
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  155 (  155),  selected  148 , name T0321TS168_4-D2
# Molecule2: number of CA atoms  148 ( 1130),  selected  148 , name T0321_D2.pdb
# PARAMETERS: T0321TS168_4-D2.T0321_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    47       157 - 203         4.99    19.99
  LCS_AVERAGE:     20.77

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       179 - 192         1.90    18.53
  LONGEST_CONTINUOUS_SEGMENT:    14       180 - 193         1.86    18.76
  LONGEST_CONTINUOUS_SEGMENT:    14       215 - 228         1.83    20.77
  LONGEST_CONTINUOUS_SEGMENT:    14       216 - 229         1.96    20.87
  LCS_AVERAGE:      5.78

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    10       181 - 190         0.89    18.28
  LONGEST_CONTINUOUS_SEGMENT:    10       182 - 191         0.89    18.55
  LONGEST_CONTINUOUS_SEGMENT:    10       225 - 234         0.25    20.07
  LCS_AVERAGE:      3.60

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  148
LCS_GDT     V      97     V      97      3    5    6     0    3    3    4    5    5    8    8   14   17   23   25   28   30   37   42   47   52   54   56 
LCS_GDT     I      98     I      98      3    5   14     1    3    4    4    5    6    7    8   13   14   15   16   21   29   37   40   47   52   54   56 
LCS_GDT     F      99     F      99      3    5   14     1    3    4    5    6    6   10   13   13   14   16   18   22   27   36   40   45   52   54   56 
LCS_GDT     S     100     S     100      3    5   14     3    3    4    4    5    6    7   13   13   17   19   21   25   33   36   42   45   49   51   54 
LCS_GDT     D     101     D     101      3    5   14     3    3    4    4    5    6    6    6   11   12   12   12   13   21   22   24   31   33   34   53 
LCS_GDT     A     102     A     102      3    4   14     3    3    3    3    5    6    6    8   11   12   12   12   16   21   22   24   24   29   31   39 
LCS_GDT     N     110     N     110      3    6   17     3    3    3    4    5    7    9   12   15   18   22   28   30   34   37   42   45   49   52   54 
LCS_GDT     D     111     D     111      5    6   17     4    4    6    6    6    8   12   14   16   18   21   25   29   34   37   40   44   47   52   53 
LCS_GDT     P     112     P     112      5    6   17     4    4    6    6    6    8   12   14   16   18   20   21   26   31   32   39   42   45   52   53 
LCS_GDT     F     113     F     113      5    6   17     4    4    6    6    7    8   12   14   16   18   20   21   26   31   32   39   42   45   52   53 
LCS_GDT     I     114     I     114      5    6   17     4    4    6    6    6    8   12   14   16   18   21   25   29   34   37   41   45   49   52   53 
LCS_GDT     M     115     M     115      5    6   17     1    4    6    6    7    8   12   14   16   18   20   25   29   34   37   40   45   49   52   53 
LCS_GDT     S     116     S     116      3    5   17     3    3    4    4    4    7    8    8   11   12   14   21   22   25   26   35   38   42   51   53 
LCS_GDT     Q     117     Q     117      3    5   17     3    3    4    4    6    7    8    8   11   12   17   21   22   26   32   39   42   45   52   53 
LCS_GDT     N     118     N     118      3    5   17     3    3    6    6    6    8   12   14   17   18   22   28   30   34   37   42   47   52   54   56 
LCS_GDT     E     119     E     119      3    5   17     3    3    3    6    6    8   12   14   17   20   23   28   30   34   37   42   47   52   54   60 
LCS_GDT     V     120     V     120      3    4   20     3    3    3    4    6    8    9   14   16   19   23   28   30   34   37   43   47   52   65   69 
LCS_GDT     K     121     K     121      3    4   22     3    3    4    5    6    8   12   14   18   24   28   34   36   43   52   56   59   62   66   71 
LCS_GDT     G     122     G     122      3    4   22     3    4    4    4    7   10   16   18   22   25   30   35   42   47   52   56   59   62   67   71 
LCS_GDT     K     123     K     123      3    5   22     3    4    4    7   11   14   18   20   24   30   34   37   44   48   52   56   59   63   67   71 
LCS_GDT     K     124     K     124      3    5   22     3    4    5    5    8   10   18   20   23   26   30   35   42   47   52   56   59   63   67   71 
LCS_GDT     V     125     V     125      3    5   22     3    3    5    6    8    9   13   18   23   26   30   35   42   47   52   56   59   63   67   71 
LCS_GDT     G     126     G     126      3    6   22     3    4    5    7    7    9   11   18   21   23   26   33   34   37   41   45   52   60   65   71 
LCS_GDT     V     127     V     127      4    6   22     3    3    4    7    8   10   12   16   19   23   24   30   32   36   40   44   49   52   57   60 
LCS_GDT     V     128     V     128      4    6   22     3    4    4    7    8   10   12   16   19   23   24   28   30   35   38   42   47   52   54   56 
LCS_GDT     G     129     G     129      4    6   22     3    4    4    7    8   10   12   16   19   23   24   28   30   35   38   42   47   52   54   56 
LCS_GDT     H     130     H     130      4    6   22     3    3    4   11   11   11   12   15   19   23   24   28   30   35   38   42   47   52   54   56 
LCS_GDT     F     131     F     131      3    6   22     3    3    4    7    8   10   12   16   19   23   24   28   30   35   38   42   47   52   54   56 
LCS_GDT     P     132     P     132      3    7   22     3    3    3    6    7   10   13   16   19   23   24   26   30   35   38   42   45   49   52   54 
