
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  116 (  116),  selected  116 , name T0323TS168_4-D2
# Molecule2: number of CA atoms  116 (  868),  selected  116 , name T0323_D2.pdb
# PARAMETERS: T0323TS168_4-D2.T0323_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    56        45 - 100         5.00     8.01
  LONGEST_CONTINUOUS_SEGMENT:    56        46 - 101         5.00     8.11
  LCS_AVERAGE:     40.56

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        83 - 107         1.95     9.78
  LONGEST_CONTINUOUS_SEGMENT:    25        84 - 108         1.96    10.09
  LCS_AVERAGE:     16.08

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        51 - 69          0.89     8.15
  LCS_AVERAGE:     10.26

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  116
LCS_GDT     P      34     P      34      3    5   39     3    3    4    5    5    8   23   37   43   56   60   65   68   70   84   89   95   97  100  102 
LCS_GDT     T      35     T      35      3   17   39     3    3    4    5    5    5   31   40   43   52   59   62   68   70   84   88   95   97   99  100 
LCS_GDT     K      36     K      36      3   17   39     3    3    4    5   17   34   38   42   46   54   60   63   68   86   87   89   95   97  100  102 
LCS_GDT     P      37     P      37     14   17   39     3   11   20   31   33   37   38   42   46   54   72   81   85   87   89   92   96   99  100  102 
LCS_GDT     N      38     N      38     14   17   39     2   11   22   31   33   37   38   45   52   63   75   82   85   87   90   92   96   99  100  102 
LCS_GDT     P      39     P      39     14   17   39    11   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     F      40     F      40     14   17   39    11   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     Q      41     Q      41     14   17   39    11   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     S      42     S      42     14   17   39    11   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     L      43     L      43     14   17   39    11   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     V      44     V      44     14   17   39    11   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     S      45     S      45     14   17   56    11   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     S      46     S      46     14   18   56    11   13   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     I      47     I      47     14   23   56    11   12   25   30   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     V      48     V      48     14   23   56    11   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     E      49     E      49     14   23   56    11   12   26   31   33   37   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     Q      50     Q      50     14   23   56     9   12   15   24   32   37   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     Q      51     Q      51     19   23   56     3   16   19   23   29   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     L      52     L      52     19   23   56     3    5   19   27   29   32   41   48   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     S      53     S      53     19   23   56     3   14   19   27   29   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     I      54     I      54     19   23   56     6   16   19   27   29   32   41   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     K      55     K      55     19   23   56    11   16   19   27   29   32   41   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     A      56     A      56     19   23   56     7   16   19   27   29   32   45   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     A      57     A      57     19   23   56    12   16   19   27   29   32   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     S      58     S      58     19   23   56    12   16   19   27   29   32   45   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     A      59     A      59     19   23   56    12   16   19   27   29   32   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     I      60     I      60     19   23   56    12   16   19   27   29   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     Y      61     Y      61     19   23   56    12   16   19   27   29   32   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     G      62     G      62     19   23   56    12   16   19   27   29   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     R      63     R      63     19   23   56    12   16   19   27   29   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     V      64     V      64     19   23   56    12   16   19   27   29   