
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  123 , name T0322TS677_2
# Molecule2: number of CA atoms  142 ( 1089),  selected  123 , name T0322.pdb
# PARAMETERS: T0322TS677_2.T0322.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   119        16 - 140         4.60     7.10
  LCS_AVERAGE:     81.31

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    96        42 - 140         1.75     7.54
  LCS_AVERAGE:     53.93

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41        86 - 126         0.98     7.52
  LCS_AVERAGE:     15.53

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     A      12     A      12      3    3   10     2    3    3    3    4    4    4    5    7    9   12   12   13   17   21   21   22   30   30   35 
LCS_GDT     I      13     I      13      3    4   10     2    3    3    4    4    4    6    7    9   13   16   20   23   23   27   29   33   36   38   41 
LCS_GDT     P      14     P      14      4    5   10     2    4    4    4    5    5    5    6    7   10   12   14   18   22   27   29   33   34   35   40 
LCS_GDT     E      15     E      15      4    5   10     3    4    4    4    5    5    5    6    7    7   12   20   23   23   27   29   33   34   35   41 
LCS_GDT     G      16     G      16      4    5  119     3    4    4    4    5    5    5   10   11   15   19   22   24   26   29   31   37   41   44   49 
LCS_GDT     F      17     F      17      4    5  119     3    4    4    4    5    5    6   10   11   15   19   22   24   38   42   46   51   57   95   98 
LCS_GDT     S      18     S      18      3    5  119     0    3    3    3    5    5    6   10   11   16   19   22   24   26   42   46   51   57   95  102 
LCS_GDT     Q      19     Q      19      3    3  119     0    3    3    3    3    3    6   10   11   16   19   22   26   35   49   57   93   98  104  110 
LCS_GDT     N      21     N      21      3    3  119     0    3    3    3    9   32   38   60   84   96  101  107  111  112  113  113  115  115  115  115 
LCS_GDT     W      22     W      22      3    5  119     3    3    3    4    5    9   38   79   93  100  107  109  111  112  113  113  115  115  115  115 
LCS_GDT     S      23     S      23      3    5  119     3    3    3    4    4    6    8   10   15   15   24   29   35   58   98  112  115  115  115  115 
LCS_GDT     R      24     R      24      3    9  119     3    3    3    5    7    9   15   31   46   74   95  105  106  109  111  113  115  115  115  115 
LCS_GDT     G      25     G      25      6   11  119     3   11   22   34   51   68   97  101  104  107  109  109  110  112  113  113  115  115  115  115 
LCS_GDT     F      26     F      26      6   11  119     5   14   27   48   70   89   97  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G      27     G      27      6   11  119     6   11   27   52   77   92  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     R      28     R      28      6   11  119     6   12   37   57   77   93  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     Q      29     Q      29      6   11  119     6   16   40   61   84   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     I      30     I      30      6   11  119     6   23   53   79   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     P      32     P      32      5   11  119    13   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     L      33     L      33      5   11  119    13   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     F      34     F      34      5   11  119    14   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     E      35     E      35      5   11  119    16   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     H      36     H      36      5   11  119     8   45   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     R      37     R      37      3   10  119     3    3    5    8   65   94  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G      39     G      39      4    6  119     4    4   12   24   33   51   80   95  104  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     P      40     P      40      4    5  119     4    4    6   10   15   22   40   65   83   93  101  106  111  112  113  113  115  115  115  115 
LCS_GDT     G      41     G      41      4    5  119     4    4    4    5   13   16   27   38   62   79   93  102  109  112  113  113  115  115  115  115 
