
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  154 (  154),  selected  154 , name T0318TS393_5-D1
# Molecule2: number of CA atoms  154 ( 1200),  selected  154 , name T0318_D1.pdb
# PARAMETERS: T0318TS393_5-D1.T0318_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40       114 - 153         4.99    19.77
  LONGEST_CONTINUOUS_SEGMENT:    40       115 - 154         4.89    19.54
  LONGEST_CONTINUOUS_SEGMENT:    40       116 - 155         4.89    19.28
  LCS_AVERAGE:     17.56

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       117 - 132         1.78    20.69
  LONGEST_CONTINUOUS_SEGMENT:    16       118 - 133         1.84    20.92
  LCS_AVERAGE:      5.94

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       118 - 131         0.92    21.56
  LONGEST_CONTINUOUS_SEGMENT:    14       119 - 132         0.77    21.47
  LCS_AVERAGE:      3.99

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  154
LCS_GDT     T       2     T       2      4    5   11     2    4    4    4    5    6    7    8    8    8   11   13   15   18   20   23   25   31   37   40 
LCS_GDT     Q       3     Q       3      4    5   11     3    4    4    4    5    6    7    8    8   11   14   17   21   23   26   30   34   36   38   44 
LCS_GDT     V       4     V       4      4    5   11     3    4    4    4    5    6    7    8    8   11   14   17   21   23   26   30   34   36   40   48 
LCS_GDT     L       5     L       5      4    6   15     3    4    4    4    5    6    9   11   12   14   14   17   20   26   31   31   36   40   46   53 
LCS_GDT     V       6     V       6      5    6   16     2    3    5    6    7   10   11   13   16   17   20   29   32   34   38   39   45   52   59   67 
LCS_GDT     R       7     R       7      5    6   16     0    4    5    6    7   10   11   13   17   20   25   29   33   36   38   39   42   46   54   60 
LCS_GDT     N       8     N       8      5    7   16     3    4    5    6    7   10   11   13   17   20   25   30   33   36   38   39   42   46   54   56 
LCS_GDT     G       9     G       9      5    7   16     4    4    5    6    7   10   11   13   16   17   20   28   31   32   35   36   38   40   42   46 
LCS_GDT     I      10     I      10      5    7   16     4    4    5    6    7   10   11   13   16   17   18   22   24   26   26   29   34   36   42   46 
LCS_GDT     Q      11     Q      11      4    7   16     4    4    5    6    7   10   11   13   16   17   18   22   24   26   26   32   34   39   42   46 
LCS_GDT     A      12     A      12      4    7   16     4    4    5    6    7    9   11   13   16   17   18   22   24   26   26   29   34   34   40   46 
LCS_GDT     V      13     V      13      4    7   16     3    4    5    6    6    8    9   12   16   17   18   22   24   26   26   29   34   34   35   43 
LCS_GDT     G      14     G      14      4    7   16     3    4    5    6    7    9   10   13   16   17   18   22   24   26   26   29   34   35   39   46 
LCS_GDT     D      15     D      15      4    8   17     3    4    4    6    8   10   11   13   16   17   18   22   24   26   26   29   34   35   39   43 
LCS_GDT     G      16     G      16      4    9   17     3    3    4    6    8   10   11   12   13   15   18   19   21   23   24   29   34   35   39   43 
LCS_GDT     L      17     L      17      5    9   17     3    3    6    8   10   10   10   12   12   14   14   20   20   22   24   27   29   33   35   37 
LCS_GDT     T      18     T      18      5    9   17     1    3    6    8   10   10   10   14   16   18   19   21   22   23   24   27   29   31   33   34 
LCS_GDT     S      19     S      19      5    9   17     2    3    6    8   10   10   10   14   16   18   19   23   23   24   26   29   30   32   33   34 
LCS_GDT     L      20     L      20      5    9   17     0    3    6    8   10   10   13   17   18   19   21   23   24   28   29   31   32   34   34   39 
LCS_GDT     I      21     I      21      5    9   17     3    3    6    8   10   10   11   15   15   17   21   24   24   28   29   31   35   35   37   40 
LCS_GDT     I      22     I      22      5    9   17     3    3    6    8   10   10   13   17   17   21   22   24   25   28   29   34   35   36   48   59 
LCS_GDT     V      23     V      23      5    9   20     3    4    6    8   10   10   10   12   12   14   15   18   25   26   26   30   34   47   51   59 
LCS_GDT     G      24     G      24      4    9   20     3    4    5    7    8    9   10   12   13   14   18   19   24   29   30   31   45   48   54   62 
LCS_GDT     K      25     K      25      4    7   20     3    4    5    7    8   10   12   13   14   18   19   22   24   29   35   41   45   50   57   62 
LCS_GDT     K      26     K      26      4    7   20     3    5    8   10   10   10   12   13   14   18   19   21   26   31   37   43   48   54   62   71 
LCS_GDT     S      27     S      27      4   10   20     3    4    8   10   10   10   12   13   14   18   19   21   26   31   35   41   47   52   56   62 
LCS_GDT     V      28     V      28      4   10   20     3    4    7    8    9   10   12   13   14   18   19   22   26   31   35   41   43   45   56   61 
LCS_GDT     L      29     L      29      4   10   20     3    4    5    7    8    9   11   13   14   14   19   22   24   29   30   31   33   37   51   54 
LCS_GDT     K      30     K      30      6   10   20     3    5    6    7    8   10   12   13   14   18   19   21   24   29   35   41   43   46   56   61 
LCS_GDT     N      31     N      31      6   10   20     3    5    6    7    8   10   12   13   14   18   19   21   24   31   35   41   43   45   53   61 
LCS_GDT     V      32     V      32      6   10   20     3    5    6    7    8   10   12   13   14   18   19   22   26   31   35   41   47   50   56   61 
