
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  154 (  154),  selected  154 , name T0318TS393_4-D1
# Molecule2: number of CA atoms  154 ( 1200),  selected  154 , name T0318_D1.pdb
# PARAMETERS: T0318TS393_4-D1.T0318_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44        90 - 133         4.96    25.50
  LCS_AVERAGE:     18.70

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       118 - 133         1.84    20.31
  LCS_AVERAGE:      6.02

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       118 - 131         0.91    19.71
  LONGEST_CONTINUOUS_SEGMENT:    14       119 - 132         0.77    19.70
  LCS_AVERAGE:      4.00

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  154
LCS_GDT     T       2     T       2      4    6   12     0    3    5    6    6    8   10   11   13   15   19   21   23   24   26   27   33   39   42   46 
LCS_GDT     Q       3     Q       3      4    6   12     3    3    5    6    7    9   10   11   14   15   19   21   23   26   32   35   38   43   46   54 
LCS_GDT     V       4     V       4      4    6   12     3    4    5    6    7    9   10   11   13   16   21   22   25   28   32   39   43   49   56   59 
LCS_GDT     L       5     L       5      4    6   12     3    4    5    6    7    9   11   15   18   20   23   29   33   37   43   46   51   53   59   61 
LCS_GDT     V       6     V       6      4    6   17     3    4    5    6    7    9   12   15   19   22   28   31   39   40   48   50   53   58   60   62 
LCS_GDT     R       7     R       7      4    6   17     3    4    5    6    7    9   14   15   19   22   25   31   35   40   44   46   50   53   57   61 
LCS_GDT     N       8     N       8      4    6   17     3    3    4    4    7    9   14   15   18   21   25   31   34   38   43   46   50   53   56   59 
LCS_GDT     G       9     G       9      4    6   17     3    3    4    5    6    8   10   12   14   18   24   27   32   36   43   46   50   53   56   59 
LCS_GDT     I      10     I      10      4    6   17     3    3    5    5    7    9   10   13   16   18   23   26   28   34   36   38   49   53   56   59 
LCS_GDT     Q      11     Q      11      4    6   17     3    3    5    5    7   10   12   13   16   18   21   23   25   29   34   37   40   44   48   57 
LCS_GDT     A      12     A      12      4    8   17     3    3    5    5    8   10   12   13   16   18   21   23   25   29   33   37   40   44   47   50 
LCS_GDT     V      13     V      13      5    8   17     3    3    5    7    8   10   12   13   16   18   21   23   25   29   33   37   40   44   47   50 
LCS_GDT     G      14     G      14      5    8   17     3    4    5    7    8   10   12   13   16   18   21   23   25   29   33   37   40   44   47   50 
LCS_GDT     D      15     D      15      5    8   17     3    4    5    7    8   10   12   13   16   18   21   23   25   29   33   37   40   44   47   50 
LCS_GDT     G      16     G      16      5    8   17     3    4    5    7    8   10   12   13   16   18   21   23   25   29   33   37   40   44   47   50 
LCS_GDT     L      17     L      17      5    8   17     3    4    5    7    8    9   12   13   16   18   21   23   25   29   33   37   40   44   47   50 
LCS_GDT     T      18     T      18      5    8   17     3    4    5    7    8    9   12   13   16   18   21   23   25   29   33   37   40   44   47   50 
LCS_GDT     S      19     S      19      5    8   17     3    4    5    7    8    9   12   13   16   18   21   23   25   28   33   37   40   44   47   50 
LCS_GDT     L      20     L      20      4    8   17     3    4    4    7    7    9   12   13   16   18   21   23   25   28   33   37   40   44   47   50 
LCS_GDT     I      21     I      21      4    8   17     3    4    5    7    7    9   10   12   14   17   17   21   25   28   33   37   40   44   47   52 
LCS_GDT     I      22     I      22      4    8   21     3    4    5    7    7    9    9   11   13   15   17   19   28   30   34   38   42   52   56   59 
LCS_GDT     V      23     V      23      4    8   21     3    3    4    7    7    8    9   11   12   15   23   26   28   30   34   39   46   52   56   59 
LCS_GDT     G      24     G      24      4    7   21     3    3    4    5    7    8    8   11   14   22   22   26   28   32   36   40   43   52   56   59 
LCS_GDT     K      25     K      25      4    7   21     3    3    4    5    6   10   13   15   18   22   22   24   28   32   36   39   43   49   53   58 
LCS_GDT     K      26     K      26      3    7   21     3    3    3    5    6    8    8   12   17   20   22   24   28   32   35   39   43   51   53   58 
LCS_GDT     S      27     S      27      3    7   21     3    3    3    5    8   10   13   15   18   22   22   24   26   29   34   38   42   46   51   58 
LCS_GDT     V      28     V      28      3    9   21     3    3    4    5    6    7   12   15   18   22   22   24   26   28   34   37   41   44   51   54 
LCS_GDT     L      29     L      29      8    9   21     3    5    8    9   10   10   13   15   18   22   22   24   26   28   34   37   39   43   45   50 
LCS_GDT     K      30     K      30      8    9   21     3    6    8    9   10   10   12   15   18   22   22   24   26   28   34   37   39   43   45   50 
LCS_GDT     N      31     N      31      8    9   21     3    6    8    9   10   10   13   15   18   22   22   24   26   28   30   37   39   43   45   50 
LCS_GDT     V      32     V      32      8    9   21     3    6    8    9   10   10   13   15   18   22   22   24   26   28   34   37   39   43   45   50 
LCS_GDT     T      33     T      33      8    9   21     3    6    8    9   10   10   13   15   18   22   22   24   26   28   34   37   39   43   45   53 