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     E      65     E      65     19   23   56    12   16   19   27   29   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     Q      66     Q      66     19   23   56    12   16   19   27   29   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     L      67     L      67     19   23   56    12   16   19   27   29   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     V      68     V      68     19   23   56    12   16   19   27   29   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     G      69     G      69     19   23   56     3   12   17   20   26   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     G      70     G      70      4    5   56     3    3    5    6    6    7   11   16   34   46   55   63   68   73   81   88   94   99  100  102 
LCS_GDT     A      71     A      71      4   10   56     3    3    5    6    8    9   12   16   24   28   36   43   49   56   68   75   79   85   93   98 
LCS_GDT     L      72     L      72      8   10   56     3    5    8    9    9   12   12   15   20   26   33   39   45   52   60   67   74   82   93   98 
LCS_GDT     E      73     E      73      8   10   56     3    6    8    9   10   12   12   14   16   21   28   32   41   46   51   60   64   68   73   81 
LCS_GDT     K      74     K      74      8   10   56     3    6    8    9   10   12   12   15   19   26   32   39   44   58   65   78   83   88   93   98 
LCS_GDT     P      75     P      75      8   10   56     3    6    8    9   10   12   14   18   24   31   48   59   67   77   88   92   96   99  100  102 
LCS_GDT     E      76     E      76      8   10   56     4    6    8    9   10   16   25   34   44   53   61   71   79   84   90   92   96   99  100  102 
LCS_GDT     Q      77     Q      77      8   10   56     4    6    8   10   14   21   25   34   44   53   61   68   78   84   90   92   96   99  100  102 
LCS_GDT     L      78     L      78      8   10   56     4    6    8    9   16   28   36   47   55   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     Y      79     Y      79      8   10   56     4    8   13   23   29   34   41   48   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     R      80     R      80      8   13   56     3    6    8   12   19   23   33   40   49   57   67   75   83   87   90   92   96   99  100  102 
LCS_GDT     V      81     V      81      4   13   56     0    3    8   11   14   20   25   32   44   50   59   63   73   76   83   90   95   99  100  102 
LCS_GDT     S      82     S      82      9   13   56     0    3    7   11   18   28   36   47   53   65   76   82   84   87   90   92   96   99  100  102 
LCS_GDT     D      83     D      83      9   25   56     7    8    8   13   21   32   41   48   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     E      84     E      84      9   25   56     7    8   14   24   30   37   41   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     A      85     A      85      9   25   56     7   14   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     L      86     L      86      9   25   56    15   17   25   31   33   37   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     R      87     R      87      9   25   56     7   12   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     Q      88     Q      88      9   25   56     7    8    8   20   30   36   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     A      89     A      89      9   25   56     7    8    8   10   15   26   38   42   57   59   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     G      90     G      90      9   25   56     4    8   22   31   33   37   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     V      91     V      91      9   25   56     4    5    8   27   33   37   38   42   57   65   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     S      92     S      92     16   25   56     3    4   17   24   32   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     K      93     K      93     16   25   56    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     R      94     R      94     16   25   56    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     K      95     K      95     16   25   56    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     I      96     I      96     16   25   56    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     E      97     E      97     16   25   56    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     Y      98     Y      98     16   25   56    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     I      99     I      99     16   25   56    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     R     100     R     100     16   25   56    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     H     101     H     101     16   25   56    15   21   26   31   33   38   46   51   57   63   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     V     102     V     102     16   25   50    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     C     103     C     103     16   25   50    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     E     104     E     104     16   25   42    15   21   26   31   33   38   46   51   57   66   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     H     105     H     105     16   25   42    15   21   26   31   33   38   46   51   57   59   75   82   85   87   90   92   96   99  100  102 
