
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  155 (  155),  selected  148 , name T0321TS599_2-D2
# Molecule2: number of CA atoms  148 ( 1130),  selected  148 , name T0321_D2.pdb
# PARAMETERS: T0321TS599_2-D2.T0321_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44       208 - 251         4.85    29.37
  LCS_AVERAGE:     24.19

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27       155 - 181         1.81    33.00
  LCS_AVERAGE:     10.80

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       162 - 176         1.00    33.02
  LONGEST_CONTINUOUS_SEGMENT:    15       163 - 177         0.89    33.08
  LCS_AVERAGE:      5.50

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     V      97     V      97      3    5    6     3    3    4    4    5    7    7    7    8   11   13   16   20   23   25   29   33   36   40   45 
LCS_GDT     I      98     I      98      3    5    6     3    3    4    4    5    7    7    9    9   11   13   19   22   23   25   30   33   36   40   45 
LCS_GDT     F      99     F      99      3    5   24     3    3    4    4    5    7    7    9   10   13   14   19   22   24   30   33   34   38   43   45 
LCS_GDT     S     100     S     100      3    5   25     3    3    4    4    5    7    7   11   14   18   20   22   26   29   33   35   37   38   43   45 
LCS_GDT     D     101     D     101      4    5   25     3    3    4    4    5    7    8   17   18   21   24   25   29   31   33   35   37   38   43   45 
LCS_GDT     A     102     A     102      4    5   26     3    3    4    4    6   11   14   18   20   24   24   25   29   31   33   35   37   38   43   45 
LCS_GDT     N     110     N     110      4   20   29     3    3    4   10   16   18   21   22   23   28   34   38   39   42   42   44   46   48   50   52 
LCS_GDT     D     111     D     111      7   20   29     7    7    8   15   19   20   21   24   29   34   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     P     112     P     112      7   20   29     7    9   13   15   19   24   26   30   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     F     113     F     113      7   20   29     7    9   13   15   19   20   21   22   25   29   33   35   40   42   44   44   46   48   50   52 
LCS_GDT     I     114     I     114      7   20   29     7    8   13   15   19   20   21   22   23   24   29   32   35   36   38   40   44   47   49   52 
LCS_GDT     M     115     M     115      7   20   29     7    7   10   12   19   20   21   22   23   25   27   30   33   36   40   41   45   47   49   52 
LCS_GDT     S     116     S     116      7   20   29     7    7    8   12   19   20   21   22   23   24   27   28   32   34   38   40   42   45   48   49 
LCS_GDT     Q     117     Q     117      7   20   29     7    9   13   15   19   20   21   22   23   24   24   27   31   34   38   40   41   42   43   46 
LCS_GDT     N     118     N     118      5   20   29     5    8   10   15   19   20   21   22   23   24   24   27   30   34   38   40   41   42   43   46 
LCS_GDT     E     119     E     119      6   20   29     5    9   13   15   19   20   21   22   23   24   24   27   30   34   38   40   41   42   43   46 
LCS_GDT     V     120     V     120      6   20   29     5    5    7   12   12   20   21   22   23   24   24   27   30   34   38   40   41   42   43   46 
LCS_GDT     K     121     K     121      8   20   29     3    5    7   11   19   20   21   22   23   24   24   26   29   31   33   35   37   39   43   45 
LCS_GDT     G     122     G     122      8   20   29     3    8   13   15   19   20   21   22   23   24   24   26   29   31   33   35   37   38   43   45 
LCS_GDT     K     123     K     123      8   20   29     4    8   13   15   19   20   21   22   23   24   24   26   29   32   35   38   40   42   43   45 
LCS_GDT     K     124     K     124      8   20   29     6    9   13   15   19   20   21   22   23   24   24   26   30   32   35   39   40   42   43   45 
LCS_GDT     V     125     V     125      8   20   29     6    9   13   15   19   20   21   22   23   24   24   27   30   34   38   40   41   42   44   49 
LCS_GDT     G     126     G     126      8   20   29     6    9   13   15   19   20   21   22   23   25   26   32   34   38   43   44   46   47   49   52 
LCS_GDT     V     127     V     127      8   20   29     6    9   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     V     128     V     128      8   20   29     6    9   13   15   19   20   21   22   23   24   27   28   38   40   42   44   46   47   50   52 
LCS_GDT     G     129     G     129      8   20   29     6    7   13   15   19   20   21   22   23   24   27   28   31   34   38   40   41   42   46   50 
LCS_GDT     H     130     H     130      5   20   29     3    4   12   14   17   18   20   21   21   23   27   28   31   34   38   40   41   42   46   49 
LCS_GDT     F     131     F     131      5   19   29     3    4   12   14   17   18   19   21   21   23   27   28   31   34   38   40   41   42   44   47 
LCS_GDT     P     132     P     132      5   19   29     3    4    5   14   17   18   19   21   21   23   27   28   31   34   38   40   41   42   43   45 
LCS_GDT     H     133     H     133     10   19   29     6    6   12   14   17   18   19   21   21   23   27   28   31   34   38   40   41   43   47   50 
LCS_GDT     L     134     L     134     10   19   29     6    7   11   14   17   18   19   21   21   23   27   28   32   34   39   43   45   48   50   52 
