
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  128 (  128),  selected  128 , name T0322TS168_1-D1
# Molecule2: number of CA atoms  128 (  980),  selected  128 , name T0322_D1.pdb
# PARAMETERS: T0322TS168_1-D1.T0322_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   127        17 - 143         4.88     5.25
  LCS_AVERAGE:     98.54

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    63        43 - 105         1.99     5.41
  LCS_AVERAGE:     31.61

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        60 - 79          0.93     5.62
  LCS_AVERAGE:      8.18

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  128
LCS_GDT     G      16     G      16      5    7   16     3    4    5    6    7    7    7   10   12   12   13   15   15   16   18   33   38   63   67   69 
LCS_GDT     F      17     F      17      5    7  127     3    4    5    6    7    7    8   10   12   12   13   15   15   16   18   19   38   40   67   69 
LCS_GDT     S      18     S      18      5    7  127     3    4    5    6    7    7    7   10   12   12   34   40   51   68   75   78   92  106  114  116 
LCS_GDT     Q      19     Q      19      5    7  127     3    4    5    6    7    7    8   10   12   12   13   15   15   16   18   53   67   74   90  100 
LCS_GDT     L      20     L      20      5    7  127     3    4    5    6    7    7    9   10   12   12   13   17   19   19   27   31   35   39   43  108 
LCS_GDT     N      21     N      21      4    7  127     3    4    4    6    7    7    9   10   18   39   52   58  103  111  115  117  119  120  122  123 
LCS_GDT     W      22     W      22      4    7  127     3    4    4    5    7    7    9   10   12   39   74   99  111  114  117  118  121  121  122  123 
LCS_GDT     S      23     S      23      4    6  127     3   16   38   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     R      24     R      24      4    6  127     2   10   33   56   70   83   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G      25     G      25      4    6  127     3    4    7   20   33   48   67   82   95  102  109  112  114  116  119  120  121  121  122  123 
LCS_GDT     F      26     F      26      4    5  127     4    4    5   14   33   48   62   81   95  102  109  112  114  116  119  120  121  121  122  123 
LCS_GDT     G      27     G      27      4    5  127     4   18   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     R      28     R      28      4   11  127     4    4    7   30   62   85   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     Q      29     Q      29      4   11  127     4    6   17   37   51   75   89   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     I      30     I      30      4   11  127     3   10   17   26   49   71   89   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G      31     G      31      5   11  127     3    6   15   37   58   75   89   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     P      32     P      32      5   11  127     3    5    5    8    9   28   35   83   94  105  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L      33     L      33      5   11  127     3    5   17   26   51   75   89   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     F      34     F      34      5   11  127     3    5   14   40   58   75   89   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     E      35     E      35      5   11  127     3    8   16   26   50   72   85   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     H      36     H      36      4   11  127     3    4    6    8   35   63   81   94  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     R      37     R      37      4   11  127     3    4    6    8   14   35   48   64   79   95  106  110  114  116  119  120  121  121  122  123 
LCS_GDT     E      38     E      38      4   11  127     3    4    6    8   13   19   30   47   52   89   97  108  112  115  118  119  120  121  122  123 
LCS_GDT     G      39     G      39      5    8  127     3    4    6   14   24   45   56   75   88  100  107  110  114  116  119  120  121  121  122  123 
LCS_GDT     P      40     P      40      5    8  127     3    4    8   27   39   67   78   91   98  105  109  112  114  116  119  120  121  121  122  123 
LCS_GDT     G      41     G      41      5    6  127     3    4    6    8   16   24   28   50   72   88  100  108  112  116  119  120  121  121  122  123 