LCS_GDT     T      33     T      33      6   10   20     3    5    6    7    8   10   12   13   14   18   19   22   26   31   35   41   47   50   56   61 
LCS_GDT     F      34     F      34      6   10   20     3    5    6    7    8   10   12   13   14   18   19   22   26   31   35   41   49   51   56   61 
LCS_GDT     E      35     E      35      6   10   20     3    4    6    7    8   10   12   13   14   18   19   22   24   31   35   41   43   48   51   61 
LCS_GDT     G      36     G      36      5   10   20     3    3    5    7    8   10   11   13   14   15   18   20   23   28   30   31   36   48   51   54 
LCS_GDT     K      37     K      37      5    9   20     3    3    5    6    9    9   11   13   14   15   18   21   24   28   31   34   43   48   51   54 
LCS_GDT     F      38     F      38      4    9   20     3    3    4    7    9   10   10   12   14   14   18   20   26   31   35   41   47   50   56   61 
LCS_GDT     K      39     K      39      6    9   20     4    5    7    7    9   10   10   12   14   18   21   24   30   39   48   54   58   63   67   72 
LCS_GDT     E      40     E      40      6    9   20     4    5    7    7    9   10   10   13   14   17   20   24   29   33   39   54   56   63   67   73 
LCS_GDT     V      41     V      41      6    9   20     4    5    7    7    9   10   10   13   14   18   20   24   35   39   52   59   62   64   71   76 
LCS_GDT     A      42     A      42      6    9   23     4    5    7    7    9   10   12   17   23   28   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     Q      43     Q      43      6    9   23     4    5    7    8    9   14   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     K      44     K      44      6    9   23     4    4    7    7    9   10   15   16   22   27   31   36   42   53   58   65   69   72   75   80 
LCS_GDT     F      45     F      45      6    9   23     4    4    7    7   10   11   15   19   25   29   35   43   48   53   58   65   69   72   75   80 
LCS_GDT     V      46     V      46      4    6   23     3    3    4    7    9    9   14   17   23   29   31   37   48   53   58   65   69   72   75   80 
LCS_GDT     T      47     T      47      4    6   23     3    3    5    7    9    9   10   15   22   29   31   37   47   53   57   65   69   72   75   80 
LCS_GDT     D      48     D      48      4    6   23     3    4    6    9   11   13   17   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     G      49     G      49      4    9   23     3    5    7   10   11   14   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     D      50     D      50      3    9   23     3    3    4    7    9   10   12   18   23   29   31   37   42   53   57   65   69   72   75   80 
LCS_GDT     S      51     S      51      7    9   23     6    6    8   10   10   10   12   13   16   29   31   36   42   47   53   65   69   72   75   80 
LCS_GDT     W      52     W      52      7    9   23     6    6    8   10   10   11   15   21   26   30   37   43   48   53   58   65   69   72   75   80 
LCS_GDT     N      53     N      53      7    9   23     6    6    8   10   10   11   16   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     S      54     S      54      7    9   23     6    6    8   10   10   11   12   13   14   21   25   31   38   43   51   65   69   72   75   80 
LCS_GDT     M      55     M      55      7    9   23     6    6    8   10   10   11   14   18   23   29   33   39   48   53   58   65   69   72   75   80 
LCS_GDT     I      56     I      56      7    9   23     6    6    8   10   11   14   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     S      57     S      57      7    9   23     3    4    7   10   10   11   12   18   24   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     R      58     R      58      4    8   23     3    4    5    6    7   10   16   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     I      59     I      59      4    6   23     3    4    5    6    8   14   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     P      60     P      60      4    8   23     3    4    5    6    8   11   15   20   24   30   38   43   47   52   58   65   69   72   75   80 
LCS_GDT     A      61     A      61      3    8   23     3    3    5    7    7    9   11   15   19   22   28   32   39   43   48   55   63   67   75   80 
LCS_GDT     S      62     S      62      3    8   23     3    3    5    6    7    9   10   11   14   15   21   23   26   34   40   51   58   63   68   77 
LCS_GDT     G      63     G      63      4    8   23     3    4    5    7    7    9   10   11   14   16   22   27   37   44   48   54   63   69   75   80 
LCS_GDT     R      64     R      64      4    8   23     3    4    5    7    7    9   10   11   13   16   22   29   37   44   48   54   63   69   75   80 
LCS_GDT     H      65     H      65      4    8   21     3    4    5    7    7    9   12   16   21   26   30   35   40   50   57   62   69   72   75   80 
LCS_GDT     P      66     P      66      4    8   20     3    4    5    7    7    9   11   15   16   23   30   35   40   45   53   61   66   72   75   80 
LCS_GDT     L      67     L      67      3    8   20     3    4    5    7    7    9   10   11   13   16   22   25   34   42   48   60   63   69   75   80 
LCS_GDT     H      68     H      68      3    6   20     3    3    4    5    7   10   12   16   21   24   31   35   46   51   58   65   69   72   75   80 
LCS_GDT     Y      69     Y      69      4    5   20     3    3    4    5    6    9   14   18   24   29   31   37   42   53   58   65   69   72   75   80 
LCS_GDT     E      70     E      70      4    5   18     3    3    4    5    9   11   15   16   23   29   31   36   42   48   55   65   69   72   75   80 