LCS_GDT     Q      42     Q      42      4   96  119     4    4    4    9   35   66   81   96  104  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     A      43     A      43     11   96  119    11   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     R      44     R      44     11   96  119    16   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     L      45     L      45     11   96  119    16   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     A      46     A      46     11   96  119    16   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     R      48     R      48     11   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     V      49     V      49     11   96  119    18   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     E      50     E      50     11   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     E      51     E      51     11   96  119     6   40   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     H      52     H      52     11   96  119    14   40   69   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     T      54     T      54     11   96  119    10   46   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     N      55     N      55     12   96  119    12   46   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G      56     G      56     12   96  119     3    6   14   32   72   93   95  101  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     L      57     L      57     20   96  119     4    8   19   43   63   93   95  101  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G      58     G      58     20   96  119     4   17   38   77   90   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     N      59     N      59     20   96  119     9   41   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     C      60     C      60     20   96  119    12   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     H      61     H      61     20   96  119    11   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G      62     G      62     20   96  119    11   39   70   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G      63     G      63     20   96  119    11   39   70   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     M      64     M      64     20   96  119    14   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     L      65     L      65     20   96  119    15   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     M      66     M      66     20   96  119    14   45   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     S      67     S      67     20   96  119    11   42   71   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     F      68     F      68     20   96  119    14   45   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     A      69     A      69     20   96  119    13   45   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     D      70     D      70     20   96  119    14   42   71   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     M      71     M      71     20   96  119    14   44   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     A      72     A      72     20   96  119     4   39   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     W      73     W      73     20   96  119     4   22   55   75   92   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G      74     G      74     20   96  119     4   24   48   74   89   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     R      75     R      75     20   96  119     8   36   71   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     I      76     I      76     20   96  119    14   46   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     I      77     I      77     20   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     S      78     S      78     20   96  119     5   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     Q      80     Q      80      8   96  119     3    6    9   77   89   96   99  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     K      81     K      81     27   96  119     3    6   65   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     S      82     S      82     27   96  119     3   26   64   81   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     Y      83     Y      83     27   96  119     5    7   46   73   88   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     S      84     S      84     27   