
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0319TS393_5
# Molecule2: number of CA atoms  135 ( 1055),  selected  135 , name T0319.pdb
# PARAMETERS: T0319TS393_5.T0319.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    34        37 - 70          4.96    18.96
  LONGEST_CONTINUOUS_SEGMENT:    34        38 - 71          4.95    19.04
  LONGEST_CONTINUOUS_SEGMENT:    34        39 - 72          4.93    19.00
  LCS_AVERAGE:     19.71

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        84 - 104         1.94    17.51
  LONGEST_CONTINUOUS_SEGMENT:    21        85 - 105         1.88    17.41
  LCS_AVERAGE:      8.19

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        86 - 101         0.66    17.77
  LCS_AVERAGE:      5.02

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     M       1     M       1      4    4   15     3    4    6    7    8   11   14   16   27   30   34   36   38   40   42   45   46   49   51   57 
LCS_GDT     K       2     K       2      4    4   15     3    4   11   15   16   19   23   24   27   30   34   36   38   40   43   45   49   54   58   62 
LCS_GDT     F       3     F       3      4    4   15     3    4    5    5    7   16   18   22   26   30   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     L       4     L       4      4    4   22     1    4    5    5    7   16   18   19   25   28   31   36   38   40   43   45   49   54   58   63 
LCS_GDT     T       5     T       5      3    4   22     0    3    6   11   13   19   23   24   27   30   34   36   38   40   43   46   53   57   59   64 
LCS_GDT     T       6     T       6      3    4   22     3    3    5    9   18   20   24   25   27   28   32   34   38   40   43   47   53   57   59   64 
LCS_GDT     N       7     N       7      4    7   22     3    4    5    6    7   20   24   25   27   28   32   34   38   40   43   47   53   57   59   64 
LCS_GDT     F       8     F       8      4    7   22     3    4   12   15   16   19   23   25   27   30   34   36   38   40   43   47   53   57   59   64 
LCS_GDT     L       9     L       9      4    7   22     0    4   12   15   16   19   23   24   27   30   34   36   38   40   43   47   53   57   59   64 
LCS_GDT     K      10     K      10      4    7   22     3    4    5    9   10   16   23   24   27   30   34   36   38   40   43   47   53   57   59   64 
LCS_GDT     C      11     C      11      4    7   22     4    4    5   15   16   19   23   24   27   30   34   36   38   40   43   45   48   51   58   64 
LCS_GDT     S      12     S      12      4    7   22     4    4    5    6    7    9   18   19   23   23   26   29   32   38   40   44   46   49   51   55 
LCS_GDT     V      13     V      13      4    7   22     4    4    5    6   11   16   23   24   27   30   33   36   38   40   43   45   46   49   53   64 
LCS_GDT     K      14     K      14      4    6   22     4    4    5    6    7    8   11   15   19   20   23   26   29   30   33   36   46   50   58   64 
LCS_GDT     A      15     A      15      4    7   22     3    4    5    6    7    7    8    9   11   19   23   26   29   30   31   33   37   41   43   47 
LCS_GDT     C      16     C      16      4    7   22     3    3    5    6    7    7    8    9   11   14   21   26   29   30   31   33   37   41   49   64 
LCS_GDT     D      17     D      17      4    7   22     3    4    5    6    7    9   11   15   18   19   23   26   29   30   40   47   53   57   59   64 
LCS_GDT     T      18     T      18      4    7   22     3    4    5    6    7    9   11   15   18   19   30   34   36   39   41   47   53   57   59   64 
LCS_GDT     S      19     S      19      4    7   22     3    4    5    6    7    9   11   15   18   27   30   33   35   39   41   47   53   57   59   64 
LCS_GDT     N      20     N      20      4    8   22     3    3    5    6   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     D      21     D      21      4    9   22     3    4    5    9    9   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     N      22     N      22      4    9   22     3    3    5    7    9   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     F      23     F      23      4    9   22     2    3    5    9    9   10   24   25   27   28   30   33   35   39   41   46   53   57   59   61 
LCS_GDT     P      24     P      24      4    9   22     3    3    5    9    9   18   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     L      25     L      25      4    9   22     3    3    5    9    9   10   13   23   26   28   32   34   38   40   43   47   53   57   59   64 
LCS_GDT     Q      26     Q      26      4    9   18     3    4    5    9    9   10   15   17   19   23   28   31   38   40   43   47   53   57   59   64 
LCS_GDT     Y      27     Y      27      4    9   18     1    4    5    9    9   10   11   16   20   25   30   34   38   40   43   46   50   54   59   64 
