
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  128 (  128),  selected  128 , name T0322TS393_3-D1
# Molecule2: number of CA atoms  128 (  980),  selected  128 , name T0322_D1.pdb
# PARAMETERS: T0322TS393_3-D1.T0322_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   127        17 - 143         4.64     5.17
  LCS_AVERAGE:     98.54

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        42 - 81          1.93     5.44
  LCS_AVERAGE:     19.88

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        60 - 80          0.93     5.85
  LCS_AVERAGE:      6.86

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  128
LCS_GDT     G      16     G      16      3    6   16     0    3    3    4    5    5    6   10   11   11   12   12   13   17   17   18   20   22   23   27 
LCS_GDT     F      17     F      17      4    6  127     3    3    4    6    7    8   10   10   11   12   13   13   16   19   22   23   49   49   58   71 
LCS_GDT     S      18     S      18      5    6  127     4    5    6    6    7    8   10   10   11   12   13   14   17   19   27   32   59   65   72   99 
LCS_GDT     Q      19     Q      19      5    6  127     4    5    6    6    7    8   10   10   11   12   13   14   19   25   45   52   59   89   94  113 
LCS_GDT     L      20     L      20      5    6  127     4    5    6    6    7    8   10   10   11   16   18   20   32   39   58   68   84  116  119  120 
LCS_GDT     N      21     N      21      5    6  127     4    5    6    6    7    8   10   10   16   17   22   42   47   88  101  112  118  119  121  122 
LCS_GDT     W      22     W      22      5    6  127     4    5    6    6    7    8   26   31   47   84   95  107  115  118  118  119  121  122  122  122 
LCS_GDT     S      23     S      23      4    9  127     3    6   23   49   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     R      24     R      24      8   13  127     5   11   30   43   64   78   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G      25     G      25      8   13  127     3    8   21   46   68   80   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     F      26     F      26      8   13  127     7    9   13   37   56   78   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G      27     G      27      8   13  127     7   10   32   50   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     R      28     R      28      8   13  127     7   13   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     Q      29     Q      29      8   13  127     7   13   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     I      30     I      30      8   13  127     7   15   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G      31     G      31      8   13  127     7   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     P      32     P      32      6   13  127     3    5    6    7    8   16   42   58   88  104  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L      33     L      33      6   13  127     4   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     F      34     F      34      6   13  127     3   14   29   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     E      35     E      35      6   13  127     3   11   22   48   70   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     H      36     H      36      6   13  127     4   12   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     R      37     R      37      5    9  127     4    4    5    7   11   25   55   69   79   93  111  115  118  119  120  120  121  122  122  122 
LCS_GDT     E      38     E      38      5    9  127     4    8   10   10   31   36   55   69   84  103  111  115  118  119  120  120  121  122  122  122 
LCS_GDT     G      39     G      39      5    9  127     4    6   22   49   67   83   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     P      40     P      40      4    8  127     3    4   15   16   24   55   77   88   96  105  112  116  118  119  120  120  121  122  122  122 
LCS_GDT     G      41     G      41      4    7  127     3    4    7    9   11   24   35   48   75   89  106  115  117  119  120  120  121  122  122  122 
LCS_GDT     Q      42     Q      42      4   40  127     3    3   12   22   31   62   77   89  101  110  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     A      43     A      43      5   40  127     3   14   29   49   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     R      44     R      44      5   40  127     4    8   25   50   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L      45     L      45      5   40  127     4    6   17   47   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     A      46     A      46      5   40  127     4   16   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     F      47     F      47      5   40  127     2    9   13   35   59   80   93  101  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     