96  119     4   26   53   80   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     W      85     W      85     31   96  119    12   42   71   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     V      86     V      86     41   96  119    14   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     T      87     T      87     41   96  119    16   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     V      88     V      88     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     R      89     R      89     41   96  119    13   46   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     L      90     L      90     41   96  119    14   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     M      91     M      91     41   96  119    15   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     C      92     C      92     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     D      93     D      93     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     F      94     F      94     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     L      95     L      95     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     S      96     S      96     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G      97     G      97     41   96  119    16   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     A      98     A      98     41   96  119    14   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     K      99     K      99     41   96  119    14   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     L     100     L     100     41   96  119    14   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G     101     G     101     41   96  119    15   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     D     102     D     102     41   96  119    18   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     W     103     W     103     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     V     104     V     104     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     E     105     E     105     41   96  119    18   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G     106     G     106     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     E     107     E     107     41   96  119    11   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G     108     G     108     41   96  119    13   37   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     E     109     E     109     41   96  119    13   37   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     L     110     L     110     41   96  119    16   46   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     I     111     I     111     41   96  119     9   46   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     S     112     S     112     41   96  119    15   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     E     113     E     113     41   96  119     3   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     E     114     E     114     41   96  119     5   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     D     115     D     115     41   96  119    12   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     M     116     M     116     41   96  119     3   20   59   82   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     L     117     L     117     41   96  119     9   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     F     118     F     118     41   96  119    11   46   71   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     T     119     T     119     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     V     120     V     120     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     R     121     R     121     41   96  119    13   37   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G     122     G     122     41   96  119    10   31   70   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     R     123     R     123     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     I     124     I     124     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     W     125     W     125     41   96  119    18   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     A     126     A     126     41   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G     127     G     127     14   96  119     3    3   39   61   91   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     