LCS_GDT     E     135     E     135     10   19   29     6    6   11   14   17   18   19   21   21   23   27   28   32   35   39   43   45   48   50   52 
LCS_GDT     S     136     S     136     10   19   29     6    8   11   14   17   18   19   21   21   23   27   28   31   34   38   40   43   47   50   52 
LCS_GDT     L     137     L     137     10   19   29     6    7   12   14   17   18   19   21   21   23   27   28   32   34   39   43   44   48   50   52 
LCS_GDT     L     138     L     138     10   19   29     6    8   12   14   17   18   19   21   21   23   27   28   32   36   40   43   45   48   50   52 
LCS_GDT     E     139     E     139     10   19   29     4    8   12   14   17   18   19   21   21   23   27   28   31   34   38   41   44   47   50   52 
LCS_GDT     P     140     P     140     10   19   27     4    8   12   14   17   18   19   21   21   23   27   28   31   34   38   40   41   45   47   52 
LCS_GDT     I     141     I     141     10   19   27     4    8   12   14   17   18   19   21   21   23   27   28   31   34   38   40   41   46   49   52 
LCS_GDT     C     142     C     142     10   19   27     3    8   12   14   17   18   19   21   21   23   27   28   31   34   38   40   41   46   49   52 
LCS_GDT     D     143     D     143     10   19   27     3    8   12   14   17   18   19   21   21   23   27   28   31   34   38   40   41   45   48   52 
LCS_GDT     L     144     L     144     10   19   41     3   12   13   14   17   18   19   21   21   23   27   28   31   34   38   43   45   48   50   52 
LCS_GDT     S     145     S     145     10   19   41     4    6    9   11   13   18   19   19   22   24   27   28   31   34   40   43   46   48   50   52 
LCS_GDT     I     146     I     146      8   15   41     4    6    8   11   19   20   21   22   23   28   34   39   40   42   44   44   46   48   50   52 
LCS_GDT     L     147     L     147      8   14   41     4    6    8   11   12   19   27   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     E     148     E     148      8   14   41     4    6   10   16   20   26   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     W     149     W     149      5   14   41     3    4    6    9   12   15   15   16   21   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     S     150     S     150      4   12   41     3    4    5    9   10   12   15   16   20   28   35   38   40   42   44   44   46   48   50   52 
LCS_GDT     P     151     P     151      4    5   41     3    4    4    7    7    9   11   25   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     E     152     E     152      4    5   41     3    4    5    7    7   12   18   23   29   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     E     153     E     153      3    5   41     3    3    3    5    7    9   14   16   25   29   35   39   40   42   44   44   46   48   50   52 
LCS_GDT     G     154     G     154      4   25   41     3    4    4    5    9   17   24   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     D     155     D     155      6   27   41     3    7   12   18   23   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     Y     156     Y     156      6   27   41     6    9   15   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     P     157     P     157      6   27   41     6   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     L     158     L     158      6   27   41     6    8   11   19   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     P     159     P     159      7   27   41     6    8   11   20   23   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     A     160     A     160     12   27   41     6   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     S     161     S     161     12   27   41     4    9   16   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     E     162     E     162     15   27   41     4    6   12   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     F     163     F     163     15   27   41     4    9   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     I     164     I     164     15   27   41     6   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     L     165     L     165     15   27   41     6   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     P     166     P     166     15   27   41     5   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     E     167     E     167     15   27   41     6   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     C     168     C     168     15   27   41     6   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   47   49   52 
LCS_GDT     D     169     D     169     15   27   41     6   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   47   49   52 
LCS_GDT     Y     170     Y     170     15   27   41     6   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   47   49   52 