LCS_GDT     H     133     H     133      6    7   22     4    6    6    6    7    8   13   16   19   23   24   26   30   35   38   42   47   53   60   62 
LCS_GDT     L     134     L     134      6    7   22     4    6    6    6    7    8   12   16   19   23   24   28   30   37   42   47   53   56   62   66 
LCS_GDT     E     135     E     135      6    7   22     4    6    6    6    8   10   12   16   19   23   24   28   30   37   42   47   53   56   62   66 
LCS_GDT     S     136     S     136      6    7   22     4    6    6    7    8   10   12   16   19   23   24   28   30   35   40   47   53   56   62   66 
LCS_GDT     L     137     L     137      6    7   22     4    6    6    7    8   10   13   16   19   23   24   28   30   35   39   44   53   56   62   66 
LCS_GDT     L     138     L     138      6    7   22     4    6    6    7    8   10   12   16   19   23   24   28   32   37   43   53   57   62   66   71 
LCS_GDT     E     139     E     139      4    7   22     4    4    4    5    5    8   10   16   19   23   24   28   32   38   43   50   55   59   66   71 
LCS_GDT     P     140     P     140      4    8   22     4    6    8   11   13   15   18   19   21   23   26   31   37   43   52   56   59   62   66   71 
LCS_GDT     I     141     I     141      5   10   22     3    4    7   11   13   15   16   19   22   25   30   37   42   48   52   56   59   63   67   71 
LCS_GDT     C     142     C     142      5   10   22     3    6    9   10   13   14   18   24   27   33   36   39   45   49   53   56   59   63   67   71 
LCS_GDT     D     143     D     143      5   10   21     3    3    5    7    9   14   16   24   29   34   38   41   45   49   53   56   59   63   67   71 
LCS_GDT     L     144     L     144      6   10   21     4    6    9   10   13   16   19   24   29   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     S     145     S     145      6   10   21     4    6    9   10   13   16   19   24   29   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     I     146     I     146      6   10   21     4    4    7    9   12   14   18   24   29   34   38   42   46   49   53   56   59   63   67   71 
LCS_GDT     L     147     L     147      6   10   21     4    4    7    9   12   16   18   24   29   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     E     148     E     148      6   10   21     4    4    7    9   12   16   19   24   29   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     W     149     W     149      6   10   22     4    4    7    9   12   16   17   23   29   34   39   42   46   49   53   56   59   63   67   70 
LCS_GDT     S     150     S     150      4   10   22     3    3    4    8   10   16   17   20   24   29   33   41   45   48   52   54   58   62   66   70 
LCS_GDT     P     151     P     151      4    4   22     3    3    4    4    4    6    9   13   16   23   24   35   41   42   47   52   56   57   60   65 
LCS_GDT     E     152     E     152      4    4   22     3    3    4    5    6    7   11   15   18   23   24   35   41   44   47   52   56   57   60   61 
LCS_GDT     E     153     E     153      4    7   22     3    3    4    5    8   12   14   15   18   21   23   27   31   35   41   46   52   55   59   61 
LCS_GDT     G     154     G     154      4    8   24     3    3    4    5    7   12   14   15   18   21   23   25   27   31   36   44   48   52   59   61 
LCS_GDT     D     155     D     155      3    8   35     3    3    4    5    8   12   14   15   17   21   23   27   31   37   40   48   53   55   59   61 
LCS_GDT     Y     156     Y     156      3    8   46     0    3    4    5    8   12   14   15   18   21   23   29   41   42   48   53   56   57   60   65 
LCS_GDT     P     157     P     157      3    8   47     1    3    6    7    8   12   16   21   26   33   36   41   45   48   52   54   56   62   65   69 
LCS_GDT     L     158     L     158      4    8   47     4    4    5    7   12   16   18   23   30   34   39   42   46   49   53   56   59   63   67   70 
LCS_GDT     P     159     P     159      6    8   47     4    4    6    9   13   16   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     A     160     A     160      6    8   47     5    6    9   10   15   17   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     S     161     S     161      6    8   47     5    6    9   10   13   16   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     E     162     E     162      6    7   47     5    5    9   10   13   17   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     F     163     F     163      6    7   47     5    5    9   10   13   16   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     I     164     I     164      6    7   47     5    5    8   10   13   16   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     L     165     L     165      3    6   47     3    3    8   13   15   17   19   23   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     P     166     P     166      3    5   47     1    3    5    6    8   11   13   23   30   33   39   42   46   49   53   55   58   63   67   71 
LCS_GDT     E     167     E     167      3    5   47     0    3    3    6    8   16   17   23   30   34   39   42   46   49   53   55   59   63   67   71 
LCS_GDT     C     168     C     168      3    6   47     1    3    4    6    8   13   19   24   29   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     D     169     D     169      5    7   47     2    4    6    8   12   16   17   23   30   34   39   42   46   49   53   55   58   63   67   70 
LCS_GDT     Y     170     Y     170      5    7   47     2    4    6    7   12   16   17   23   30   34   39   42   46   49   53   55   58   63   67   70 