E     128     E     128     14   96  119     4   24   66   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     R     129     R     129     14   96  119     7   41   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     T     130     T     130     14   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     L     131     L     131     14   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     I     132     I     132     14   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     T     133     T     133     14   96  119     8   44   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G     134     G     134     14   96  119     6   31   64   85   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     T     135     T     135     13   96  119    20   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     G     136     G     136     13   96  119    14   47   73   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     V     137     V     137     13   96  119    11   46   71   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     F     138     F     138     13   96  119    11   46   71   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     K     139     K     139     13   96  119    12   46   71   86   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_GDT     A     140     A     140     13   96  119     9   25   59   84   93   96  101  104  105  108  109  109  111  112  113  113  115  115  115  115 
LCS_AVERAGE  LCS_A:  50.26  (  15.53   53.93   81.31 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     20     47     73     86     93     96    101    104    105    108    109    109    111    112    113    113    115    115    115    115 
GDT PERCENT_CA  14.08  33.10  51.41  60.56  65.49  67.61  71.13  73.24  73.94  76.06  76.76  76.76  78.17  78.87  79.58  79.58  80.99  80.99  80.99  80.99
GDT RMS_LOCAL    0.38   0.69   0.97   1.13   1.30   1.37   1.61   1.73   1.83   2.05   2.12   2.12   2.49   2.55   2.72   2.72   2.99   2.99   2.99   2.99
GDT RMS_ALL_CA   7.55   7.57   7.60   7.55   7.51   7.53   7.56   7.60   7.60   7.56   7.59   7.59   7.42   7.45   7.41   7.41   7.42   7.42   7.42   7.42

#      Molecule1      Molecule2       DISTANCE
LGA    A      12      A      12         37.195
LGA    I      13      I      13         31.280
LGA    P      14      P      14         32.414
LGA    E      15      E      15         31.343
LGA    G      16      G      16         24.469
LGA    F      17      F      17         21.488
LGA    S      18      S      18         20.890
LGA    Q      19      Q      19         18.124
LGA    N      21      N      21          9.467
LGA    W      22      W      22          7.855
LGA    S      23      S      23         10.638
LGA    R      24      R      24          8.639
LGA    G      25      G      25          5.070
LGA    F      26      F      26          3.712
LGA    G      27      G      27          3.175
LGA    R      28      R      28          3.312
LGA    Q      29      Q      29          3.059
LGA    I      30      I      30          1.894
LGA    P      32      P      32          1.199
LGA    L      33      L      33          0.776
LGA    F      34      F      34          1.016
LGA    E      35      E      35          0.750
LGA    H      36      H      36          1.158
LGA    R      37      R      37          3.662
LGA    G      39      G      39          6.791
LGA    P      40      P      40         10.889
LGA    G      41      G      41         11.352
LGA    Q      42      Q      42          6.491
LGA    A      43      A      43          1.867
LGA    R      44      R      44          0.538
LGA    L      45      L      45          0.724
LGA    A      46      A      46          0.721
LGA    R      48      R      48          0.795
LGA    V      49      V      49          0.887
LGA    E      50      E      50          1.374
LGA    E      51      E      51          2.406
LGA    H      52      H      52          2.628
LGA    T      54      T      54          2.250
LGA    N      55      N      55          2.464
LGA    G      56      G      56          6.491
LGA    L      57      L      57          6.066
LGA    G      58      G      58          3.936
LGA    N      59      N      59          2.152
LGA    C      60      C      60          1.329
LGA    H      61      H      61          1.288
LGA    G      62      G      62          1.331
LGA    G      63      G      63          0.898