LCS_GDT     V     171     V     171     15   27   41     3   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     Y     172     Y     172     15   27   41     4   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     I     173     I     173     15   27   41     4   10   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     T     174     T     174     15   27   41     5   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     C     175     C     175     15   27   41     4   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     A     176     A     176     15   27   41     4   12   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     S     177     S     177     15   27   41     5   11   17   21   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     V     178     V     178      7   27   41     5    6    9   11   19   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     V     179     V     179      7   27   41     5    6    8   13   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     D     180     D     180      7   27   41     5    6   13   20   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     K     181     K     181     11   27   41     5    6   11   20   24   28   29   31   32   35   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     T     182     T     182     11   18   41     7   10   10   12   12   13   14   16   26   29   30   37   37   38   44   44   46   47   50   52 
LCS_GDT     L     183     L     183     11   13   41     9   10   10   12   12   13   14   14   18   22   32   37   40   42   44   44   46   48   50   52 
LCS_GDT     P     184     P     184     11   13   41     9   10   10   12   12   13   14   22   26   32   36   39   40   42   44   44   46   48   50   52 
LCS_GDT     R     185     R     185     11   13   41     9   10   10   12   12   13   14   14   18   24   32   37   39   41   44   44   46   48   50   52 
LCS_GDT     L     186     L     186     11   13   41     9   10   10   12   12   13   14   14   15   16   17   20   23   24   27   34   40   45   49   52 
LCS_GDT     L     187     L     187     11   13   34     9   10   10   12   12   13   14   14   15   16   17   19   23   30   36   42   45   48   50   52 
LCS_GDT     E     188     E     188     11   13   20     9   10   10   12   12   13   14   14   15   16   17   22   28   33   40   43   46   48   50   52 
LCS_GDT     L     189     L     189     11   13   20     9   10   10   12   12   13   14   14   15   16   17   20   23   24   27   29   34   42   44   48 
LCS_GDT     S     190     S     190     11   13   20     9   10   10   12   12   13   14   14   15   16   16   18   19   21   25   27   29   37   38   41 
LCS_GDT     R     191     R     191     11   13   20     9   10   10   12   12   13   14   14   15   16   16   18   19   20   26   29   34   39   44   47 
LCS_GDT     N     192     N     192      5   13   20     4    5    8   10   11   13   14   14   15   16   16   19   21   22   26   29   34   39   43   46 
LCS_GDT     A     193     A     193      5   13   20     4    5    8   10   11   12   14   14   15   17   20   22   24   26   26   27   28   32   36   41 
LCS_GDT     R     194     R     194      6   11   23     3    6    7    9   10   11   12   13   15   17   20   22   24   26   26   27   28   31   34   40 
LCS_GDT     R     195     R     195      6   11   23     3    6    8    9   10   10   12   12   13   17   20   22   24   26   28   33   38   44   48   52 
LCS_GDT     I     196     I     196      6   11   23     3    6    8    9   10   10   12   12   13   17   20   22   24   26   28   33   38   44   46   52 
LCS_GDT     T     197     T     197      6   11   23     3    6    8    9   10   10   12   13   17   21   28   33   38   41   45   47   49   50   52   53 
LCS_GDT     L     198     L     198      6   11   23     3    6    8    9   10   10   12   12   17   23   28   33   38   41   46   48   49   50   52   53 
LCS_GDT     V     199     V     199      6   11   23     3    6    8    9   10   12   18   22   25   30   33   38   42   42   46   48   49   50   52   53 
LCS_GDT     G     200     G     200      6   11   23     3    5    8    9   10   11   18   22   25   30   32   38   42   42   46   48   49   50   52   53 
LCS_GDT     P     201     P     201      3   11   23     3    4    8    9   10   10   12   12   13   17   20   27   31   35   37   43   47   49   52   53 
LCS_GDT     G     202     G     202      3   11   23     3    3    4    8   10   10   15   19   21   28   29   38   42   42   46   48   49   50   52   53 
LCS_GDT     T     203     T     203      3    5   23     3    3    4    5    5   10   12   15   16   21   23   26   29   35   37   40   45   48   51   53 
LCS_GDT     P     204     P     204      3    5   23     3    3    3    4    5    8   10   13   23   23   24   25   33   35   38   41   46   49   52   53 
LCS_GDT     L     205     L     205      3   11   23     3    3    3    4    4   10   12   20   23   23   24   25   29   33   37   40   46   48   52   53 
LCS_GDT     A     206     A     206      5   11   36     3    4    8   10   14   16   17   20   25   26   31   36   39   42   46   48   49   50   52   53 
LCS_GDT     P     207     P     207      7   11   43     4    4    8    9   11   11   13   19   23   24   27   32   37   42   44   48   49   50   52   53 
LCS_GDT     V     208     V     208      7   11   44     4    6    8    9   12   15   19   20   23   24   29   35   38   42   46   48   49   50   52   53 
LCS_GDT     L     209     L     209      7   11   44     4    6    9   12   14   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     F     210     F     210      7   11   44     4    6    9   11   14   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     E     211     E     211      7   11   44     4    6    9   12   14   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     H     212     H     212      7   11   44     4    6    9   12   14   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     G     213     G     213      7   11   44     3    6    8    9   11   15   17   21   25   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     L     214     L     214      7   11   44     3    5    8   12   14   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     Q     215     Q     215      6   11   44     4    5    8    8   10   15   17   19   21   30   32   37   42   42   46   48   49   50   52   53 