R      48     R      48      5   40  127     3    5   27   48   68   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     V      49     V      49      4   40  127     3   17   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     E      50     E      50      4   40  127     6   17   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     E      51     E      51      4   40  127     5   12   29   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     H      52     H      52      4   40  127     3    8   25   50   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     H      53     H      53      4   40  127     4   11   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     T      54     T      54      4   40  127     3   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     N      55     N      55      3   40  127     3   13   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G      56     G      56     16   40  127     3    7   25   40   59   80   93  100  108  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L      57     L      57     16   40  127     3   15   31   51   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G      58     G      58     16   40  127     4   15   28   48   70   84   93  102  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     N      59     N      59     19   40  127     3   17   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     C      60     C      60     21   40  127     3   17   31   50   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     H      61     H      61     21   40  127     7   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G      62     G      62     21   40  127    10   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G      63     G      63     21   40  127    10   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     M      64     M      64     21   40  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L      65     L      65     21   40  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     M      66     M      66     21   40  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     S      67     S      67     21   40  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     F      68     F      68     21   40  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     A      69     A      69     21   40  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     D      70     D      70     21   40  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     M      71     M      71     21   40  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     A      72     A      72     21   40  127     7   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     W      73     W      73     21   40  127     5   11   31   50   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G      74     G      74     21   40  127     5   11   31   50   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     R      75     R      75     21   40  127     7   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     I      76     I      76     21   40  127     5   17   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     I      77     I      77     21   40  127     5   13   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     S      78     S      78     21   40  127     9   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L      79     L      79     21   40  127     6   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     Q      80     Q      80     21   40  127     3   19   29   50   69   83   93  102  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     K      81     K      81      3   40  127     3    3   10   22   44   71   93  102  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     S      82     S      82      6   15  127     3    5    8   12   14   21   31   40   50   77  103  108  115  119  120  120  121  122  122  122 
LCS_GDT     Y      83     Y      83      6   23  127     3    7   12   26   41   65   84  102  108  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     S      84     S      84      6   30  127     3    6   15   29   59   83   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     W      85     W      85      9   30  127     4   18   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     V      86     V      86      9   30  127     4   17   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     T      87     T      87      9   30  127     4    8   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     V      88     V      88      9   30  127     4   12   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     R      89     R      89      9   30  127     5   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L      90     L      90      9   30  127     5   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     M      91     M      