LGA    M      64      M      64          0.251
LGA    L      65      L      65          0.304
LGA    M      66      M      66          0.749
LGA    S      67      S      67          0.916
LGA    F      68      F      68          0.777
LGA    A      69      A      69          1.006
LGA    D      70      D      70          1.269
LGA    M      71      M      71          1.375
LGA    A      72      A      72          1.464
LGA    W      73      W      73          2.815
LGA    G      74      G      74          3.359
LGA    R      75      R      75          2.288
LGA    I      76      I      76          1.852
LGA    I      77      I      77          1.581
LGA    S      78      S      78          1.377
LGA    Q      80      Q      80          3.990
LGA    K      81      K      81          1.229
LGA    S      82      S      82          2.305
LGA    Y      83      Y      83          3.166
LGA    S      84      S      84          2.462
LGA    W      85      W      85          2.125
LGA    V      86      V      86          1.589
LGA    T      87      T      87          1.585
LGA    V      88      V      88          1.567
LGA    R      89      R      89          1.558
LGA    L      90      L      90          1.619
LGA    M      91      M      91          1.510
LGA    C      92      C      92          0.986
LGA    D      93      D      93          1.435
LGA    F      94      F      94          0.965
LGA    L      95      L      95          1.240
LGA    S      96      S      96          1.038
LGA    G      97      G      97          0.307
LGA    A      98      A      98          0.796
LGA    K      99      K      99          0.802
LGA    L     100      L     100          0.865
LGA    G     101      G     101          0.787
LGA    D     102      D     102          0.384
LGA    W     103      W     103          0.693
LGA    V     104      V     104          0.265
LGA    E     105      E     105          0.603
LGA    G     106      G     106          0.802
LGA    E     107      E     107          0.869
LGA    G     108      G     108          2.228
LGA    E     109      E     109          2.560
LGA    L     110      L     110          1.723
LGA    I     111      I     111          1.358
LGA    S     112      S     112          0.941
LGA    E     113      E     113          1.351
LGA    E     114      E     114          1.322
LGA    D     115      D     115          0.901
LGA    M     116      M     116          3.177
LGA    L     117      L     117          1.288
LGA    F     118      F     118          1.667
LGA    T     119      T     119          0.520
LGA    V     120      V     120          1.000
LGA    R     121      R     121          1.876
LGA    G     122      G     122          2.127
LGA    R     123      R     123          1.020
LGA    I     124      I     124          0.771
LGA    W     125      W     125          0.967
LGA    A     126      A     126          0.557
LGA    G     127      G     127          2.340
LGA    E     128      E     128          3.128
LGA    R     129      R     129          2.115
LGA    T     130      T     130          0.991
LGA    L     131      L     131          1.100
LGA    I     132      I     132          0.807
LGA    T     133      T     133          1.134
LGA    G     134      G     134          2.056
LGA    T     135      T     135          0.409
LGA    G     136      G     136          0.895
LGA    V     137      V     137          1.633
LGA    F     138      F     138          1.936
LGA    K     139      K     139          2.250
LGA    A     140      A     140          3.166

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  127  142    4.0    104    1.73    61.620    62.924     5.673

LGA_LOCAL      RMSD =  1.733  Number of atoms =  104  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  7.722  Number of atoms =  123 
Std_ALL_ATOMS  RMSD =  6.929  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.834884 * X  +   0.283670 * Y  +  -0.471699 * Z  +  36.819252
  Y_new =   0.549956 * X  +  -0.394482 * Y  +   0.736161 * Z  + -43.805706
  Z_new =   0.022750 * X  +  -0.874023 * Y  +  -0.485352 * Z  +  68.176018 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.077706    1.063887  [ DEG:  -119.0438     60.9562 ]
  Theta =  -0.022752   -3.118840  [ DEG:    -1.3036   -178.6964 ]
  Phi   =   0.582482   -2.559111  [ DEG:    33.3737   -146.6263 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0322TS677_2                                  
