
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  116 (  116),  selected  116 , name T0323TS168_3-D2
# Molecule2: number of CA atoms  116 (  868),  selected  116 , name T0323_D2.pdb
# PARAMETERS: T0323TS168_3-D2.T0323_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    92        40 - 131         5.00     6.62
  LONGEST_CONTINUOUS_SEGMENT:    92        41 - 132         5.00     6.62
  LCS_AVERAGE:     75.36

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32        38 - 69          1.73     8.57
  LCS_AVERAGE:     18.82

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        51 - 69          0.80     7.12
  LCS_AVERAGE:     10.53

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  116
LCS_GDT     P      34     P      34      4    5   39     2    4    4    5   10   15   23   24   31   39   43   48   50   60   63   75   85   92   99  105 
LCS_GDT     T      35     T      35      4    5   39     0    4    4    5    5   15   23   24   31   39   43   48   55   60   70   81   95  102  104  108 
LCS_GDT     K      36     K      36      4    5   39     2    4    4    5    5   14   17   24   29   36   39   48   49   55   70   81   85   92   99  108 
LCS_GDT     P      37     P      37      4   31   67     2    4    4    8   14   23   30   38   47   57   65   72   83   90   94  100  104  105  107  108 
LCS_GDT     N      38     N      38      4   32   69     0    3    6   22   24   29   34   40   52   57   67   76   84   90   95  101  104  105  107  108 
LCS_GDT     P      39     P      39     12   32   90    11   15   23   28   30   31   34   43   53   66   74   82   89   94   96  101  104  105  107  108 
LCS_GDT     F      40     F      40     12   32   92    11   15   23   28   30   31   34   41   53   66   73   82   89   94   96  101  104  105  107  108 
LCS_GDT     Q      41     Q      41     12   32   92    11   15   23   28   30   31   36   48   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     S      42     S      42     12   32   92    11   15   23   28   30   31   36   48   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     L      43     L      43     12   32   92    11   15   23   28   30   31   36   45   54   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     V      44     V      44     12   32   92    11   15   23   28   30   31   36   48   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     S      45     S      45     12   32   92    11   15   23   28   30   31   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     S      46     S      46     12   32   92    11   15   23   28   30   31   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     I      47     I      47     12   32   92    11   14   23   28   30   31   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     V      48     V      48     12   32   92    11   15   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     E      49     E      49     12   32   92    11   15   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     Q      50     Q      50     12   32   92     9   14   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     Q      51     Q      51     19   32   92     3   10   18   24   29   32   38   49   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     L      52     L      52     19   32   92     3   16   23   28   30   32   40   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     S      53     S      53     19   32   92     5   16   23   28   30   32   40   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     I      54     I      54     19   32   92     5   16   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     K      55     K      55     19   32   92     9   16   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     A      56     A      56     19   32   92     9   16   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     A      57     A      57     19   32   92    12   16   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     S      58     S      58     19   32   92    12   16   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     A      59     A      59     19   32   92    12   16   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     I      60     I      60     19   32   92    12   16   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     Y      61     Y      61     19   32   92    12   16   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     G      62     G      62     19   32   92    12   16   23   28   30   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     R      63     R      63     19   32   92    12   16   22   28   30   32   41   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     V      64     V      64     19   32   92    12   16   20   28   30   32   40   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     E      65     E      65     19   32   92    12   16   20   28   30   32   40   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     Q      66     Q      66     19   32   92    12   16   19   28   30   32   40   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     L      67     L      67     19   32   92    12   16   19   25   30   32   39   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     V      68     V      68     19   32   92    12   16   19   25   30   32   39   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     G      69     G      69     19   32   92     3    4   18   28   30   31   33   44   52   60   73   80   89   94   96  101  104  105  107  108 