LCS_GDT     Q      42     Q      42      5   40  127     3    4    9   24   43   61   78   91  100  105  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     A      43     A      43     11   63  127     5   19   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     R      44     R      44     11   63  127     5   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L      45     L      45     11   63  127     3   18   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     A      46     A      46     11   63  127     6   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     F      47     F      47     11   63  127     3   12   33   56   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     R      48     R      48     11   63  127     6   17   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     V      49     V      49     11   63  127     6   19   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     E      50     E      50     11   63  127     4   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     E      51     E      51     11   63  127     6   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     H      52     H      52     11   63  127     6   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     H      53     H      53     11   63  127     6   19   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     T      54     T      54      3   63  127     3    3   18   24   55   70   82   94  101  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     N      55     N      55      4   63  127     3   19   40   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G      56     G      56     15   63  127     4   14   25   51   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L      57     L      57     15   63  127     3    7   18   31   57   74   90   94  100  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G      58     G      58     19   63  127     5   10   24   47   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     N      59     N      59     19   63  127     5   13   31   56   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     C      60     C      60     20   63  127     5   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     H      61     H      61     20   63  127    13   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G      62     G      62     20   63  127    13   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G      63     G      63     20   63  127    13   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     M      64     M      64     20   63  127    13   21   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L      65     L      65     20   63  127    13   19   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     M      66     M      66     20   63  127    13   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     S      67     S      67     20   63  127    13   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     F      68     F      68     20   63  127    13   19   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     A      69     A      69     20   63  127    13   19   40   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     D      70     D      70     20   63  127    13   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     M      71     M      71     20   63  127    13   19   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     A      72     A      72     20   63  127     5   19   36   56   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     W      73     W      73     20   63  127     5   18   36   56   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G      74     G      74     20   63  127     5   18   30   56   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     R      75     R      75     20   63  127    13   19   28   54   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     I      76     I      76     20   63  127     5   13   31   56   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     I      77     I      77     20   63  127     5   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     S      78     S      78     20   63  127     8   19   40   59   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L      79     L      79     20   63  127     8   19   39   57   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     Q      80     Q      80      3   63  127     3    4    9   25   36   56   78   89   94   97  105  110  114  115  119  120  121  121  122  123 
LCS_GDT     K      81     K      81      3   63  127     3   18   28   53   72   85   91   94   99  105  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     S      82     S      82      6   63  127     3    5    6    8   17   40   50   69   93  100  107  112  114  116  119  120  121  121  122  123 