LCS_GDT     V     106     V     106     16   25   42    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     E     107     E     107     16   25   42    15   21   26   31   33   38   46   51   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     S     108     S     108      4   25   42     3    4    5   17   29   34   38   42   46   54   60   63   72   86   87   89   95   97   99  101 
LCS_GDT     G     109     G     109      4   17   42     3    4    5    7   12   26   34   38   42   52   60   68   81   87   90   92   96   99  100  102 
LCS_GDT     R     110     R     110      4    7   42     3    4    5    7    8    9   13   13   21   24   31   34   44   54   78   88   89   97   99  102 
LCS_GDT     L     111     L     111      4    7   42     3    4    5    7    8    9   13   13   29   41   50   57   68   83   88   92   96   99  100  102 
LCS_GDT     D     112     D     112      4    7   39     3    4    5    9   14   17   22   34   43   53   61   71   81   84   90   92   96   99  100  102 
LCS_GDT     F     113     F     113      5    7   38     5    5    6    8    9   16   20   34   44   55   60   69   76   81   88   90   95   99  100  102 
LCS_GDT     T     114     T     114      5    7   37     5    5    6   12   16   18   20   24   26   29   36   52   59   68   74   79   86   90   93   97 
LCS_GDT     E     115     E     115      5    7   37     5    5    6    8   16   17   19   22   26   29   33   46   58   64   73   79   83   88   93   97 
LCS_GDT     L     116     L     116      5    7   37     5    5    6   10   16   18   20   24   26   40   48   60   65   74   79   83   90   94   97  100 
LCS_GDT     E     117     E     117      5    7   37     5    5    6    8    9   12   15   19   23   27   36   51   58   68   73   79   83   88   93   97 
LCS_GDT     G     118     G     118      3   14   37     3    3    8   12   16   18   20   24   26   29   33   46   58   68   73   79   84   88   93   97 
LCS_GDT     A     119     A     119     12   14   37     3    3   11   11   14   17   19   24   28   30   38   43   57   68   73   82   90   94   97  102 
LCS_GDT     E     120     E     120     12   14   37     1    3    5   10   14   17   19   23   26   29   33   38   47   52   68   82   89   94   97  102 
LCS_GDT     A     121     A     121     12   14   37     9   10   11   12   16   18   22   30   43   52   59   68   73   81   88   90   93   99  100  102 
LCS_GDT     T     122     T     122     12   14   37     9   10   11   12   16   18   23   34   44   53   60   68   76   83   88   92   96   99  100  102 
LCS_GDT     T     123     T     123     12   14   37     9   10   11   12   16   18   24   34   44   53   61   71   78   84   88   92   96   99  100  102 
LCS_GDT     V     124     V     124     12   14   37     9   10   11   12   16   19   28   34   46   56   63   73   81   84   89   92   96   99  100  102 
LCS_GDT     I     125     I     125     12   14   37     9   10   11   12   16   22   35   47   52   63   73   81   85   87   90   92   96   99  100  102 
LCS_GDT     E     126     E     126     12   14   37     9   10   11   12   21   28   36   47   53   64   76   81   85   87   90   92   96   99  100  102 
LCS_GDT     K     127     K     127     12   20   37     9   10   11   12   24   32   41   47   55   64   76   81   85   87   90   92   96   99  100  102 