LCS_GDT     D      28     D      28      3    9   19     3    4    4    9    9   10   11   13   16   18   22   30   34   38   41   46   50   54   59   63 
LCS_GDT     G      29     G      29      4    9   19     3    3    4    9    9   10   12   14   16   18   19   21   27   31   36   43   49   52   57   63 
LCS_GDT     S      30     S      30      4    7   19     3    3    4    7    8   10   11   14   16   18   19   21   22   28   33   37   41   44   53   62 
LCS_GDT     K      31     K      31      4   10   19     3    3    5    7    8   11   14   14   16   18   19   21   22   25   33   37   41   44   52   62 
LCS_GDT     C      32     C      32      4   10   19     1    3    5    7   10   11   14   14   16   18   19   21   22   28   34   39   45   51   57   63 
LCS_GDT     Q      33     Q      33      4   10   19     0    3    5    7   10   11   14   14   16   18   19   21   22   25   32   37   41   45   58   64 
LCS_GDT     L      34     L      34      5   10   19     3    4    6    7   10   11   14   14   16   18   21   25   30   37   41   46   50   54   59   64 
LCS_GDT     V      35     V      35      5   10   19     3    4    6    7   10   11   14   14   16   18   22   25   27   30   38   40   50   54   59   63 
LCS_GDT     Q      36     Q      36      5   10   28     3    4    6    7   10   11   14   14   16   18   22   25   34   38   41   46   50   54   59   63 
LCS_GDT     D      37     D      37      5   10   34     2    4    6    7   10   11   14   16   20   22   28   31   37   40   43   46   50   54   59   63 
LCS_GDT     E      38     E      38      5   10   34     3    4    6    7   10   12   14   17   22   26   30   32   36   40   43   46   50   54   59   63 
LCS_GDT     S      39     S      39      4   10   34     3    4    5    7   11   16   18   19   22   26   30   32   37   40   43   46   50   54   59   63 
LCS_GDT     I      40     I      40      4   10   34     3    4    5    7   12   14   16   19   22   28   30   34   38   40   43   46   50   54   59   63 
LCS_GDT     E      41     E      41      4   10   34     1    4    5    7   12   14   17   22   26   30   32   36   38   40   43   46   50   54   59   63 
LCS_GDT     F      42     F      42      4   11   34     3    3    4    7   16   19   23   24   27   30   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     N      43     N      43     10   11   34     4   11   11   11   11   12   15   17   18   21   31   35   37   40   43   46   49   54   58   63 
LCS_GDT     P      44     P      44     10   11   34     9   11   11   11   11   12   15   17   18   24   30   32   36   40   43   45   49   54   58   63 
LCS_GDT     E      45     E      45     10   11   34     9   11   11   11   11   12   15   17   21   26   30   32   37   40   43   46   49   54   58   63 
LCS_GDT     F      46     F      46     10   11   34     9   11   11   11   11   12   16   21   26   30   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     L      47     L      47     10   11   34     9   11   11   11   11   12   15   24   27   30   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     L      48     L      48     10   11   34     9   11   11   11   11   12   15   17   25   29   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     N      49     N      49     10   11   34     9   11   11   11   11   14   17   24   27   30   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     I      50     I      50     10   11   34     9   11   11   11   16   19   23   24   27   30   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     V      51     V      51     10   11   34     9   11   11   12   16   19   23   24   27   30   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     D      52     D      52     10   11   34     9   11   11   11   16   19   23   24   27   30   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     R      53     R      53      4   11   34     3    4    5    7   12   13   16   20   25   28   34   35   38   40   43   46   50   54   59   63 
LCS_GDT     V      54     V      54      4    6   34     3    4    5    7   12   13   16   21   25   29   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     D      55     D      55      4   13   34     3    4    5    6    9   12   14   17   24   29   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     W      56     W      56     12   13   34    11   11   12   15   16   19   23   23   27   30   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     P      57     P      57     12   13   34    11   11   12   15   16   19   23   24   27   30   34   36   38   40   43   46   50   54   59   63 
LCS_GDT     A      58     A      58     12   13   34    11   11   12   15   16   19   23   24   27   30   34   36   38   40   43   47   53   57   59   64 
LCS_GDT     V      59     V      59     12   13   34    11   11   12   15   16   19   23   24   27   30   34   36   38   40   43   47   53   57   59   64 