REMARK     2: T0322.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0322TS677_2.T0322.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  127  142   4.0  104   1.73  62.924     6.93
REMARK  ---------------------------------------------------------- 
MOLECULE T0322TS677_2
PFRMAT TS
TARGET T0322
MODEL  2  REFINED
PARENT 2fs2_A
ATOM      0  CA  ALA     8      33.419   6.829 -15.474  1.00 91.00
ATOM      1  CA  GLN     9      32.981   3.073 -15.778  1.00 91.00
ATOM      2  CA  THR    10      32.154   3.477 -12.115  1.00 91.00
ATOM      3  CA  ALA    11      29.431   6.049 -12.893  1.00 99.00
ATOM      4  CA  ALA    12      27.919   3.637 -15.460  1.00 99.00
ATOM      5  CA  ILE    13      28.118   0.824 -12.832  1.00 99.00
ATOM      6  CA  PRO    14      26.529   3.115 -10.301  1.00 80.00
ATOM      7  CA  GLU    15      23.619   3.900 -12.787  1.00 99.00
ATOM      8  CA  GLY    16      23.054   0.157 -13.405  1.00 77.00
ATOM      9  CA  PHE    17      22.860  -0.480  -9.695  1.00 81.00
ATOM     10  CA  SER    18      20.615   2.554  -9.276  1.00 76.00
ATOM     11  CA  GLN    19      18.236   1.387 -12.088  1.00 99.00
ATOM     13  CA  ASN    21      17.262  -0.680  -7.076  1.00 78.00
ATOM     14  CA  TRP    22      14.414   1.263  -8.631  1.00 90.00
ATOM     15  CA  SER    23      13.018  -1.621 -10.554  1.00 73.00
ATOM     16  CA  ARG    24      13.182  -3.798  -7.439  1.00 62.00
ATOM     17  CA  GLY    25      11.240  -1.230  -5.423  1.00 32.00
ATOM     18  CA  PHE    26       8.423  -1.183  -7.952  1.00 52.00
ATOM     19  CA  GLY    27       8.385  -4.982  -8.049  1.00 44.00
ATOM     20  CA  ARG    28       8.209  -5.191  -4.283  1.00 47.00
ATOM     21  CA  GLN    29       5.322  -2.746  -4.255  1.00 59.00
ATOM     22  CA  ILE    30       3.468  -4.755  -6.864  1.00 60.00
ATOM     23  CA  PRO    32       4.271  -8.200  -5.400  1.00 85.00
ATOM     24  CA  LEU    33       6.412  -9.281  -8.348  1.00 83.00
ATOM     25  CA  PHE    34       9.065 -11.934  -8.038  1.00 99.00
ATOM     26  CA  GLU    35      12.006 -12.720 -10.424  1.00 99.00
ATOM     27  CA  HIS    36      12.009 -16.336 -11.538  1.00 99.00
ATOM     28  CA  ARG    37      14.647 -16.368 -14.302  1.00 76.00
ATOM     30  CA  GLY    39      19.604 -13.487 -18.253  1.00 54.00
ATOM     31  CA  PRO    40      20.935 -11.486 -21.080  1.00 44.00
ATOM     32  CA  GLY    41      18.049  -9.598 -22.683  1.00 54.00
ATOM     33  CA  GLN    42      15.244 -11.435 -20.922  1.00 62.00
ATOM     34  CA  ALA    43      13.372 -11.766 -17.664  1.00 61.00
ATOM     35  CA  ARG    44      10.547 -13.953 -16.404  1.00 73.00
ATOM     36  CA  LEU    45       8.764 -12.510 -13.317  1.00 70.00
ATOM     37  CA  ALA    46       5.548 -13.686 -11.500  1.00 73.00
ATOM     39  CA  ARG    48      -0.500 -13.310  -7.971  1.00 97.00
ATOM     40  CA  VAL    49      -3.709 -11.405  -8.753  1.00 97.00
ATOM     41  CA  GLU    50      -5.292 -10.378  -5.399  1.00 99.00
ATOM     42  CA  GLU    51      -8.874  -9.245  -4.888  1.00 99.00
ATOM     43  CA  HIS    52      -7.543  -5.655  -4.597  1.00 99.00
ATOM     45  CA  THR    54     -10.095  -6.573  -9.663  1.00 69.00
ATOM     46  CA  ASN    55     -12.180  -4.354 -11.896  1.00 97.00
ATOM     47  CA  GLY    56     -16.025  -4.562 -11.926  1.00 67.00
ATOM     48  CA  LEU    57     -16.066  -7.769 -13.969  1.00 74.00
ATOM     49  CA  GLY    58     -13.831  -9.394 -11.285  1.00 58.00
ATOM     50  CA  ASN    59     -10.656  -9.569 -13.412  1.00 76.00
ATOM     51  CA  CYS    60      -7.281  -7.994 -13.213  1.00 31.00
ATOM     52  CA  HIS    61      -7.402  -4.344 -14.274  1.00 31.00
ATOM     53  CA  GLY    62      -5.505  -3.573 -17.472  1.00 43.00
ATOM     54  CA  GLY    63      -3.210  -1.170 -15.547  1.00 47.00
ATOM     55  CA  MET    64      -1.936  -3.833 -13.284  1.00 68.00
ATOM     56  CA  LEU    65      -1.336  -6.085 -16.205  1.00 78.00
ATOM     57  CA  MET    66       0.481  -3.113 -17.849  1.00 72.00
ATOM     58  CA  SER    67       2.674  -2.702 -14.748  1.00 46.00
ATOM     59  CA  PHE    68       3.493  -6.277 -14.417  1.00 57.00
ATOM     60  CA  ALA    69       4.618  -6.226 -18.107  1.00 20.00
ATOM     61  CA  ASP    70       6.504  -2.825 -17.583  1.00 22.00
ATOM     62  CA  MET    71       8.393  -4.288 -14.685  1.00 18.00
ATOM     63  CA  ALA    72       9.393  -7.444 -16.713  1.00  6.00
ATOM     64  CA  TRP    73      10.499  -5.102 -19.459  1.00  2.00