LCS_GDT     V     171     V     171      5    7   47     3    3    6    8   12   16   17   23   30   34   39   42   46   49   53   55   58   63   67   70 
LCS_GDT     Y     172     Y     172      5    7   47     3    4    6    8   12   16   17   23   29   33   38   42   46   49   52   54   58   63   67   70 
LCS_GDT     I     173     I     173      5    7   47     3    4    6    8   12   16   17   23   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     T     174     T     174      3    7   47     3    3    5    7   13   14   18   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     C     175     C     175      7    7   47     4    6    7    8   13   16   18   23   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     A     176     A     176      7    7   47     6    6    8    9   11   14   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     S     177     S     177      7    7   47     6    6    7    8    9   14   16   23   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     V     178     V     178      7    7   47     6    6    7    8   11   14   18   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     V     179     V     179      7   14   47     6    6    7    8    9   17   19   21   22   27   34   39   42   49   53   56   59   63   67   71 
LCS_GDT     D     180     D     180      7   14   47     6    6    7    8    9   13   18   23   26   27   33   40   44   48   52   54   58   63   67   70 
LCS_GDT     K     181     K     181     10   14   47     6    6   10   13   15   17   19   23   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     T     182     T     182     10   14   47     5    9   10   13   15   17   19   23   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     L     183     L     183     10   14   47     8    9   10   13   15   17   19   23   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     P     184     P     184     10   14   47     8    9   10   13   15   17   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     R     185     R     185     10   14   47     8    9   10   13   15   17   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     L     186     L     186     10   14   47     8    9   10   13   15   17   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     L     187     L     187     10   14   47     8    9   10   13   15   17   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     E     188     E     188     10   14   47     8    9   10   13   15   17   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     L     189     L     189     10   14   47     8    9   10   13   15   17   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     S     190     S     190     10   14   47     8    9   10   13   15   17   19   24   29   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     R     191     R     191     10   14   47     3    4    9   13   15   17   19   23   28   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     N     192     N     192      4   14   47     3    4    8   13   15   17   19   23   28   34   39   42   46   49   53   55   59   63   67   71 
LCS_GDT     A     193     A     193      4   14   47     0    4    6   12   15   17   19   23   27   33   38   42   46   49   53   55   59   63   67   71 
LCS_GDT     R     194     R     194      5    8   47     3    4    6    8    8   10   12   17   23   29   34   41   43   48   53   55   59   63   67   71 
LCS_GDT     R     195     R     195      5    8   47     3    4    6    8    8   11   14   17   25   29   36   41   43   48   52   54   58   63   67   71 
LCS_GDT     I     196     I     196      5    8   47     3    5    6    8    8   11   16   23   28   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     T     197     T     197      5    8   47     3    5    6    8    8   11   14   19   27   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     L     198     L     198      5    8   47     3    5    6    8    8   13   18   23   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     V     199     V     199      5    8   47     3    5    9   10   13   14   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     G     200     G     200      5    8   47     3    6    9   10   13   14   19   24   30   34   39   42   46   49   53   56   59   63   67   71 
LCS_GDT     P     201     P     201      4    8   47     3    4    5    7   11   14   18   23   27   33   38   42   46   49   53   56   59   63   67   71 
LCS_GDT     G     202     G     202      3    8   47     3    3    4    7   10   11   14   18   23   26   29   35   40   44   48   52   55   60   65   71 
LCS_GDT     T     203     T     203      3    5   47     3    3    6    7    7    7   10   17   23   26   29   32   38   44   47   51   55   57   62   66 
LCS_GDT     P     204     P     204      3    5   31     3    3    4    5    8    8   10   18   23   26   29   30   36   41   43   47   53   56   62   66 
LCS_GDT     L     205     L     205      3    9   31     3    3    7    8    9    9    9   18   22   26   29   33   36   41   43   47   53   56   62   66 
LCS_GDT     A     206     A     206      7    9   31     3    4    7    8    8   10   13   18   23   26   29   33   36   41   43   47   53   56   62   66 
LCS_GDT     P     207     P     207      7    9   31     3    4    7    8    8   10   13   18   23   26   29   33   36   41   43   47   53   56   62   66 
LCS_GDT     V     208     V     208      7    9   31     3    5    7    8    8   10   13   18   23   26   29   33   36   41   43   47   53   56   62   66 