LCS_GDT     L      60     L      60     12   13   34    11   11   12   15   16   19   23   24   27   30   34   36   38   40   43   47   53   57   59   64 
LCS_GDT     T      61     T      61     12   13   34    11   11   12   15   16   19   23   24   27   30   34   36   38   40   43   46   53   57   59   64 
LCS_GDT     V      62     V      62     12   13   34    11   11   12   15   16   19   23   24   27   30   34   36   38   40   43   47   53   57   59   64 
LCS_GDT     A      63     A      63     12   13   34    11   11   12   15   16   19   23   24   27   30   34   36   38   40   43   47   53   57   59   64 
LCS_GDT     A      64     A      64     12   13   34    11   11   12   15   16   19   23   24   27   30   34   36   38   40   43   46   50   54   59   64 
LCS_GDT     E      65     E      65     12   13   34    11   11   12   15   16   19   23   24   27   30   34   36   38   40   43   45   49   54   59   63 
LCS_GDT     L      66     L      66     12   13   34    11   11   12   15   16   19   23   24   27   30   34   36   38   40   43   45   49   54   59   63 
LCS_GDT     G      67     G      67     12   13   34     3    8   12   15   16   19   23   24   27   30   34   36   38   40   43   45   49   54   59   63 
LCS_GDT     N      68     N      68      4   13   34     3    4    5    6    9   12   14   21   25   30   34   36   38   40   43   45   49   53   58   62 
LCS_GDT     N      69     N      69      4    9   34     3    4    5    7   10   12   15   23   27   30   34   36   38   40   43   45   49   54   59   64 
LCS_GDT     A      70     A      70      4    9   34     1    4    5    7   10   12   15   21   25   30   34   36   38   40   43   45   49   54   59   63 
LCS_GDT     L      71     L      71      4    9   34     0    4    5    7    8   11   14   16   18   20   28   33   37   40   43   45   49   53   59   64 
LCS_GDT     P      72     P      72      4    9   34     3    4    5    7   10   12   14   16   18   19   21   28   34   38   41   45   48   53   59   64 
LCS_GDT     P      73     P      73      4    9   32     3    3    5    7   10   12   14   16   18   19   21   22   25   27   29   36   40   44   48   60 
LCS_GDT     T      74     T      74      4    9   27     3    3    5    7   10   12   14   16   18   19   21   22   25   27   32   36   40   47   55   62 
LCS_GDT     K      75     K      75      4    7   27     3    3    5    6   10   12   14   16   18   19   21   22   25   27   29   31   34   36   37   46 
LCS_GDT     P      76     P      76      4    7   27     3    3    5    6    7   11   14   16   18   19   21   22   25   27   29   32   36   44   48   64 
LCS_GDT     S      77     S      77      4    7   31     3    4    5    6   10   12   14   16   18   19   21   22   25   29   32   36   40   44   58   64 
LCS_GDT     F      78     F      78      4    7   31     3    4    5    6   10   12   14   16   18   19   21   22   25   29   32   36   43   57   59   64 
LCS_GDT     P      79     P      79      4    7   31     3    3    5    5    6    9   13   16   16   18   20   21   23   29   32   36   41   57   59   64 
LCS_GDT     S      80     S      80      4    7   31     0    3    4    5    6   12   14   16   18   21   25   26   28   31   34   47   53   57   59   64 
LCS_GDT     S      81     S      81      3    7   31     3    4    5    6   10   12   14   16   19   22   25   27   29   31   34   47   53   57   59   64 
LCS_GDT     I      82     I      82      3    7   31     2    4    5    6    9   12   14   16   18   19   21   24   29   31   40   47   53   57   59   64 
LCS_GDT     Q      83     Q      83      3    7   31     3    3    5    8   12   14   18   20   24   24   28   32   34   39   40   47   53   57   59   64 
LCS_GDT     E      84     E      84      4   21   31     3    4    9   14   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     L      85     L      85      4   21   31     3    4    5    8   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     T      86     T      86     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   45   53   57   59   61 
LCS_GDT     D      87     D      87     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   61 
LCS_GDT     D      88     D      88     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     D      89     D      89     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     M      90     M      90     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     A      91     A      91     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     I      92     I      92     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     L      93     L      93     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     N      94     N      94     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     D      95     D      95     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     L      96     L      96     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     H      97     H      97     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     T      98     T      98     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     L      99     L      99     16   21   31    14   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     L     100     L     100     16   21   31     4   15   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     L     101     L     101     16   21   31     3    5   16   16   18   20   24   25   27   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     Q     102     Q     102      7   21   31     3    5    9   15   18   20   21   22   24   28   32   34   36   39   41   46   53   57   59   64 