LCS_GDT     L      71     L      71      4    5   18     3    3    6    9   10   11   15   21   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     A      72     A      72      4    5   16     3    3    5    8    9   12   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     H      73     H      73      3    5   14     3    3    5    8   11   14   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     L      74     L      74      4    4   17     3    3    5    6    7   11   12   16   25   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     I      75     I      75      4    5   17     3    3    5    6    7    9   11   16   23   27   33   37   47   53   58   65   69   72   75   80 
LCS_GDT     T      76     T      76      4    5   17     3    5    6    7    8   10   13   16   18   22   32   43   48   53   58   65   69   72   75   80 
LCS_GDT     V      77     V      77      5    5   25     3    4    5    6    8    9   13   17   21   27   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     P      78     P      78      5    5   25     3    4    5    5    7    9   13   16   18   20   25   30   35   42   47   54   64   70   75   80 
LCS_GDT     D      79     D      79      5    5   25     3    4    5    5    5    9   11   15   17   20   25   30   39   43   49   55   63   68   74   80 
LCS_GDT     A      80     A      80      5    5   25     3    4    5    5    6    9   11   15   17   20   24   28   32   36   42   49   57   60   66   72 
LCS_GDT     S      81     S      81      5    5   25     3    4    5    5    5    9   11   12   15   20   24   28   31   36   39   44   47   50   60   67 
LCS_GDT     S      82     S      82      5    6   25     4    5    5    6    7    9   11   12   17   22   24   28   31   36   39   44   50   54   61   68 
LCS_GDT     R      83     R      83      5    6   25     4    5    5    6    7    9   10   12   14   18   20   24   28   31   34   38   46   49   54   61 
LCS_GDT     G      84     G      84      5    6   25     4    5    5    6    7    7   10   11   13   18   20   26   31   34   34   35   37   42   47   55 
LCS_GDT     N      85     N      85      5    6   25     4    5    5    6    7    9   11   12   16   19   22   26   31   34   36   44   47   52   60   67 
LCS_GDT     T      86     T      86      5    6   25     3    5    5    6    9   15   16   17   20   23   25   28   35   42   47   52   59   65   71   78 
LCS_GDT     P      87     P      87      4    6   25     3    4    5    6    7   11   16   18   19   23   27   34   39   43   49   55   63   67   73   80 
LCS_GDT     T      88     T      88      3   13   25     3    3    5    5    7    7   12   15   17   21   27   34   38   43   49   54   63   67   73   80 
LCS_GDT     N      89     N      89     12   13   25     4    9   11   13   15   16   17   18   20   23   27   34   39   43   49   55   63   67   75   80 
LCS_GDT     A      90     A      90     12   13   25     7    9   12   13   15   16   17   18   24   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     H      91     H      91     12   13   25     7    9   12   13   15   16   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     S      92     S      92     12   13   25     7    9   12   13   15   16   17   18   20   23   25   35   40   44   57   65   69   72   75   80 
LCS_GDT     I      93     I      93     12   13   25     6    9   12   13   15   16   17   18   20   23   28   39   48   53   58   65   69   72   75   80 
LCS_GDT     Y      94     Y      94     12   13   25     7    9   12   13   15   16   17   18   24   29   36   43   48   53   58   65   69   72   75   80 
LCS_GDT     K      95     K      95     12   13   25     7    9   12   13   15   16   17   18   20   23   28   33   42   45   48   54   63   65   73   77 
LCS_GDT     E      96     E      96     12   13   25     7    9   12   13   15   16   17   18   20   23   25   27   31   35   39   42   50   52   67   73 
LCS_GDT     L      97     L      97     12   13   25     7    9   12   13   15   16   17   18   20   23   25   32   35   40   44   48   58   65   70   75 
LCS_GDT     K      98     K      98     12   13   25     4    9   12   13   15   16   17   18   20   23   25   27   31   36   39   44   55   58   66   68 
LCS_GDT     P      99     P      99     12   13   25     4    7   12   13   15   16   17   18   20   23   25   27   31   34   38   42   46   49   53   55 
LCS_GDT     I     100     I     100     12   13   25     4    9   12   13   15   16   17   18   20   23   25   27   31   34   39   42   46   50   53   56 
LCS_GDT     N     101     N     101      5   13   25     3    4    6   10   12   16   17   18   20   23   25   28   31   34   39   42   46   50   53   56 
LCS_GDT     Y     102     Y     102      3    7   24     3    4    4    8   11   14   15   18   19   21   24   28   31   36   39   42   46   50   53   56 
LCS_GDT     P     103     P     103      3    8   24     3    3    5    6    8   10   15   17   19   20   23   25   27   33   38   42   46   50   53   55 
LCS_GDT     E     104     E     104      5    8   33     3    4    6    7    8    9   15   18   19   20   25   29   32   36   38   42   46   50   55   58 
LCS_GDT     D     105     D     105      5    8   35     3    5    6    7    8   10   15   18   19   21   25   30   33   36   38   42   46   50   55   56 
LCS_GDT     T     106     T     106      5   11   36     3    5    6    8   11   14   15   18   19   26   28   31   34   37   38   42   46   50   56   64 
LCS_GDT     K     107     K     107      5   11   36     3    5    6    8   11   14   15   18   22   27   29   34   37   41   45   46   51   64   69   78 