LCS_GDT     L     209     L     209      7    9   31     4    5    7    8    8   10   13   18   23   26   29   33   36   41   43   47   53   56   62   66 
LCS_GDT     F     210     F     210      7    9   31     4    5    7    8    8   10   13   18   23   26   29   33   36   41   43   47   53   56   62   66 
LCS_GDT     E     211     E     211      7    9   31     4    5    7    8    8   10   12   18   23   26   29   30   33   41   43   47   53   56   62   66 
LCS_GDT     H     212     H     212      7    9   31     4    5    7    8    8   10   12   18   23   26   29   30   36   41   43   47   53   56   62   66 
LCS_GDT     G     213     G     213      4    9   31     3    4    5    7    8   10   12   14   23   26   28   30   33   41   43   47   53   56   62   66 
LCS_GDT     L     214     L     214      3    9   31     3    3    5    8    8   10   13   16   23   26   29   33   36   41   43   47   53   56   62   66 
LCS_GDT     Q     215     Q     215      3   14   31     3    3    4   11   13   16   18   19   21   22   26   29   32   38   43   46   53   56   62   66 
LCS_GDT     E     216     E     216      5   14   31     3    5    8   10   13   16   18   19   21   22   24   29   31   36   40   48   53   56   62   65 
LCS_GDT     L     217     L     217      5   14   31     3    6    8   11   13   16   18   19   21   22   26   29   31   38   43   48   53   56   62   66 
LCS_GDT     S     218     S     218      5   14   31     3    5    8   11   13   16   18   19   21   27   33   39   41   45   48   52   56   58   62   66 
LCS_GDT     G     219     G     219      5   14   31     3    6    8   11   13   16   18   19   22   28   35   39   42   46   50   53   56   58   62   67 
LCS_GDT     F     220     F     220      5   14   31     3    4    5    7   13   16   18   19   21   22   26   29   34   41   45   52   55   58   62   66 
LCS_GDT     M     221     M     221      4   14   31     3    6    8   11   13   16   18   19   21   22   26   33   36   41   43   47   53   56   62   66 
LCS_GDT     V     222     V     222      4   14   31     3    4    7   11   13   16   18   19   21   22   26   33   36   41   43   48   56   58   63   67 
LCS_GDT     K     223     K     223      4   14   31     3    6    8   11   13   16   18   19   21   22   26   33   36   41   43   47   53   56   62   66 
LCS_GDT     D     224     D     224      3   14   31     3    3    4    5   12   16   18   19   21   22   25   33   36   41   43   47   53   56   62   66 
LCS_GDT     N     225     N     225     10   14   31    10   10   10   11   13   16   18   19   21   27   33   39   42   46   51   52   58   63   67   71 
LCS_GDT     A     226     A     226     10   14   31    10   10   10   11   13   16   18   19   21   26   33   37   44   49   53   56   59   63   67   71 
LCS_GDT     R     227     R     227     10   14   31    10   10   10   11   13   16   18   19   21   22   28   33   41   49   53   56   59   63   67   71 
LCS_GDT     A     228     A     228     10   14   31    10   10   10   11   13   16   18   19   21   25   34   39   46   49   53   56   59   63   67   71 
LCS_GDT     F     229     F     229     10   14   31    10   10   10   11   11   16   18   19   21   22   30   38   42   48   52   56   59   63   67   71 
LCS_GDT     R     230     R     230     10   11   31    10   10   10   11   11   13   18   19   21   22   26   34   39   44   52   56   59   63   67   71 
LCS_GDT     I     231     I     231     10   11   25    10   10   10   11   11   16   18   19   21   22   24   28   32   39   48   54   59   62   67   71 
LCS_GDT     V     232     V     232     10   11   25    10   10   10   11   11   12   14   15   16   20   28   34   37   44   52   56   59   62   67   71 
LCS_GDT     A     233     A     233     10   11   25    10   10   10   11   11   12   14   15   16   20   23   25   29   38   48   52   57   62   66   71 
LCS_GDT     G     234     G     234     10   11   25    10   10   10   11   11   12   14   15   16   20   23   25   28   32   36   43   52   57   65   68 
LCS_GDT     A     235     A     235      4   11   25     3    4    4    4    5    5    6    9   12   13   15   15   21   24   24   25   27   43   43   51 
LCS_GDT     E     236     E     236      4    5   25     3    4    4    4    5    5    7    8    9   13   15   18   23   24   35   39   41   45   57   68 
LCS_GDT     K     237     K     237      4    5   25     3    4    4    4    5    6    9   11   16   18   21   24   27   37   48   52   57   62   66   71 
LCS_GDT     V     238     V     238      3    4   25     3    3    3    4    6    7    9   11   16   18   21   26   29   33   48   52   57   62   66   71 
LCS_GDT     K     239     K     239      4    4   25     3    4    4    4    5    7   10   12   16   18   21   26   35   42   48   53   59   62   66   71 
LCS_GDT     I     240     I     240      4    4   23     3    4    4    4    4    5   10   12   13   14   25   26   30   35   42   51   55   62   65   70 
LCS_GDT     Y     241     Y     241      4    4   15     3    4    4    4    4   16   18   21   22   26   26   30   32   38   47   52   57   62   65   71 
LCS_GDT     S     242     S     242      4    7   15     3    4    4    4    7    7   10   11   12   16   19   20   21   30   35   43   50   53   58   68 
LCS_GDT     A     243     A     243      5    8   15     3    4    5    7    7    7   10   11   12   12   19   20   21   30   35   39   41   43   43   51 
LCS_GDT     G     244     G     244      5    8   15     3    4    5    7    7    9   10   11   12   14   16   20   23   27   35   43   56   62   65   69 