LCS_GDT     L     128     L     128     12   20   37     9   16   19   27   29   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     T     129     T     129     12   20   37     9   10   11   16   25   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     A     130     A     130     12   20   37     9   10   19   27   29   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     I     131     I     131      4   20   37     2    6   16   27   29   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     K     132     K     132      4   20   37     3   16   19   24   29   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     G     133     G     133      4   20   37     3    5    9   16   19   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     I     134     I     134     13   20   37     3   10   12   16   26   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     G     135     G     135     13   20   37     3    6   12   14   19   26   36   47   55   66   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     Q     136     Q     136     13   20   37     9   10   19   27   29   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     W     137     W     137     13   20   37     9   10   18   27   29   32   38   46   53   64   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     T     138     T     138     13   20   37     9   10   12   27   29   32   41   47   55   64   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     A     139     A     139     13   20   37     9   10   19   27   29   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     E     140     E     140     13   20   37     9   10   18   27   29   32   41   47   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     M     141     M     141     13   20   37     9   10   12   16   18   32   37   44   52   59   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     F     142     F     142     13   20   37     9   10   12   27   29   32   41   48   55   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     M     143     M     143     13   20   37     9   10   12   16   29   32   39   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     M     144     M     144     13   20   37     9   10   12   16   18   28   33   39   52   57   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     F     145     F     145     13   20   37     3   10   12   16   18   24   37   40   52   64   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     S     146     S     146     13   20   37     3    9   19   27   29   32   41   48   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     L     147     L     147      4   20   37     3    4    4    7   17   25   38   45   57   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     G     148     G     148      4   16   34     3    4    4    5   13   19   32   43   56   67   76   82   85   87   90   92   96   99  100  102 
LCS_GDT     R     149     R     149      4    6   32     3    4    4    5   33   38   46   51   57   59   74   82   85   87   90   92   96   99  100  102 
LCS_AVERAGE  LCS_A:  22.30  (  10.26   16.08   40.56 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     21     26     31     33     38     46     51     57     67     76     82     85     87     90     92     96     99    100    102 
GDT PERCENT_CA  12.93  18.10  22.41  26.72  28.45  32.76  39.66  43.97  49.14  57.76  65.52  70.69  73.28  75.00  77.59  79.31  82.76  85.34  86.21  87.93
GDT RMS_LOCAL    0.23   0.64   0.83   1.22   1.30   2.06   2.44   2.62   2.94   3.79   4.04   4.23   4.38   4.47   4.78   4.95   5.18   5.41   5.43   5.57
GDT RMS_ALL_CA  10.65  10.00   9.83   9.90   9.82  10.14   9.90   9.68   9.38   8.07   7.98   8.06   7.94   7.86   7.53   7.33   7.29   7.15   7.29   7.20

#      Molecule1      Molecule2       DISTANCE
LGA    P      34      P      34          5.402
LGA    T      35      T      35          8.042
LGA    K      36      K      36          6.574
LGA    P      37      P      37          6.467
LGA    N      38      N      38          5.032
LGA    P      39      P      39          2.449
LGA    F      40      F      40          2.984
LGA    Q      41      Q      41          3.164
LGA    S      42      S      42          2.051
LGA    L      43      L      43          1.143
LGA    V      44      V      44          1.804
LGA    S      45      S      45          2.245
LGA    S      46      S      46          1.454
LGA    I      47      I      47          0.698
LGA    V      48      V      48          1.559
LGA    E      49      E      49          2.963
LGA    Q      50      Q      50          3.398
LGA    Q      51      Q      51          6.222
LGA    L      52      L      52          4.682
LGA    S      53      S      53          5.383
LGA    I      54      I      54          3.794
LGA    K      55      K      55          3.714
LGA    A      56      A      56          3.548
LGA    A      57      A      57          3.464
LGA    S      58      S      58          3.527
LGA    A      59      A      59          3.426
LGA    I      60      I      60          3.342
LGA    Y      61      Y      61          3.423
LGA    G      62      G      62          3.176
LGA    R      63      R      63          2.710
LGA    V      64      V      64          3.068
LGA    E      65      E      65          2.970
LGA    Q      66      Q      66          2.855
LGA    L      67      L      67          3.163