ATOM     65  CA  GLY    74      12.607  -2.940 -17.097  1.00  5.00
ATOM     66  CA  ARG    75      14.257  -6.095 -15.829  1.00  0.00
ATOM     67  CA  ILE    76      15.036  -7.243 -19.405  1.00 20.00
ATOM     68  CA  ILE    77      16.655  -3.738 -20.160  1.00 37.00
ATOM     69  CA  SER    78      18.584  -3.926 -16.896  1.00 41.00
ATOM     70  CA  GLN    80      19.853  -7.490 -17.524  1.00 51.00
ATOM     71  CA  LYS    81      22.239  -5.785 -19.969  1.00 42.00
ATOM     72  CA  SER    82      22.739  -2.366 -18.472  1.00 47.00
ATOM     73  CA  TYR    83      20.460  -0.626 -21.008  1.00 33.00
ATOM     74  CA  SER    84      18.137   1.385 -18.928  1.00 57.00
ATOM     75  CA  TRP    85      15.244   2.597 -21.141  1.00 53.00
ATOM     76  CA  VAL    86      11.656   3.875 -21.075  1.00 80.00
ATOM     77  CA  THR    87       8.816   2.812 -23.216  1.00 95.00
ATOM     78  CA  VAL    88       7.852   5.244 -25.853  1.00 98.00
ATOM     79  CA  ARG    89       4.989   3.148 -27.351  1.00 99.00
ATOM     80  CA  LEU    90       3.280  -0.136 -26.445  1.00 95.00
ATOM     81  CA  MET    91       0.769  -2.434 -28.193  1.00 83.00
ATOM     82  CA  CYS    92      -1.253  -4.980 -26.098  1.00 60.00
ATOM     83  CA  ASP    93      -3.632  -7.813 -27.044  1.00 89.00
ATOM     84  CA  PHE    94      -5.733  -9.022 -24.046  1.00 57.00
ATOM     85  CA  LEU    95      -6.680 -12.700 -24.763  1.00 60.00
ATOM     86  CA  SER    96      -8.160 -13.925 -21.433  1.00 61.00
ATOM     87  CA  GLY    97      -8.737 -12.152 -18.151  1.00 66.00
ATOM     88  CA  ALA    98      -6.534 -12.722 -15.183  1.00 66.00
ATOM     89  CA  LYS    99      -8.716 -13.611 -12.216  1.00 50.00
ATOM     90  CA  LEU   100      -8.160 -13.254  -8.549  1.00 66.00
ATOM     91  CA  GLY   101      -5.772 -15.954  -7.419  1.00 84.00
ATOM     92  CA  ASP   102      -4.149 -16.589 -10.824  1.00 73.00
ATOM     93  CA  TRP   103      -0.371 -16.609 -10.836  1.00 69.00
ATOM     94  CA  VAL   104       0.669 -14.674 -13.854  1.00 69.00
ATOM     95  CA  GLU   105       4.110 -15.040 -15.413  1.00 70.00
ATOM     96  CA  GLY   106       5.346 -12.280 -17.546  1.00 40.00
ATOM     97  CA  GLU   107       8.324 -13.005 -19.915  1.00 54.00
ATOM     98  CA  GLY   108      10.075 -10.085 -21.520  1.00 29.00
ATOM     99  CA  GLU   109      12.554 -10.545 -24.395  1.00 70.00
ATOM    100  CA  LEU   110      14.510  -8.073 -26.381  1.00 72.00
ATOM    101  CA  ILE   111      13.712  -8.443 -30.103  1.00 99.00
ATOM    102  CA  SER   112      15.732  -5.575 -31.502  1.00 99.00
ATOM    103  CA  GLU   113      18.200  -3.230 -29.891  1.00 99.00
ATOM    104  CA  GLU   114      19.287  -0.221 -32.016  1.00 99.00
ATOM    105  CA  ASP   115      21.577   2.695 -31.051  1.00 99.00
ATOM    106  CA  MET   116      18.904   4.676 -29.218  1.00 99.00
ATOM    107  CA  LEU   117      15.893   2.404 -29.407  1.00 93.00
ATOM    108  CA  PHE   118      14.727  -1.166 -29.018  1.00 78.00
ATOM    109  CA  THR   119      11.716  -3.454 -29.301  1.00 47.00
ATOM    110  CA  VAL   120      10.765  -5.856 -26.506  1.00 19.00
ATOM    111  CA  ARG   121       8.031  -8.504 -26.528  1.00 19.00
ATOM    112  CA  GLY   122       6.293  -9.487 -23.327  1.00 11.00
ATOM    113  CA  ARG   123       3.892 -12.444 -22.956  1.00  9.00
ATOM    114  CA  ILE   124       1.815 -12.878 -19.757  1.00 13.00
ATOM    115  CA  TRP   125       0.505 -16.404 -19.151  1.00 13.00
ATOM    116  CA  ALA   126      -1.529 -17.951 -16.313  1.00 26.00
ATOM    118  CA  GLY   127      -2.459 -23.194 -16.770  1.00 53.00
ATOM    119  CA  GLU   128       0.129 -21.850 -19.174  1.00 74.00
ATOM    120  CA  ARG   129      -2.626 -20.080 -21.191  1.00 78.00
ATOM    121  CA  THR   130      -1.904 -16.632 -22.643  1.00 81.00
ATOM    122  CA  LEU   131      -3.466 -13.793 -20.888  1.00 81.00
ATOM    123  CA  ILE   132      -1.905 -10.887 -22.773  1.00 50.00
ATOM    124  CA  THR   133       0.786 -10.035 -25.458  1.00 41.00
ATOM    125  CA  GLY   134       2.751  -6.753 -25.427  1.00 25.00
ATOM    126  CA  THR   135       5.185  -5.391 -27.879  1.00 45.00
ATOM    127  CA  GLY   136       7.029  -2.283 -26.655  1.00 26.00
ATOM    128  CA  VAL   137       9.324   0.211 -28.394  1.00 39.00
ATOM    129  CA  PHE   138      11.919   1.517 -25.955  1.00 40.00
ATOM    130  CA  LYS   139      14.102   4.537 -25.723  1.00 40.00
ATOM    131  CA  ALA   140      17.787   4.691 -24.425  1.00 40.00
TER
END