LCS_GDT     Y      83     Y      83      6   63  127     9   19   33   54   74   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     S      84     S      84     19   63  127     5   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     W      85     W      85     19   63  127     6   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     V      86     V      86     19   63  127     3   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     T      87     T      87     19   63  127     3   17   39   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     V      88     V      88     19   63  127     3   14   39   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     R      89     R      89     19   63  127     7   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L      90     L      90     19   63  127     4   19   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     M      91     M      91     19   63  127     4   17   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     C      92     C      92     19   63  127     5   19   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     D      93     D      93     19   63  127     5   21   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     F      94     F      94     19   63  127     4   18   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L      95     L      95     19   63  127     4   18   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     S      96     S      96     19   63  127     4   19   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G      97     G      97     19   63  127     5   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     A      98     A      98     19   63  127     5   17   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     K      99     K      99     19   63  127     5   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L     100     L     100     19   63  127     4   17   40   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G     101     G     101     19   63  127     5   17   40   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     D     102     D     102     19   63  127     5   17   39   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     W     103     W     103     15   63  127     3    3   27   60   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     V     104     V     104     15   63  127     6   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     E     105     E     105      8   63  127     4   13   31   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G     106     G     106      8   50  127     4   13   34   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     E     107     E     107      8   50  127     4   12   35   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G     108     G     108      8   50  127     4   13   38   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     E     109     E     109      8   33  127     4   13   34   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L     110     L     110      8   33  127     4   12   30   58   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     I     111     I     111      8   33  127     4   12   31   58   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     S     112     S     112      8   33  127     3   12   34   61   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     E     113     E     113      5   33  127     3    8   12   39   63   81   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     E     114     E     114      5   33  127     2    5   13   27   55   79   90   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     D     115     D     115      4   33  127     1    4   15   32   55   79   89   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     M     116     M     116      4   33  127     1    4    7   15   47   76   86   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L     117     L     117      5   22  127     0    4    5   15   28   48   80   95  101  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     F     118     F     118      5   21  127     3    8    9   12   28   54   73   95  101  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     T     119     T     119      5   21  127     3    9   21   50   74   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     V     120     V     120      5   21  127     3    8   21   41   74   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     R     121     R     121      5   21  127     3   11   27   56   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G     122     G     122      5   21  127     3    7   22   52   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     R     123     R     123      4   21  127     3    8   21   44   69   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     I     124     I     124      4   21  127     4   11   34   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     W     125     W     125      4   21  127     3   11   34   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     A     126     A     126      4   21  127     3    5   19   55   73   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G     127     G     127      5   21  127     3   10   22   52   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     E     128     E     128      5   21  127     3   11   36   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     R     129     R     129      5   21  127     5   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     T     130     T     130      5   21  127     5   22   