LCS_GDT     G      70     G      70      5   22   92     3    4    5    7    9   20   23   34   49   60   68   76   83   90   95   99  103  104  107  108 
LCS_GDT     A      71     A      71      5   11   92     3    4    7    9   11   13   14   21   29   32   37   51   56   73   83   87   92   98  101  104 
LCS_GDT     L      72     L      72      5   11   92     3    4    8    9   11   13   21   25   33   43   50   61   69   78   87   93   99  103  105  107 
LCS_GDT     E      73     E      73      6   11   92     3    4    8    9   12   13   18   20   22   30   36   46   56   65   77   84   89   93   98  102 
LCS_GDT     K      74     K      74      6   11   92     3    4    8    9   12   19   24   32   42   52   58   68   76   83   91   98  101  103  105  107 
LCS_GDT     P      75     P      75      7   11   92     3    6    8   11   17   23   28   39   57   62   72   81   91   94   96  101  104  105  107  108 
LCS_GDT     E      76     E      76      7   11   92     4    6    8   12   19   28   37   45   57   62   72   81   91   94   96  101  104  105  107  108 
LCS_GDT     Q      77     Q      77      7   11   92     4    6    8   10   17   28   37   44   57   62   72   81   91   94   96  101  104  105  107  108 
LCS_GDT     L      78     L      78      7   15   92     4    6    8   15   22   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     Y      79     Y      79      7   17   92     4    6   10   16   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     R      80     R      80      7   17   92     3    6    8   17   25   32   42   47   57   62   72   81   91   94   96  101  104  105  107  108 
LCS_GDT     V      81     V      81     10   17   92     3    5   10   18   23   32   42   46   54   62   71   80   91   94   96  101  104  105  107  108 
LCS_GDT     S      82     S      82     10   17   92     3    3   12   18   25   32   42   47   57   62   72   81   91   94   96  101  104  105  107  108 
LCS_GDT     D      83     D      83     10   17   92     6    7   14   18   25   32   42   49   57   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     E      84     E      84     10   17   92     6    7   10   18   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     A      85     A      85     10   17   92     6    7   12   18   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     L      86     L      86     10   17   92     6    7   12   18   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     R      87     R      87     10   17   92     6    7   12   18   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     Q      88     Q      88     10   17   92     6    7   12   18   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     A      89     A      89     10   17   92     4    7   10   16   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     G      90     G      90     10   17   92     5    6   12   18   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     V      91     V      91      6   17   92     3    5    8   16   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     S      92     S      92      6   18   92     3    6   12   18   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     K      93     K      93     17   20   92    15   15   16   18   23   30   42   46   57   62   72   82   91   94   96  101  104  105  107  108 
LCS_GDT     R      94     R      94     17   20   92    15   15   16   18   23   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     K      95     K      95     17   20   92    15   15   16   18   22   27   37   43   49   58   71   82   91   94   96  101  104  105  107  108 
LCS_GDT     I      96     I      96     17   20   92    15   15   16   18   22   27   37   43   48   56   63   77   82   90   96  101  104  105  107  108 
LCS_GDT     E      97     E      97     17   20   92    15   15   16   18   22   27   37   46   57   62   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     Y      98     Y      98     17   20   92    15   15   16   18   23   32   42   49   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     I      99     I      99     17   20   92    15   15   16   18   22   28   37   43   52   60   69   82   91   94   96  101  104  105  107  108 