LCS_GDT     E     216     E     216      5    9   44     4    8    8   12   14   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     L     217     L     217      5    7   44     4    5    7    9   11   13   17   21   25   29   34   37   42   42   46   48   49   50   52   53 
LCS_GDT     S     218     S     218      5    9   44     4    5    6    7   10   12   17   21   25   29   31   36   41   42   46   48   49   50   52   53 
LCS_GDT     G     219     G     219      6    9   44     4    6    6    7    9   11   14   17   21   22   27   28   32   36   41   44   48   50   51   53 
LCS_GDT     F     220     F     220      6    9   44     3    6    6    7    9   12   15   18   21   26   31   33   38   42   45   48   49   50   52   53 
LCS_GDT     M     221     M     221      6   14   44     4    6    6    8   11   14   17   21   25   30   34   37   42   42   46   48   49   50   52   53 
LCS_GDT     V     222     V     222      6   14   44     4    6    6    7   10   12   17   21   25   29   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     K     223     K     223     12   14   44     4   12   13   13   14   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     D     224     D     224     12   14   44     8   12   13   13   14   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     N     225     N     225     12   14   44    10   12   13   13   14   16   19   22   25   29   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     A     226     A     226     12   14   44    10   12   13   13   14   16   19   22   25   29   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     R     227     R     227     12   14   44    10   12   13   13   14   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     A     228     A     228     12   14   44    10   12   13   13   14   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     F     229     F     229     12   14   44    10   12   13   13   14   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     R     230     R     230     12   14   44    10   12   13   13   14   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     I     231     I     231     12   14   44    10   12   13   13   14   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     V     232     V     232     12   14   44    10   12   13   13   14   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     A     233     A     233     12   14   44    10   12   13   13   14   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     G     234     G     234     12   14   44    10   12   13   13   14   15   19   22   26   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     A     235     A     235      4   14   44     3    3    4    9   13   15   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     E     236     E     236      4   14   44     3    4    7   11   13   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     K     237     K     237      4   14   44     3    4    6   11   13   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     V     238     V     238      4    8   44     0    3    5    8   12   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     K     239     K     239      5    8   44     3    4    6   11   13   16   19   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     I     240     I     240      5    8   44     4    5    5    7   14   15   17   20   23   26   34   37   42   42   46   48   49   50   52   53 
LCS_GDT     Y     241     Y     241      5    8   44     4    5    7    9   13   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     S     242     S     242      5    8   44     4    5    5   11   12   16   19   22   26   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     A     243     A     243      5    9   44     4    5    5    7   11   15   16   19   20   26   28   34   36   42   45   47   49   50   52   53 
LCS_GDT     G     244     G     244      5    9   44     4    5    5   12   14   15   18   22   25   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     Q     245     Q     245      7    9   44     3    8    9   12   14   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     K     246     K     246      7    9   44     3    8    9   12   14   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     V     247     V     247      7    9   44     3    8    9   12   14   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     T     248     T     248      7    9   44     4    8    9   12   14   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     I     249     I     249      7    9   44     4    8    9   12   14   16   18   23   27   30   34   38   42   42   46   48   49   50   52   53 
LCS_GDT     K     250     K     250      7    9   44     4    8    9   12   14   16   18   22   25   30   33   38   42   42   46   48   49   50   52   53 
LCS_GDT     K     251     K     251      7    9   44     4    8    8   12   14   16   18   22   27   30   33   38   42   42   46   48   49   50   52   53 