LCS_GDT     F      34     F      34      8    9   21     3    6    8    9   10   10   13   15   18   22   22   24   26   30   35   40   45   51   54   57 
LCS_GDT     E      35     E      35      8    9   21     3    5    8    9   10   10   13   15   18   22   22   24   27   33   36   42   45   51   54   57 
LCS_GDT     G      36     G      36      8    9   21     3    6    8    9   10   10   13   15   18   22   22   24   28   33   38   42   45   51   54   57 
LCS_GDT     K      37     K      37      3    9   21     3    3    4    4    7   10   12   15   17   20   22   24   26   30   36   42   45   48   54   57 
LCS_GDT     F      38     F      38      3    9   21     3    3    4    6    9   10   12   14   17   20   22   24   30   34   38   42   45   51   54   57 
LCS_GDT     K      39     K      39      6    9   21     4    5    7    8    9   10   13   14   17   22   23   26   32   36   39   42   46   51   54   57 
LCS_GDT     E      40     E      40      6    9   21     4    5    7    8   10   10   12   14   17   22   22   26   30   34   38   42   45   51   54   57 
LCS_GDT     V      41     V      41      6    9   25     4    5    7    9   10   10   12   15   18   22   22   26   30   34   38   42   46   51   54   57 
LCS_GDT     A      42     A      42      6    9   25     4    5    7    8    9   10   12   15   18   22   23   27   33   36   43   46   50   53   56   59 
LCS_GDT     Q      43     Q      43      6    9   25     4    5    7    8    9   10   12   15   18   20   24   27   33   36   43   46   50   53   56   59 
LCS_GDT     K      44     K      44      6    9   25     4    4    7    8    9   10   12   14   16   18   21   24   27   34   36   44   50   53   56   59 
LCS_GDT     F      45     F      45      6    9   25     4    4    7    8    9   10   12   15   17   19   24   27   32   36   43   46   50   53   56   59 
LCS_GDT     V      46     V      46      3    9   25     3    3    4    6    8   10   11   15   17   19   23   27   30   36   43   46   50   53   56   59 
LCS_GDT     T      47     T      47      3    9   25     3    4    6    7    9   10   12   15   17   19   23   26   28   34   43   46   50   53   56   59 
LCS_GDT     D      48     D      48      3    7   25     3    3    4    5    6    9   10   15   17   19   24   27   30   36   43   46   50   53   56   59 
LCS_GDT     G      49     G      49      3    7   25     0    3    4    5    6    7   10   15   17   19   24   27   33   36   43   46   50   53   56   59 
LCS_GDT     D      50     D      50      6    8   25     5    6    7    7    7    8   10   15   17   19   21   24   27   36   43   46   50   53   56   59 
LCS_GDT     S      51     S      51      6    8   25     5    6    7    7    7    9   11   13   15   18   21   24   27   31   33   36   42   53   56   59 
LCS_GDT     W      52     W      52      6    8   25     5    6    7    7    7    8    9   15   17   19   21   24   30   36   43   46   50   53   56   59 
LCS_GDT     N      53     N      53      6    8   25     5    6    7    7    7    8   10   15   17   19   24   27   33   36   43   46   50   53   56   59 
LCS_GDT     S      54     S      54      6    8   25     5    6    7    7    7    8   11   13   15   18   21   24   27   34   36   43   50   53   56   59 
LCS_GDT     M      55     M      55      6    8   25     5    6    7    7    7   10   11   13   15   18   21   24   27   34   43   46   50   53   56   59 
LCS_GDT     I      56     I      56      4    8   25     3    4    4    7    7   10   11   13   15   18   21   24   27   34   36   38   42   47   52   59 
LCS_GDT     S      57     S      57      4    8   25     3    4    4    5    7   10   11   13   15   18   21   22   27   34   36   38   42   45   48   54 
LCS_GDT     R      58     R      58      4    6   25     3    4    7    7    7   10   11   15   17   19   21   24   30   35   43   46   50   53   56   59 
LCS_GDT     I      59     I      59      4    6   25     3    4    5    5    7   10   11   15   18   22   22   27   33   36   43   46   50   53   56   59 
LCS_GDT     P      60     P      60      4    6   25     3    4    4    6    7   10   11   13   17   19   21   24   27   34   36   43   46   49   52   58 
LCS_GDT     A      61     A      61      4    6   25     3    4    4    5    6    8   11   12   13   17   20   22   27   31   32   35   39   43   51   58 
LCS_GDT     S      62     S      62      4    6   25     3    3    5    5    7   10   11   12   14   17   20   22   24   27   32   35   36   39   44   50 
LCS_GDT     G      63     G      63      4    6   25     3    3    5    5    7   10   11   13   15   17   21   22   27   31   32   35   39   42   46   58 
LCS_GDT     R      64     R      64      4    5   25     3    3    5    5    7   10   11   13   15   17   21   22   24   31   34   36   42   45   51   58 
LCS_GDT     H      65     H      65      4    5   25     3    4   11   14   16   17   20   22   24   28   30   33   35   38   43   46   50   53   56   59 
LCS_GDT     P      66     P      66      4    5   25     3    3    4   11   16   17   20   22   24   28   30   33   35   38   43   46   50   53   56   59 
LCS_GDT     L      67     L      67      4    5   20     3    4    4    4    8   11   14   20   23   25   30   33   35   38   43   46   50   53   56   59 
LCS_GDT     H      68     H      68      4    5   20     3    3    4    4    7    9   13   15   18   22   24   28   33   36   43   46   50   53   56   59 
LCS_GDT     Y      69     Y      69      4    5   20     3    3    4    4    5    6    9   11   14   20   24   27   33   36   43   46   50   53   56   59 