LCS_GDT     Q     245     Q     245      5    8   15     3    4    5    7    7    7   10   11   12   13   18   28   36   44   52   56   59   63   67   71 
LCS_GDT     K     246     K     246      5    8   15     3    4    5    7    7    7   10   15   18   24   30   37   42   48   52   56   59   63   67   71 
LCS_GDT     V     247     V     247      5    8   15     3    4    5    8    8    8   12   18   22   24   30   37   45   49   53   56   59   63   67   71 
LCS_GDT     T     248     T     248      5    8   15     3    4    5    7    7    7   18   20   21   26   31   35   45   47   52   56   59   63   67   71 
LCS_GDT     I     249     I     249      5    8   15     3    4    5    7    7    7   10   11   12   14   25   29   36   41   47   52   56   61   63   67 
LCS_GDT     K     250     K     250      5    8   15     1    4    5    7    7    7   10   11   12   14   14   16   19   19   19   25   30   32   33   46 
LCS_GDT     K     251     K     251      3    6   15     0    3    3    5    5    6    6   10   12   14   14   16   17   17   18   20   21   22   32   34 
LCS_AVERAGE  LCS_A:  10.05  (   3.60    5.78   20.77 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     10     10     13     15     17     19     24     30     34     39     42     46     49     53     56     59     63     67     71 
GDT PERCENT_CA   6.76   6.76   6.76   8.78  10.14  11.49  12.84  16.22  20.27  22.97  26.35  28.38  31.08  33.11  35.81  37.84  39.86  42.57  45.27  47.97
GDT RMS_LOCAL    0.25   0.25   0.25   1.33   1.68   1.89   2.10   3.09   3.38   3.60   3.91   4.08   4.35   4.55   4.96   5.63   5.69   5.83   6.17   6.97
GDT RMS_ALL_CA  20.07  20.07  20.07  18.50  18.75  18.83  18.92  18.52  20.33  18.69  19.52  19.43  19.37  19.24  18.59  17.05  17.33  17.88  17.60  16.45

#      Molecule1      Molecule2       DISTANCE
LGA    V      97      V      97         32.125
LGA    I      98      I      98         36.997
LGA    F      99      F      99         37.721
LGA    S     100      S     100         44.876
LGA    D     101      D     101         45.477
LGA    A     102      A     102         45.167
LGA    N     110      N     110         41.169
LGA    D     111      D     111         38.250
LGA    P     112      P     112         35.559
LGA    F     113      F     113         31.166
LGA    I     114      I     114         33.955
LGA    M     115      M     115         35.724
LGA    S     116      S     116         32.900
LGA    Q     117      Q     117         31.954
LGA    N     118      N     118         27.047
LGA    E     119      E     119         21.803
LGA    V     120      V     120         17.415
LGA    K     121      K     121         14.343
LGA    G     122      G     122         11.421
LGA    K     123      K     123          7.062
LGA    K     124      K     124          8.914
LGA    V     125      V     125          8.564
LGA    G     126      G     126          9.731
LGA    V     127      V     127         13.082
LGA    V     128      V     128         14.446
LGA    G     129      G     129         17.747
LGA    H     130      H     130         19.485
LGA    F     131      F     131         23.338
LGA    P     132      P     132         25.602
LGA    H     133      H     133         26.616
LGA    L     134      L     134         22.077
LGA    E     135      E     135         26.989
LGA    S     136      S     136         28.667
LGA    L     137      L     137         22.998
LGA    L     138      L     138         18.006
LGA    E     139      E     139         19.033
LGA    P     140      P     140         16.306
LGA    I     141      I     141         10.174
LGA    C     142      C     142          4.467
LGA    D     143      D     143          3.656
LGA    L     144      L     144          1.736
LGA    S     145      S     145          1.085
LGA    I     146      I     146          3.961
LGA    L     147      L     147          3.787
LGA    E     148      E     148          3.377
LGA    W     149      W     149          4.877
LGA    S     150      S     150          8.404
LGA    P     151      P     151         14.416
LGA    E     152      E     152         18.009
LGA    E     153      E     153         22.560
LGA    G     154      G     154         21.415
LGA    D     155      D     155         19.395
LGA    Y     156      Y     156         14.308
LGA    P     157      P     157         11.031
LGA    L     158      L     158          5.258
LGA    P     159      P     159          2.800
LGA    A     160      A     160          1.635
LGA    S     161      S     161          2.250
LGA    E     162      E     162          1.675
LGA    F     163      F     163          1.744
LGA    I     164      I     164          2.621
LGA    L     165      L     165          5.004
LGA    P     166      P     166          8.587
LGA    E     167      E     167          5.558
LGA    C     168      C     168          3.277
LGA    D     169      D     169          6.989
LGA    Y     170      Y     170          7.651
LGA    V     171      V     171          8.226
LGA    Y     172      Y     172          9.059
LGA    I     173      I     173          7.066
LGA    T     174      T     174          3.982
LGA    C     175      C     175          5.329
LGA    A     176      A     176          3.851
LGA    S     177      S     177          4.211
LGA    V     178      V     178          4.113
LGA    V     179      V     179          7.223
LGA    D     180      D     180          8.201
LGA    K     181      K     181          4.568
LGA    T     182      T     182          4.901