LCS_AVERAGE  LCS_A:  13.50  (   5.50   10.80   24.19 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     12     17     21     24     28     29     31     32     35     36     39     42     42     46     48     49     50     52     53 
GDT PERCENT_CA   6.76   8.11  11.49  14.19  16.22  18.92  19.59  20.95  21.62  23.65  24.32  26.35  28.38  28.38  31.08  32.43  33.11  33.78  35.14  35.81
GDT RMS_LOCAL    0.30   0.42   0.95   1.24   1.56   1.81   1.92   2.22   2.39   3.12   3.32   3.77   4.37   4.20   4.80   5.03   5.08   5.21   5.47   5.60
GDT RMS_ALL_CA  19.76  19.57  33.06  32.86  32.98  32.92  32.82  32.57  32.00  31.67  30.99  30.79  30.52  29.99  29.54  29.38  29.58  29.40  29.55  29.73

#      Molecule1      Molecule2       DISTANCE
LGA    V      97      V      97         31.173
LGA    I      98      I      98         31.312
LGA    F      99      F      99         32.062
LGA    S     100      S     100         34.817
LGA    D     101      D     101         33.592
LGA    A     102      A     102         35.440
LGA    N     110      N     110         12.410
LGA    D     111      D     111          9.575
LGA    P     112      P     112          4.912
LGA    F     113      F     113         10.640
LGA    I     114      I     114         15.598
LGA    M     115      M     115         12.816
LGA    S     116      S     116         14.434
LGA    Q     117      Q     117         20.471
LGA    N     118      N     118         24.738
LGA    E     119      E     119         23.827
LGA    V     120      V     120         23.956
LGA    K     121      K     121         29.792
LGA    G     122      G     122         30.222
LGA    K     123      K     123         24.853
LGA    K     124      K     124         19.812
LGA    V     125      V     125         12.812
LGA    G     126      G     126          7.461
LGA    V     127      V     127          0.758
LGA    V     128      V     128          8.132
LGA    G     129      G     129         12.970
LGA    H     130      H     130         17.581
LGA    F     131      F     131         19.204
LGA    P     132      P     132         24.054
LGA    H     133      H     133         24.376
LGA    L     134      L     134         17.710
LGA    E     135      E     135         18.090
LGA    S     136      S     136         23.810
LGA    L     137      L     137         21.570
LGA    L     138      L     138         17.220
LGA    E     139      E     139         20.845
LGA    P     140      P     140         26.423
LGA    I     141      I     141         23.955
LGA    C     142      C     142         20.375
LGA    D     143      D     143         19.515
LGA    L     144      L     144         14.489
LGA    S     145      S     145         11.374
LGA    I     146      I     146          6.727
LGA    L     147      L     147          3.777
LGA    E     148      E     148          3.431
LGA    W     149      W     149          8.117
LGA    S     150      S     150         10.139
LGA    P     151      P     151          7.618
LGA    E     152      E     152          8.450
LGA    E     153      E     153          9.304
LGA    G     154      G     154          3.891
LGA    D     155      D     155          1.930
LGA    Y     156      Y     156          1.235
LGA    P     157      P     157          2.018
LGA    L     158      L     158          3.203
LGA    P     159      P     159          3.630
LGA    A     160      A     160          2.805
LGA    S     161      S     161          3.284
LGA    E     162      E     162          2.502
LGA    F     163      F     163          1.226
LGA    I     164      I     164          1.535
LGA    L     165      L     165          1.209
LGA    P     166      P     166          1.475
LGA    E     167      E     167          1.202
LGA    C     168      C     168          1.570
LGA    D     169      D     169          2.159
LGA    Y     170      Y     170          2.281
LGA    V     171      V     171          1.076
LGA    Y     172      Y     172          2.272
LGA    I     173      I     173          0.789
LGA    T     174      T     174          2.024
LGA    C     175      C     175          2.946
LGA    A     176      A     176          1.822
LGA    S     177      S     177          2.062
LGA    V     178      V     178          3.863
LGA    V     179      V     179          3.567
LGA    D     180      D     180          2.869
LGA    K     181      K     181          3.052
LGA    T     182      T     182          6.858
LGA    L     183      L     183          7.739
LGA    P     184      P     184          7.093
LGA    R     185      R     185          8.263
LGA    L     186      L     186         14.163
LGA    L     187      L     187         15.923
LGA    E     188      E     188         15.036
LGA    L     189      L     189         18.752
LGA    S     190      S     190         23.794
LGA    R     191      R     191         24.258
LGA    N     192      N     192         26.745
LGA    A     193      A     193         30.508
LGA    R     194      R     194         34.599
LGA    R     195      R     195         33.644
LGA    I     196      I     196         32.137
LGA    T     197      T     197         35.642
LGA    L     198      L     198         35.797
LGA    V     199      V     199         42.774
LGA    G     200      G     200         46.238
LGA    P     201      P     201         50.822
LGA    G     202      G     202         47.999
