
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  144 (  144),  selected  144 , name T0310TS168_1-D2
# Molecule2: number of CA atoms  144 ( 1137),  selected  144 , name T0310_D2.pdb
# PARAMETERS: T0310TS168_1-D2.T0310_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   144       216 - 359         4.69     4.69
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51       305 - 355         2.00     5.25
  LONGEST_CONTINUOUS_SEGMENT:    51       306 - 356         1.99     5.25
  LCS_AVERAGE:     20.55

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       335 - 348         0.82     6.11
  LCS_AVERAGE:      5.76

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     E     216     E     216      6   28  144     6   17   36   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     G     217     G     217      6   28  144     4   17   36   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     I     218     I     218      6   28  144     4   23   42   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     C     219     C     219      6   28  144     9   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     H     220     H     220      6   28  144     4   23   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     M     221     M     221      6   28  144     4   17   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     Y     222     Y     222      7   28  144     4   18   35   55   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     223     V     223      7   28  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     224     D     224      7   28  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     S     225     S     225     11   28  144     9   23   42   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     E     226     E     226     11   28  144     4   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     A     227     A     227     11   28  144     5   23   34   53   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     S     228     S     228     12   28  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     229     V     229     12   28  144     5   14   36   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     230     D     230     12   28  144     5   13   34   55   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     K     231     K     231     12   28  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     232     V     232     12   28  144     9   21   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     T     233     T     233     12   28  144     9   19   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     R     234     R     234     12   28  144     9   23   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     235     L     235     12   28  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     236     V     236     12   28  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     R     237     R     237     12   28  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     238     D     238     12   28  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     S     239     S     239     12   28  144     9   18   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     K     240     K     240     12   28  144     9   14   30   53   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     C     241     C     241      3   28  144     3   10   28   55   69   82   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     E     242     E     242      3   28  144     3    7   19   34   57   78   90   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     Y     243     Y     243      3   28  144     3    7   11   23   45   70   90   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     P     244     P     244      4    8  144     3    4    4    5   14   25   47   61  101  111  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     A     245     A     245      4    8  144     3   20   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     A     246     A     246      4    8  144     3    4    7   14   28   57   88   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     C     247     C     247      4    8  144     4    4    6   11   25   48   79   92  101  109  115  121  124  127  128  132  134  138  138  139 
LCS_GDT     N     248     N     248      4   13  144     4    7   13   38   62   78   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     A     249     A     249      4   13  144     4   13   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     250     L     250      4   13  144     4    7   13   24   40   61   87   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     E     251     E     251      3   13  144     4   23   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     T     252     T     252      5   13  144     3   12   24   42   57   73   90   98  105  112  117  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     253     L     253      5   13  144     3   12   34   42   57   78   90   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     254     L     254      5   13  144     3    7   12   31   48   73   90   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     I     255     I     255      5   13  144     3    5   12   24   45   66   85   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     H     256     H     256      5   13  144     3    8   22   37   57   77   90   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     R     257     R     257      4   13  144     4    7   14   27   47   61   84   97  105  112  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     258     D     258      5   13  144     4    8   19   33   48   67   87   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     259     L     259      5   13  144     4    7   20   37   60   78   90   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     260     L     260      5   13  144     4   14   34   51   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     R     261     R     261      5   11  144     4    5   18   48   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     T     262     T     262      5   14  144     4   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     P     263     P     263     13   14  144     5   20   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     264     L     264     13   14  144    12   13   14   16   35   53   82   91  105  110  116  121  124  127  129  133  135  138  138  139 
LCS_GDT     F     265     F     265     13   14  144    12   13   14   16   17   17   19   34   63   98  116  120  124  127  129  133  135  138  138  139 
LCS_GDT     D     266     D     266     13   14  144    12   13   14   17   50   77   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     Q     267     Q     267     13   14  144    12   13   23   51   68   79   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     I     268     I     268     13   14  144    12   13   14   24   35   72   84   94  105  112  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     I     269     I     269     13   14  144    12   13   14   17   50   78   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     270     D     270     13   14  144    12   20   40   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     M     271     M     271     13   14  144    12   13   17   37   59   74   89   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     272     L     272     13   14  144    12   13   20   36   63   78   90   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     R     273     R     273     13   14  144    12   21   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     274     V     274     13   14  144    12   13   14   21   38   60   87   97  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     E     275     E     275     13   14  144    12   13   15   24   39   63   80   95  105  112  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     Q     276     Q     276      4   14  144     0    3    6    9   10   14   21   26   35   57   83  112  121  125  129  133  135  138  138  139 
LCS_GDT     V     277     V     277      4    8  144     2    4    6    9   11   17   21   26   36   55   76  112  121  125  129  133  135  138  138  139 
LCS_GDT     K     278     K     278      4    8  144     2    4    6    9   10   14   16   26   29   38   50   66   81   91  109  128  130  135  136  138 
LCS_GDT     I     279     I     279      4    8  144     1    4    6    9   11   17   25   39   50   80   97  112  121  125  129  133  135  138  138  139 
LCS_GDT     H     280     H     280      4    8  144     2    4    6    9   11   17   25   33   56   70   84  106  115  124  128  132  135  138  138  139 
LCS_GDT     A     281     A     281      4    8  144     2    4    6    9   11   26   33   41   60   74   97  106  121  124  129  133  135  138  138  139 
LCS_GDT     G     282     G     282      4    8  144     2    4    4    8   10   14   19   27   41   53   76  104  118  125  129  133  135  138  138  139 