LCS_GDT     E      70     E      70      4    5   17     3    3    4    4    7    7    9   11   13   16   19   23   28   36   43   46   50   53   56   59 
LCS_GDT     L      71     L      71      4    5   17     3    3    6    8    9   10   13   15   18   22   24   27   33   36   43   46   50   53   56   59 
LCS_GDT     A      72     A      72      4    5   16     3    3    4    6    9   10   13   15   18   22   24   27   33   36   43   46   50   53   56   59 
LCS_GDT     H      73     H      73      3    5   13     0    3    3    4    8    9   13   15   18   22   24   27   33   36   43   46   50   53   56   59 
LCS_GDT     L      74     L      74      3    4   18     2    3    3    4    7    9   11   16   18   20   27   30   34   36   43   46   50   53   56   59 
LCS_GDT     I      75     I      75      3    4   18     0    3    3    4    7   10   12   16   23   24   30   33   35   38   40   43   50   53   56   59 
LCS_GDT     T      76     T      76      5    5   18     3    4    5    5    6    8    9   15   17   18   21   26   32   36   40   42   46   51   54   57 
LCS_GDT     V      77     V      77      5    5   18     3    4    5    5    8   16   18   21   25   28   30   33   35   38   41   43   47   51   54   57 
LCS_GDT     P      78     P      78      5    5   25     3    4    5    5    7   15   18   21   25   29   32   35   37   42   44   47   49   52   54   56 
LCS_GDT     D      79     D      79      5    8   25     3    4    5    7    7   15   18   21   25   29   32   35   38   42   44   47   50   52   54   56 
LCS_GDT     A      80     A      80      5    8   27     3    4    5    7    7   12   18   22   25   30   33   36   40   43   47   49   51   53   54   57 
LCS_GDT     S      81     S      81      3    8   31     3    3    4    7    8   13   20   26   30   33   37   41   45   47   50   52   55   58   60   62 
LCS_GDT     S      82     S      82      5    8   31     3    5    5    5    6   11   14   15   18   19   28   38   41   46   50   52   55   58   60   62 
LCS_GDT     R      83     R      83      5    8   31     3    5    5    7    7    8    8   13   15   19   21   24   31   35   42   52   55   58   60   62 
LCS_GDT     G      84     G      84      5    8   31     3    5    5    7    7   15   17   18   19   22   28   30   39   40   47   52   54   58   60   62 
LCS_GDT     N      85     N      85      5    8   31     3    5   10   12   14   15   17   18   23   28   32   36   42   47   50   52   55   58   60   62 
LCS_GDT     T      86     T      86      5    8   31     3    5    6   10   14   15   17   18   23   28   32   36   42   47   50   52   55   58   60   62 
LCS_GDT     P      87     P      87      4    6   31     3    4    4    5    7   15   16   18   20   22   29   33   39   47   48   52   55   58   60   62 
LCS_GDT     T      88     T      88      4   13   43     3    4    4    5   11   12   15   16   24   28   31   35   38   47   48   52   55   58   60   62 
LCS_GDT     N      89     N      89     12   13   43     4    9   11   13   14   15   17   18   21   27   31   35   39   47   48   52   55   58   60   62 
LCS_GDT     A      90     A      90     12   13   44     7    9   12   13   14   15   17   20   23   28   31   35   41   47   50   52   55   58   60   62 
LCS_GDT     H      91     H      91     12   13   44     7    9   12   13   14   15   18   21   26   31   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     S      92     S      92     12   13   44     7    9   12   13   14   15   18   24   29   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     I      93     I      93     12   13   44     6    9   12   13   14   15   18   21   26   31   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     Y      94     Y      94     12   13   44     7    9   12   13   14   15   18   24   29   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     K      95     K      95     12   13   44     7    9   12   13   14   15   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     E      96     E      96     12   13   44     7    9   12   13   14   15   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     L      97     L      97     12   13   44     7    9   12   13   14   15   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     K      98     K      98     12   13   44     4    9   12   16   16   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     P      99     P      99     12   13   44     4    7   13   16   16   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     I     100     I     100     12   13   44     4    9   12   12   15   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     N     101     N     101      4   13   44     3    4    4    6   11   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     Y     102     Y     102      4   13   44     3    4    4    6    9   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     P     103     P     103      4   13   44     3    6    9   10   13   17   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     E     104     E     104      4   13   44     3    5    9   10   15   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     D     105     D     105      5   13   44     3    6    9   10   15   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     T     106     T     106      5   13   44     3    6    9   10   15   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     K     107     K     107      5   13   44     3    4    7   10   15   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     N     108     N     108      7   13   44     3    6    9   10   15   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     V     109     V     109      7   13   44     3    5    7   10   15   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     H     110     H     110      7   13   44     3    6    9   10   13   17   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     F     111     F     111      7   13   44     3    6    9   10   13   17   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     V     112     V     112      7   13   44     3    5    9   10   13   15   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     L     113     L     113      7   13   44     3    6    9   10   13   14   17   23   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     F     114     F     114      7   13   44     3    4    7    8   13   13   15   19   21   24   29   34   39   40   45   49   54   58   60   62 