LCS_GDT     R     100     R     100     17   20   92    15   15   16   18   22   27   37   43   49   55   63   73   81   90   96  101  104  105  107  108 
LCS_GDT     H     101     H     101     17   20   92    15   15   16   18   22   27   37   43   57   64   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     V     102     V     102     17   20   92    15   15   16   18   22   32   42   48   57   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     C     103     C     103     17   20   92    15   15   16   18   22   27   37   41   48   55   63   73   76   89   95  101  104  105  107  108 
LCS_GDT     E     104     E     104     17   20   92    15   15   16   18   22   27   37   43   49   55   63   73   76   83   95  101  104  105  107  108 
LCS_GDT     H     105     H     105     17   20   92    15   15   16   18   22   27   37   43   53   64   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     V     106     V     106     17   20   92    15   15   16   18   22   27   37   43   50   60   70   82   91   94   96  101  104  105  107  108 
LCS_GDT     E     107     E     107     17   20   92    15   15   16   18   22   27   37   41   48   54   63   73   76   81   91  101  104  105  107  108 
LCS_GDT     S     108     S     108     17   20   92     3    3   16   18   22   26   37   43   50   56   63   73   76   83   95  101  104  105  107  108 
LCS_GDT     G     109     G     109     17   20   92     3    5    9   17   19   27   37   44   53   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     R     110     R     110      3   20   92     3    4   14   18   24   26   34   43   50   56   65   74   83   91   96  101  104  105  107  108 
LCS_GDT     L     111     L     111      3   20   92     3    6   14   18   24   27   37   45   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     D     112     D     112      8   20   92     1    6   14   18   24   27   37   43   50   57   73   82   91   94   96  101  104  105  107  108 
LCS_GDT     F     113     F     113      8   12   92     5    7    9   11   19   27   38   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     T     114     T     114      8   12   92     5    9   19   24   27   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     E     115     E     115      8   12   92     5    7    9   18   22   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     L     116     L     116      8   12   92     5    7   11   16   24   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     E     117     E     117      8   12   92     5    9   18   24   27   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     G     118     G     118      8   12   92     3    7    9   24   27   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     A     119     A     119      8   18   92     3    7   11   18   25   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     E     120     E     120     13   22   92     3   10   13   15   20   26   32   45   57   62   72   81   91   94   96  101  104  105  107  108 
LCS_GDT     A     121     A     121     13   22   92     9   13   14   19   27   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     T     122     T     122     13   22   92     9   13   14   17   24   32   38   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     T     123     T     123     13   22   92     9   13   14   17   24   26   37   47   57   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     V     124     V     124     13   22   92     9   13   14   18   24   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     I     125     I     125     13   22   92     9   13   19   24   27   32   40   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     E     126     E     126     13   22   92     9   13   14   18   24   32   38   48   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     K     127     K     127     13   22   92     9   13   14   18   24   28   38   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     L     128     L     128     13   22   92     9   13   14   21   27   32   42   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     T     129     T     129     13   22   92     6   13   14   24   27   32   38   45   57   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     A     130     A     130     13   22   92     6   13   14   18   27   32   38   45   52   63   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     I     131     I     131     13   22   92     6   13   19   24   27   32   40   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     K     132     K     132     13   22   92     6   13   19   24   27   32   38   45   57   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     G     133     G     133      4   22   73     3    6   13   17   24   29   34   42   52   61   71   80   91   94   96  101  104  105  107  108 