LCS_GDT     T     103     T     103      7   21   31     3    5   11   15   18   20   21   22   25   28   32   34   36   39   41   47   53   57   59   64 
LCS_GDT     S     104     S     104      7   21   31     3    4    7   12   18   20   21   22   24   27   32   33   36   40   43   46   53   57   59   64 
LCS_GDT     I     105     I     105      7   21   31     3    5   10   14   18   20   21   22   24   27   32   34   36   40   43   47   53   57   59   64 
LCS_GDT     A     106     A     106      4   12   31     3    4    6    9   14   17   20   22   24   26   30   32   36   40   43   46   53   57   59   64 
LCS_GDT     E     107     E     107      4   13   31     1    4    5    9   12   14   17   20   22   26   30   32   36   40   43   46   50   56   59   64 
LCS_GDT     G     108     G     108      4   13   30     3    3    5    9   12   14   16   19   22   26   30   32   36   40   42   47   53   57   59   64 
LCS_GDT     E     109     E     109      4   13   29     3    4    7    9   12   14   16   19   21   25   28   31   36   40   43   47   53   57   59   64 
LCS_GDT     M     110     M     110      4   13   28     3    4    7    9   12   14   16   19   21   26   30   32   36   40   43   46   50   54   59   64 
LCS_GDT     K     111     K     111      4   13   28     3    4    5    7   12   14   16   19   21   26   30   32   36   40   43   46   50   54   59   63 
LCS_GDT     C     112     C     112      4   13   21     3    4    7    9   12   14   16   18   21   25   29   32   36   40   43   46   50   54   59   63 
LCS_GDT     R     113     R     113      5   13   21     3    4    7    9   12   14   16   19   22   26   30   32   36   40   43   46   50   54   59   63 
LCS_GDT     N     114     N     114      5   13   21     4    6    7    9   12   14   16   19   22   26   30   32   36   40   43   46   50   54   59   63 
LCS_GDT     C     115     C     115      5   13   21     4    6    7    9   12   14   15   16   20   25   28   31   35   38   41   46   50   54   59   63 
LCS_GDT     G     116     G     116      5   13   21     4    6    6    9   12   14   15   16   18   21   27   31   35   38   40   46   50   52   59   63 
LCS_GDT     H     117     H     117      5   13   21     4    6    7    9   12   14   15   16   18   21   22   31   34   38   40   43   50   54   59   63 
LCS_GDT     I     118     I     118      4   13   21     3    4    5    9   12   14   15   16   18   24   27   31   35   38   41   46   50   54   59   63 
LCS_GDT     Y     119     Y     119      4   13   21     3    6    6    8   12   14   15   16   21   25   28   31   35   38   41   46   50   54   59   63 
LCS_GDT     Y     120     Y     120      4    9   21     2    6    6    8   11   14   15   16   21   25   28   31   35   38   41   47   53   57   59   64 
LCS_GDT     I     121     I     121      4    6   21     1    3    4    5    6    7   10   14   20   25   28   33   35   38   40   47   53   57   59   64 
LCS_GDT     K     122     K     122      4    6   21     0    3    4    5    6    7    9   12   17   19   23   33   35   36   40   47   53   57   59   64 
LCS_GDT     N     123     N     123      4    6   21     0    3    4    6    6    8   23   25   27   28   30   34   36   39   40   47   53   57   59   64 
LCS_GDT     G     124     G     124      3    4   17     3    3    3    4    4    6    7    9   11   12   14   17   21   32   32   37   42   47   50   52 
LCS_GDT     I     125     I     125      4    5   15     3    4    4    4    5    5    6    8   17   18   19   19   20   22   24   33   35   39   46   51 
LCS_GDT     P     126     P     126      4    5   15     3    4    6    9   11   12   15   17   18   18   19   19   20   22   25   27   31   34   37   42 
LCS_GDT     N     127     N     127      6    6   15     3    6    6    6    8   11   15   17   18   18   19   22   25   26   29   33   35   39   45   47 
LCS_GDT     L     128     L     128      6    6   15     3   11   11   11   11   11   11   11   13   15   16   20   23   25   28   31   32   37   42   47 
LCS_GDT     L     129     L     129      6    6   15     3    6    6    6    8    8   10   11   12   13   15   16   23   24   26   27   28   34   39   43 
LCS_GDT     L     130     L     130      6    6   15     3    6    6    6    8    8   10   11   12   13   15   16   17   18   18   18   23   27   29   31 