91      9   30  127     4   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     C      92     C      92      9   30  127     3   12   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     D      93     D      93      9   30  127     3   13   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     F      94     F      94      4   30  127     3    4   28   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L      95     L      95      9   30  127     4   10   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     S      96     S      96      9   30  127     4   10   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G      97     G      97      9   30  127     4   12   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     A      98     A      98      9   30  127     4    8   25   48   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     K      99     K      99      9   30  127     3    8   28   46   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L     100     L     100      9   30  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G     101     G     101      9   30  127     3   12   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     D     102     D     102      9   30  127     3   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     W     103     W     103      9   30  127     3   14   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     V     104     V     104      5   30  127     4   10   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     E     105     E     105      5   30  127     4    6   27   50   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G     106     G     106      5   30  127     4   12   27   50   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     E     107     E     107      5   30  127     4   14   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G     108     G     108      7   30  127     4   11   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     E     109     E     109      7   30  127     3    7   25   48   70   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L     110     L     110      7   30  127     3   15   27   49   70   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     I     111     I     111      7   30  127     4   10   25   51   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     S     112     S     112      7   30  127     4   11   29   51   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     E     113     E     113      7   30  127     4   11   29   49   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     E     114     E     114      7   30  127     4   11   24   41   62   80   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     D     115     D     115      4   21  127     3    4    9   23   35   66   88  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     M     116     M     116      4   21  127     3    4    8   22   35   64   88  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L     117     L     117      4   21  127     3    5    9   19   42   77   89  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     F     118     F     118      4   21  127     3    4    9   20   42   71   89  102  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     T     119     T     119      4   12  127     3    5   10   23   59   78   92  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     V     120     V     120      4   12  127     3    3    7   27   60   79   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     R     121     R     121      4   12  127     3    4    9   22   45   71   91  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G     122     G     122      4   12  127     0    4    9   17   47   75   92  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     R     123     R     123      4   15  127     3    5   17   25   35   51   86  100  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     I     124     I     124      5   15  127     3    5   14   33   65   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     W     125     W     125      5   15  127     3   10   26   49   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     A     126     A     126      5   15  127     3    7   26   49   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G     127     G     127      5   15  127     3    5   18   39   66   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     E     128     E     128      5   15  127     3   11   29   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     R     129     R     129      5   15  127     3   16   29   43   60   80   92  102  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     T     130     T     130      5   15  127     5   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L     131     L     131      5   15  127    10   19   31   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     