LCS_GDT     I     134     I     134      4   22   73     3    4    7   12   20   26   32   41   52   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     G     135     G     135     13   22   73     4   11   13   19   27   32   38   45   52   61   73   81   91   94   96  101  104  105  107  108 
LCS_GDT     Q     136     Q     136     13   22   73     9   11   13   19   24   29   34   41   52   61   72   80   91   94   96  101  104  105  107  108 
LCS_GDT     W     137     W     137     13   22   73     9   11   13   13   24   29   34   40   48   57   65   73   83   88   95  101  104  105  107  108 
LCS_GDT     T     138     T     138     13   22   73     9   11   13   19   24   32   38   45   53   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     A     139     A     139     13   22   73     9   11   14   19   24   29   38   48   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     E     140     E     140     13   22   73     9   11   13   19   24   29   34   41   53   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     M     141     M     141     13   22   73     9   11   13   19   24   29   34   41   57   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     F     142     F     142     13   18   73     9   11   13   19   24   30   38   50   58   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     M     143     M     143     13   18   73     9   13   14   19   24   30   35   41   53   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     M     144     M     144     13   18   73     9   11   14   19   24   29   34   41   53   66   73   82   91   94   96  101  104  105  107  108 
LCS_GDT     F     145     F     145     13   18   73     4   11   13   18   24   30   35   48   57   66   74   82   91   94   96  101  104  105  107  108 
LCS_GDT     S     146     S     146     13   17   73     3    9   13   15   22   29   37   41   50   56   65   80   85   91   96  101  104  105  107  108 
LCS_GDT     L     147     L     147     13   17   73     3   11   13   13   17   21   28   37   47   49   56   64   70   83   88   94  101  105  107  108 
LCS_GDT     G     148     G     148      3   15   73     3    3   10   18   20   25   28   34   40   46   51   55   70   72   76   80   93   96  105  108 
LCS_GDT     R     149     R     149      3   15   73     3    3    4    7   13   20   27   37   47   49   56   59   64   83   88   94   99  105  107  108 
LCS_AVERAGE  LCS_A:  34.90  (  10.53   18.82   75.36 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     16     23     28     30     32     42     50     58     66     74     82     91     94     96    101    104    105    107    108 
GDT PERCENT_CA  12.93  13.79  19.83  24.14  25.86  27.59  36.21  43.10  50.00  56.90  63.79  70.69  78.45  81.03  82.76  87.07  89.66  90.52  92.24  93.10
GDT RMS_LOCAL    0.23   0.52   1.02   1.32   1.47   1.74   2.52   2.94   3.23   3.51   3.86   4.16   4.45   4.53   4.63   4.86   5.03   5.09   5.25   5.31
GDT RMS_ALL_CA  16.47   6.95   9.48   8.89   8.57   7.19   6.70   6.27   6.23   6.19   6.13   6.13   6.17   6.14   6.15   6.12   6.12   6.13   6.13   6.12

#      Molecule1      Molecule2       DISTANCE
LGA    P      34      P      34         13.874
LGA    T      35      T      35         11.911
LGA    K      36      K      36         12.826
LGA    P      37      P      37          9.821
LGA    N      38      N      38          8.898
LGA    P      39      P      39          6.359
LGA    F      40      F      40          6.365
LGA    Q      41      Q      41          4.783
LGA    S      42      S      42          4.698
LGA    L      43      L      43          5.489
LGA    V      44      V      44          4.605
LGA    S      45      S      45          3.270
LGA    S      46      S      46          3.806
LGA    I      47      I      47          3.675
LGA    V      48      V      48          2.352
LGA    E      49      E      49          1.681
LGA    Q      50      Q      50          1.912
LGA    Q      51      Q      51          4.033
LGA    L      52      L      52          2.518
LGA    S      53      S      53          3.267
LGA    I      54      I      54          2.095
LGA    K      55      K      55          2.489
LGA    A      56      A      56          3.221
LGA    A      57      A      57          2.112
LGA    S      58      S      58          2.020
LGA    A      59      A      59          3.038
LGA    I      60      I      60          3.237
LGA    Y      61      Y      61          2.923
LGA    G      62      G      62          2.994
LGA    R      63      R      63          3.278
LGA    V      64      V      64          3.428