LGA    T     203      T     203         47.859
LGA    P     204      P     204         43.769
LGA    L     205      L     205         40.087
LGA    A     206      A     206         38.208
LGA    P     207      P     207         39.129
LGA    V     208      V     208         33.779
LGA    L     209      L     209         34.347
LGA    F     210      F     210         37.807
LGA    E     211      E     211         35.708
LGA    H     212      H     212         34.843
LGA    G     213      G     213         38.264
LGA    L     214      L     214         37.563
LGA    Q     215      Q     215         39.110
LGA    E     216      E     216         40.558
LGA    L     217      L     217         38.493
LGA    S     218      S     218         40.322
LGA    G     219      G     219         40.239
LGA    F     220      F     220         44.248
LGA    M     221      M     221         46.138
LGA    V     222      V     222         50.503
LGA    K     223      K     223         53.933
LGA    D     224      D     224         59.178
LGA    N     225      N     225         57.274
LGA    A     226      A     226         63.326
LGA    R     227      R     227         61.638
LGA    A     228      A     228         55.449
LGA    F     229      F     229         58.530
LGA    R     230      R     230         63.288
LGA    I     231      I     231         58.195
LGA    V     232      V     232         54.719
LGA    A     233      A     233         61.030
LGA    G     234      G     234         62.707
LGA    A     235      A     235         62.298
LGA    E     236      E     236         59.530
LGA    K     237      K     237         55.480
LGA    V     238      V     238         52.542
LGA    K     239      K     239         45.554
LGA    I     240      I     240         45.358
LGA    Y     241      Y     241         48.126
LGA    S     242      S     242         49.486
LGA    A     243      A     243         45.943
LGA    G     244      G     244         47.430
LGA    Q     245      Q     245         48.136
LGA    K     246      K     246         45.075
LGA    V     247      V     247         45.676
LGA    T     248      T     248         44.266
LGA    I     249      I     249         43.188
LGA    K     250      K     250         44.660
LGA    K     251      K     251         43.010

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  155  148    4.0     31    2.22    18.919    17.361     1.335

LGA_LOCAL      RMSD =  2.222  Number of atoms =   31  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 32.284  Number of atoms =  148 
Std_ALL_ATOMS  RMSD = 18.846  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.128968 * X  +   0.016017 * Y  +  -0.991519 * Z  +  -4.763180
  Y_new =   0.475327 * X  +   0.878519 * Y  +  -0.047634 * Z  +  26.139263
  Z_new =   0.870306 * X  +  -0.477439 * Y  +  -0.120914 * Z  +  59.613312 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.818836    1.322756  [ DEG:  -104.2116     75.7884 ]
  Theta =  -1.055822   -2.085770  [ DEG:   -60.4942   -119.5058 ]
  Phi   =   1.835742   -1.305851  [ DEG:   105.1803    -74.8197 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0321TS599_2-D2                               
REMARK     2: T0321_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0321TS599_2-D2.T0321_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  155  148   4.0   31   2.22  17.361    18.85
REMARK  ---------------------------------------------------------- 
MOLECULE T0321TS599_2-D2
PFRMAT TS                                                                       
TARGET T0321                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM     97  CA  VAL    97       2.236  13.840  70.942  1.00  0.00              
ATOM     98  CA  ILE    98      -1.229  16.055  70.449  1.00  0.00              
ATOM     99  CA  PHE    99      -1.565  19.140  70.517  1.00  0.00              
ATOM    100  CA  SER   100      -5.272  20.048  71.303  1.00  0.00              
ATOM    101  CA  ASP   101      -5.040  23.668  72.355  1.00  0.00              
ATOM    102  CA  ALA   102      -1.640  23.753  74.033  1.00  0.00              
ATOM    103  CA  LYS   103      -0.034  26.845  72.520  1.00  0.00              
ATOM    104  CA  ARG   104       2.629  27.829  75.010  1.00  0.00              
ATOM    105  CA  VAL   105       2.026  31.219  76.630  1.00  0.00              
ATOM    106  CA  GLU   106       5.593  32.497  77.209  1.00  0.00              
ATOM    107  CA  ASP   107       5.199  35.594  79.335  1.00  0.00              
ATOM    108  CA  ARG   108       8.181  37.595  77.966  1.00  0.00              
ATOM    109  CA  MET   109       7.416  37.466  74.248  1.00  0.00              
ATOM    110  CA  ASN   110       3.717  38.127  73.910  1.00  0.00              
ATOM    111  CA  ASP   111       3.625  41.446  75.771  1.00  0.00              
ATOM    112  CA  PRO   112       6.513  42.782  73.626  1.00  0.00              
ATOM    113  CA  PHE   113       4.952  41.832  70.404  1.00  0.00              
ATOM    114  CA  ILE   114       1.607  43.318  71.171  1.00  0.00              
ATOM    115  CA  MET   115       3.174  46.678  72.375  1.00  0.00              
ATOM    116  CA  SER   116       4.999  46.852  69.035  1.00  0.00              
ATOM    117  CA  GLN   117       1.693  46.272  67.169  1.00  0.00              
ATOM    118  CA  ASN   118      -0.273  48.889  69.177  1.00  0.00              