I     132     I     132      5   15  127     3   13   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     T     133     T     133      5   15  127     3   13   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G     134     G     134      7   15  127     3    7   16   25   35   69   89  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     T     135     T     135      7   15  127     3    7   17   32   65   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     G     136     G     136      7   15  127     3   11   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     V     137     V     137      7   15  127     3    6   13   32   66   81   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     F     138     F     138      7   13  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     K     139     K     139      7   13  127    10   19   32   52   71   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     A     140     A     140      7   13  127     3    7   24   45   67   84   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     L     141     L     141      5   13  127     3    7   17   36   54   73   93  103  110  112  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     S     142     S     142      3   10  127     3    4   13   27   36   53   75   89  106  110  114  116  118  119  120  120  121  122  122  122 
LCS_GDT     A     143     A     143      3    8  127     3    3    4    5    8    9   11   13   14   55   64   67  108  114  117  119  121  122  122  122 
LCS_AVERAGE  LCS_A:  41.76  (   6.86   19.88   98.54 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     19     32     52     71     84     93    103    110    112    114    116    118    119    120    120    121    122    122    122 
GDT PERCENT_CA   7.81  14.84  25.00  40.62  55.47  65.62  72.66  80.47  85.94  87.50  89.06  90.62  92.19  92.97  93.75  93.75  94.53  95.31  95.31  95.31
GDT RMS_LOCAL    0.16   0.61   1.10   1.45   1.73   1.95   2.17   2.48   2.62   2.68   2.78   2.89   3.03   3.10   3.19   3.19   3.27   3.40   3.40   3.40
GDT RMS_ALL_CA   5.58   5.44   5.84   5.56   5.51   5.43   5.49   5.44   5.41   5.39   5.38   5.35   5.41   5.40   5.39   5.39   5.37   5.35   5.35   5.35

#      Molecule1      Molecule2       DISTANCE
LGA    G      16      G      16         28.624
LGA    F      17      F      17         22.330
LGA    S      18      S      18         19.077
LGA    Q      19      Q      19         15.774
LGA    L      20      L      20         13.758
LGA    N      21      N      21         12.249
LGA    W      22      W      22          8.653
LGA    S      23      S      23          2.172
LGA    R      24      R      24          3.896
LGA    G      25      G      25          3.718
LGA    F      26      F      26          3.373
LGA    G      27      G      27          1.997
LGA    R      28      R      28          2.002
LGA    Q      29      Q      29          1.061
LGA    I      30      I      30          1.020
LGA    G      31      G      31          1.840
LGA    P      32      P      32          6.570
LGA    L      33      L      33          1.648
LGA    F      34      F      34          2.969
LGA    E      35      E      35          2.756
LGA    H      36      H      36          1.800
LGA    R      37      R      37          7.603
LGA    E      38      E      38          7.469
LGA    G      39      G      39          3.761
LGA    P      40      P      40          7.890
LGA    G      41      G      41          9.078
LGA    Q      42      Q      42          6.460
LGA    A      43      A      43          3.464
LGA    R      44      R      44          3.465
LGA    L      45      L      45          3.437
LGA    A      46      A      46          2.177
LGA    F      47      F      47          4.330
LGA    R      48      R      48          3.346
LGA    V      49      V      49          2.557
LGA    E      50      E      50          2.835
LGA    E      51      E      51          1.221
LGA    H      52      H      52          3.328
LGA    H      53      H      53          1.558
LGA    T      54      T      54          2.284
LGA    N      55      N      55          1.189
LGA    G      56      G      56          5.634
LGA    L      57      L      57          3.461
LGA    G      58      G      58          4.312
LGA    N      59      N      59          3.269
LGA    C      60      C      60          3.530
LGA    H      61      H      61          2.502
LGA    G      62      G      62          2.322
LGA    G      63      G      63          1.818
LGA    M      64      M      64          1.486
LGA    L      65      L      65          1.634
LGA    M      66      M      66          1.357
LGA    S      67      S      67          0.937
LGA    F      68      F      68          1.144
LGA    A      69      A      69          1.541
LGA    D      70      D      70          1.224
LGA    M      71      M      71          1.434