LCS_GDT     P     131     P     131      6    6   15     3    6    6    6    6    6   10   11   12   13   15   16   17   18   18   18   19   20   24   28 
LCS_GDT     P     132     P     132      6    6   15     3    6    6    6    8    8   10   11   12   13   15   16   17   18   18   18   19   23   24   28 
LCS_GDT     H     133     H     133      4    5   15     3    4    4    5    8    8   10   11   12   13   15   16   17   18   18   18   19   20   23   25 
LCS_GDT     L     134     L     134      4    5   15     3    4    4    5    8    8   10   10   12   13   15   16   17   18   18   18   18   20   23   25 
LCS_GDT     V     135     V     135      4    5   15     1    4    4    5    8    8   10   11   12   13   15   16   17   18   18   18   18   20   20   21 
LCS_AVERAGE  LCS_A:  10.97  (   5.02    8.19   19.71 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     16     16     18     20     24     25     27     30     34     36     38     40     43     47     53     57     59     64 
GDT PERCENT_CA  10.37  11.11  11.85  11.85  13.33  14.81  17.78  18.52  20.00  22.22  25.19  26.67  28.15  29.63  31.85  34.81  39.26  42.22  43.70  47.41
GDT RMS_LOCAL    0.17   0.32   0.66   0.66   1.33   1.71   2.21   2.29   2.56   3.15   3.65   3.71   3.95   4.21   4.64   6.02   6.36   6.65   6.50   7.53
GDT RMS_ALL_CA  17.89  17.86  17.77  17.77  17.52  17.41  17.42  17.43  17.41  19.43  19.40  19.38  19.16  19.04  18.59  17.28  17.16  17.21  18.22  17.16

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         22.149
LGA    K       2      K       2         18.580
LGA    F       3      F       3         12.178
LGA    L       4      L       4         10.639
LGA    T       5      T       5          6.727
LGA    T       6      T       6          1.861
LGA    N       7      N       7          2.877
LGA    F       8      F       8          4.130
LGA    L       9      L       9          8.133
LGA    K      10      K      10         11.133
LGA    C      11      C      11         17.304
LGA    S      12      S      12         21.035
LGA    V      13      V      13         19.886
LGA    K      14      K      14         16.800
LGA    A      15      A      15         19.046
LGA    C      16      C      16         15.207
LGA    D      17      D      17         10.630
LGA    T      18      T      18          7.316
LGA    S      19      S      19          6.499
LGA    N      20      N      20          2.548
LGA    D      21      D      21          2.534
LGA    N      22      N      22          2.642
LGA    F      23      F      23          3.915
LGA    P      24      P      24          3.364
LGA    L      25      L      25          5.816
LGA    Q      26      Q      26         10.826
LGA    Y      27      Y      27         14.549
LGA    D      28      D      28         21.166
LGA    G      29      G      29         22.963
LGA    S      30      S      30         27.311
LGA    K      31      K      31         23.325
LGA    C      32      C      32         17.148
LGA    Q      33      Q      33         15.535
LGA    L      34      L      34         14.661
LGA    V      35      V      35         14.415
LGA    Q      36      Q      36         15.292
LGA    D      37      D      37         20.440
LGA    E      38      E      38         24.508
LGA    S      39      S      39         28.341
LGA    I      40      I      40         26.568
LGA    E      41      E      41         30.164
LGA    F      42      F      42         30.370
LGA    N      43      N      43         31.877
LGA    P      44      P      44         28.449
LGA    E      45      E      45         31.110
LGA    F      46      F      46         28.563
LGA    L      47      L      47         22.107
LGA    L      48      L      48         22.824
LGA    N      49      N      49         26.023
LGA    I      50      I      50         20.327
LGA    V      51      V      51         16.331
LGA    D      52      D      52         22.003
LGA    R      53      R      53         22.144
LGA    V      54      V      54         17.078
LGA    D      55      D      55         16.810
LGA    W      56      W      56         11.253
LGA    P      57      P      57         12.237
LGA    A      58      A      58          9.229
LGA    V      59      V      59          4.807
LGA    L      60      L      60          6.008
LGA    T      61      T      61         10.331
LGA    V      62      V      62          9.926
LGA    A      63      A      63          8.975
LGA    A      64      A      64         11.147
LGA    E      65      E      65         16.239
LGA    L      66      L      66         17.033
LGA    G      67      G      67         18.286
LGA    N      68      N      68         18.623
LGA    N      69      N      69         14.120
LGA    A      70      A      70         14.349
LGA    L      71      L      71         14.173
LGA    P      72      P      72         14.251