LCS_GDT     N     108     N     108      7   11   36     3    5    7    9   11   14   15   18   22   27   29   34   38   42   48   60   64   69   74   80 
LCS_GDT     V     109     V     109      7   11   36     3    5    7    9   11   14   15   18   22   27   29   34   38   42   51   60   64   69   74   80 
LCS_GDT     H     110     H     110      7   11   36     3    5    7    9   11   14   15   18   22   27   29   34   38   42   51   60   64   69   74   80 
LCS_GDT     F     111     F     111      7   11   36     3    5    7    9   11   14   15   18   22   27   29   34   38   43   51   60   64   70   75   80 
LCS_GDT     V     112     V     112      7   11   36     3    4    7    9   11   14   15   18   22   27   29   34   38   42   45   59   63   69   72   80 
LCS_GDT     L     113     L     113      7   11   36     3    5    7    9   11   14   15   18   22   27   31   35   42   47   57   65   69   72   75   80 
LCS_GDT     F     114     F     114      7   11   40     3    5    7    9   11   14   15   18   22   29   31   36   42   47   53   65   69   72   75   80 
LCS_GDT     A     115     A     115      3   11   40     3    3    5    9   11   14   15   18   23   29   31   36   42   47   57   65   69   72   75   79 
LCS_GDT     E     116     E     116      3   11   40     3    3    4    5   11   14   15   19   24   29   34   43   48   53   58   65   69   72   75   80 
LCS_GDT     Y     117     Y     117      3   16   40     3    3    5    5   11   14   17   17   22   27   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     P     118     P     118     14   16   40     3    3    9   13   15   16   17   17   22   28   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     D     119     D     119     14   16   40     6   12   14   14   15   16   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     V     120     V     120     14   16   40     5   12   14   14   15   16   17   18   24   30   38   43   47   52   58   65   69   72   75   80 
LCS_GDT     L     121     L     121     14   16   40     9   12   14   14   15   16   17   17   20   27   33   37   40   49   57   62   67   72   75   80 
LCS_GDT     S     122     S     122     14   16   40     9   12   14   14   15   16   17   18   25   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     H     123     H     123     14   16   40     9   12   14   14   15   16   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     V     124     V     124     14   16   40     9   12   14   14   15   16   17   18   23   27   35   38   44   51   58   64   69   72   75   80 
LCS_GDT     A     125     A     125     14   16   40     9   12   14   14   15   16   17   18   23   27   35   41   47   51   58   65   69   72   75   80 
LCS_GDT     A     126     A     126     14   16   40     9   12   14   14   15   16   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     I     127     I     127     14   16   40     9   12   14   14   15   16   17   18   24   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     A     128     A     128     14   16   40     9   12   14   14   15   16   17   18   23   27   35   38   42   51   58   64   69   72   75   80 
LCS_GDT     R     129     R     129     14   16   40     9   12   14   14   15   16   17   18   23   28   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     T     130     T     130     14   16   40     3   12   14   14   15   16   17   19   25   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     F     131     F     131     14   16   40     3   12   14   14   15   16   17   18   23   27   35   38   42   51   57   64   67   72   75   80 
LCS_GDT     C     132     C     132     14   16   40     3    4   14   14   15   16   17   18   23   27   33   38   42   51   58   64   69   72   75   80 
LCS_GDT     K     133     K     133      3   16   40     3    4    4    4    7   12   15   18   23   27   35   38   42   51   55   64   67   71   75   80 
LCS_GDT     F     134     F     134      3    4   40     3    3    5    8   10   10   11   16   22   27   33   37   39   42   45   47   48   50   66   72 
LCS_GDT     S     135     S     135      3    5   40     0    3    3    4   10   10   10   15   19   25   33   37   39   42   45   50   57   62   67   76 
LCS_GDT     M     136     M     136      4    5   40     1    3    4    5   10   10   11   16   20   27   33   37   39   42   45   52   58   62   72   76 
LCS_GDT     K     137     K     137      4    5   40     3    3    4    5    6    7   11   16   20   27   33   37   39   51   55   64   67   72   75   78 
LCS_GDT     T     138     T     138      4    6   40     3    3    4    5    6    7    7    9    9   17   22   29   37   39   41   47   48   59   65   69 
LCS_GDT     S     139     S     139      4    6   40     3    3    4    5    6    7   11   16   20   27   33   37   41   51   58   65   69   72   75   80 
LCS_GDT     G     140     G     140      3    6   40     3    3    4    5    6    9   14   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     I     141     I     141      4    6   40     3    3    4    5    6   10   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     R     142     R     142      4    6   40     3    4    4    6    8   13   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     E     143     E     143      4    6   40     3    4    4    6   11   14   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     L     144     L     144      4    5   40     3    4    4    6   11   14   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     N     145     N     145      5    9   40     3    4    6    9   10   11   15   16   23   29   35   42   48   53   58   65   69   72   75   80 