LGA    V      68      V      68          2.973
LGA    G      69      G      69          3.495
LGA    G      70      G      70          9.498
LGA    A      71      A      71         14.184
LGA    L      72      L      72         15.001
LGA    E      73      E      73         18.970
LGA    K      74      K      74         17.513
LGA    P      75      P      75         13.552
LGA    E      76      E      76         12.792
LGA    Q      77      Q      77         11.660
LGA    L      78      L      78          6.476
LGA    Y      79      Y      79          4.810
LGA    R      80      R      80          6.777
LGA    V      81      V      81          8.074
LGA    S      82      S      82          6.011
LGA    D      83      D      83          4.766
LGA    E      84      E      84          3.903
LGA    A      85      A      85          2.189
LGA    L      86      L      86          2.931
LGA    R      87      R      87          2.139
LGA    Q      88      Q      88          3.344
LGA    A      89      A      89          4.716
LGA    G      90      G      90          3.429
LGA    V      91      V      91          4.963
LGA    S      92      S      92          2.679
LGA    K      93      K      93          2.216
LGA    R      94      R      94          1.503
LGA    K      95      K      95          1.024
LGA    I      96      I      96          1.090
LGA    E      97      E      97          1.111
LGA    Y      98      Y      98          1.136
LGA    I      99      I      99          1.068
LGA    R     100      R     100          0.937
LGA    H     101      H     101          1.627
LGA    V     102      V     102          1.900
LGA    C     103      C     103          1.764
LGA    E     104      E     104          2.052
LGA    H     105      H     105          2.956
LGA    V     106      V     106          2.904
LGA    E     107      E     107          1.994
LGA    S     108      S     108          8.113
LGA    G     109      G     109          9.796
LGA    R     110      R     110         13.227
LGA    L     111      L     111         13.212
LGA    D     112      D     112         13.399
LGA    F     113      F     113         15.417
LGA    T     114      T     114         20.849
LGA    E     115      E     115         22.321
LGA    L     116      L     116         19.882
LGA    E     117      E     117         23.866
LGA    G     118      G     118         24.799
LGA    A     119      A     119         20.977
LGA    E     120      E     120         20.429
LGA    A     121      A     121         17.525
LGA    T     122      T     122         17.391
LGA    T     123      T     123         16.803
LGA    V     124      V     124         14.252
LGA    I     125      I     125         12.574
LGA    E     126      E     126         12.587
LGA    K     127      K     127         11.844
LGA    L     128      L     128          9.292
LGA    T     129      T     129          9.457
LGA    A     130      A     130          9.296
LGA    I     131      I     131          8.961
LGA    K     132      K     132          7.392
LGA    G     133      G     133          7.788
LGA    I     134      I     134          8.673
LGA    G     135      G     135         10.745
LGA    Q     136      Q     136         10.697
LGA    W     137      W     137         11.119
LGA    T     138      T     138         10.290
LGA    A     139      A     139          9.572
LGA    E     140      E     140         10.007
LGA    M     141      M     141         10.359
LGA    F     142      F     142          9.189
LGA    M     143      M     143          8.933
LGA    M     144      M     144          9.793
LGA    F     145      F     145          9.555
LGA    S     146      S     146          7.829
LGA    L     147      L     147          4.080
LGA    G     148      G     148          5.541
LGA    R     149      R     149          3.000

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  116  116    4.0     51    2.62    42.026    36.957     1.873

LGA_LOCAL      RMSD =  2.623  Number of atoms =   51  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  9.379  Number of atoms =  116 
Std_ALL_ATOMS  RMSD =  6.987  (standard rmsd on all 116 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.105278 * X  +   0.806596 * Y  +   0.581652 * Z  +  16.265049
  Y_new =  -0.085512 * X  +  -0.590079 * Y  +   0.802804 * Z  +  39.934700
  Z_new =   0.990759 * X  +   0.034779 * Y  +   0.131096 * Z  +  -8.411820 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.259320   -2.882273  [ DEG:    14.8579   -165.1421 ]
  Theta =  -1.434746   -1.706847  [ DEG:   -82.2049    -97.7951 ]
  Phi   =  -2.459424    0.682169  [ DEG:  -140.9146     39.0854 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0323TS168_4-D2                               