LGA    P      73      P      73         17.724
LGA    T      74      T      74         17.198
LGA    K      75      K      75         21.886
LGA    P      76      P      76         17.705
LGA    S      77      S      77         17.588
LGA    F      78      F      78         16.138
LGA    P      79      P      79         17.039
LGA    S      80      S      80         16.952
LGA    S      81      S      81         15.187
LGA    I      82      I      82         13.870
LGA    Q      83      Q      83          9.250
LGA    E      84      E      84          2.081
LGA    L      85      L      85          1.633
LGA    T      86      T      86          2.434
LGA    D      87      D      87          2.603
LGA    D      88      D      88          2.165
LGA    D      89      D      89          2.231
LGA    M      90      M      90          2.785
LGA    A      91      A      91          2.607
LGA    I      92      I      92          2.017
LGA    L      93      L      93          2.835
LGA    N      94      N      94          3.115
LGA    D      95      D      95          2.259
LGA    L      96      L      96          2.454
LGA    H      97      H      97          3.316
LGA    T      98      T      98          2.625
LGA    L      99      L      99          2.114
LGA    L     100      L     100          2.548
LGA    L     101      L     101          3.423
LGA    Q     102      Q     102          5.957
LGA    T     103      T     103          5.919
LGA    S     104      S     104          7.415
LGA    I     105      I     105          7.522
LGA    A     106      A     106          9.979
LGA    E     107      E     107         12.439
LGA    G     108      G     108         12.359
LGA    E     109      E     109         12.792
LGA    M     110      M     110         13.666
LGA    K     111      K     111         18.266
LGA    C     112      C     112         20.320
LGA    R     113      R     113         25.111
LGA    N     114      N     114         30.158
LGA    C     115      C     115         30.947
LGA    G     116      G     116         29.674
LGA    H     117      H     117         25.606
LGA    I     118      I     118         21.042
LGA    Y     119      Y     119         15.190
LGA    Y     120      Y     120         10.253
LGA    I     121      I     121          8.235
LGA    K     122      K     122          8.610
LGA    N     123      N     123          4.503
LGA    G     124      G     124          8.445
LGA    I     125      I     125         13.012
LGA    P     126      P     126         14.938
LGA    N     127      N     127         14.426
LGA    L     128      L     128         15.994
LGA    L     129      L     129         19.661
LGA    L     130      L     130         20.328
LGA    P     131      P     131         23.405
LGA    P     132      P     132         28.676
LGA    H     133      H     133         34.505
LGA    L     134      L     134         37.722
LGA    V     135      V     135         40.944

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     25    2.29    19.074    16.316     1.046

LGA_LOCAL      RMSD =  2.289  Number of atoms =   25  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.091  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 15.131  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.386899 * X  +   0.336727 * Y  +   0.858443 * Z  +  21.791193
  Y_new =  -0.769515 * X  +   0.630851 * Y  +   0.099366 * Z  +  -1.000988
  Z_new =  -0.508090 * X  +  -0.699029 * Y  +   0.503192 * Z  +   8.914321 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.946876    2.194717  [ DEG:   -54.2520    125.7480 ]
  Theta =   0.532966    2.608627  [ DEG:    30.5367    149.4633 ]
  Phi   =  -1.104925    2.036668  [ DEG:   -63.3075    116.6925 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0319TS393_5                                  
REMARK     2: T0319.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0319TS393_5.T0319.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   25   2.29  16.316    15.13
REMARK  ---------------------------------------------------------- 
MOLECULE T0319TS393_5
PFRMAT TS
TARGET T0319
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      12.002  -1.492  -1.209  1.00 25.00           C
ATOM      2  CA  LYS     2      12.062   1.333   1.279  1.00 25.00           C
ATOM      3  CA  PHE     3      14.688   3.079   3.302  1.00 25.00           C
ATOM      4  CA  LEU     4      14.474   2.589   7.050  1.00 25.00           C
ATOM      5  CA  THR     5      17.028   1.560   9.714  1.00 25.00           C
ATOM      6  CA  THR     6      17.819   1.344  13.446  1.00 25.00           C
ATOM      7  CA  ASN     7      18.403  -2.360  14.366  1.00 25.00           C
ATOM      8  CA  PHE     8      15.605  -2.809  11.816  1.00 25.00           C
ATOM      9  CA  LEU     9      15.720  -6.401  13.068  1.00 25.00           C
ATOM     10  CA  LYS    10      14.493  -9.111  15.403  1.00 25.00           C