LCS_GDT     V     146     V     146      5    9   40     4    4    6    9   11   13   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     N     147     N     147      5    9   40     4    5    6    9   12   16   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     I     148     I     148      5    9   40     4    5    6   12   15   16   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     D     149     D     149      5    9   40     4    5    6    9   11   14   18   22   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     V     150     V     150      4    9   40     3    4    6    9   11   14   15   20   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     V     151     V     151      4    9   40     3    4    4    6   11   14   15   18   23   29   33   39   48   53   58   65   69   72   75   80 
LCS_GDT     C     152     C     152      4    9   40     3    3    6    8   11   14   15   19   24   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     D     153     D     153      4    9   40     3    3    4    9   11   14   15   19   24   30   37   43   48   53   58   65   69   72   75   80 
LCS_GDT     K     154     K     154      4    7   40     3    4    5    8    9   12   15   20   26   30   38   43   48   53   58   65   69   72   75   80 
LCS_GDT     L     155     L     155      3    5   40     0    3    3    5    6    6    7   12   17   23   30   35   40   44   58   61   66   72   75   80 
LCS_AVERAGE  LCS_A:   9.16  (   3.99    5.94   17.56 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     12     14     14     15     16     18     22     26     30     38     43     48     53     58     65     69     72     75     80 
GDT PERCENT_CA   5.84   7.79   9.09   9.09   9.74  10.39  11.69  14.29  16.88  19.48  24.68  27.92  31.17  34.42  37.66  42.21  44.81  46.75  48.70  51.95
GDT RMS_LOCAL    0.18   0.51   0.77   0.77   1.05   1.30   2.73   3.02   3.36   3.58   4.15   4.41   4.72   4.98   5.25   5.60   5.81   5.98   6.16   6.66
GDT RMS_ALL_CA  20.81  21.30  21.47  21.47  21.54  20.40  16.15  16.19  16.38  16.07  16.36  16.52  16.68  16.77  16.63  16.78  16.74  16.69  16.65  16.44

#      Molecule1      Molecule2       DISTANCE
LGA    T       2      T       2         30.809
LGA    Q       3      Q       3         25.635
LGA    V       4      V       4         21.220
LGA    L       5      L       5         19.141
LGA    V       6      V       6         16.445
LGA    R       7      R       7         19.465
LGA    N       8      N       8         20.935
LGA    G       9      G       9         26.625
LGA    I      10      I      10         29.828
LGA    Q      11      Q      11         35.952
LGA    A      12      A      12         41.655
LGA    V      13      V      13         41.349
LGA    G      14      G      14         43.060
LGA    D      15      D      15         45.297
LGA    G      16      G      16         43.486
LGA    L      17      L      17         38.683
LGA    T      18      T      18         33.497
LGA    S      19      S      19         28.355
LGA    L      20      L      20         24.108
LGA    I      21      I      21         19.305
LGA    I      22      I      22         14.884
LGA    V      23      V      23         12.777
LGA    G      24      G      24         13.191
LGA    K      25      K      25         14.787
LGA    K      26      K      26         13.815
LGA    S      27      S      27         18.257
LGA    V      28      V      28         20.942
LGA    L      29      L      29         21.682
LGA    K      30      K      30         20.004
LGA    N      31      N      31         23.221
LGA    V      32      V      32         20.484
LGA    T      33      T      33         22.455
LGA    F      34      F      34         20.004
LGA    E      35      E      35         24.862
LGA    G      36      G      36         27.667
LGA    K      37      K      37         24.192
LGA    F      38      F      38         20.672
LGA    K      39      K      39         14.952
LGA    E      40      E      40         14.386
LGA    V      41      V      41         11.786
LGA    A      42      A      42          6.416
LGA    Q      43      Q      43          3.870
LGA    K      44      K      44          6.614
LGA    F      45      F      45          4.811
LGA    V      46      V      46          6.986
LGA    T      47      T      47          7.622
LGA    D      48      D      48          3.570
LGA    G      49      G      49          1.891
LGA    D      50      D      50          8.985
LGA    S      51      S      51          9.810
LGA    W      52      W      52          4.780
LGA    N      53      N      53          3.956
LGA    S      54      S      54          9.443
LGA    M      55      M      55          7.602
LGA    I      56      I      56          1.404
LGA    S      57      S      57          4.981
LGA    R      58      R      58          3.828
LGA    I      59      I      59          3.092
LGA    P      60      P      60          5.118
LGA    A      61      A      61         11.105
LGA    S      62      S      62         13.229
LGA    G      63      G      63         10.212
LGA    R      64      R      64          9.944
LGA    H      65      H      65          7.545
LGA    P      66      P      66          8.588
LGA    L      67      L      67         10.714
LGA    H      68      H      68          7.540
LGA    Y      69      Y      69          7.740
LGA    E      70      E      70          8.401
LGA    L      71      L      71          4.430
LGA    A      72      A      72          3.807
LGA    H      73      H      73          2.721
LGA    L      74      L      74          5.076
LGA    I      75      I      75          7.375
LGA    T      76      T      76          6.750