LCS_GDT     A     115     A     115      4   13   44     3    5    7   10   13   14   19   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     E     116     E     116      4   10   44     3    5    7   10   13   17   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     Y     117     Y     117      4   10   44     3    5    7   10   13   17   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     P     118     P     118     14   16   44     3    5    8   12   15   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     D     119     D     119     14   16   44     6   12   14   16   16   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     V     120     V     120     14   16   44     7   12   14   16   16   18   20   23   25   29   32   39   45   47   50   52   55   58   60   62 
LCS_GDT     L     121     L     121     14   16   44     9   12   14   16   16   18   20   24   27   31   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     S     122     S     122     14   16   44     9   12   14   16   16   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     H     123     H     123     14   16   44     9   12   14   16   16   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     V     124     V     124     14   16   44     9   12   14   16   16   18   20   24   27   31   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     A     125     A     125     14   16   44     9   12   14   16   16   18   20   24   27   32   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     A     126     A     126     14   16   44     9   12   14   16   16   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     I     127     I     127     14   16   44     9   12   14   16   16   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     A     128     A     128     14   16   44     9   12   14   16   16   18   20   24   27   30   36   41   45   47   50   52   55   58   60   62 
LCS_GDT     R     129     R     129     14   16   44     9   12   14   16   16   18   20   24   27   31   36   41   45   47   50   52   55   58   60   62 
LCS_GDT     T     130     T     130     14   16   44     3   12   14   16   16   18   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     F     131     F     131     14   16   44     3   12   14   16   16   18   20   22   25   28   36   40   45   47   50   52   55   58   60   62 
LCS_GDT     C     132     C     132     14   16   44     3    4   14   16   16   18   20   22   25   28   31   34   39   42   45   48   51   54   60   62 
LCS_GDT     K     133     K     133      4   16   44     3    4    5    6    7    9   11   17   22   23   29   37   44   47   50   52   55   58   60   62 
LCS_GDT     F     134     F     134      4    7   41     3    4    5    6    7    8   12   15   19   23   25   27   30   37   43   46   49   52   57   62 
LCS_GDT     S     135     S     135      4    7   30     3    4    5    6    7    8   12   15   18   21   25   27   29   31   35   39   45   49   53   57 
LCS_GDT     M     136     M     136      4    7   28     3    3    5    6    7    8   10   11   14   18   23   26   29   31   34   38   42   49   52   55 
LCS_GDT     K     137     K     137      4    7   28     4    4    5    6    7    8   10   11   14   18   23   26   29   31   34   38   42   49   52   57 
LCS_GDT     T     138     T     138      4    7   28     4    4    4    6    7    8   10   10   12   14   23   26   28   29   30   32   42   49   52   56 
LCS_GDT     S     139     S     139      4    7   28     4    4    4    5    6    8   10   12   18   20   24   27   33   36   43   46   50   53   56   59 
LCS_GDT     G     140     G     140      4    7   28     4    4    6    7    9   12   15   18   19   23   26   27   33   36   43   46   50   53   56   59 
LCS_GDT     I     141     I     141      3    5   28     0    3    4    7    9   12   16   19   22   25   26   28   33   36   43   46   50   53   56   59 
LCS_GDT     R     142     R     142      3    5   28     1    4    4    5    6    7   10   10   13   20   23   27   30   35   38   46   50   53   56   59 
LCS_GDT     E     143     E     143      3    5   28     3    4    4    5    9   12   18   22   23   25   30   33   34   36   43   46   50   53   56   59 
LCS_GDT     L     144     L     144      3    5   28     3    3    3    5    7   12   20   22   24   28   30   33   34   36   43   46   50   53   56   59 
LCS_GDT     N     145     N     145      5    8   28     3    4    5    7    7    9   10   16   23   27   30   33   34   36   40   43   50   53   56   59 
LCS_GDT     V     146     V     146      5    8   28     3    4    5    7    7   15   18   23   25   29   32   35   39   43   47   48   51   54   57   62 
LCS_GDT     N     147     N     147      5    9   28     3    4    5    7    8   15   18   23   25   29   32   35   39   43   47   48   51   53   57   60 