LGA    E      65      E      65          3.299
LGA    Q      66      Q      66          3.605
LGA    L      67      L      67          3.891
LGA    V      68      V      68          3.745
LGA    G      69      G      69          5.672
LGA    G      70      G      70          7.610
LGA    A      71      A      71         12.349
LGA    L      72      L      72         10.112
LGA    E      73      E      73         13.475
LGA    K      74      K      74          9.443
LGA    P      75      P      75          5.674
LGA    E      76      E      76          6.423
LGA    Q      77      Q      77          6.982
LGA    L      78      L      78          2.182
LGA    Y      79      Y      79          3.687
LGA    R      80      R      80          6.475
LGA    V      81      V      81          6.911
LGA    S      82      S      82          5.834
LGA    D      83      D      83          4.391
LGA    E      84      E      84          2.131
LGA    A      85      A      85          2.992
LGA    L      86      L      86          3.947
LGA    R      87      R      87          2.305
LGA    Q      88      Q      88          1.501
LGA    A      89      A      89          3.576
LGA    G      90      G      90          2.164
LGA    V      91      V      91          3.683
LGA    S      92      S      92          3.316
LGA    K      93      K      93          6.498
LGA    R      94      R      94          3.960
LGA    K      95      K      95          6.497
LGA    I      96      I      96          8.065
LGA    E      97      E      97          6.075
LGA    Y      98      Y      98          4.196
LGA    I      99      I      99          6.956
LGA    R     100      R     100          8.263
LGA    H     101      H     101          5.894
LGA    V     102      V     102          4.947
LGA    C     103      C     103          8.617
LGA    E     104      E     104          9.156
LGA    H     105      H     105          6.144
LGA    V     106      V     106          6.715
LGA    E     107      E     107         10.158
LGA    S     108      S     108          9.817
LGA    G     109      G     109          5.499
LGA    R     110      R     110          7.811
LGA    L     111      L     111          4.999
LGA    D     112      D     112          6.749
LGA    F     113      F     113          3.950
LGA    T     114      T     114          0.953
LGA    E     115      E     115          2.864
LGA    L     116      L     116          3.183
LGA    E     117      E     117          1.021
LGA    G     118      G     118          1.551
LGA    A     119      A     119          2.532
LGA    E     120      E     120          6.142
LGA    A     121      A     121          2.273
LGA    T     122      T     122          3.957
LGA    T     123      T     123          4.844
LGA    V     124      V     124          2.998
LGA    I     125      I     125          2.648
LGA    E     126      E     126          4.510
LGA    K     127      K     127          3.898
LGA    L     128      L     128          2.044
LGA    T     129      T     129          4.810
LGA    A     130      A     130          5.552
LGA    I     131      I     131          2.871
LGA    K     132      K     132          5.227
LGA    G     133      G     133          6.761
LGA    I     134      I     134          6.172
LGA    G     135      G     135          6.308
LGA    Q     136      Q     136          7.667
LGA    W     137      W     137          8.298
LGA    T     138      T     138          5.219
LGA    A     139      A     139          4.400
LGA    E     140      E     140          6.986
LGA    M     141      M     141          5.561
LGA    F     142      F     142          3.867
LGA    M     143      M     143          7.070
LGA    M     144      M     144          8.129
LGA    F     145      F     145          5.570
LGA    S     146      S     146          8.864
LGA    L     147      L     147         11.717
LGA    G     148      G     148         13.870
LGA    R     149      R     149         12.921

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  116  116    4.0     50    2.94    42.026    36.864     1.645

LGA_LOCAL      RMSD =  2.940  Number of atoms =   50  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.187  Number of atoms =  116 
Std_ALL_ATOMS  RMSD =  6.085  (standard rmsd on all 116 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.014814 * X  +  -0.895106 * Y  +   0.445607 * Z  +   8.964050
  Y_new =  -0.125942 * X  +   0.440436 * Y  +   0.888906 * Z  +  40.233219
  Z_new =  -0.991927 * X  +  -0.069289 * Y  +  -0.106207 * Z  +   1.808204 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.563532    0.578061  [ DEG:  -146.8796     33.1204 ]
  Theta =   1.443644    1.697949  [ DEG:    82.7147     97.2853 ]