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L     131     L     131      5   21  127     5   14   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     I     132     I     132      5   21  127     3   12   34   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     T     133     T     133      5   21  127     3   10   27   58   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G     134     G     134      4   21  127     4   11   32   60   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     T     135     T     135      6   21  127     3    6   11   15   27   52   78   93   99  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     G     136     G     136      6   21  127     3   18   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     V     137     V     137      6   21  127     3    9   28   51   72   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     F     138     F     138      6   21  127     3   18   40   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     K     139     K     139      6   21  127     3   14   29   61   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     A     140     A     140      6   17  127    13   21   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     L     141     L     141      4   13  127     5   19   42   62   75   89   91   95  102  106  110  112  114  116  119  120  121  121  122  123 
LCS_GDT     S     142     S     142      3   11  127     0    4   12   15   18   28   63   91   94   98  106  111  114  116  119  120  121  121  122  123 
LCS_GDT     A     143     A     143      3   11  127     0    6   12   15   18   24   28   49   82   89  100  108  112  115  119  120  121  121  122  123 
LCS_AVERAGE  LCS_A:  46.11  (   8.18   31.61   98.54 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     22     42     62     75     89     91     95    102    106    110    112    114    116    119    120    121    121    122    123 
GDT PERCENT_CA  10.16  17.19  32.81  48.44  58.59  69.53  71.09  74.22  79.69  82.81  85.94  87.50  89.06  90.62  92.97  93.75  94.53  94.53  95.31  96.09
GDT RMS_LOCAL    0.24   0.74   1.08   1.41   1.64   1.90   1.96   2.12   2.43   2.57   2.72   2.83   2.98   3.14   3.35   3.43   3.51   3.51   3.61   3.72
GDT RMS_ALL_CA   6.33   5.35   5.34   5.32   5.31   5.30   5.31   5.31   5.39   5.40   5.39   5.37   5.33   5.49   5.44   5.41   5.39   5.39   5.36   5.39

#      Molecule1      Molecule2       DISTANCE
LGA    G      16      G      16         23.148
LGA    F      17      F      17         22.309
LGA    S      18      S      18         16.834
LGA    Q      19      Q      19         17.763
LGA    L      20      L      20         15.379
LGA    N      21      N      21          9.486
LGA    W      22      W      22          8.208
LGA    S      23      S      23          2.114
LGA    R      24      R      24          3.434
LGA    G      25      G      25          8.403
LGA    F      26      F      26          8.074
LGA    G      27      G      27          1.808
LGA    R      28      R      28          3.028
LGA    Q      29      Q      29          5.629
LGA    I      30      I      30          5.156
LGA    G      31      G      31          4.656
LGA    P      32      P      32          6.328
LGA    L      33      L      33          4.831
LGA    F      34      F      34          4.708
LGA    E      35      E      35          5.171
LGA    H      36      H      36          5.796
LGA    R      37      R      37          8.951
LGA    E      38      E      38         11.058
LGA    G      39      G      39          9.606
LGA    P      40      P      40          7.156
LGA    G      41      G      41          9.639
LGA    Q      42      Q      42          6.211
LGA    A      43      A      43          1.832
LGA    R      44      R      44          1.182
LGA    L      45      L      45          2.224
LGA    A      46      A      46          1.764
LGA    F      47      F      47          2.932
LGA    R      48      R      48          2.511
LGA    V      49      V      49          2.161
LGA    E      50      E      50          1.810
LGA    E      51      E      51          1.961
LGA    H      52      H      52          1.207
LGA    H      53      H      53          1.609
LGA    T      54      T      54          4.869
LGA    N      55      N      55          1.997
LGA    G      56      G      56          3.658
LGA    L      57      L      57          5.018
LGA    G      58      G      58          3.504
LGA    N      59      N      59          2.917
LGA    C      60      C      60          1.763
LGA    H      61      H      61          1.259
LGA    G      62      G      62          1.450
LGA    G      63      G      63          1.477
LGA    M      64      M      64          1.549
LGA    L      65      L      65          1.654
LGA    M      66      M      66          1.270
LGA    S      67      S      67          1.316
LGA    F      68      F      68          2.059