LCS_GDT     I     148     I     148      5    9   28     3    5    7    8    8   11   18   20   25   29   34   40   45   47   50   52   55   58   60   62 
LCS_GDT     D     149     D     149      5    9   28     3    5    7    8    9   12   14   22   25   29   36   40   45   47   50   52   55   58   60   62 
LCS_GDT     V     150     V     150      5    9   26     3    5    7    8   12   17   20   26   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     V     151     V     151      5    9   14     3    5    6    8   12   15   18   21   30   33   38   41   45   47   50   52   55   58   60   62 
LCS_GDT     C     152     C     152      5    9   14     3    5    7    9   13   13   15   19   26   33   36   40   43   47   50   52   55   58   60   62 
LCS_GDT     D     153     D     153      3    9   13     3    3    7    8    8    9   11   13   15   18   18   20   40   47   48   52   55   58   60   62 
LCS_GDT     K     154     K     154      3    9   13     3    3    7    8    8    9   11   13   13   18   18   20   22   22   29   33   40   44   47   50 
LCS_GDT     L     155     L     155      3    9   13     3    3    7    8    8    9   11   13   15   18   19   21   25   30   32   33   37   57   58   59 
LCS_AVERAGE  LCS_A:   9.57  (   4.00    6.02   18.70 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     12     14     16     16     18     20     26     30     33     38     41     45     47     50     52     55     58     60     62 
GDT PERCENT_CA   5.84   7.79   9.09  10.39  10.39  11.69  12.99  16.88  19.48  21.43  24.68  26.62  29.22  30.52  32.47  33.77  35.71  37.66  38.96  40.26
GDT RMS_LOCAL    0.18   0.51   0.77   1.05   1.05   1.43   1.91   3.02   3.23   3.50   4.03   4.19   4.44   4.60   5.02   5.17   5.49   5.76   5.95   6.18
GDT RMS_ALL_CA  20.12  19.79  19.70  20.55  20.55  20.53  19.24  24.19  24.46  24.66  25.28  25.24  25.06  25.23  25.86  25.86  26.20  26.39  26.40  26.45

#      Molecule1      Molecule2       DISTANCE
LGA    T       2      T       2         29.176
LGA    Q       3      Q       3         22.320
LGA    V       4      V       4         15.218
LGA    L       5      L       5         11.037
LGA    V       6      V       6          9.509
LGA    R       7      R       7         13.485
LGA    N       8      N       8         15.754
LGA    G       9      G       9         19.989
LGA    I      10      I      10         25.547
LGA    Q      11      Q      11         30.601
LGA    A      12      A      12         37.314
LGA    V      13      V      13         38.497
LGA    G      14      G      14         44.472
LGA    D      15      D      15         48.364
LGA    G      16      G      16         47.135
LGA    L      17      L      17         43.900
LGA    T      18      T      18         37.084
LGA    S      19      S      19         32.271
LGA    L      20      L      20         29.606
LGA    I      21      I      21         24.832
LGA    I      22      I      22         26.362
LGA    V      23      V      23         26.163
LGA    G      24      G      24         28.932
LGA    K      25      K      25         30.037
LGA    K      26      K      26         33.863
LGA    S      27      S      27         38.408
LGA    V      28      V      28         36.764
LGA    L      29      L      29         39.578
LGA    K      30      K      30         45.420
LGA    N      31      N      31         47.552
LGA    V      32      V      32         44.807
LGA    T      33      T      33         48.105
LGA    F      34      F      34         44.964
LGA    E      35      E      35         46.674
LGA    G      36      G      36         47.921
LGA    K      37      K      37         45.129
LGA    F      38      F      38         38.066
LGA    K      39      K      39         37.280
LGA    E      40      E      40         40.998
LGA    V      41      V      41         34.430
LGA    A      42      A      42         31.897
LGA    Q      43      Q      43         38.801
LGA    K      44      K      44         38.683
LGA    F      45      F      45         33.172
LGA    V      46      V      46         35.113
LGA    T      47      T      47         41.348
LGA    D      48      D      48         44.697
LGA    G      49      G      49         41.854
LGA    D      50      D      50         42.271
LGA    S      51      S      51         37.329
LGA    W      52      W      52         36.604
LGA    N      53      N      53         38.367
LGA    S      54      S      54         35.421
LGA    M      55      M      55         31.974
LGA    I      56      I      56         29.254
LGA    S      57      S      57         33.728
LGA    R      58      R      58         33.206
LGA    I      59      I      59         30.714
LGA    P      60      P      60         26.859
LGA    A      61      A      61         28.860
LGA    S      62      S      62         25.178
LGA    G      63      G      63         18.966
LGA    R      64      R      64         17.849
LGA    H      65      H      65         19.948
LGA    P      66      P      66         18.815
LGA    L      67      L      67         18.926
LGA    H      68      H      68         19.163
LGA    Y      69      Y      69         22.887
LGA    E      70      E      70         21.066
LGA    L      71      L      71         18.843
LGA    A      72      A      72         19.266
LGA    H      73      H      73         19.537
LGA    L      74      L      74         18.166
LGA    I      75      I      75         14.109
LGA    T      76      T      76         16.049
LGA    V      77      V      77         13.626
LGA    P      78      P      78         11.044
LGA    D      79      D      79         10.565
LGA    A      80      A      80          7.239