ATOM    119  CA  GLU   119       2.203  51.694  68.375  1.00  0.00              
ATOM    120  CA  VAL   120       2.147  50.902  64.728  1.00  0.00              
ATOM    121  CA  LYS   121       2.029  53.759  62.265  1.00  0.00              
ATOM    122  CA  GLY   122       5.333  54.400  60.690  1.00  0.00              
ATOM    123  CA  LYS   123       7.649  53.210  63.392  1.00  0.00              
ATOM    124  CA  LYS   124      11.005  51.654  62.544  1.00  0.00              
ATOM    125  CA  VAL   125      11.417  48.348  64.211  1.00  0.00              
ATOM    126  CA  GLY   126      14.753  46.790  64.872  1.00  0.00              
ATOM    127  CA  VAL   127      15.025  43.048  65.234  1.00  0.00              
ATOM    128  CA  VAL   128      18.027  41.512  67.013  1.00  0.00              
ATOM    129  CA  GLY   129      18.607  37.893  66.417  1.00  0.00              
ATOM    130  CA  HIS   130      20.232  36.039  69.262  1.00  0.00              
ATOM    131  CA  PHE   131      19.197  33.432  71.787  1.00  0.00              
ATOM    132  CA  PRO   132      18.272  30.181  69.987  1.00  0.00              
ATOM    133  CA  HIS   133      15.704  28.997  72.553  1.00  0.00              
ATOM    134  CA  LEU   134      14.097  32.424  72.529  1.00  0.00              
ATOM    135  CA  GLU   135      13.829  32.635  68.780  1.00  0.00              
ATOM    136  CA  SER   136      12.360  29.268  68.389  1.00  0.00              
ATOM    137  CA  LEU   137       9.620  29.857  70.930  1.00  0.00              
ATOM    138  CA  LEU   138       8.833  33.165  69.367  1.00  0.00              
ATOM    139  CA  GLU   139       8.572  31.691  65.840  1.00  0.00              
ATOM    140  CA  PRO   140       5.963  29.218  66.951  1.00  0.00              
ATOM    141  CA  ILE   141       3.810  31.765  68.629  1.00  0.00              
ATOM    142  CA  CYS   142       4.436  34.865  66.834  1.00  0.00              
ATOM    143  CA  ASP   143       5.276  36.257  63.340  1.00  0.00              
ATOM    144  CA  LEU   144       8.186  37.649  63.428  1.00  0.00              
ATOM    145  CA  SER   145       9.314  40.919  61.023  1.00  0.00              
ATOM    146  CA  ILE   146      12.356  42.149  60.979  1.00  0.00              
ATOM    147  CA  LEU   147      12.923  46.313  60.158  1.00  0.00              
ATOM    148  CA  GLU   148      16.004  47.907  60.725  1.00  0.00              
ATOM    149  CA  TRP   149      16.286  51.522  61.458  1.00  0.00              
ATOM    150  CA  SER   150      19.255  51.602  63.640  1.00  0.00              
ATOM    151  CA  PRO   151      22.788  51.461  62.307  1.00  0.00              
ATOM    152  CA  GLU   152      24.015  49.059  65.014  1.00  0.00              
ATOM    153  CA  GLU   153      21.579  46.252  64.360  1.00  0.00              
ATOM    154  CA  GLY   154      22.169  46.161  60.614  1.00  0.00              
ATOM    155  CA  ASP   155      19.585  47.936  58.624  1.00  0.00              
ATOM    156  CA  TYR   156      18.922  45.732  55.666  1.00  0.00              
ATOM    157  CA  PRO   157      18.330  45.267  52.171  1.00  0.00              
ATOM    158  CA  LEU   158      15.432  42.756  51.720  1.00  0.00              
ATOM    159  CA  PRO   159      17.400  39.759  50.556  1.00  0.00              
ATOM    160  CA  ALA   160      19.900  39.883  53.428  1.00  0.00              
ATOM    161  CA  SER   161      17.157  40.442  55.981  1.00  0.00              
ATOM    162  CA  GLU   162      15.260  37.442  55.095  1.00  0.00              
ATOM    163  CA  PHE   163      18.371  35.311  55.374  1.00  0.00              
ATOM    164  CA  ILE   164      19.116  36.917  58.740  1.00  0.00              
ATOM    165  CA  LEU   165      15.773  36.320  60.056  1.00  0.00              
ATOM    166  CA  PRO   166      15.785  32.648  59.256  1.00  0.00              
ATOM    167  CA  GLU   167      19.069  32.227  61.136  1.00  0.00              
ATOM    168  CA  CYS   168      18.339  34.301  64.082  1.00  0.00              
ATOM    169  CA  ASP   169      17.869  33.850  67.730  1.00  0.00              
ATOM    170  CA  TYR   170      15.910  37.178  68.243  1.00  0.00              
ATOM    171  CA  VAL   171      13.041  38.601  65.795  1.00  0.00              
ATOM    172  CA  TYR   172      12.577  42.272  65.668  1.00  0.00              
ATOM    173  CA  ILE   173       9.228  43.687  64.849  1.00  0.00              
ATOM    174  CA  THR   174       9.229  47.170  63.333  1.00  0.00              
ATOM    175  CA  CYS   175       5.647  48.879  63.180  1.00  0.00              
ATOM    176  CA  ALA   176       4.993  48.949  59.509  1.00  0.00              
ATOM    177  CA  SER   177       6.335  45.481  59.113  1.00  0.00              
ATOM    178  CA  VAL   178       3.863  43.838  61.626  1.00  0.00              
ATOM    179  CA  VAL   179       0.762  45.699  60.387  1.00  0.00              
ATOM    180  CA  ASP   180       1.393  45.131  56.679  1.00  0.00              
ATOM    181  CA  LYS   181       2.061  41.458  56.917  1.00  0.00              
ATOM    182  CA  THR   182      -1.047  40.683  58.962  1.00  0.00              
ATOM    183  CA  LEU   183      -3.619  42.591  56.899  1.00  0.00              
ATOM    184  CA  PRO   184      -2.324  41.079  53.640  1.00  0.00              
ATOM    185  CA  ARG   185      -2.828  37.526  54.907  1.00  0.00              