LGA    A      72      A      72          2.622
LGA    W      73      W      73          3.779
LGA    G      74      G      74          3.603
LGA    R      75      R      75          3.042
LGA    I      76      I      76          2.729
LGA    I      77      I      77          2.887
LGA    S      78      S      78          3.281
LGA    L      79      L      79          3.525
LGA    Q      80      Q      80          4.764
LGA    K      81      K      81          4.404
LGA    S      82      S      82          9.310
LGA    Y      83      Y      83          5.157
LGA    S      84      S      84          3.206
LGA    W      85      W      85          2.193
LGA    V      86      V      86          2.397
LGA    T      87      T      87          2.887
LGA    V      88      V      88          2.481
LGA    R      89      R      89          2.784
LGA    L      90      L      90          2.158
LGA    M      91      M      91          2.316
LGA    C      92      C      92          2.951
LGA    D      93      D      93          2.367
LGA    F      94      F      94          3.246
LGA    L      95      L      95          1.861
LGA    S      96      S      96          1.828
LGA    G      97      G      97          1.796
LGA    A      98      A      98          2.896
LGA    K      99      K      99          3.116
LGA    L     100      L     100          2.457
LGA    G     101      G     101          2.213
LGA    D     102      D     102          1.501
LGA    W     103      W     103          1.952
LGA    V     104      V     104          1.693
LGA    E     105      E     105          2.079
LGA    G     106      G     106          1.858
LGA    E     107      E     107          1.067
LGA    G     108      G     108          2.145
LGA    E     109      E     109          2.850
LGA    L     110      L     110          2.400
LGA    I     111      I     111          2.222
LGA    S     112      S     112          1.224
LGA    E     113      E     113          1.293
LGA    E     114      E     114          2.748
LGA    D     115      D     115          3.980
LGA    M     116      M     116          3.898
LGA    L     117      L     117          3.843
LGA    F     118      F     118          4.186
LGA    T     119      T     119          3.216
LGA    V     120      V     120          2.567
LGA    R     121      R     121          3.672
LGA    G     122      G     122          3.463
LGA    R     123      R     123          4.338
LGA    I     124      I     124          2.317
LGA    W     125      W     125          1.085
LGA    A     126      A     126          1.447
LGA    G     127      G     127          2.355
LGA    E     128      E     128          0.549
LGA    R     129      R     129          4.602
LGA    T     130      T     130          2.002
LGA    L     131      L     131          2.481
LGA    I     132      I     132          1.226
LGA    T     133      T     133          2.112
LGA    G     134      G     134          3.827
LGA    T     135      T     135          2.645
LGA    G     136      G     136          1.165
LGA    V     137      V     137          3.621
LGA    F     138      F     138          0.979
LGA    K     139      K     139          1.271
LGA    A     140      A     140          2.416
LGA    L     141      L     141          3.934
LGA    S     142      S     142          6.832
LGA    A     143      A     143         12.089

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  128  128    4.0    103    2.48    57.422    53.068     3.985

LGA_LOCAL      RMSD =  2.485  Number of atoms =  103  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.478  Number of atoms =  128 
Std_ALL_ATOMS  RMSD =  5.153  (standard rmsd on all 128 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.954416 * X  +  -0.122603 * Y  +   0.272139 * Z  +  10.379944
  Y_new =  -0.245944 * X  +  -0.839634 * Y  +   0.484279 * Z  +  -4.941652
  Z_new =   0.169123 * X  +  -0.529134 * Y  +  -0.831513 * Z  + -14.586183 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.574873    0.566720  [ DEG:  -147.5293     32.4707 ]
  Theta =  -0.169940   -2.971653  [ DEG:    -9.7368   -170.2632 ]
  Phi   =  -0.252204    2.889389  [ DEG:   -14.4502    165.5498 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0322TS393_3-D1                               
REMARK     2: T0322_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0322TS393_3-D1.T0322_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  128  128   4.0  103   2.48  53.068     5.15
REMARK  ---------------------------------------------------------- 
MOLECULE T0322TS393_3-D1
PFRMAT TS
TARGET T0322
MODEL 3
PARENT N/A
ATOM     16  CA  GLY    16      20.747  -3.823  10.389  1.00 25.00           C
ATOM     17  CA  PHE    17      19.164  -6.161   7.893  1.00 25.00           C
ATOM     18  CA  SER    18      16.077  -6.628  10.036  1.00 25.00           C
ATOM     19  CA  GLN    19      12.427  -5.912   9.386  1.00 25.00           C