LGA    S      81      S      81          3.831
LGA    S      82      S      82          8.536
LGA    R      83      R      83         13.761
LGA    G      84      G      84         16.224
LGA    N      85      N      85         11.887
LGA    T      86      T      86         12.054
LGA    P      87      P      87         13.495
LGA    T      88      T      88         11.773
LGA    N      89      N      89         12.845
LGA    A      90      A      90         11.517
LGA    H      91      H      91          8.611
LGA    S      92      S      92          6.672
LGA    I      93      I      93          7.611
LGA    Y      94      Y      94          6.329
LGA    K      95      K      95          4.134
LGA    E      96      E      96          4.485
LGA    L      97      L      97          3.979
LGA    K      98      K      98          2.523
LGA    P      99      P      99          2.632
LGA    I     100      I     100          3.785
LGA    N     101      N     101          2.463
LGA    Y     102      Y     102          3.964
LGA    P     103      P     103          3.944
LGA    E     104      E     104          2.530
LGA    D     105      D     105          2.901
LGA    T     106      T     106          3.266
LGA    K     107      K     107          3.099
LGA    N     108      N     108          3.865
LGA    V     109      V     109          2.800
LGA    H     110      H     110          0.221
LGA    F     111      F     111          2.176
LGA    V     112      V     112          3.339
LGA    L     113      L     113          4.613
LGA    F     114      F     114          8.095
LGA    A     115      A     115          3.767
LGA    E     116      E     116          2.457
LGA    Y     117      Y     117          1.118
LGA    P     118      P     118          1.719
LGA    D     119      D     119          3.711
LGA    V     120      V     120          7.181
LGA    L     121      L     121          7.014
LGA    S     122      S     122          3.528
LGA    H     123      H     123          3.099
LGA    V     124      V     124          6.546
LGA    A     125      A     125          6.550
LGA    A     126      A     126          3.251
LGA    I     127      I     127          4.167
LGA    A     128      A     128          7.677
LGA    R     129      R     129          7.220
LGA    T     130      T     130          4.464
LGA    F     131      F     131          8.180
LGA    C     132      C     132         11.040
LGA    K     133      K     133          9.082
LGA    F     134      F     134         13.463
LGA    S     135      S     135         16.347
LGA    M     136      M     136         22.053
LGA    K     137      K     137         22.552
LGA    T     138      T     138         27.945
LGA    S     139      S     139         25.859
LGA    G     140      G     140         21.534
LGA    I     141      I     141         23.047
LGA    R     142      R     142         22.590
LGA    E     143      E     143         21.714
LGA    L     144      L     144         16.943
LGA    N     145      N     145         14.450
LGA    V     146      V     146         10.239
LGA    N     147      N     147         10.530
LGA    I     148      I     148          7.444
LGA    D     149      D     149          6.865
LGA    V     150      V     150          3.396
LGA    V     151      V     151          4.713
LGA    C     152      C     152          6.625
LGA    D     153      D     153         10.062
LGA    K     154      K     154         15.365
LGA    L     155      L     155         12.154

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  154  154    4.0     26    3.02    17.208    14.320     0.833

LGA_LOCAL      RMSD =  3.020  Number of atoms =   26  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 24.398  Number of atoms =  154 
Std_ALL_ATOMS  RMSD = 16.577  (standard rmsd on all 154 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.680291 * X  +  -0.619624 * Y  +   0.391498 * Z  +  15.377120
  Y_new =  -0.367564 * X  +   0.750537 * Y  +   0.549173 * Z  +  54.595142
  Z_new =  -0.634114 * X  +   0.229697 * Y  +  -0.738335 * Z  +   4.790135 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.839983   -0.301610  [ DEG:   162.7190    -17.2810 ]
  Theta =   0.686863    2.454730  [ DEG:    39.3543    140.6457 ]
  Phi   =  -2.646224    0.495369  [ DEG:  -151.6174     28.3826 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0318TS393_4-D1                               
REMARK     2: T0318_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0318TS393_4-D1.T0318_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  154  154   4.0   26   3.02  14.320    16.58
REMARK  ---------------------------------------------------------- 
MOLECULE T0318TS393_4-D1
PFRMAT TS
TARGET T0318
MODEL 4
PARENT N/A
ATOM      2  CA  THR     2      25.677  23.320  17.064  1.00 25.00           C
ATOM      3  CA  GLN     3      25.551  27.159  17.055  1.00 25.00           C
ATOM      4  CA  VAL     4      25.588  30.935  16.495  1.00 25.00           C
ATOM      5  CA  LEU     5      23.364  33.989  16.070  1.00 25.00           C
ATOM      6  CA  VAL     6      21.410  36.101  18.485  1.00 25.00           C
ATOM      7  CA  ARG     7      18.433  36.303  16.185  1.00 25.00           C
ATOM      8  CA  ASN     8      15.802  33.831  14.982  1.00 25.00           C
ATOM      9  CA  GLY     9      14.807  30.226  15.689  1.00 25.00           C
ATOM     10  CA  ILE    10      12.322  30.036  18.499  1.00 25.00           C
ATOM     11  CA  GLN    11       9.893  27.569  16.823  1.00 25.00           C
ATOM     12  CA  ALA    12       6.331  27.331  15.435  1.00 25.00           C