  Phi   =  -1.453706    1.687887  [ DEG:   -83.2912     96.7088 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0323TS168_3-D2                               
REMARK     2: T0323_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0323TS168_3-D2.T0323_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  116  116   4.0   50   2.94  36.864     6.08
REMARK  ---------------------------------------------------------- 
MOLECULE T0323TS168_3-D2
PFRMAT TS
TARGET T0323
MODEL 3
PARENT N/A
ATOM     34  CA  PRO    34      29.906  31.180  10.697  1.00 25.00           C
ATOM     35  CA  THR    35      29.310  30.509   6.999  1.00 25.00           C
ATOM     36  CA  LYS    36      28.399  31.947   3.596  1.00 25.00           C
ATOM     37  CA  PRO    37      25.545  32.151   1.163  1.00 25.00           C
ATOM     38  CA  ASN    38      22.697  33.402  -1.099  1.00 25.00           C
ATOM     39  CA  PRO    39      19.388  35.329  -1.153  1.00 25.00           C
ATOM     40  CA  PHE    40      17.511  37.763  -3.436  1.00 25.00           C
ATOM     41  CA  GLN    41      15.014  35.010  -4.360  1.00 25.00           C
ATOM     42  CA  SER    42      14.484  34.212  -0.652  1.00 25.00           C
ATOM     43  CA  LEU    43      13.892  37.923   0.087  1.00 25.00           C
ATOM     44  CA  VAL    44      11.354  38.113  -2.774  1.00 25.00           C
ATOM     45  CA  SER    45       9.554  35.017  -1.416  1.00 25.00           C
ATOM     46  CA  SER    46       9.443  36.584   2.077  1.00 25.00           C
ATOM     47  CA  ILE    47       8.008  39.816   0.609  1.00 25.00           C
ATOM     48  CA  VAL    48       5.344  37.808  -1.271  1.00 25.00           C
ATOM     49  CA  GLU    49       4.430  35.953   1.953  1.00 25.00           C
ATOM     50  CA  GLN    50       4.139  39.287   3.817  1.00 25.00           C
ATOM     51  CA  GLN    51       1.879  40.664   1.049  1.00 25.00           C
ATOM     52  CA  LEU    52      -0.339  37.571   1.608  1.00 25.00           C
ATOM     53  CA  SER    53      -1.154  34.035   2.652  1.00 25.00           C
ATOM     54  CA  ILE    54       1.860  31.666   2.197  1.00 25.00           C
ATOM     55  CA  LYS    55       0.048  29.053   0.062  1.00 25.00           C
ATOM     56  CA  ALA    56      -1.419  31.825  -2.133  1.00 25.00           C
ATOM     57  CA  ALA    57       2.062  33.365  -2.558  1.00 25.00           C
ATOM     58  CA  SER    58       3.481  29.946  -3.538  1.00 25.00           C
ATOM     59  CA  ALA    59       0.667  29.483  -6.095  1.00 25.00           C
ATOM     60  CA  ILE    60       1.385  32.952  -7.550  1.00 25.00           C
ATOM     61  CA  TYR    61       5.110  32.098  -7.810  1.00 25.00           C
ATOM     62  CA  GLY    62       4.259  28.814  -9.586  1.00 25.00           C
ATOM     63  CA  ARG    63       1.990  30.696 -12.032  1.00 25.00           C
ATOM     64  CA  VAL    64       4.790  33.216 -12.728  1.00 25.00           C
ATOM     65  CA  GLU    65       7.247  30.347 -13.364  1.00 25.00           C
ATOM     66  CA  GLN    66       4.754  28.712 -15.769  1.00 25.00           C
ATOM     67  CA  LEU    67       4.324  32.037 -17.620  1.00 25.00           C
ATOM     68  CA  VAL    68       8.126  32.406 -17.894  1.00 25.00           C
ATOM     69  CA  GLY    69      10.034  29.463 -19.449  1.00 25.00           C
ATOM     70  CA  GLY    70       8.408  29.289 -22.822  1.00 25.00           C
ATOM     71  CA  ALA    71       8.832  32.300 -25.178  1.00 25.00           C
ATOM     72  CA  LEU    72       7.989  35.068 -22.712  1.00 25.00           C
ATOM     73  CA  GLU    73       8.082  37.633 -25.520  1.00 25.00           C
ATOM     74  CA  LYS    74       9.953  40.354 -23.751  1.00 25.00           C
ATOM     75  CA  PRO    75       8.324  40.499 -20.337  1.00 25.00           C
ATOM     76  CA  GLU    76       5.838  42.943 -21.921  1.00 25.00           C
ATOM     77  CA  GLN    77       2.942  40.586 -21.072  1.00 25.00           C
ATOM     78  CA  LEU    78       4.176  40.333 -17.456  1.00 25.00           C
ATOM     79  CA  TYR    79       4.385  44.150 -17.234  1.00 25.00           C
ATOM     80  CA  ARG    80       0.820  44.449 -18.600  1.00 25.00           C
ATOM     81  CA  VAL    81      -0.625  44.798 -15.070  1.00 25.00           C
ATOM     82  CA  SER    82      -3.590  46.919 -16.214  1.00 25.00           C
ATOM     83  CA  ASP    83      -5.014  46.260 -12.687  1.00 25.00           C
ATOM     84  CA  GLU    84      -7.163  43.258 -13.705  1.00 25.00           C
ATOM     85  CA  ALA    85      -4.067  41.005 -13.690  1.00 25.00           C
ATOM     86  CA  LEU    86      -3.123  42.284 -10.206  1.00 25.00           C
ATOM     87  CA  ARG    87      -6.676  41.589  -8.960  1.00 25.00           C
ATOM     88  CA  GLN    88      -6.517  38.046 -10.406  1.00 25.00           C