LGA    L     183      L     183          4.881
LGA    P     184      P     184          3.759
LGA    R     185      R     185          3.700
LGA    L     186      L     186          3.617
LGA    L     187      L     187          3.462
LGA    E     188      E     188          3.086
LGA    L     189      L     189          3.042
LGA    S     190      S     190          4.000
LGA    R     191      R     191          5.918
LGA    N     192      N     192          6.550
LGA    A     193      A     193          8.579
LGA    R     194      R     194          9.218
LGA    R     195      R     195         10.048
LGA    I     196      I     196          6.912
LGA    T     197      T     197          7.097
LGA    L     198      L     198          6.713
LGA    V     199      V     199          2.979
LGA    G     200      G     200          3.208
LGA    P     201      P     201          7.821
LGA    G     202      G     202         12.976
LGA    T     203      T     203         15.236
LGA    P     204      P     204         20.392
LGA    L     205      L     205         25.791
LGA    A     206      A     206         25.255
LGA    P     207      P     207         26.699
LGA    V     208      V     208         30.652
LGA    L     209      L     209         27.606
LGA    F     210      F     210         25.936
LGA    E     211      E     211         29.145
LGA    H     212      H     212         29.015
LGA    G     213      G     213         28.513
LGA    L     214      L     214         24.118
LGA    Q     215      Q     215         27.318
LGA    E     216      E     216         22.990
LGA    L     217      L     217         21.251
LGA    S     218      S     218         15.670
LGA    G     219      G     219         13.519
LGA    F     220      F     220         15.204
LGA    M     221      M     221         16.481
LGA    V     222      V     222         12.927
LGA    K     223      K     223         16.905
LGA    D     224      D     224         14.578
LGA    N     225      N     225          9.786
LGA    A     226      A     226          7.683
LGA    R     227      R     227          7.597
LGA    A     228      A     228          6.915
LGA    F     229      F     229          9.185
LGA    R     230      R     230         11.179
LGA    I     231      I     231         11.652
LGA    V     232      V     232         11.636
LGA    A     233      A     233         16.493
LGA    G     234      G     234         18.934
LGA    A     235      A     235         21.816
LGA    E     236      E     236         18.451
LGA    K     237      K     237         18.598
LGA    V     238      V     238         18.059
LGA    K     239      K     239         15.216
LGA    I     240      I     240         16.279
LGA    Y     241      Y     241         14.735
LGA    S     242      S     242         18.976
LGA    A     243      A     243         20.494
LGA    G     244      G     244         14.939
LGA    Q     245      Q     245         10.861
LGA    K     246      K     246          8.762
LGA    V     247      V     247          7.465
LGA    T     248      T     248          7.890
LGA    I     249      I     249         10.613
LGA    K     250      K     250         17.004
LGA    K     251      K     251         17.967

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  155  148    4.0     24    3.09    17.399    14.448     0.752

LGA_LOCAL      RMSD =  3.092  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.318  Number of atoms =  148 
Std_ALL_ATOMS  RMSD = 15.221  (standard rmsd on all 148 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.948155 * X  +  -0.312246 * Y  +  -0.059190 * Z  +  11.778436
  Y_new =   0.174828 * X  +  -0.667994 * Y  +   0.723339 * Z  +  39.854836
  Z_new =  -0.265398 * X  +   0.675490 * Y  +   0.687952 * Z  +  61.164951 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.776258   -2.365335  [ DEG:    44.4763   -135.5237 ]
  Theta =   0.268617    2.872976  [ DEG:    15.3906    164.6094 ]
  Phi   =   2.959253   -0.182340  [ DEG:   169.5527    -10.4473 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0321TS168_4-D2                               
REMARK     2: T0321_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0321TS168_4-D2.T0321_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  155  148   4.0   24   3.09  14.448    15.22
REMARK  ---------------------------------------------------------- 
MOLECULE T0321TS168_4-D2
PFRMAT TS
TARGET T0321
MODEL 4
PARENT N/A
ATOM     97  CA  VAL    97      -6.363  20.529  57.639  1.00 25.00           C
ATOM     98  CA  ILE    98      -6.360  22.354  54.291  1.00 25.00           C
ATOM     99  CA  PHE    99      -3.412  24.669  54.758  1.00 25.00           C
ATOM    100  CA  SER   100      -1.764  22.475  52.085  1.00 25.00           C
ATOM    101  CA  ASP   101       1.647  24.021  52.887  1.00 25.00           C
ATOM    102  CA  ALA   102       1.099  23.357  56.619  1.00 25.00           C
ATOM    103  CA  LYS   103       0.163  19.722  55.860  1.00 25.00           C
ATOM    104  CA  ARG   104       3.321  19.328  53.731  1.00 25.00           C
ATOM    105  CA  VAL   105       5.445  20.780  56.567  1.00 25.00           C
ATOM    106  CA  GLU   106       3.834  18.349  59.051  1.00 25.00           C
ATOM    107  CA  ASP   107       4.555  15.421  56.690  1.00 25.00           C
ATOM    108  CA  ARG   108       8.201  16.548  56.365  1.00 25.00           C
ATOM    109  CA  MET   109       7.560  15.796  52.642  1.00 25.00           C
ATOM    110  CA  ASN   110      10.800  17.723  52.241  1.00 25.00           C