LGA    V      77      V      77          6.417
LGA    P      78      P      78         10.246
LGA    D      79      D      79         10.982
LGA    A      80      A      80         15.242
LGA    S      81      S      81         18.873
LGA    S      82      S      82         17.967
LGA    R      83      R      83         21.252
LGA    G      84      G      84         22.691
LGA    N      85      N      85         16.371
LGA    T      86      T      86         12.155
LGA    P      87      P      87         11.364
LGA    T      88      T      88         11.734
LGA    N      89      N      89         10.472
LGA    A      90      A      90          5.604
LGA    H      91      H      91          2.336
LGA    S      92      S      92          8.558
LGA    I      93      I      93          7.230
LGA    Y      94      Y      94          6.119
LGA    K      95      K      95         11.530
LGA    E      96      E      96         14.245
LGA    L      97      L      97         12.259
LGA    K      98      K      98         14.652
LGA    P      99      P      99         18.955
LGA    I     100      I     100         18.811
LGA    N     101      N     101         21.643
LGA    Y     102      Y     102         23.274
LGA    P     103      P     103         22.920
LGA    E     104      E     104         22.151
LGA    D     105      D     105         23.366
LGA    T     106      T     106         18.625
LGA    K     107      K     107         16.243
LGA    N     108      N     108         13.007
LGA    V     109      V     109         11.562
LGA    H     110      H     110         11.733
LGA    F     111      F     111          9.967
LGA    V     112      V     112         11.816
LGA    L     113      L     113          8.907
LGA    F     114      F     114         10.020
LGA    A     115      A     115         10.575
LGA    E     116      E     116          8.430
LGA    Y     117      Y     117          7.805
LGA    P     118      P     118          7.333
LGA    D     119      D     119          2.766
LGA    V     120      V     120          5.499
LGA    L     121      L     121          8.339
LGA    S     122      S     122          5.713
LGA    H     123      H     123          3.072
LGA    V     124      V     124          7.068
LGA    A     125      A     125          7.283
LGA    A     126      A     126          3.383
LGA    I     127      I     127          5.403
LGA    A     128      A     128          8.257
LGA    R     129      R     129          5.977
LGA    T     130      T     130          4.675
LGA    F     131      F     131          9.327
LGA    C     132      C     132          8.535
LGA    K     133      K     133         10.683
LGA    F     134      F     134         14.818
LGA    S     135      S     135         14.206
LGA    M     136      M     136         14.044
LGA    K     137      K     137         10.522
LGA    T     138      T     138         13.621
LGA    S     139      S     139          7.769
LGA    G     140      G     140          3.835
LGA    I     141      I     141          3.977
LGA    R     142      R     142          3.723
LGA    E     143      E     143          2.168
LGA    L     144      L     144          2.282
LGA    N     145      N     145          6.337
LGA    V     146      V     146          3.198
LGA    N     147      N     147          2.255
LGA    I     148      I     148          0.802
LGA    D     149      D     149          1.477
LGA    V     150      V     150          5.137
LGA    V     151      V     151          7.859
LGA    C     152      C     152          7.372
LGA    D     153      D     153          7.972
LGA    K     154      K     154          6.584
LGA    L     155      L     155          8.240

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  154  154    4.0     22    3.02    18.344    14.377     0.706

LGA_LOCAL      RMSD =  3.016  Number of atoms =   22  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.164  Number of atoms =  154 
Std_ALL_ATOMS  RMSD = 14.963  (standard rmsd on all 154 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.096120 * X  +  -0.591604 * Y  +  -0.800478 * Z  +  15.666107
  Y_new =   0.307977 * X  +   0.747062 * Y  +  -0.589108 * Z  +  30.194586
  Z_new =   0.946526 * X  +  -0.303154 * Y  +   0.110393 * Z  +  40.145077 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.221574    1.920018  [ DEG:   -69.9911    110.0089 ]
  Theta =  -1.242292   -1.899301  [ DEG:   -71.1781   -108.8219 ]
  Phi   =   1.873319   -1.268274  [ DEG:   107.3333    -72.6667 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0318TS393_5-D1                               
REMARK     2: T0318_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0318TS393_5-D1.T0318_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  154  154   4.0   22   3.02  14.377    14.96
REMARK  ---------------------------------------------------------- 
MOLECULE T0318TS393_5-D1
PFRMAT TS
TARGET T0318
MODEL 5
PARENT N/A
ATOM      2  CA  THR     2      14.590  27.172  20.281  1.00 25.00           C
ATOM      3  CA  GLN     3      17.489  29.222  21.541  1.00 25.00           C
ATOM      4  CA  VAL     4      20.259  30.202  23.960  1.00 25.00           C
ATOM      5  CA  LEU     5      19.732  33.673  25.426  1.00 25.00           C
ATOM      6  CA  VAL     6      19.908  36.971  27.214  1.00 25.00           C
ATOM      7  CA  ARG     7      16.389  37.559  25.779  1.00 25.00           C
ATOM      8  CA  ASN     8      12.990  37.019  24.099  1.00 25.00           C
ATOM      9  CA  GLY     9       9.817  39.196  24.077  1.00 25.00           C
ATOM     10  CA  ILE    10       9.877  41.899  26.712  1.00 25.00           C
ATOM     11  CA  GLN    11       6.356  43.453  26.421  1.00 25.00           C