ATOM    186  CA  LEU   186      -6.338  38.267  56.001  1.00  0.00              
ATOM    187  CA  LEU   187      -7.268  39.912  52.769  1.00  0.00              
ATOM    188  CA  GLU   188      -6.004  36.842  50.935  1.00  0.00              
ATOM    189  CA  LEU   189      -8.107  34.674  53.138  1.00  0.00              
ATOM    190  CA  SER   190     -11.263  36.777  52.424  1.00  0.00              
ATOM    191  CA  ARG   191     -10.605  36.666  48.691  1.00  0.00              
ATOM    192  CA  ASN   192     -10.310  32.819  48.738  1.00  0.00              
ATOM    193  CA  ALA   193     -13.618  32.263  50.515  1.00  0.00              
ATOM    194  CA  ARG   194     -15.007  30.198  48.654  1.00  0.00              
ATOM    195  CA  ARG   195     -16.681  27.103  51.032  1.00  0.00              
ATOM    196  CA  ILE   196     -15.740  24.128  50.927  1.00  0.00              
ATOM    197  CA  THR   197     -17.901  21.126  52.798  1.00  0.00              
ATOM    198  CA  LEU   198     -16.610  18.227  53.550  1.00  0.00              
ATOM    199  CA  VAL   199     -18.851  14.893  54.302  1.00  0.00              
ATOM    200  CA  GLY   200     -17.556  12.014  55.210  1.00  0.00              
ATOM    201  CA  PRO   201     -19.796   8.620  55.895  1.00  0.00              
ATOM    202  CA  GLY   202     -18.295   7.092  58.870  1.00  0.00              
ATOM    203  CA  THR   203     -21.293   5.252  60.077  1.00  0.00              
ATOM    204  CA  PRO   204     -23.019   7.283  62.743  1.00  0.00              
ATOM    205  CA  LEU   205     -22.469  10.793  61.633  1.00  0.00              
ATOM    206  CA  ALA   206     -23.401  10.410  58.107  1.00  0.00              
ATOM    207  CA  PRO   207     -26.795   8.911  58.823  1.00  0.00              
ATOM    208  CA  VAL   208     -27.502  11.624  61.151  1.00  0.00              
ATOM    209  CA  LEU   209     -26.589  14.276  58.653  1.00  0.00              
ATOM    210  CA  PHE   210     -28.711  12.816  56.052  1.00  0.00              
ATOM    211  CA  GLU   211     -31.476  12.654  58.140  1.00  0.00              
ATOM    212  CA  HIS   212     -31.375  16.267  58.919  1.00  0.00              
ATOM    213  CA  GLY   213     -31.272  17.063  55.264  1.00  0.00              
ATOM    214  CA  LEU   214     -27.855  18.535  55.057  1.00  0.00              
ATOM    215  CA  GLN   215     -25.411  17.935  52.399  1.00  0.00              
ATOM    216  CA  GLU   216     -25.017  21.403  50.825  1.00  0.00              
ATOM    217  CA  LEU   217     -21.691  22.532  49.790  1.00  0.00              
ATOM    218  CA  SER   218     -21.354  26.149  49.021  1.00  0.00              
ATOM    219  CA  GLY   219     -18.368  26.285  46.386  1.00  0.00              
ATOM    220  CA  PHE   220     -17.597  23.027  46.134  1.00  0.00              
ATOM    221  CA  MET   221     -13.934  21.151  44.922  1.00  0.00              
ATOM    222  CA  VAL   222     -13.737  18.111  44.485  1.00  0.00              
ATOM    223  CA  LYS   223     -10.436  16.362  45.281  1.00  0.00              
ATOM    224  CA  ASP   224     -10.043  12.724  44.691  1.00  0.00              
ATOM    225  CA  ASN   225     -10.576  10.763  47.935  1.00  0.00              
ATOM    226  CA  ALA   226      -8.391   7.934  46.715  1.00  0.00              
ATOM    227  CA  ARG   227      -5.557  10.309  46.370  1.00  0.00              
ATOM    228  CA  ALA   228      -6.103  11.505  49.807  1.00  0.00              
ATOM    229  CA  PHE   229      -5.953   8.463  51.123  1.00  0.00              
ATOM    230  CA  ARG   230      -3.087   7.372  49.688  1.00  0.00              
ATOM    231  CA  ILE   231      -1.167  10.413  50.561  1.00  0.00              
ATOM    232  CA  VAL   232      -2.153  10.130  54.196  1.00  0.00              
ATOM    233  CA  ALA   233      -1.049   6.580  54.237  1.00  0.00              
ATOM    234  CA  GLY   234       2.375   6.953  52.852  1.00  0.00              
ATOM    235  CA  ALA   235       3.432  10.014  54.829  1.00  0.00              
ATOM    236  CA  GLU   236       2.223  12.680  52.520  1.00  0.00              
ATOM    237  CA  LYS   237       1.421  15.661  54.614  1.00  0.00              
ATOM    238  CA  VAL   238      -2.074  16.375  55.871  1.00  0.00              
ATOM    239  CA  LYS   239      -1.739  20.171  55.332  1.00  0.00              
ATOM    240  CA  ILE   240      -1.068  19.655  51.591  1.00  0.00              
ATOM    241  CA  TYR   241      -3.977  17.356  50.927  1.00  0.00              
ATOM    242  CA  SER   242      -6.574  19.383  52.906  1.00  0.00              
ATOM    243  CA  ALA   243      -5.721  22.733  51.265  1.00  0.00              
ATOM    244  CA  GLY   244      -6.001  21.347  47.746  1.00  0.00              
ATOM    245  CA  GLN   245      -9.028  19.098  48.130  1.00  0.00              
ATOM    246  CA  LYS   246     -12.400  20.157  49.229  1.00  0.00              
ATOM    247  CA  VAL   247     -15.286  17.255  49.033  1.00  0.00              
ATOM    248  CA  THR   248     -18.788  18.865  48.526  1.00  0.00              
ATOM    249  CA  ILE   249     -21.631  16.859  49.685  1.00  0.00              
ATOM    250  CA  LYS   250     -24.847  17.579  47.971  1.00  0.00              
ATOM    251  CA  LYS   251     -28.371  16.782  49.690  1.00  0.00              
TER                                                                             
END