ATOM     89  CA  ALA    89      -3.745  37.868  -7.794  1.00 25.00           C
ATOM     90  CA  GLY    90      -5.162  36.805  -4.426  1.00 25.00           C
ATOM     91  CA  VAL    91      -2.528  39.081  -2.945  1.00 25.00           C
ATOM     92  CA  SER    92      -5.202  41.739  -2.337  1.00 25.00           C
ATOM     93  CA  LYS    93      -5.633  45.204  -0.866  1.00 25.00           C
ATOM     94  CA  ARG    94      -3.785  48.192  -2.391  1.00 25.00           C
ATOM     95  CA  LYS    95      -0.845  47.624  -0.004  1.00 25.00           C
ATOM     96  CA  ILE    96      -0.746  43.918  -0.966  1.00 25.00           C
ATOM     97  CA  GLU    97      -0.753  44.857  -4.678  1.00 25.00           C
ATOM     98  CA  TYR    98       2.118  47.321  -4.085  1.00 25.00           C
ATOM     99  CA  ILE    99       4.095  44.611  -2.238  1.00 25.00           C
ATOM    100  CA  ARG   100       3.504  42.172  -5.132  1.00 25.00           C
ATOM    101  CA  HIS   101       4.701  44.814  -7.633  1.00 25.00           C
ATOM    102  CA  VAL   102       7.843  45.419  -5.530  1.00 25.00           C
ATOM    103  CA  CYS   103       8.523  41.652  -5.417  1.00 25.00           C
ATOM    104  CA  GLU   104       8.112  41.440  -9.219  1.00 25.00           C
ATOM    105  CA  HIS   105      10.543  44.365  -9.669  1.00 25.00           C
ATOM    106  CA  VAL   106      13.077  42.646  -7.371  1.00 25.00           C
ATOM    107  CA  GLU   107      12.734  39.401  -9.377  1.00 25.00           C
ATOM    108  CA  SER   108      15.018  41.040 -11.965  1.00 25.00           C
ATOM    109  CA  GLY   109      17.239  43.702 -13.643  1.00 25.00           C
ATOM    110  CA  ARG   110      20.130  42.643 -11.351  1.00 25.00           C
ATOM    111  CA  LEU   111      18.343  42.607  -7.982  1.00 25.00           C
ATOM    112  CA  ASP   112      20.483  39.524  -7.158  1.00 25.00           C
ATOM    113  CA  PHE   113      23.882  38.162  -8.189  1.00 25.00           C
ATOM    114  CA  THR   114      26.875  40.312  -9.229  1.00 25.00           C
ATOM    115  CA  GLU   115      25.201  43.413  -7.729  1.00 25.00           C
ATOM    116  CA  LEU   116      24.551  41.514  -4.467  1.00 25.00           C
ATOM    117  CA  GLU   117      28.214  40.402  -4.357  1.00 25.00           C
ATOM    118  CA  GLY   118      29.232  44.059  -4.010  1.00 25.00           C
ATOM    119  CA  ALA   119      27.509  44.924  -0.765  1.00 25.00           C
ATOM    120  CA  GLU   120      24.966  42.842   1.067  1.00 25.00           C
ATOM    121  CA  ALA   121      23.472  46.138   2.194  1.00 25.00           C
ATOM    122  CA  THR   122      24.147  49.102  -0.138  1.00 25.00           C
ATOM    123  CA  THR   123      23.531  46.873  -3.191  1.00 25.00           C
ATOM    124  CA  VAL   124      20.241  45.646  -1.661  1.00 25.00           C
ATOM    125  CA  ILE   125      19.169  49.263  -1.002  1.00 25.00           C
ATOM    126  CA  GLU   126      20.003  50.196  -4.621  1.00 25.00           C
ATOM    127  CA  LYS   127      17.955  47.216  -5.886  1.00 25.00           C
ATOM    128  CA  LEU   128      15.004  48.280  -3.689  1.00 25.00           C
ATOM    129  CA  THR   129      15.247  51.852  -5.048  1.00 25.00           C
ATOM    130  CA  ALA   130      15.284  50.510  -8.636  1.00 25.00           C
ATOM    131  CA  ILE   131      11.888  49.207  -7.641  1.00 25.00           C
ATOM    132  CA  LYS   132       9.247  51.703  -8.894  1.00 25.00           C
ATOM    133  CA  GLY   133       5.927  50.049  -7.907  1.00 25.00           C
ATOM    134  CA  ILE   134       6.517  49.981  -4.150  1.00 25.00           C
ATOM    135  CA  GLY   135      10.110  50.191  -2.833  1.00 25.00           C
ATOM    136  CA  GLN   136       8.649  50.647   0.657  1.00 25.00           C
ATOM    137  CA  TRP   137       7.260  47.191   1.546  1.00 25.00           C
ATOM    138  CA  THR   138       9.908  45.530  -0.668  1.00 25.00           C
ATOM    139  CA  ALA   139      12.654  47.588   1.032  1.00 25.00           C
ATOM    140  CA  GLU   140      11.330  46.559   4.474  1.00 25.00           C
ATOM    141  CA  MET   141      11.319  42.883   3.399  1.00 25.00           C
ATOM    142  CA  PHE   142      14.924  43.214   2.150  1.00 25.00           C
ATOM    143  CA  MET   143      15.959  44.800   5.479  1.00 25.00           C
ATOM    144  CA  MET   144      14.271  41.943   7.392  1.00 25.00           C
ATOM    145  CA  PHE   145      16.100  39.374   5.219  1.00 25.00           C
ATOM    146  CA  SER   146      19.429  41.148   5.880  1.00 25.00           C
ATOM    147  CA  LEU   147      20.439  44.220   7.829  1.00 25.00           C
ATOM    148  CA  GLY   148      23.201  46.561   9.146  1.00 25.00           C
ATOM    149  CA  ARG   149      22.085  46.022  12.736  1.00 25.00           C
TER
END