ATOM    111  CA  ASP   111      13.091  16.838  55.196  1.00 25.00           C
ATOM    112  CA  PRO   112      16.126  17.629  52.999  1.00 25.00           C
ATOM    113  CA  PHE   113      17.177  20.413  55.409  1.00 25.00           C
ATOM    114  CA  ILE   114      16.844  18.007  58.371  1.00 25.00           C
ATOM    115  CA  MET   115      18.554  14.564  58.378  1.00 25.00           C
ATOM    116  CA  SER   116      18.786  11.906  61.044  1.00 25.00           C
ATOM    117  CA  GLN   117      20.511  12.102  64.459  1.00 25.00           C
ATOM    118  CA  ASN   118      21.604  15.687  64.878  1.00 25.00           C
ATOM    119  CA  GLU   119      22.505  19.309  64.238  1.00 25.00           C
ATOM    120  CA  VAL   120      24.105  22.083  66.320  1.00 25.00           C
ATOM    121  CA  LYS   121      21.742  24.973  67.202  1.00 25.00           C
ATOM    122  CA  GLY   122      18.462  26.929  67.487  1.00 25.00           C
ATOM    123  CA  LYS   123      17.053  30.416  66.896  1.00 25.00           C
ATOM    124  CA  LYS   124      13.234  30.383  66.830  1.00 25.00           C
ATOM    125  CA  VAL   125      11.058  33.552  67.200  1.00 25.00           C
ATOM    126  CA  GLY   126      11.726  34.248  70.896  1.00 25.00           C
ATOM    127  CA  VAL   127       7.942  34.158  71.435  1.00 25.00           C
ATOM    128  CA  VAL   128       4.665  35.892  70.585  1.00 25.00           C
ATOM    129  CA  GLY   129       2.139  34.581  68.061  1.00 25.00           C
ATOM    130  CA  HIS   130       4.302  34.201  64.992  1.00 25.00           C
ATOM    131  CA  PHE   131       3.776  30.499  64.598  1.00 25.00           C
ATOM    132  CA  PRO   132       7.460  30.185  65.676  1.00 25.00           C
ATOM    133  CA  HIS   133       8.350  28.807  69.061  1.00 25.00           C
ATOM    134  CA  LEU   134       9.932  29.219  72.491  1.00 25.00           C
ATOM    135  CA  GLU   135       8.792  25.851  73.883  1.00 25.00           C
ATOM    136  CA  SER   136      10.599  24.439  70.935  1.00 25.00           C
ATOM    137  CA  LEU   137      13.651  26.431  69.934  1.00 25.00           C
ATOM    138  CA  LEU   138      15.326  27.634  73.104  1.00 25.00           C
ATOM    139  CA  GLU   139      18.820  26.890  74.498  1.00 25.00           C
ATOM    140  CA  PRO   140      20.476  29.088  71.890  1.00 25.00           C
ATOM    141  CA  ILE   141      22.660  31.798  70.355  1.00 25.00           C
ATOM    142  CA  CYS   142      21.459  35.350  70.362  1.00 25.00           C
ATOM    143  CA  ASP   143      21.113  38.879  69.121  1.00 25.00           C
ATOM    144  CA  LEU   144      20.866  39.996  65.496  1.00 25.00           C
ATOM    145  CA  SER   145      20.033  41.179  61.981  1.00 25.00           C
ATOM    146  CA  ILE   146      16.269  41.608  61.536  1.00 25.00           C
ATOM    147  CA  LEU   147      13.193  42.812  59.767  1.00 25.00           C
ATOM    148  CA  GLU   148      11.992  45.808  57.773  1.00 25.00           C
ATOM    149  CA  TRP   149       8.778  47.136  56.143  1.00 25.00           C
ATOM    150  CA  SER   150       7.269  50.675  56.088  1.00 25.00           C
ATOM    151  CA  PRO   151       4.051  52.681  55.788  1.00 25.00           C
ATOM    152  CA  GLU   152       3.883  54.278  52.343  1.00 25.00           C
ATOM    153  CA  GLU   153       3.607  52.137  49.247  1.00 25.00           C
ATOM    154  CA  GLY   154       5.138  49.477  51.481  1.00 25.00           C
ATOM    155  CA  ASP   155       4.211  46.092  50.017  1.00 25.00           C
ATOM    156  CA  TYR   156       6.272  43.650  52.056  1.00 25.00           C
ATOM    157  CA  PRO   157       7.881  42.705  48.753  1.00 25.00           C
ATOM    158  CA  LEU   158      11.134  41.604  50.488  1.00 25.00           C
ATOM    159  CA  PRO   159      14.070  39.250  49.775  1.00 25.00           C
ATOM    160  CA  ALA   160      16.017  40.747  52.714  1.00 25.00           C
ATOM    161  CA  SER   161      12.982  40.270  55.000  1.00 25.00           C
ATOM    162  CA  GLU   162      12.665  36.628  53.861  1.00 25.00           C
ATOM    163  CA  PHE   163      16.387  36.059  54.564  1.00 25.00           C
ATOM    164  CA  ILE   164      15.987  37.589  58.052  1.00 25.00           C
ATOM    165  CA  LEU   165      19.599  36.857  58.985  1.00 25.00           C
ATOM    166  CA  PRO   166      21.687  36.089  62.084  1.00 25.00           C
ATOM    167  CA  GLU   167      20.156  34.929  65.345  1.00 25.00           C
ATOM    168  CA  CYS   168      16.809  35.474  67.126  1.00 25.00           C
ATOM    169  CA  ASP   169      16.633  39.246  66.664  1.00 25.00           C
ATOM    170  CA  TYR   170      14.983  42.517  65.677  1.00 25.00           C
ATOM    171  CA  VAL   171      13.958  45.646  63.902  1.00 25.00           C
ATOM    172  CA  TYR   172      12.727  48.352  61.552  1.00 25.00           C
ATOM    173  CA  ILE   173       9.096  49.060  60.843  1.00 25.00           C
ATOM    174  CA  THR   174       6.085  50.032  63.064  1.00 25.00           C
ATOM    175  CA  CYS   175       2.855  51.465  61.743  1.00 25.00           C
ATOM    176  CA  ALA   176       1.406  48.510  63.702  1.00 25.00           C
ATOM    177  CA  SER   177       0.402  46.799  60.426  1.00 25.00           C
ATOM    178  CA  VAL   178       3.930  47.335  59.036  1.00 25.00           C
ATOM    179  CA  VAL   179       5.439  45.847  62.227  1.00 25.00           C
ATOM    180  CA  ASP   180       3.117  42.815  61.939  1.00 25.00           C
ATOM    181  CA  LYS   181       4.146  42.343  58.280  1.00 25.00           C