REMARK     2: T0323_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0323TS168_4-D2.T0323_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  116  116   4.0   51   2.62  36.957     6.99
REMARK  ---------------------------------------------------------- 
MOLECULE T0323TS168_4-D2
PFRMAT TS
TARGET T0323
MODEL 4
PARENT N/A
ATOM     34  CA  PRO    34      21.039  25.630   6.356  1.00 25.00           C
ATOM     35  CA  THR    35      17.306  26.156   5.842  1.00 25.00           C
ATOM     36  CA  LYS    36      17.336  27.945   2.540  1.00 25.00           C
ATOM     37  CA  PRO    37      16.446  29.820  -0.698  1.00 25.00           C
ATOM     38  CA  ASN    38      16.233  32.179  -3.708  1.00 25.00           C
ATOM     39  CA  PRO    39      16.355  35.297  -5.958  1.00 25.00           C
ATOM     40  CA  PHE    40      13.410  36.171  -8.247  1.00 25.00           C
ATOM     41  CA  GLN    41      11.150  33.773  -6.296  1.00 25.00           C
ATOM     42  CA  SER    42      12.260  35.371  -2.997  1.00 25.00           C
ATOM     43  CA  LEU    43      11.515  38.854  -4.405  1.00 25.00           C
ATOM     44  CA  VAL    44       8.045  37.685  -5.527  1.00 25.00           C
ATOM     45  CA  SER    45       7.375  36.247  -2.041  1.00 25.00           C
ATOM     46  CA  SER    46       8.459  39.555  -0.443  1.00 25.00           C
ATOM     47  CA  ILE    47       6.132  41.482  -2.796  1.00 25.00           C
ATOM     48  CA  VAL    48       3.237  39.144  -1.890  1.00 25.00           C
ATOM     49  CA  GLU    49       3.949  39.668   1.837  1.00 25.00           C
ATOM     50  CA  GLN    50       3.977  43.464   1.323  1.00 25.00           C
ATOM     51  CA  GLN    51       0.636  43.261  -0.537  1.00 25.00           C
ATOM     52  CA  LEU    52      -0.140  39.733   0.562  1.00 25.00           C
ATOM     53  CA  SER    53       1.380  36.239   1.177  1.00 25.00           C
ATOM     54  CA  ILE    54       4.075  33.518   1.400  1.00 25.00           C
ATOM     55  CA  LYS    55       2.330  30.314   0.236  1.00 25.00           C
ATOM     56  CA  ALA    56      -0.092  32.378  -1.895  1.00 25.00           C
ATOM     57  CA  ALA    57       2.851  34.277  -3.444  1.00 25.00           C
ATOM     58  CA  SER    58       4.608  30.966  -4.228  1.00 25.00           C
ATOM     59  CA  ALA    59       1.411  29.629  -5.859  1.00 25.00           C
ATOM     60  CA  ILE    60       1.121  32.816  -7.962  1.00 25.00           C
ATOM     61  CA  TYR    61       4.774  32.458  -9.054  1.00 25.00           C
ATOM     62  CA  GLY    62       4.152  28.806 -10.026  1.00 25.00           C
ATOM     63  CA  ARG    63       1.071  29.844 -12.049  1.00 25.00           C
ATOM     64  CA  VAL    64       3.120  32.547 -13.828  1.00 25.00           C
ATOM     65  CA  GLU    65       5.846  29.982 -14.639  1.00 25.00           C
ATOM     66  CA  GLN    66       3.207  27.582 -16.032  1.00 25.00           C
ATOM     67  CA  LEU    67       1.754  30.392 -18.190  1.00 25.00           C
ATOM     68  CA  VAL    68       5.254  31.228 -19.501  1.00 25.00           C
ATOM     69  CA  GLY    69       4.943  27.982 -21.347  1.00 25.00           C
ATOM     70  CA  GLY    70       1.931  26.931 -23.497  1.00 25.00           C
ATOM     71  CA  ALA    71      -0.783  24.881 -21.797  1.00 25.00           C
ATOM     72  CA  LEU    72      -2.416  28.058 -20.487  1.00 25.00           C
ATOM     73  CA  GLU    73      -2.397  29.913 -23.742  1.00 25.00           C
ATOM     74  CA  LYS    74      -0.722  32.985 -25.186  1.00 25.00           C
ATOM     75  CA  PRO    75       1.056  34.818 -22.331  1.00 25.00           C
ATOM     76  CA  GLU    76      -1.107  37.866 -23.163  1.00 25.00           C
ATOM     77  CA  GLN    77      -3.093  37.371 -19.925  1.00 25.00           C
ATOM     78  CA  LEU    78       0.170  37.141 -17.931  1.00 25.00           C
ATOM     79  CA  TYR    79       1.430  40.362 -19.575  1.00 25.00           C
ATOM     80  CA  ARG    80      -1.861  42.120 -18.711  1.00 25.00           C
ATOM     81  CA  VAL    81      -3.969  45.281 -18.295  1.00 25.00           C
ATOM     82  CA  SER    82      -7.205  43.193 -18.576  1.00 25.00           C
ATOM     83  CA  ASP    83      -7.091  42.566 -14.817  1.00 25.00           C
ATOM     84  CA  GLU    84      -8.233  39.086 -13.700  1.00 25.00           C
ATOM     85  CA  ALA    85      -4.588  38.024 -13.196  1.00 25.00           C
ATOM     86  CA  LEU    86      -3.929  41.179 -11.126  1.00 25.00           C
ATOM     87  CA  ARG    87      -7.021  40.450  -8.987  1.00 25.00           C
ATOM     88  CA  GLN    88      -5.824  36.854  -8.438  1.00 25.00           C
ATOM     89  CA  ALA    89      -2.564  38.261  -7.069  1.00 25.00           C