ATOM     12  CA  ALA    12       3.657  45.562  28.145  1.00 25.00           C
ATOM     13  CA  VAL    13       4.288  48.326  30.597  1.00 25.00           C
ATOM     14  CA  GLY    14       6.581  50.826  32.411  1.00 25.00           C
ATOM     15  CA  ASP    15       8.524  50.922  35.678  1.00 25.00           C
ATOM     16  CA  GLY    16      10.857  50.981  38.684  1.00 25.00           C
ATOM     17  CA  LEU    17      14.086  49.144  39.170  1.00 25.00           C
ATOM     18  CA  THR    18      17.056  46.811  39.428  1.00 25.00           C
ATOM     19  CA  SER    19      19.202  43.662  39.037  1.00 25.00           C
ATOM     20  CA  LEU    20      22.119  41.195  38.969  1.00 25.00           C
ATOM     21  CA  ILE    21      25.101  38.745  39.097  1.00 25.00           C
ATOM     22  CA  ILE    22      28.125  36.577  38.267  1.00 25.00           C
ATOM     23  CA  VAL    23      31.780  36.358  39.306  1.00 25.00           C
ATOM     24  CA  GLY    24      34.123  36.873  42.231  1.00 25.00           C
ATOM     25  CA  LYS    25      36.173  38.428  45.052  1.00 25.00           C
ATOM     26  CA  LYS    26      39.417  40.258  45.747  1.00 25.00           C
ATOM     27  CA  SER    27      42.879  39.934  47.331  1.00 25.00           C
ATOM     28  CA  VAL    28      43.629  43.332  45.680  1.00 25.00           C
ATOM     29  CA  LEU    29      46.132  45.424  47.704  1.00 25.00           C
ATOM     30  CA  LYS    30      48.441  42.400  47.958  1.00 25.00           C
ATOM     31  CA  ASN    31      51.561  42.096  45.735  1.00 25.00           C
ATOM     32  CA  VAL    32      50.040  43.165  42.416  1.00 25.00           C
ATOM     33  CA  THR    33      52.791  45.786  42.124  1.00 25.00           C
ATOM     34  CA  PHE    34      50.518  48.390  40.606  1.00 25.00           C
ATOM     35  CA  GLU    35      52.470  51.243  39.118  1.00 25.00           C
ATOM     36  CA  GLY    36      51.411  53.682  36.418  1.00 25.00           C
ATOM     37  CA  LYS    37      51.966  51.300  33.547  1.00 25.00           C
ATOM     38  CA  PHE    38      48.473  52.259  32.260  1.00 25.00           C
ATOM     39  CA  LYS    39      47.900  48.948  30.404  1.00 25.00           C
ATOM     40  CA  GLU    40      47.393  45.885  32.646  1.00 25.00           C
ATOM     41  CA  VAL    41      43.756  45.603  31.481  1.00 25.00           C
ATOM     42  CA  ALA    42      44.884  45.818  27.827  1.00 25.00           C
ATOM     43  CA  GLN    43      47.486  43.078  28.444  1.00 25.00           C
ATOM     44  CA  LYS    44      44.812  40.868  30.067  1.00 25.00           C
ATOM     45  CA  PHE    45      42.495  41.430  27.070  1.00 25.00           C
ATOM     46  CA  VAL    46      42.011  37.702  26.479  1.00 25.00           C
ATOM     47  CA  THR    47      45.718  36.735  26.401  1.00 25.00           C
ATOM     48  CA  ASP    48      48.239  35.835  29.112  1.00 25.00           C
ATOM     49  CA  GLY    49      46.042  34.557  31.905  1.00 25.00           C
ATOM     50  CA  ASP    50      44.053  32.162  29.635  1.00 25.00           C
ATOM     51  CA  SER    51      41.007  34.360  30.196  1.00 25.00           C
ATOM     52  CA  TRP    52      40.550  34.381  33.998  1.00 25.00           C
ATOM     53  CA  ASN    53      42.082  37.886  34.187  1.00 25.00           C
ATOM     54  CA  SER    54      39.724  39.091  31.420  1.00 25.00           C
ATOM     55  CA  MET    55      36.728  37.612  33.293  1.00 25.00           C
ATOM     56  CA  ILE    56      38.170  38.659  36.658  1.00 25.00           C
ATOM     57  CA  SER    57      37.660  42.111  38.294  1.00 25.00           C
ATOM     58  CA  ARG    58      34.629  41.935  40.598  1.00 25.00           C
ATOM     59  CA  ILE    59      34.039  45.244  42.343  1.00 25.00           C
ATOM     60  CA  PRO    60      32.545  48.718  42.096  1.00 25.00           C
ATOM     61  CA  ALA    61      32.424  51.084  45.056  1.00 25.00           C
ATOM     62  CA  SER    62      34.800  53.656  43.626  1.00 25.00           C
ATOM     63  CA  GLY    63      31.644  54.910  41.892  1.00 25.00           C
ATOM     64  CA  ARG    64      33.508  56.375  38.953  1.00 25.00           C
ATOM     65  CA  HIS    65      33.263  55.115  35.322  1.00 25.00           C
ATOM     66  CA  PRO    66      33.204  56.327  31.731  1.00 25.00           C
ATOM     67  CA  LEU    67      34.159  54.759  28.355  1.00 25.00           C
ATOM     68  CA  HIS    68      37.808  54.823  29.518  1.00 25.00           C
ATOM     69  CA  TYR    69      37.115  51.932  31.932  1.00 25.00           C
ATOM     70  CA  GLU    70      35.470  49.937  29.107  1.00 25.00           C
ATOM     71  CA  LEU    71      38.496  50.586  26.851  1.00 25.00           C
ATOM     72  CA  ALA    72      40.853  49.421  29.636  1.00 25.00           C
ATOM     73  CA  HIS    73      38.770  46.241  30.102  1.00 25.00           C
ATOM     74  CA  LEU    74      38.898  45.576  26.332  1.00 25.00           C
ATOM     75  CA  ILE    75      36.823  42.425  25.590  1.00 25.00           C
ATOM     76  CA  THR    76      34.336  44.039  27.921  1.00 25.00           C
ATOM     77  CA  VAL    77      32.594  41.340  30.012  1.00 25.00           C
ATOM     78  CA  PRO    78      34.306  43.130  32.855  1.00 25.00           C
ATOM     79  CA  ASP    79      31.237  44.857  34.248  1.00 25.00           C
ATOM     80  CA  ALA    80      33.184  46.421  37.139  1.00 25.00           C
ATOM     81  CA  SER    81      32.804  50.121  36.199  1.00 25.00           C
ATOM     82  CA  SER    82      29.077  49.244  36.277  1.00 25.00           C
ATOM     83  CA  ARG    83      26.999  51.774  34.333  1.00 25.00           C