ATOM     11  CA  CYS    11      15.809 -11.549  12.775  1.00 25.00           C
ATOM     12  CA  SER    12      14.353 -15.022  13.189  1.00 25.00           C
ATOM     13  CA  VAL    13      11.374 -13.490  15.025  1.00 25.00           C
ATOM     14  CA  LYS    14       8.573 -13.442  12.380  1.00 25.00           C
ATOM     15  CA  ALA    15      11.409 -12.150  10.138  1.00 25.00           C
ATOM     16  CA  CYS    16      12.319  -9.134   7.989  1.00 25.00           C
ATOM     17  CA  ASP    17       8.682  -8.512   6.919  1.00 25.00           C
ATOM     18  CA  THR    18       5.960  -9.403   9.423  1.00 25.00           C
ATOM     19  CA  SER    19       6.010  -5.867  10.842  1.00 25.00           C
ATOM     20  CA  ASN    20       5.038  -4.951   7.310  1.00 25.00           C
ATOM     21  CA  ASP    21       7.213  -2.252   5.847  1.00 25.00           C
ATOM     22  CA  ASN    22       7.107  -0.210   9.039  1.00 25.00           C
ATOM     23  CA  PHE    23      10.426   0.662  10.603  1.00 25.00           C
ATOM     24  CA  PRO    24      10.946  -3.132  10.929  1.00 25.00           C
ATOM     25  CA  LEU    25      12.525  -2.777   7.449  1.00 25.00           C
ATOM     26  CA  GLN    26      15.425  -5.239   7.402  1.00 25.00           C
ATOM     27  CA  TYR    27      18.912  -6.730   7.952  1.00 25.00           C
ATOM     28  CA  ASP    28      20.903  -9.120  10.153  1.00 25.00           C
ATOM     29  CA  GLY    29      23.974 -10.429  11.918  1.00 25.00           C
ATOM     30  CA  SER    30      23.110  -9.617  15.585  1.00 25.00           C
ATOM     31  CA  LYS    31      23.105  -6.049  14.285  1.00 25.00           C
ATOM     32  CA  CYS    32      22.327  -4.033  11.149  1.00 25.00           C
ATOM     33  CA  GLN    33      20.752  -1.427   8.786  1.00 25.00           C
ATOM     34  CA  LEU    34      18.438  -1.008   5.787  1.00 25.00           C
ATOM     35  CA  VAL    35      19.706   2.511   5.196  1.00 25.00           C
ATOM     36  CA  GLN    36      18.463   6.084   4.978  1.00 25.00           C
ATOM     37  CA  ASP    37      16.750   8.923   3.140  1.00 25.00           C
ATOM     38  CA  GLU    38      14.806  12.084   3.867  1.00 25.00           C
ATOM     39  CA  SER    39      15.249  15.772   3.002  1.00 25.00           C
ATOM     40  CA  ILE    40      18.926  15.287   2.295  1.00 25.00           C
ATOM     41  CA  GLU    41      21.924  15.459  -0.119  1.00 25.00           C
ATOM     42  CA  PHE    42      20.842  12.457  -2.165  1.00 25.00           C
ATOM     43  CA  ASN    43      20.154   8.777  -3.026  1.00 25.00           C
ATOM     44  CA  PRO    44      23.128   6.467  -2.252  1.00 25.00           C
ATOM     45  CA  GLU    45      26.108   8.788  -1.615  1.00 25.00           C
ATOM     46  CA  PHE    46      24.184  10.523   1.205  1.00 25.00           C
ATOM     47  CA  LEU    47      23.339   7.123   2.754  1.00 25.00           C
ATOM     48  CA  LEU    48      27.022   6.093   2.562  1.00 25.00           C
ATOM     49  CA  ASN    49      28.054   9.373   4.246  1.00 25.00           C
ATOM     50  CA  ILE    50      25.478   8.788   7.019  1.00 25.00           C
ATOM     51  CA  VAL    51      26.808   5.234   7.537  1.00 25.00           C
ATOM     52  CA  ASP    52      30.387   6.578   7.749  1.00 25.00           C
ATOM     53  CA  ARG    53      33.398   4.308   7.634  1.00 25.00           C
ATOM     54  CA  VAL    54      31.912   0.982   6.444  1.00 25.00           C
ATOM     55  CA  ASP    55      29.004   1.440   4.089  1.00 25.00           C
ATOM     56  CA  TRP    56      26.789   0.199   6.898  1.00 25.00           C
ATOM     57  CA  PRO    57      28.555  -3.110   6.122  1.00 25.00           C
ATOM     58  CA  ALA    58      25.303  -5.026   6.763  1.00 25.00           C
ATOM     59  CA  VAL    59      23.412  -2.643   4.436  1.00 25.00           C
ATOM     60  CA  LEU    60      26.068  -3.145   1.724  1.00 25.00           C
ATOM     61  CA  THR    61      25.782  -6.945   2.112  1.00 25.00           C
ATOM     62  CA  VAL    62      21.971  -6.714   1.811  1.00 25.00           C
ATOM     63  CA  ALA    63      22.326  -4.586  -1.354  1.00 25.00           C
ATOM     64  CA  ALA    64      24.760  -7.146  -2.832  1.00 25.00           C
ATOM     65  CA  GLU    65      22.306  -9.976  -2.035  1.00 25.00           C
ATOM     66  CA  LEU    66      19.470  -8.024  -3.713  1.00 25.00           C
ATOM     67  CA  GLY    67      21.183  -9.277  -6.889  1.00 25.00           C
ATOM     68  CA  ASN    68      23.694 -10.729  -9.399  1.00 25.00           C
ATOM     69  CA  ASN    69      25.580  -7.948 -11.234  1.00 25.00           C
ATOM     70  CA  ALA    70      29.282  -7.695 -12.091  1.00 25.00           C
ATOM     71  CA  LEU    71      32.437  -8.078  -9.972  1.00 25.00           C
ATOM     72  CA  PRO    72      33.060 -11.757 -10.958  1.00 25.00           C
ATOM     73  CA  PRO    73      33.847 -14.786 -13.149  1.00 25.00           C