LGA    A      69      A      69          2.054
LGA    D      70      D      70          1.392
LGA    M      71      M      71          2.343
LGA    A      72      A      72          3.309
LGA    W      73      W      73          3.629
LGA    G      74      G      74          3.691
LGA    R      75      R      75          3.994
LGA    I      76      I      76          3.178
LGA    I      77      I      77          1.704
LGA    S      78      S      78          3.230
LGA    L      79      L      79          3.474
LGA    Q      80      Q      80          7.661
LGA    K      81      K      81          5.118
LGA    S      82      S      82          7.186
LGA    Y      83      Y      83          3.783
LGA    S      84      S      84          1.649
LGA    W      85      W      85          0.775
LGA    V      86      V      86          0.304
LGA    T      87      T      87          1.451
LGA    V      88      V      88          1.558
LGA    R      89      R      89          1.297
LGA    L      90      L      90          2.202
LGA    M      91      M      91          2.310
LGA    C      92      C      92          1.748
LGA    D      93      D      93          1.450
LGA    F      94      F      94          2.226
LGA    L      95      L      95          2.364
LGA    S      96      S      96          1.823
LGA    G      97      G      97          1.617
LGA    A      98      A      98          1.197
LGA    K      99      K      99          1.166
LGA    L     100      L     100          1.914
LGA    G     101      G     101          2.308
LGA    D     102      D     102          2.217
LGA    W     103      W     103          2.417
LGA    V     104      V     104          1.614
LGA    E     105      E     105          1.578
LGA    G     106      G     106          1.313
LGA    E     107      E     107          0.779
LGA    G     108      G     108          1.098
LGA    E     109      E     109          1.099
LGA    L     110      L     110          1.897
LGA    I     111      I     111          1.965
LGA    S     112      S     112          1.100
LGA    E     113      E     113          3.080
LGA    E     114      E     114          3.524
LGA    D     115      D     115          3.501
LGA    M     116      M     116          3.936
LGA    L     117      L     117          4.591
LGA    F     118      F     118          4.517
LGA    T     119      T     119          2.254
LGA    V     120      V     120          2.477
LGA    R     121      R     121          1.615
LGA    G     122      G     122          1.907
LGA    R     123      R     123          3.287
LGA    I     124      I     124          0.883
LGA    W     125      W     125          1.054
LGA    A     126      A     126          2.646
LGA    G     127      G     127          1.863
LGA    E     128      E     128          0.599
LGA    R     129      R     129          2.139
LGA    T     130      T     130          1.972
LGA    L     131      L     131          2.042
LGA    I     132      I     132          1.525
LGA    T     133      T     133          2.504
LGA    G     134      G     134          2.411
LGA    T     135      T     135          5.197
LGA    G     136      G     136          1.299
LGA    V     137      V     137          2.897
LGA    F     138      F     138          1.686
LGA    K     139      K     139          1.976
LGA    A     140      A     140          2.123
LGA    L     141      L     141          2.200
LGA    S     142      S     142          7.531
LGA    A     143      A     143          9.364

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  128  128    4.0     95    2.12    58.398    56.422     4.278

LGA_LOCAL      RMSD =  2.121  Number of atoms =   95  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.403  Number of atoms =  128 
Std_ALL_ATOMS  RMSD =  5.235  (standard rmsd on all 128 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.645460 * X  +  -0.661029 * Y  +   0.382652 * Z  +  11.059587
  Y_new =  -0.749573 * X  +   0.644440 * Y  +  -0.151119 * Z  +  -6.165835
  Z_new =  -0.146702 * X  +  -0.384367 * Y  +  -0.911450 * Z  + -15.019974 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.742513    0.399080  [ DEG:  -157.1344     22.8656 ]
  Theta =   0.147233    2.994359  [ DEG:     8.4359    171.5641 ]
  Phi   =  -2.281701    0.859892  [ DEG:  -130.7318     49.2682 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0322TS168_1-D1                               
REMARK     2: T0322_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0322TS168_1-D1.T0322_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  128  128   4.0   95   2.12  56.422     5.23
REMARK  ---------------------------------------------------------- 
MOLECULE T0322TS168_1-D1
PFRMAT TS
TARGET T0322
MODEL 1
PARENT N/A
ATOM     16  CA  GLY    16      21.285 -12.570   8.894  1.00 25.00           C
ATOM     17  CA  PHE    17      19.812  -9.057   9.304  1.00 25.00           C
ATOM     18  CA  SER    18      18.272  -6.887   6.561  1.00 25.00           C