ATOM     84  CA  GLY    84      29.713  51.640  31.646  1.00 25.00           C
ATOM     85  CA  ASN    85      27.909  48.401  30.568  1.00 25.00           C
ATOM     86  CA  THR    86      25.496  45.483  31.073  1.00 25.00           C
ATOM     87  CA  PRO    87      22.184  47.176  31.958  1.00 25.00           C
ATOM     88  CA  THR    88      19.543  49.516  30.469  1.00 25.00           C
ATOM     89  CA  ASN    89      22.191  51.100  28.200  1.00 25.00           C
ATOM     90  CA  ALA    90      23.324  47.626  27.055  1.00 25.00           C
ATOM     91  CA  HIS    91      19.696  46.664  26.299  1.00 25.00           C
ATOM     92  CA  SER    92      19.234  49.887  24.285  1.00 25.00           C
ATOM     93  CA  ILE    93      22.436  49.146  22.318  1.00 25.00           C
ATOM     94  CA  TYR    94      21.197  45.595  21.594  1.00 25.00           C
ATOM     95  CA  LYS    95      17.838  46.986  20.390  1.00 25.00           C
ATOM     96  CA  GLU    96      19.656  49.469  18.110  1.00 25.00           C
ATOM     97  CA  LEU    97      21.795  46.631  16.683  1.00 25.00           C
ATOM     98  CA  LYS    98      18.647  44.549  16.036  1.00 25.00           C
ATOM     99  CA  PRO    99      17.013  47.526  14.266  1.00 25.00           C
ATOM    100  CA  ILE   100      20.141  47.990  12.106  1.00 25.00           C
ATOM    101  CA  ASN   101      18.113  49.887   9.506  1.00 25.00           C
ATOM    102  CA  TYR   102      15.734  52.118  11.463  1.00 25.00           C
ATOM    103  CA  PRO   103      18.340  52.488  14.167  1.00 25.00           C
ATOM    104  CA  GLU   104      18.125  56.204  13.635  1.00 25.00           C
ATOM    105  CA  ASP   105      19.542  55.797  10.077  1.00 25.00           C
ATOM    106  CA  THR   106      23.008  54.421  10.571  1.00 25.00           C
ATOM    107  CA  LYS   107      25.208  53.753   7.547  1.00 25.00           C
ATOM    108  CA  ASN   108      27.404  51.057   9.126  1.00 25.00           C
ATOM    109  CA  VAL   109      26.472  49.756  12.501  1.00 25.00           C
ATOM    110  CA  HIS   110      27.468  46.144  12.000  1.00 25.00           C
ATOM    111  CA  PHE   111      26.326  44.798  15.345  1.00 25.00           C
ATOM    112  CA  VAL   112      27.233  41.392  13.835  1.00 25.00           C
ATOM    113  CA  LEU   113      25.926  39.814  17.025  1.00 25.00           C
ATOM    114  CA  PHE   114      26.712  36.110  17.389  1.00 25.00           C
ATOM    115  CA  ALA   115      24.633  33.219  16.217  1.00 25.00           C
ATOM    116  CA  GLU   116      26.667  31.002  18.465  1.00 25.00           C
ATOM    117  CA  TYR   117      29.581  32.836  20.078  1.00 25.00           C
ATOM    118  CA  PRO   118      26.341  33.606  21.911  1.00 25.00           C
ATOM    119  CA  ASP   119      24.293  35.595  24.465  1.00 25.00           C
ATOM    120  CA  VAL   120      27.514  36.730  26.198  1.00 25.00           C
ATOM    121  CA  LEU   121      28.972  37.821  22.829  1.00 25.00           C
ATOM    122  CA  SER   122      25.774  39.781  22.053  1.00 25.00           C
ATOM    123  CA  HIS   123      25.956  41.483  25.478  1.00 25.00           C
ATOM    124  CA  VAL   124      29.620  42.406  24.852  1.00 25.00           C
ATOM    125  CA  ALA   125      28.694  43.858  21.431  1.00 25.00           C
ATOM    126  CA  ALA   126      25.881  45.905  23.032  1.00 25.00           C
ATOM    127  CA  ILE   127      28.313  47.217  25.684  1.00 25.00           C
ATOM    128  CA  ALA   128      30.811  48.189  22.949  1.00 25.00           C
ATOM    129  CA  ARG   129      28.041  50.013  21.034  1.00 25.00           C
ATOM    130  CA  THR   130      27.035  51.883  24.221  1.00 25.00           C
ATOM    131  CA  PHE   131      30.683  52.883  24.816  1.00 25.00           C
ATOM    132  CA  CYS   132      30.952  54.141  21.209  1.00 25.00           C
ATOM    133  CA  LYS   133      27.740  56.178  21.654  1.00 25.00           C
ATOM    134  CA  PHE   134      29.116  57.687  24.893  1.00 25.00           C
ATOM    135  CA  SER   135      25.443  58.543  25.469  1.00 25.00           C
ATOM    136  CA  MET   136      25.961  61.628  23.405  1.00 25.00           C
ATOM    137  CA  LYS   137      29.139  62.280  21.437  1.00 25.00           C
ATOM    138  CA  THR   138      32.899  61.531  21.197  1.00 25.00           C
ATOM    139  CA  SER   139      33.138  62.366  17.450  1.00 25.00           C
ATOM    140  CA  GLY   140      34.467  60.181  14.635  1.00 25.00           C
ATOM    141  CA  ILE   141      35.174  57.450  12.090  1.00 25.00           C
ATOM    142  CA  ARG   142      36.896  54.215  11.181  1.00 25.00           C
ATOM    143  CA  GLU   143      34.103  52.017   9.848  1.00 25.00           C
ATOM    144  CA  LEU   144      34.101  49.332  12.540  1.00 25.00           C
ATOM    145  CA  ASN   145      31.879  50.377  15.428  1.00 25.00           C
ATOM    146  CA  VAL   146      31.100  46.672  15.683  1.00 25.00           C
ATOM    147  CA  ASN   147      32.011  43.113  14.537  1.00 25.00           C
ATOM    148  CA  ILE   148      31.437  41.165  17.753  1.00 25.00           C
ATOM    149  CA  ASP   149      33.588  38.109  16.991  1.00 25.00           C
ATOM    150  CA  VAL   150      31.272  35.863  15.011  1.00 25.00           C
ATOM    151  CA  VAL   151      29.696  32.372  14.932  1.00 25.00           C
ATOM    152  CA  CYS   152      32.881  30.686  16.150  1.00 25.00           C
ATOM    153  CA  ASP   153      31.596  27.540  14.467  1.00 25.00           C
ATOM    154  CA  LYS   154      31.554  24.541  16.704  1.00 25.00           C
ATOM    155  CA  LEU   155      33.174  23.756  20.085  1.00 25.00           C
TER
END