ATOM     74  CA  THR    74      35.110 -16.214  -9.836  1.00 25.00           C
ATOM     75  CA  LYS    75      36.494 -19.755  -9.947  1.00 25.00           C
ATOM     76  CA  PRO    76      36.159 -20.443  -6.221  1.00 25.00           C
ATOM     77  CA  SER    77      38.477 -17.565  -5.457  1.00 25.00           C
ATOM     78  CA  PHE    78      38.888 -19.352  -2.175  1.00 25.00           C
ATOM     79  CA  PRO    79      38.408 -23.172  -2.068  1.00 25.00           C
ATOM     80  CA  SER    80      38.194 -23.272   1.686  1.00 25.00           C
ATOM     81  CA  SER    81      36.539 -24.325   4.940  1.00 25.00           C
ATOM     82  CA  ILE    82      38.746 -21.880   6.874  1.00 25.00           C
ATOM     83  CA  GLN    83      37.602 -21.430  10.402  1.00 25.00           C
ATOM     84  CA  GLU    84      38.619 -20.749  13.978  1.00 25.00           C
ATOM     85  CA  LEU    85      38.770 -16.972  14.085  1.00 25.00           C
ATOM     86  CA  THR    86      37.682 -14.297  11.561  1.00 25.00           C
ATOM     87  CA  ASP    87      39.236 -10.802  11.743  1.00 25.00           C
ATOM     88  CA  ASP    88      37.331  -9.763   8.588  1.00 25.00           C
ATOM     89  CA  ASP    89      34.067 -11.085  10.094  1.00 25.00           C
ATOM     90  CA  MET    90      34.735  -9.131  13.319  1.00 25.00           C
ATOM     91  CA  ALA    91      35.395  -5.953  11.284  1.00 25.00           C
ATOM     92  CA  ILE    92      32.127  -6.477   9.359  1.00 25.00           C
ATOM     93  CA  LEU    93      30.230  -6.938  12.654  1.00 25.00           C
ATOM     94  CA  ASN    94      31.785  -3.720  14.028  1.00 25.00           C
ATOM     95  CA  ASP    95      30.770  -1.842  10.848  1.00 25.00           C
ATOM     96  CA  LEU    96      27.195  -3.180  11.171  1.00 25.00           C
ATOM     97  CA  HIS    97      27.081  -2.058  14.831  1.00 25.00           C
ATOM     98  CA  THR    98      28.324   1.423  13.829  1.00 25.00           C
ATOM     99  CA  LEU    99      25.635   1.628  11.110  1.00 25.00           C
ATOM    100  CA  LEU   100      22.955   0.609  13.649  1.00 25.00           C
ATOM    101  CA  LEU   101      24.202   3.293  16.080  1.00 25.00           C
ATOM    102  CA  GLN   102      24.078   5.913  13.288  1.00 25.00           C
ATOM    103  CA  THR   103      21.475   4.522  10.907  1.00 25.00           C
ATOM    104  CA  SER   104      18.308   6.450  10.054  1.00 25.00           C
ATOM    105  CA  ILE   105      14.750   5.884  11.093  1.00 25.00           C
ATOM    106  CA  ALA   106      12.905   6.945  14.186  1.00 25.00           C
ATOM    107  CA  GLU   107       9.581   5.471  15.299  1.00 25.00           C
ATOM    108  CA  GLY   108      11.485   4.115  18.298  1.00 25.00           C
ATOM    109  CA  GLU   109      13.795   1.468  16.811  1.00 25.00           C
ATOM    110  CA  MET   110      13.820  -2.266  16.498  1.00 25.00           C
ATOM    111  CA  LYS   111      15.694  -4.280  19.110  1.00 25.00           C
ATOM    112  CA  CYS   112      18.894  -6.338  18.582  1.00 25.00           C
ATOM    113  CA  ARG   113      20.171  -6.602  22.203  1.00 25.00           C
ATOM    114  CA  ASN   114      23.172  -8.372  23.724  1.00 25.00           C
ATOM    115  CA  CYS   115      24.852  -6.279  21.033  1.00 25.00           C
ATOM    116  CA  GLY   116      24.499  -2.786  22.421  1.00 25.00           C
ATOM    117  CA  HIS   117      24.012  -1.488  18.887  1.00 25.00           C
ATOM    118  CA  ILE   118      20.223  -1.258  18.650  1.00 25.00           C
ATOM    119  CA  TYR   119      19.554   2.419  18.013  1.00 25.00           C
ATOM    120  CA  TYR   120      17.492   5.397  16.889  1.00 25.00           C
ATOM    121  CA  ILE   121      20.445   7.600  17.998  1.00 25.00           C
ATOM    122  CA  LYS   122      21.740  10.441  20.169  1.00 25.00           C
ATOM    123  CA  ASN   123      22.101  14.041  21.376  1.00 25.00           C
ATOM    124  CA  GLY   124      22.945  17.075  23.474  1.00 25.00           C
ATOM    125  CA  ILE   125      22.267  20.769  24.230  1.00 25.00           C
ATOM    126  CA  PRO   126      19.211  21.766  22.195  1.00 25.00           C
ATOM    127  CA  ASN   127      17.280  20.023  24.957  1.00 25.00           C
ATOM    128  CA  LEU   128      14.284  20.416  22.751  1.00 25.00           C
ATOM    129  CA  LEU   129      12.047  23.427  22.208  1.00 25.00           C
ATOM    130  CA  LEU   130       8.480  22.508  22.994  1.00 25.00           C
ATOM    131  CA  PRO   131       5.534  21.344  20.778  1.00 25.00           C
ATOM    132  CA  PRO   132       3.733  24.563  21.567  1.00 25.00           C
ATOM    133  CA  HIS   133       3.617  27.242  18.949  1.00 25.00           C
ATOM    134  CA  LEU   134       1.660  28.893  16.074  1.00 25.00           C
ATOM    135  CA  VAL   135       4.889  30.506  14.882  1.00 25.00           C
TER
END