ATOM     13  CA  VAL    13       5.467  27.664  19.170  1.00 25.00           C
ATOM     14  CA  GLY    14       1.881  27.415  18.016  1.00 25.00           C
ATOM     15  CA  ASP    15       0.283  29.913  15.544  1.00 25.00           C
ATOM     16  CA  GLY    16       1.352  32.516  18.150  1.00 25.00           C
ATOM     17  CA  LEU    17       3.359  35.588  17.381  1.00 25.00           C
ATOM     18  CA  THR    18       7.163  36.142  17.513  1.00 25.00           C
ATOM     19  CA  SER    19       9.657  38.456  15.814  1.00 25.00           C
ATOM     20  CA  LEU    20      10.674  42.031  14.999  1.00 25.00           C
ATOM     21  CA  ILE    21      12.715  45.124  15.551  1.00 25.00           C
ATOM     22  CA  ILE    22      12.026  48.793  16.174  1.00 25.00           C
ATOM     23  CA  VAL    23      11.027  52.492  16.223  1.00 25.00           C
ATOM     24  CA  GLY    24       8.369  53.747  18.665  1.00 25.00           C
ATOM     25  CA  LYS    25       5.422  53.565  21.154  1.00 25.00           C
ATOM     26  CA  LYS    26       3.305  54.469  24.193  1.00 25.00           C
ATOM     27  CA  SER    27       1.888  57.781  25.420  1.00 25.00           C
ATOM     28  CA  VAL    28       5.501  58.814  25.852  1.00 25.00           C
ATOM     29  CA  LEU    29       4.425  61.363  28.484  1.00 25.00           C
ATOM     30  CA  LYS    30       1.533  63.604  29.471  1.00 25.00           C
ATOM     31  CA  ASN    31       0.301  62.502  32.915  1.00 25.00           C
ATOM     32  CA  VAL    32       3.111  60.647  34.784  1.00 25.00           C
ATOM     33  CA  THR    33       4.895  61.747  38.000  1.00 25.00           C
ATOM     34  CA  PHE    34       8.083  59.660  38.157  1.00 25.00           C
ATOM     35  CA  GLU    35       9.309  57.676  41.210  1.00 25.00           C
ATOM     36  CA  GLY    36       7.857  54.317  42.250  1.00 25.00           C
ATOM     37  CA  LYS    37      10.844  53.814  44.564  1.00 25.00           C
ATOM     38  CA  PHE    38      12.952  52.092  41.949  1.00 25.00           C
ATOM     39  CA  LYS    39      13.553  49.533  39.257  1.00 25.00           C
ATOM     40  CA  GLU    40      11.354  51.498  36.813  1.00 25.00           C
ATOM     41  CA  VAL    41      13.964  51.030  34.049  1.00 25.00           C
ATOM     42  CA  ALA    42      14.088  47.271  34.769  1.00 25.00           C
ATOM     43  CA  GLN    43      10.266  47.087  34.599  1.00 25.00           C
ATOM     44  CA  LYS    44      10.301  48.954  31.255  1.00 25.00           C
ATOM     45  CA  PHE    45      12.942  46.532  29.903  1.00 25.00           C
ATOM     46  CA  VAL    46      10.913  43.800  28.234  1.00 25.00           C
ATOM     47  CA  THR    47       8.038  42.556  30.334  1.00 25.00           C
ATOM     48  CA  ASP    48       4.735  43.543  28.634  1.00 25.00           C
ATOM     49  CA  GLY    49       6.754  46.170  26.696  1.00 25.00           C
ATOM     50  CA  ASP    50       8.884  48.632  24.728  1.00 25.00           C
ATOM     51  CA  SER    51      12.591  48.411  23.783  1.00 25.00           C
ATOM     52  CA  TRP    52      11.775  50.901  20.990  1.00 25.00           C
ATOM     53  CA  ASN    53      10.715  53.507  23.588  1.00 25.00           C
ATOM     54  CA  SER    54      13.980  52.952  25.512  1.00 25.00           C
ATOM     55  CA  MET    55      15.987  53.379  22.278  1.00 25.00           C
ATOM     56  CA  ILE    56      19.323  55.183  21.915  1.00 25.00           C
ATOM     57  CA  SER    57      19.150  58.916  22.461  1.00 25.00           C
ATOM     58  CA  ARG    58      15.981  59.523  24.568  1.00 25.00           C
ATOM     59  CA  ILE    59      17.369  63.057  24.649  1.00 25.00           C
ATOM     60  CA  PRO    60      20.090  63.405  27.289  1.00 25.00           C
ATOM     61  CA  ALA    61      18.025  66.185  28.983  1.00 25.00           C
ATOM     62  CA  SER    62      20.947  67.376  31.122  1.00 25.00           C
ATOM     63  CA  GLY    63      21.517  63.951  32.631  1.00 25.00           C
ATOM     64  CA  ARG    64      19.672  60.879  33.866  1.00 25.00           C
ATOM     65  CA  HIS    65      19.231  58.494  30.952  1.00 25.00           C
ATOM     66  CA  PRO    66      22.687  59.215  29.601  1.00 25.00           C
ATOM     67  CA  LEU    67      25.033  56.294  30.317  1.00 25.00           C
ATOM     68  CA  HIS    68      25.080  52.697  31.630  1.00 25.00           C
ATOM     69  CA  TYR    69      21.273  52.768  32.037  1.00 25.00           C
ATOM     70  CA  GLU    70      20.891  54.075  28.457  1.00 25.00           C
ATOM     71  CA  LEU    71      23.175  51.283  27.169  1.00 25.00           C
ATOM     72  CA  ALA    72      21.107  48.680  29.071  1.00 25.00           C
ATOM     73  CA  HIS    73      17.885  50.109  27.573  1.00 25.00           C
ATOM     74  CA  LEU    74      19.415  49.948  24.066  1.00 25.00           C
ATOM     75  CA  ILE    75      19.320  46.181  24.307  1.00 25.00           C
ATOM     76  CA  THR    76      18.184  42.719  23.056  1.00 25.00           C
ATOM     77  CA  VAL    77      15.401  43.052  25.607  1.00 25.00           C
ATOM     78  CA  PRO    78      17.439  44.253  28.634  1.00 25.00           C
ATOM     79  CA  ASP    79      16.234  40.971  30.234  1.00 25.00           C
ATOM     80  CA  ALA    80      16.298  41.297  33.991  1.00 25.00           C
ATOM     81  CA  SER    81      19.384  39.036  33.779  1.00 25.00           C
ATOM     82  CA  SER    82      21.226  42.232  34.560  1.00 25.00           C
ATOM     83  CA  ARG    83      23.948  42.474  37.181  1.00 25.00           C
ATOM     84  CA  GLY    84      25.579  39.080  37.829  1.00 25.00           C
