25.730  49.212  -2.299  1.00 25.00           C
ATOM    124  CA  VAL   124      22.931  46.716  -1.525  1.00 25.00           C
ATOM    125  CA  ILE   125      21.380  49.186   0.957  1.00 25.00           C
ATOM    126  CA  GLU   126      21.538  51.965  -1.674  1.00 25.00           C
ATOM    127  CA  LYS   127      19.854  49.670  -4.235  1.00 25.00           C
ATOM    128  CA  LEU   128      17.101  48.828  -1.709  1.00 25.00           C
ATOM    129  CA  THR   129      16.561  52.556  -1.018  1.00 25.00           C
ATOM    130  CA  ALA   130      16.322  53.244  -4.779  1.00 25.00           C
ATOM    131  CA  ILE   131      12.638  52.824  -5.692  1.00 25.00           C
ATOM    132  CA  LYS   132      10.488  54.167  -8.509  1.00 25.00           C
ATOM    133  CA  GLY   133       7.431  52.272  -9.797  1.00 25.00           C
ATOM    134  CA  ILE   134       4.524  51.106  -7.557  1.00 25.00           C
ATOM    135  CA  GLY   135       7.233  52.292  -5.110  1.00 25.00           C
ATOM    136  CA  GLN   136       4.841  52.174  -2.142  1.00 25.00           C
ATOM    137  CA  TRP   137       4.150  49.613   0.620  1.00 25.00           C
ATOM    138  CA  THR   138       6.288  47.020  -1.216  1.00 25.00           C
ATOM    139  CA  ALA   139       9.129  49.566  -1.553  1.00 25.00           C
ATOM    140  CA  GLU   140       8.896  50.358   2.186  1.00 25.00           C
ATOM    141  CA  MET   141       9.028  46.620   3.011  1.00 25.00           C
ATOM    142  CA  PHE   142      12.108  46.209   0.772  1.00 25.00           C
ATOM    143  CA  MET   143      13.798  49.173   2.510  1.00 25.00           C
ATOM    144  CA  MET   144      13.025  47.638   5.932  1.00 25.00           C
ATOM    145  CA  PHE   145      14.495  44.291   4.792  1.00 25.00           C
ATOM    146  CA  SER   146      17.651  46.072   3.551  1.00 25.00           C
ATOM    147  CA  LEU   147      18.115  46.737   7.307  1.00 25.00           C
ATOM    148  CA  GLY   148      21.547  47.401   8.809  1.00 25.00           C
ATOM    149  CA  ARG   149      21.974  43.669   8.165  1.00 25.00           C
TER
END