ATOM    182  CA  THR   182       7.841  42.526  59.270  1.00 25.00           C
ATOM    183  CA  LEU   183       7.260  39.921  62.016  1.00 25.00           C
ATOM    184  CA  PRO   184       5.497  37.630  59.504  1.00 25.00           C
ATOM    185  CA  ARG   185       8.421  38.018  57.062  1.00 25.00           C
ATOM    186  CA  LEU   186      10.899  37.161  59.853  1.00 25.00           C
ATOM    187  CA  LEU   187       8.845  34.057  60.758  1.00 25.00           C
ATOM    188  CA  GLU   188       8.811  32.979  57.084  1.00 25.00           C
ATOM    189  CA  LEU   189      12.607  33.443  56.887  1.00 25.00           C
ATOM    190  CA  SER   190      13.053  31.348  60.061  1.00 25.00           C
ATOM    191  CA  ARG   191      13.183  28.004  61.748  1.00 25.00           C
ATOM    192  CA  ASN   192      16.972  28.546  62.141  1.00 25.00           C
ATOM    193  CA  ALA   193      19.057  31.698  61.597  1.00 25.00           C
ATOM    194  CA  ARG   194      15.776  33.402  62.655  1.00 25.00           C
ATOM    195  CA  ARG   195      15.150  37.111  62.692  1.00 25.00           C
ATOM    196  CA  ILE   196      12.330  39.484  63.420  1.00 25.00           C
ATOM    197  CA  THR   197      10.294  42.715  63.861  1.00 25.00           C
ATOM    198  CA  LEU   198       9.397  46.400  64.252  1.00 25.00           C
ATOM    199  CA  VAL   199       7.661  47.883  67.295  1.00 25.00           C
ATOM    200  CA  GLY   200       7.764  51.584  68.096  1.00 25.00           C
ATOM    201  CA  PRO   201       9.447  54.946  67.478  1.00 25.00           C
ATOM    202  CA  GLY   202      10.997  57.896  65.736  1.00 25.00           C
ATOM    203  CA  THR   203       8.017  59.482  64.108  1.00 25.00           C
ATOM    204  CA  PRO   204       8.136  60.188  60.380  1.00 25.00           C
ATOM    205  CA  LEU   205      11.661  59.934  58.861  1.00 25.00           C
ATOM    206  CA  ALA   206      11.900  56.685  60.876  1.00 25.00           C
ATOM    207  CA  PRO   207       9.971  54.820  58.143  1.00 25.00           C
ATOM    208  CA  VAL   208      12.327  56.239  55.477  1.00 25.00           C
ATOM    209  CA  LEU   209      15.362  55.135  57.536  1.00 25.00           C
ATOM    210  CA  PHE   210      13.877  51.622  57.887  1.00 25.00           C
ATOM    211  CA  GLU   211      13.282  51.470  54.107  1.00 25.00           C
ATOM    212  CA  HIS   212      16.898  52.558  53.469  1.00 25.00           C
ATOM    213  CA  GLY   213      19.732  53.308  55.868  1.00 25.00           C
ATOM    214  CA  LEU   214      19.286  49.659  56.879  1.00 25.00           C
ATOM    215  CA  GLN   215      22.829  49.910  58.234  1.00 25.00           C
ATOM    216  CA  GLU   216      21.985  48.121  61.484  1.00 25.00           C
ATOM    217  CA  LEU   217      19.466  50.751  62.381  1.00 25.00           C
ATOM    218  CA  SER   218      16.301  50.324  64.455  1.00 25.00           C
ATOM    219  CA  GLY   219      12.868  51.871  65.259  1.00 25.00           C
ATOM    220  CA  PHE   220      10.362  52.871  62.640  1.00 25.00           C
ATOM    221  CA  MET   221       7.006  54.560  63.095  1.00 25.00           C
ATOM    222  CA  VAL   222       4.243  54.473  65.703  1.00 25.00           C
ATOM    223  CA  LYS   223       1.328  55.895  63.762  1.00 25.00           C
ATOM    224  CA  ASP   224       1.041  59.344  65.167  1.00 25.00           C
ATOM    225  CA  ASN   225      -1.628  60.774  67.419  1.00 25.00           C
ATOM    226  CA  ALA   226      -1.143  61.545  71.139  1.00 25.00           C
ATOM    227  CA  ARG   227      -2.014  57.924  72.029  1.00 25.00           C
ATOM    228  CA  ALA   228       0.500  56.655  69.433  1.00 25.00           C
ATOM    229  CA  PHE   229       3.192  58.964  70.877  1.00 25.00           C
ATOM    230  CA  ARG   230       2.439  57.676  74.405  1.00 25.00           C
ATOM    231  CA  ILE   231       2.703  54.061  73.168  1.00 25.00           C
ATOM    232  CA  VAL   232       6.061  54.850  71.503  1.00 25.00           C
ATOM    233  CA  ALA   233       7.327  56.437  74.750  1.00 25.00           C
ATOM    234  CA  GLY   234       6.225  53.342  76.720  1.00 25.00           C
ATOM    235  CA  ALA   235       8.038  51.076  74.222  1.00 25.00           C
ATOM    236  CA  GLU   236      11.206  53.203  74.552  1.00 25.00           C
ATOM    237  CA  LYS   237      10.988  52.976  78.369  1.00 25.00           C
ATOM    238  CA  VAL   238      10.591  49.174  78.146  1.00 25.00           C
ATOM    239  CA  LYS   239      13.643  48.967  75.839  1.00 25.00           C
ATOM    240  CA  ILE   240      15.676  51.087  78.297  1.00 25.00           C
ATOM    241  CA  TYR   241      14.614  48.804  81.182  1.00 25.00           C
ATOM    242  CA  SER   242      14.859  45.523  79.273  1.00 25.00           C
ATOM    243  CA  ALA   243      12.765  43.920  76.500  1.00 25.00           C
ATOM    244  CA  GLY   244       8.980  44.599  76.476  1.00 25.00           C
ATOM    245  CA  GLN   245       5.571  44.435  74.797  1.00 25.00           C
ATOM    246  CA  LYS   246       2.063  43.266  73.899  1.00 25.00           C
ATOM    247  CA  VAL   247      -0.877  44.942  72.175  1.00 25.00           C
ATOM    248  CA  THR   248      -3.704  45.164  74.742  1.00 25.00           C
ATOM    249  CA  ILE   249      -6.789  47.035  75.850  1.00 25.00           C
ATOM    250  CA  LYS   250     -10.175  47.870  77.342  1.00 25.00           C
ATOM    251  CA  LYS   251      -9.458  47.231  81.045  1.00 25.00           C
TER
END