ATOM     85  CA  ASN    85      24.266  37.425  34.627  1.00 25.00           C
ATOM     86  CA  THR    86      26.877  38.940  32.271  1.00 25.00           C
ATOM     87  CA  PRO    87      30.404  39.964  33.280  1.00 25.00           C
ATOM     88  CA  THR    88      28.873  43.138  34.777  1.00 25.00           C
ATOM     89  CA  ASN    89      32.129  45.046  34.125  1.00 25.00           C
ATOM     90  CA  ALA    90      32.160  43.803  30.503  1.00 25.00           C
ATOM     91  CA  HIS    91      28.524  44.922  30.062  1.00 25.00           C
ATOM     92  CA  SER    92      29.387  48.371  31.486  1.00 25.00           C
ATOM     93  CA  ILE    93      32.354  48.648  29.080  1.00 25.00           C
ATOM     94  CA  TYR    94      30.091  47.698  26.140  1.00 25.00           C
ATOM     95  CA  LYS    95      27.541  50.345  27.215  1.00 25.00           C
ATOM     96  CA  GLU    96      30.321  52.971  27.431  1.00 25.00           C
ATOM     97  CA  LEU    97      31.536  52.006  23.930  1.00 25.00           C
ATOM     98  CA  LYS    98      27.965  52.310  22.579  1.00 25.00           C
ATOM     99  CA  PRO    99      27.620  55.764  24.197  1.00 25.00           C
ATOM    100  CA  ILE   100      30.942  56.856  22.634  1.00 25.00           C
ATOM    101  CA  ASN   101      34.189  58.237  24.099  1.00 25.00           C
ATOM    102  CA  TYR   102      37.791  58.156  22.712  1.00 25.00           C
ATOM    103  CA  PRO   103      36.171  57.077  19.425  1.00 25.00           C
ATOM    104  CA  GLU   104      37.827  57.663  16.030  1.00 25.00           C
ATOM    105  CA  ASP   105      41.209  56.451  17.282  1.00 25.00           C
ATOM    106  CA  THR   106      41.220  53.025  18.932  1.00 25.00           C
ATOM    107  CA  LYS   107      40.464  51.107  15.772  1.00 25.00           C
ATOM    108  CA  ASN   108      41.746  47.792  16.999  1.00 25.00           C
ATOM    109  CA  VAL   109      38.688  47.047  19.221  1.00 25.00           C
ATOM    110  CA  HIS   110      36.995  43.742  18.624  1.00 25.00           C
ATOM    111  CA  PHE   111      34.101  41.287  18.799  1.00 25.00           C
ATOM    112  CA  VAL   112      34.251  37.553  19.583  1.00 25.00           C
ATOM    113  CA  LEU   113      30.603  36.784  19.352  1.00 25.00           C
ATOM    114  CA  PHE   114      27.218  35.108  19.246  1.00 25.00           C
ATOM    115  CA  ALA   115      27.070  33.448  22.640  1.00 25.00           C
ATOM    116  CA  GLU   116      26.135  30.241  24.525  1.00 25.00           C
ATOM    117  CA  TYR   117      22.369  30.517  24.171  1.00 25.00           C
ATOM    118  CA  PRO   118      20.004  31.700  26.905  1.00 25.00           C
ATOM    119  CA  ASP   119      19.057  35.221  28.078  1.00 25.00           C
ATOM    120  CA  VAL   120      22.579  35.726  29.491  1.00 25.00           C
ATOM    121  CA  LEU   121      24.103  34.565  26.175  1.00 25.00           C
ATOM    122  CA  SER   122      21.849  37.000  24.261  1.00 25.00           C
ATOM    123  CA  HIS   123      22.907  39.849  26.589  1.00 25.00           C
ATOM    124  CA  VAL   124      26.592  38.961  26.042  1.00 25.00           C
ATOM    125  CA  ALA   125      26.053  38.955  22.250  1.00 25.00           C
ATOM    126  CA  ALA   126      24.355  42.381  22.462  1.00 25.00           C
ATOM    127  CA  ILE   127      27.282  43.733  24.527  1.00 25.00           C
ATOM    128  CA  ALA   128      29.763  42.374  21.946  1.00 25.00           C
ATOM    129  CA  ARG   129      27.772  44.029  19.124  1.00 25.00           C
ATOM    130  CA  THR   130      27.783  47.350  21.033  1.00 25.00           C
ATOM    131  CA  PHE   131      31.569  47.076  21.539  1.00 25.00           C
ATOM    132  CA  CYS   132      32.043  46.386  17.801  1.00 25.00           C
ATOM    133  CA  LYS   133      29.891  49.435  16.941  1.00 25.00           C
ATOM    134  CA  PHE   134      31.963  51.602  19.324  1.00 25.00           C
ATOM    135  CA  SER   135      35.201  52.310  21.077  1.00 25.00           C
ATOM    136  CA  MET   136      37.274  52.791  24.172  1.00 25.00           C
ATOM    137  CA  LYS   137      37.496  53.218  27.943  1.00 25.00           C
ATOM    138  CA  THR   138      38.823  52.690  31.466  1.00 25.00           C
ATOM    139  CA  SER   139      42.024  51.070  30.171  1.00 25.00           C
ATOM    140  CA  GLY   140      44.361  50.278  27.350  1.00 25.00           C
ATOM    141  CA  ILE   141      45.119  47.119  25.390  1.00 25.00           C
ATOM    142  CA  ARG   142      46.308  43.479  25.093  1.00 25.00           C
ATOM    143  CA  GLU   143      42.679  42.816  26.190  1.00 25.00           C
ATOM    144  CA  LEU   144      39.049  43.855  26.635  1.00 25.00           C
ATOM    145  CA  ASN   145      36.048  45.888  25.492  1.00 25.00           C
ATOM    146  CA  VAL   146      34.939  42.795  23.635  1.00 25.00           C
ATOM    147  CA  ASN   147      34.477  39.214  24.806  1.00 25.00           C
ATOM    148  CA  ILE   148      31.044  37.705  24.177  1.00 25.00           C
ATOM    149  CA  ASP   149      32.631  34.265  24.307  1.00 25.00           C
ATOM    150  CA  VAL   150      31.814  32.034  21.350  1.00 25.00           C
ATOM    151  CA  VAL   151      30.472  28.692  19.993  1.00 25.00           C
ATOM    152  CA  CYS   152      32.955  28.587  17.114  1.00 25.00           C
ATOM    153  CA  ASP   153      35.724  29.087  14.539  1.00 25.00           C
ATOM    154  CA  LYS   154      38.005  31.073  12.265  1.00 25.00           C
ATOM    155  CA  LEU   155      36.734  34.065  14.290  1.00 25.00           C
TER
END