ATOM     20  CA  LEU    20      12.147  -3.316   6.573  1.00 25.00           C
ATOM     21  CA  ASN    21       9.871  -0.236   7.050  1.00 25.00           C
ATOM     22  CA  TRP    22       9.467   1.602   3.699  1.00 25.00           C
ATOM     23  CA  SER    23      11.802  -1.001   2.127  1.00 25.00           C
ATOM     24  CA  ARG    24      10.395  -2.045  -1.225  1.00 25.00           C
ATOM     25  CA  GLY    25       8.206   0.982  -1.973  1.00 25.00           C
ATOM     26  CA  PHE    26       8.377   0.101  -5.694  1.00 25.00           C
ATOM     27  CA  GLY    27       8.164  -3.562  -6.794  1.00 25.00           C
ATOM     28  CA  ARG    28       6.135  -4.411  -3.658  1.00 25.00           C
ATOM     29  CA  GLN    29       3.765  -1.489  -4.371  1.00 25.00           C
ATOM     30  CA  ILE    30       2.396  -2.673  -7.712  1.00 25.00           C
ATOM     31  CA  GLY    31       3.131  -6.421  -7.318  1.00 25.00           C
ATOM     32  CA  PRO    32       5.035  -6.535 -10.625  1.00 25.00           C
ATOM     33  CA  LEU    33       7.064  -9.428  -9.226  1.00 25.00           C
ATOM     34  CA  PHE    34       9.796 -11.431 -10.849  1.00 25.00           C
ATOM     35  CA  GLU    35       9.682 -15.185 -11.137  1.00 25.00           C
ATOM     36  CA  HIS    36      12.128 -15.965 -13.946  1.00 25.00           C
ATOM     37  CA  ARG    37      12.596 -15.887 -17.722  1.00 25.00           C
ATOM     38  CA  GLU    38      14.831 -18.245 -19.607  1.00 25.00           C
ATOM     39  CA  GLY    39      18.470 -17.230 -18.885  1.00 25.00           C
ATOM     40  CA  PRO    40      21.169 -15.091 -20.561  1.00 25.00           C
ATOM     41  CA  GLY    41      18.771 -12.092 -20.789  1.00 25.00           C
ATOM     42  CA  GLN    42      15.534 -10.515 -19.651  1.00 25.00           C
ATOM     43  CA  ALA    43      14.166 -10.982 -16.072  1.00 25.00           C
ATOM     44  CA  ARG    44      10.337 -10.881 -16.284  1.00 25.00           C
ATOM     45  CA  LEU    45       7.355  -9.253 -14.704  1.00 25.00           C
ATOM     46  CA  ALA    46       4.941 -11.490 -12.712  1.00 25.00           C
ATOM     47  CA  PHE    47       1.518  -9.844 -12.901  1.00 25.00           C
ATOM     48  CA  ARG    48       0.348 -11.022  -9.478  1.00 25.00           C
ATOM     49  CA  VAL    49      -3.255 -10.639 -10.431  1.00 25.00           C
ATOM     50  CA  GLU    50      -5.325 -10.124  -7.304  1.00 25.00           C
ATOM     51  CA  GLU    51      -5.747  -8.336  -3.941  1.00 25.00           C
ATOM     52  CA  HIS    52      -8.018  -5.667  -5.487  1.00 25.00           C
ATOM     53  CA  HIS    53      -5.391  -4.957  -8.181  1.00 25.00           C
ATOM     54  CA  THR    54      -7.485  -6.825 -10.774  1.00 25.00           C
ATOM     55  CA  ASN    55     -11.131  -5.739 -10.105  1.00 25.00           C
ATOM     56  CA  GLY    56     -13.957  -3.668 -11.604  1.00 25.00           C
ATOM     57  CA  LEU    57     -15.972  -6.848 -11.043  1.00 25.00           C
ATOM     58  CA  GLY    58     -13.621  -9.679 -11.919  1.00 25.00           C
ATOM     59  CA  ASN    59     -10.796  -8.941 -14.379  1.00 25.00           C
ATOM     60  CA  CYS    60      -7.197  -8.873 -15.564  1.00 25.00           C
ATOM     61  CA  HIS    61      -7.566  -5.070 -15.665  1.00 25.00           C
ATOM     62  CA  GLY    62      -5.392  -5.231 -18.840  1.00 25.00           C
ATOM     63  CA  GLY    63      -3.845  -2.109 -17.250  1.00 25.00           C
ATOM     64  CA  MET    64      -1.966  -4.293 -14.728  1.00 25.00           C
ATOM     65  CA  LEU    65      -0.668  -6.504 -17.573  1.00 25.00           C
ATOM     66  CA  MET    66       0.499  -3.399 -19.486  1.00 25.00           C
ATOM     67  CA  SER    67       2.293  -2.114 -16.356  1.00 25.00           C
ATOM     68  CA  PHE    68       3.999  -5.513 -15.909  1.00 25.00           C
ATOM     69  CA  ALA    69       5.110  -5.466 -19.573  1.00 25.00           C
ATOM     70  CA  ASP    70       6.515  -1.931 -19.127  1.00 25.00           C
ATOM     71  CA  MET    71       8.413  -3.053 -15.997  1.00 25.00           C
ATOM     72  CA  ALA    72       9.847  -6.046 -17.909  1.00 25.00           C
ATOM     73  CA  TRP    73      10.948  -3.732 -20.755  1.00 25.00           C
ATOM     74  CA  GLY    74      12.629  -1.391 -18.234  1.00 25.00           C
ATOM     75  CA  ARG    75      14.441  -4.366 -16.643  1.00 25.00           C
ATOM     76  CA  ILE    76      15.627  -5.521 -20.096  1.00 25.00           C
ATOM     77  CA  ILE    77      16.901  -1.992 -20.866  1.00 25.00           C
ATOM     78  CA  SER    78      18.769  -1.910 -17.525  1.00 25.00           C
ATOM     79  CA  LEU    79      20.344  -5.315 -18.294  1.00 25.00           C
ATOM     80  CA  GLN    80      23.347  -3.926 -20.242  1.00 25.00           C
ATOM     81  CA  LYS    81      25.570  -2.797 -23.128  1.00 25.00           C