ATOM     19  CA  GLN    19      17.438  -3.979   8.961  1.00 25.00           C
ATOM     20  CA  LEU    20      13.700  -4.704   8.764  1.00 25.00           C
ATOM     21  CA  ASN    21      13.124  -2.819   5.509  1.00 25.00           C
ATOM     22  CA  TRP    22      11.547   0.382   4.254  1.00 25.00           C
ATOM     23  CA  SER    23      13.088   0.108   0.770  1.00 25.00           C
ATOM     24  CA  ARG    24      11.863  -0.815  -2.695  1.00 25.00           C
ATOM     25  CA  GLY    25      11.384  -4.594  -2.985  1.00 25.00           C
ATOM     26  CA  PHE    26      10.489  -5.057  -6.702  1.00 25.00           C
ATOM     27  CA  GLY    27       8.844  -1.613  -7.026  1.00 25.00           C
ATOM     28  CA  ARG    28       5.375  -3.224  -6.815  1.00 25.00           C
ATOM     29  CA  GLN    29       6.436  -5.158  -3.685  1.00 25.00           C
ATOM     30  CA  ILE    30       3.958  -7.777  -5.001  1.00 25.00           C
ATOM     31  CA  GLY    31       6.037 -10.386  -6.850  1.00 25.00           C
ATOM     32  CA  PRO    32       8.826  -9.168  -9.196  1.00 25.00           C
ATOM     33  CA  LEU    33      10.120 -12.711  -8.704  1.00 25.00           C
ATOM     34  CA  PHE    34      11.468 -14.185 -11.951  1.00 25.00           C
ATOM     35  CA  GLU    35      10.736 -17.504 -13.593  1.00 25.00           C
ATOM     36  CA  HIS    36      10.398 -18.562 -17.189  1.00 25.00           C
ATOM     37  CA  ARG    37      12.959 -17.190 -19.623  1.00 25.00           C
ATOM     38  CA  GLU    38      13.642 -18.461 -23.107  1.00 25.00           C
ATOM     39  CA  GLY    39      16.581 -17.712 -25.467  1.00 25.00           C
ATOM     40  CA  PRO    40      19.298 -16.286 -23.160  1.00 25.00           C
ATOM     41  CA  GLY    41      18.127 -12.725 -23.805  1.00 25.00           C
ATOM     42  CA  GLN    42      14.916 -12.910 -21.721  1.00 25.00           C
ATOM     43  CA  ALA    43      13.934 -11.630 -18.269  1.00 25.00           C
ATOM     44  CA  ARG    44      10.808 -13.249 -16.904  1.00 25.00           C
ATOM     45  CA  LEU    45       8.937 -10.424 -15.068  1.00 25.00           C
ATOM     46  CA  ALA    46       6.790 -12.377 -12.619  1.00 25.00           C
ATOM     47  CA  PHE    47       3.603 -10.465 -11.788  1.00 25.00           C
ATOM     48  CA  ARG    48       1.449 -12.570  -9.383  1.00 25.00           C
ATOM     49  CA  VAL    49      -2.040 -11.100  -9.815  1.00 25.00           C
ATOM     50  CA  GLU    50      -3.102 -11.275  -6.185  1.00 25.00           C
ATOM     51  CA  GLU    51      -5.699  -8.696  -5.200  1.00 25.00           C
ATOM     52  CA  HIS    52      -4.081  -5.231  -4.996  1.00 25.00           C
ATOM     53  CA  HIS    53      -3.640  -5.186  -8.800  1.00 25.00           C
ATOM     54  CA  THR    54      -6.000  -2.232  -8.518  1.00 25.00           C
ATOM     55  CA  ASN    55      -9.119  -4.187  -9.381  1.00 25.00           C
ATOM     56  CA  GLY    56     -12.893  -3.687  -9.611  1.00 25.00           C
ATOM     57  CA  LEU    57     -14.032  -5.873 -12.473  1.00 25.00           C
ATOM     58  CA  GLY    58     -12.088  -8.695 -10.715  1.00 25.00           C
ATOM     59  CA  ASN    59     -10.139  -8.870 -13.961  1.00 25.00           C
ATOM     60  CA  CYS    60      -6.313  -8.743 -13.633  1.00 25.00           C
ATOM     61  CA  HIS    61      -6.100  -4.905 -13.609  1.00 25.00           C
ATOM     62  CA  GLY    62      -4.746  -4.887 -17.129  1.00 25.00           C
ATOM     63  CA  GLY    63      -3.068  -1.477 -16.653  1.00 25.00           C
ATOM     64  CA  MET    64      -1.185  -2.805 -13.594  1.00 25.00           C
ATOM     65  CA  LEU    65      -0.029  -5.856 -15.599  1.00 25.00           C
ATOM     66  CA  MET    66       1.175  -3.572 -18.427  1.00 25.00           C
ATOM     67  CA  SER    67       3.089  -1.417 -15.906  1.00 25.00           C
ATOM     68  CA  PHE    68       4.709  -4.553 -14.418  1.00 25.00           C
ATOM     69  CA  ALA    69       5.720  -5.723 -17.923  1.00 25.00           C
ATOM     70  CA  ASP    70       7.238  -2.284 -18.659  1.00 25.00           C
ATOM     71  CA  MET    71       9.188  -2.412 -15.366  1.00 25.00           C
ATOM     72  CA  ALA    72      10.482  -5.909 -16.239  1.00 25.00           C
ATOM     73  CA  TRP    73      11.570  -4.670 -19.696  1.00 25.00           C
ATOM     74  CA  GLY    74      13.387  -1.706 -18.088  1.00 25.00           C
ATOM     75  CA  ARG    75      15.156  -4.078 -15.655  1.00 25.00           C
ATOM     76  CA  ILE    76      16.213  -6.320 -18.574  1.00 25.00           C
ATOM     77  CA  ILE    77      17.566  -3.273 -20.459  1.00 25.00           C
ATOM     78  CA  SER    78      19.527  -2.192 -17.352  1.00 25.00           C
ATOM     79  CA  LEU    79      20.982  -5.718 -17.012  1.00 25.00           C
ATOM     80  CA  GLN    80      23.892  -3.792 -15.433  1.00 25.00           C