ATOM     90  CA  GLY    90      -4.520  38.967  -3.908  1.00 25.00           C
ATOM     91  CA  VAL    91      -3.869  42.694  -3.386  1.00 25.00           C
ATOM     92  CA  SER    92      -4.252  44.341  -6.777  1.00 25.00           C
ATOM     93  CA  LYS    93      -2.941  47.839  -5.977  1.00 25.00           C
ATOM     94  CA  ARG    94      -0.015  48.133  -3.523  1.00 25.00           C
ATOM     95  CA  LYS    95       0.942  44.485  -4.188  1.00 25.00           C
ATOM     96  CA  ILE    96       0.826  45.118  -7.964  1.00 25.00           C
ATOM     97  CA  GLU    97       3.051  48.206  -7.538  1.00 25.00           C
ATOM     98  CA  TYR    98       5.536  46.160  -5.462  1.00 25.00           C
ATOM     99  CA  ILE    99       5.590  43.443  -8.160  1.00 25.00           C
ATOM    100  CA  ARG   100       6.230  46.093 -10.850  1.00 25.00           C
ATOM    101  CA  HIS   101       9.095  47.550  -8.770  1.00 25.00           C
ATOM    102  CA  VAL   102      10.603  44.054  -8.354  1.00 25.00           C
ATOM    103  CA  CYS   103      10.355  43.471 -12.131  1.00 25.00           C
ATOM    104  CA  GLU   104      12.076  46.830 -12.787  1.00 25.00           C
ATOM    105  CA  HIS   105      14.868  45.906 -10.334  1.00 25.00           C
ATOM    106  CA  VAL   106      15.321  42.529 -12.081  1.00 25.00           C
ATOM    107  CA  GLU   107      15.514  44.285 -15.479  1.00 25.00           C
ATOM    108  CA  SER   108      18.216  41.611 -16.099  1.00 25.00           C
ATOM    109  CA  GLY   109      15.841  40.588 -18.937  1.00 25.00           C
ATOM    110  CA  ARG   110      12.915  40.099 -16.542  1.00 25.00           C
ATOM    111  CA  LEU   111       9.789  42.293 -16.967  1.00 25.00           C
ATOM    112  CA  ASP   112      11.992  44.545 -19.099  1.00 25.00           C
ATOM    113  CA  PHE   113      12.892  48.178 -18.381  1.00 25.00           C
ATOM    114  CA  THR   114      11.948  49.293 -21.921  1.00 25.00           C
ATOM    115  CA  GLU   115      10.725  52.658 -20.562  1.00 25.00           C
ATOM    116  CA  LEU   116      14.006  53.101 -18.636  1.00 25.00           C
ATOM    117  CA  GLU   117      16.003  52.308 -21.807  1.00 25.00           C
ATOM    118  CA  GLY   118      16.838  48.932 -23.275  1.00 25.00           C
ATOM    119  CA  ALA   119      17.753  47.975 -19.753  1.00 25.00           C
ATOM    120  CA  GLU   120      18.934  48.356 -16.172  1.00 25.00           C
ATOM    121  CA  ALA   121      20.931  49.844 -13.340  1.00 25.00           C
ATOM    122  CA  THR   122      20.774  53.657 -13.011  1.00 25.00           C
ATOM    123  CA  THR   123      17.652  53.745 -15.228  1.00 25.00           C
ATOM    124  CA  VAL   124      16.023  51.022 -13.083  1.00 25.00           C
ATOM    125  CA  ILE   125      16.841  53.000  -9.907  1.00 25.00           C
ATOM    126  CA  GLU   126      15.316  56.156 -11.451  1.00 25.00           C
ATOM    127  CA  LYS   127      12.158  54.202 -12.386  1.00 25.00           C
ATOM    128  CA  LEU   128      11.909  52.845  -8.814  1.00 25.00           C
ATOM    129  CA  THR   129      12.284  56.391  -7.415  1.00 25.00           C
ATOM    130  CA  ALA   130       9.532  57.637  -9.769  1.00 25.00           C
ATOM    131  CA  ILE   131       7.210  54.823 -10.979  1.00 25.00           C
ATOM    132  CA  LYS   132       5.084  51.657 -10.546  1.00 25.00           C
ATOM    133  CA  GLY   133       4.561  53.009  -7.029  1.00 25.00           C
ATOM    134  CA  ILE   134       8.276  53.248  -6.115  1.00 25.00           C
ATOM    135  CA  GLY   135       8.718  56.291  -3.866  1.00 25.00           C
ATOM    136  CA  GLN   136       8.592  55.551  -0.165  1.00 25.00           C
ATOM    137  CA  TRP   137       7.004  52.429   1.383  1.00 25.00           C
ATOM    138  CA  THR   138       7.217  50.620  -1.985  1.00 25.00           C
ATOM    139  CA  ALA   139      10.905  51.603  -2.307  1.00 25.00           C
ATOM    140  CA  GLU   140      11.586  50.302   1.230  1.00 25.00           C
ATOM    141  CA  MET   141       9.836  47.002   0.380  1.00 25.00           C
ATOM    142  CA  PHE   142      11.937  46.680  -2.806  1.00 25.00           C
ATOM    143  CA  MET   143      15.132  47.322  -0.793  1.00 25.00           C
ATOM    144  CA  MET   144      14.095  44.652   1.750  1.00 25.00           C
ATOM    145  CA  PHE   145      13.436  42.169  -1.090  1.00 25.00           C
ATOM    146  CA  SER   146      16.876  42.933  -2.590  1.00 25.00           C
ATOM    147  CA  LEU   147      18.673  39.666  -1.619  1.00 25.00           C
ATOM    148  CA  GLY   148      18.665  37.908   1.748  1.00 25.00           C
ATOM    149  CA  ARG   149      22.138  37.617   3.280  1.00 25.00           C
TER
END