ATOM     82  CA  SER    82      25.072   0.826 -24.306  1.00 25.00           C
ATOM     83  CA  TYR    83      22.923   2.797 -21.865  1.00 25.00           C
ATOM     84  CA  SER    84      20.528   3.348 -18.952  1.00 25.00           C
ATOM     85  CA  TRP    85      16.869   4.109 -18.409  1.00 25.00           C
ATOM     86  CA  VAL    86      13.456   5.691 -18.335  1.00 25.00           C
ATOM     87  CA  THR    87      10.104   4.233 -19.336  1.00 25.00           C
ATOM     88  CA  VAL    88       9.040   5.382 -22.767  1.00 25.00           C
ATOM     89  CA  ARG    89       6.000   5.152 -25.107  1.00 25.00           C
ATOM     90  CA  LEU    90       4.177   1.952 -24.025  1.00 25.00           C
ATOM     91  CA  MET    91       2.123   0.431 -26.843  1.00 25.00           C
ATOM     92  CA  CYS    92      -1.047  -1.620 -26.188  1.00 25.00           C
ATOM     93  CA  ASP    93      -3.941  -4.092 -26.376  1.00 25.00           C
ATOM     94  CA  PHE    94      -5.777  -7.313 -27.091  1.00 25.00           C
ATOM     95  CA  LEU    95      -7.874  -9.857 -25.094  1.00 25.00           C
ATOM     96  CA  SER    96      -9.245 -12.841 -23.189  1.00 25.00           C
ATOM     97  CA  GLY    97      -9.451 -12.565 -19.396  1.00 25.00           C
ATOM     98  CA  ALA    98      -7.914 -14.974 -16.810  1.00 25.00           C
ATOM     99  CA  LYS    99      -8.722 -16.351 -13.349  1.00 25.00           C
ATOM    100  CA  LEU   100      -8.318 -14.541 -10.049  1.00 25.00           C
ATOM    101  CA  GLY   101      -6.083 -17.298  -8.718  1.00 25.00           C
ATOM    102  CA  ASP   102      -3.847 -17.803 -11.737  1.00 25.00           C
ATOM    103  CA  TRP   103      -0.885 -15.452 -11.666  1.00 25.00           C
ATOM    104  CA  VAL   104       1.975 -15.515 -14.187  1.00 25.00           C
ATOM    105  CA  GLU   105       4.559 -16.553 -16.738  1.00 25.00           C
ATOM    106  CA  GLY   106       6.613 -13.750 -18.399  1.00 25.00           C
ATOM    107  CA  GLU   107       8.691 -13.081 -21.498  1.00 25.00           C
ATOM    108  CA  GLY   108      10.531  -9.734 -21.915  1.00 25.00           C
ATOM    109  CA  GLU   109      12.936 -11.917 -23.971  1.00 25.00           C
ATOM    110  CA  LEU   110      15.602 -10.040 -25.866  1.00 25.00           C
ATOM    111  CA  ILE   111      14.620  -8.836 -29.369  1.00 25.00           C
ATOM    112  CA  SER   112      16.385  -6.110 -31.284  1.00 25.00           C
ATOM    113  CA  GLU   113      19.076  -3.467 -31.626  1.00 25.00           C
ATOM    114  CA  GLU   114      19.847  -1.333 -34.700  1.00 25.00           C
ATOM    115  CA  ASP   115      17.719   1.420 -33.083  1.00 25.00           C
ATOM    116  CA  MET   116      16.672   0.414 -29.540  1.00 25.00           C
ATOM    117  CA  LEU   117      15.782  -1.825 -26.591  1.00 25.00           C
ATOM    118  CA  PHE   118      14.821  -5.109 -24.893  1.00 25.00           C
ATOM    119  CA  THR   119      11.529  -5.605 -26.849  1.00 25.00           C
ATOM    120  CA  VAL   120       8.621  -7.999 -27.486  1.00 25.00           C
ATOM    121  CA  ARG   121       6.764 -10.613 -25.405  1.00 25.00           C
ATOM    122  CA  GLY   122       3.768 -11.734 -23.347  1.00 25.00           C
ATOM    123  CA  ARG   123       3.246 -10.225 -19.894  1.00 25.00           C
ATOM    124  CA  ILE   124       0.869 -12.590 -18.163  1.00 25.00           C
ATOM    125  CA  TRP   125      -0.498 -16.072 -18.535  1.00 25.00           C
ATOM    126  CA  ALA   126      -1.398 -18.853 -16.027  1.00 25.00           C
ATOM    127  CA  GLY   127      -3.454 -21.864 -16.951  1.00 25.00           C
ATOM    128  CA  GLU   128      -2.356 -21.743 -20.587  1.00 25.00           C
ATOM    129  CA  ARG   129      -0.031 -19.410 -22.519  1.00 25.00           C
ATOM    130  CA  THR   130      -1.440 -16.541 -24.453  1.00 25.00           C
ATOM    131  CA  LEU   131      -2.354 -13.089 -23.215  1.00 25.00           C
ATOM    132  CA  ILE   132      -2.502  -9.358 -23.810  1.00 25.00           C
ATOM    133  CA  THR   133      -0.097  -8.065 -26.504  1.00 25.00           C
ATOM    134  CA  GLY   134       1.942  -6.916 -23.520  1.00 25.00           C
ATOM    135  CA  THR   135       4.767  -5.268 -25.462  1.00 25.00           C
ATOM    136  CA  GLY   136       6.987  -2.292 -24.941  1.00 25.00           C
ATOM    137  CA  VAL   137       9.299   0.340 -23.585  1.00 25.00           C
ATOM    138  CA  PHE   138      12.949   1.364 -23.881  1.00 25.00           C
ATOM    139  CA  LYS   139      15.429   4.239 -23.714  1.00 25.00           C
ATOM    140  CA  ALA   140      18.693   2.700 -24.949  1.00 25.00           C
ATOM    141  CA  LEU   141      20.241   6.098 -24.641  1.00 25.00           C
ATOM    142  CA  SER   142      23.006   8.684 -24.373  1.00 25.00           C
ATOM    143  CA  ALA   143      24.991  11.917 -23.776  1.00 25.00           C
TER
END