ATOM     81  CA  LYS    81      24.905  -0.879 -17.605  1.00 25.00           C
ATOM     82  CA  SER    82      24.926   2.235 -19.759  1.00 25.00           C
ATOM     83  CA  TYR    83      21.443   3.424 -18.736  1.00 25.00           C
ATOM     84  CA  SER    84      18.648   3.538 -16.111  1.00 25.00           C
ATOM     85  CA  TRP    85      16.397   2.910 -19.145  1.00 25.00           C
ATOM     86  CA  VAL    86      12.836   4.154 -19.657  1.00 25.00           C
ATOM     87  CA  THR    87       9.233   3.202 -20.499  1.00 25.00           C
ATOM     88  CA  VAL    88      10.179   4.537 -23.995  1.00 25.00           C
ATOM     89  CA  ARG    89       7.333   3.411 -26.282  1.00 25.00           C
ATOM     90  CA  LEU    90       3.944   2.243 -24.952  1.00 25.00           C
ATOM     91  CA  MET    91       0.862   0.472 -26.307  1.00 25.00           C
ATOM     92  CA  CYS    92      -0.897  -2.704 -25.178  1.00 25.00           C
ATOM     93  CA  ASP    93      -3.312  -5.094 -26.821  1.00 25.00           C
ATOM     94  CA  PHE    94      -5.233  -5.962 -23.707  1.00 25.00           C
ATOM     95  CA  LEU    95      -6.671  -9.253 -25.100  1.00 25.00           C
ATOM     96  CA  SER    96      -8.364 -11.980 -23.138  1.00 25.00           C
ATOM     97  CA  GLY    97      -7.884 -12.028 -19.368  1.00 25.00           C
ATOM     98  CA  ALA    98      -7.312 -13.388 -15.846  1.00 25.00           C
ATOM     99  CA  LYS    99      -8.669 -14.376 -12.509  1.00 25.00           C
ATOM    100  CA  LEU   100      -7.947 -15.198  -8.891  1.00 25.00           C
ATOM    101  CA  GLY   101      -5.037 -17.612  -8.838  1.00 25.00           C
ATOM    102  CA  ASP   102      -4.451 -17.631 -12.628  1.00 25.00           C
ATOM    103  CA  TRP   103      -1.212 -15.661 -12.718  1.00 25.00           C
ATOM    104  CA  VAL   104       1.474 -13.993 -14.834  1.00 25.00           C
ATOM    105  CA  GLU   105       4.082 -16.389 -16.062  1.00 25.00           C
ATOM    106  CA  GLY   106       5.789 -13.411 -17.588  1.00 25.00           C
ATOM    107  CA  GLU   107       7.682 -12.981 -20.857  1.00 25.00           C
ATOM    108  CA  GLY   108      10.056 -10.598 -22.628  1.00 25.00           C
ATOM    109  CA  GLU   109      11.793 -12.223 -25.610  1.00 25.00           C
ATOM    110  CA  LEU   110      14.520  -9.669 -25.908  1.00 25.00           C
ATOM    111  CA  ILE   111      14.373  -9.391 -29.688  1.00 25.00           C
ATOM    112  CA  SER   112      15.313  -6.539 -32.084  1.00 25.00           C
ATOM    113  CA  GLU   113      17.458  -3.952 -33.955  1.00 25.00           C
ATOM    114  CA  GLU   114      17.843  -0.849 -36.118  1.00 25.00           C
ATOM    115  CA  ASP   115      18.719   0.792 -32.803  1.00 25.00           C
ATOM    116  CA  MET   116      17.868  -0.977 -29.580  1.00 25.00           C
ATOM    117  CA  LEU   117      16.174  -2.716 -26.663  1.00 25.00           C
ATOM    118  CA  PHE   118      13.898  -4.817 -24.457  1.00 25.00           C
ATOM    119  CA  THR   119      11.695  -4.944 -27.538  1.00 25.00           C
ATOM    120  CA  VAL   120       8.824  -6.546 -25.645  1.00 25.00           C
ATOM    121  CA  ARG   121       6.728  -9.309 -27.314  1.00 25.00           C
ATOM    122  CA  GLY   122       4.367 -10.846 -24.760  1.00 25.00           C
ATOM    123  CA  ARG   123       3.446 -10.258 -21.106  1.00 25.00           C
ATOM    124  CA  ILE   124       1.271 -13.128 -19.941  1.00 25.00           C
ATOM    125  CA  TRP   125       0.123 -16.731 -19.321  1.00 25.00           C
ATOM    126  CA  ALA   126       0.007 -19.552 -16.772  1.00 25.00           C
ATOM    127  CA  GLY   127      -2.152 -22.658 -16.485  1.00 25.00           C
ATOM    128  CA  GLU   128      -2.645 -22.210 -20.166  1.00 25.00           C
ATOM    129  CA  ARG   129      -2.904 -19.311 -22.593  1.00 25.00           C
ATOM    130  CA  THR   130      -1.275 -16.382 -24.315  1.00 25.00           C
ATOM    131  CA  LEU   131      -2.856 -13.108 -23.003  1.00 25.00           C
ATOM    132  CA  ILE   132      -2.049  -9.605 -21.860  1.00 25.00           C
ATOM    133  CA  THR   133      -0.047  -8.302 -24.747  1.00 25.00           C
ATOM    134  CA  GLY   134       2.989  -6.018 -25.370  1.00 25.00           C
ATOM    135  CA  THR   135       3.858  -2.764 -23.574  1.00 25.00           C
ATOM    136  CA  GLY   136       7.145  -1.662 -25.238  1.00 25.00           C
ATOM    137  CA  VAL   137      10.697  -0.884 -24.278  1.00 25.00           C
ATOM    138  CA  PHE   138      13.966   0.789 -23.483  1.00 25.00           C
ATOM    139  CA  LYS   139      16.688   2.435 -25.642  1.00 25.00           C
ATOM    140  CA  ALA   140      19.094   4.137 -23.223  1.00 25.00           C
ATOM    141  CA  LEU   141      19.483   7.358 -21.237  1.00 25.00           C
ATOM    142  CA  SER   142      20.203  11.071 -21.011  1.00 25.00           C
ATOM    143  CA  ALA   143      22.838  10.854 -18.269  1.00 25.00           C
TER
END