LCS_GDT     P     283     P     283      7    8  144     5    7    7    8    9   16   25   34   54   75  100  112  119  124  129  133  135  138  138  139 
LCS_GDT     K     284     K     284      7    8  144     5    7    7    8    9   11   18   37   55   78   93  112  122  126  129  133  135  138  138  139 
LCS_GDT     F     285     F     285      7    8  144     5    7    7    8   11   29   52   73  104  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     A     286     A     286      7    8  144     5    8   19   36   64   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     S     287     S     287      7    8  144     5   22   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     Y     288     Y     288      7    8  144     4    9   16   37   58   72   82   95  105  111  116  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     289     L     289      7    8  144     4    7    7    8   15   23   32   59  100  110  116  121  124  126  129  133  135  138  138  139 
LCS_GDT     T     290     T     290      3    8  144     3    3    3    6    9   10   10   12   17   20   58   62   74   88  107  117  130  131  133  136 
LCS_GDT     F     291     F     291      3    3  144     3    3    3    9   12   17   30   35   47   97  104  117  122  125  128  131  133  136  137  139 
LCS_GDT     V     292     V     292      3    4  144     3    3    3   29   49   69   85   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     K     293     K     293      3    5  144     3    3    3    6   35   43   70   92  104  111  114  121  124  127  129  133  135  138  138  139 
LCS_GDT     S     294     S     294      4    5  144     3    4    5    6   14   55   75   87  104  113  117  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     295     L     295      4    5  144     3    4    4    4    4    6    8   11   22   23   27   33   40  109  114  124  128  132  134  139 
LCS_GDT     R     296     R     296      4    5  144     3    4    4    4    4    5    6   29   33   41   53   65   74   80  114  120  127  128  134  139 
LCS_GDT     T     297     T     297      4    5  144     3    4    4    5   10   17   36   54   69  105  115  121  124  127  129  131  135  138  138  139 
LCS_GDT     E     298     E     298      3    6  144     4   13   14   16   17   17   17   19   22   30   41   47   60   80  115  121  126  133  137  139 
LCS_GDT     Y     299     Y     299      3    6  144     3    3   14   16   17   17   19   23   30   41   47   69  104  118  125  130  133  138  138  139 
LCS_GDT     G     300     G     300      3    8  144     3   11   14   16   17   17   27   41   50   64   95  113  118  123  129  130  134  138  138  139 
LCS_GDT     D     301     D     301      3   16  144     3    5    9   15   25   36   59   83  101  109  117  121  123  127  129  133  135  138  138  139 
LCS_GDT     L     302     L     302      3   16  144     3    3    8   19   28   54   71   91  103  111  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     E     303     E     303      4   19  144     3    7   15   24   39   63   75   91  105  112  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     304     L     304      4   42  144     3   10   31   56   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     C     305     C     305      4   51  144     3    5   30   52   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     I     306     I     306      5   51  144     3    5   33   53   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     E     307     E     307      5   51  144     3   14   33   52   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     308     V     308      5   51  144     3    9   22   51   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     309     V     309     13   51  144     3   14   30   50   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     310     D     310     13   51  144     3   13   29   50   67   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     N     311     N     311     13   51  144     3   10   29   50   67   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     312     V     312     13   51  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     Q     313     Q     313     13   51  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     314     D     314     13   51  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     A     315     A     315     13   51  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     I     316     I     316     13   51  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     317     D     317     13   51  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     H     318     H     318     13   51  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     I     319     I     319     13   51  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     H     320     H     320     13   51  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     K     321     K     321     13   51  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     Y     322     Y     322     13   51  144     4   17   38   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     G     323     G     323     13   51  144     3    7   23   52   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     S     324     S     324     13   51  144     4   21   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     S     325     S     325      6   51  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     H     326     H     326      6   51  144    11   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     T     327     T     327      6   51  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     328     D     328      5   51  144     4   11   32   55   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     329     V     329      5   51  144     5   23   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     I     330     I     330      5   51  144     4   13   35   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     331     V     331      5   51  144     4    8   28   50   68   82   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     T     332     T     332      4   51  144     4   13   25   42   62   81   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     E     333     E     333      4   51  144     3    3   17   26   59   79   88   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     334     D     334      4   51  144     7   23   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     E     335     E     335     14   51  144    10   17   33   54   68   81   91   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     N     336     N     336     14   51  144    10   18   38   57   69   82   91   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     T     337     T     337     14   51  144    10   17   35   55   69   82   91   98  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     A     338     A     338     14   51  144    10   17   35   55   69   82   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     E     339     E     339     14   51  144    10   21   42   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     F     340     F     340     14   51  144    10   21   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     F     341     F     341     14   51  144    10   21   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     L     342     L     342     14   51  144    10   23   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     Q     343     Q     343     14   51  144    10   23   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     H     344     H     344     14   51  144    10   23   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     345     V     345     14   51  144     4   19   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     D     346     D     346     14   51  144     3    6   29   50   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     S     347     S     347     14   51  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     A     348     A     348     14   51  144    10   17   37   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     C     349     C     349      8   51  144     3    7   26   51   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     V     350     V     350      8   51  144     3    7   28   51   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     F     351     F     351      8   51  144     3   23   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     W     352     W     352      8   51  144     9   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     N     353     N     353      8   51  144     9   14   32   56   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     A     354     A     354      8   51  144     3   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     S     355     S     355      8   51  144    10   26   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     T     356     T     356      8   51  144     8   16   43   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     R     357     R     357      7   49  144     4   16   39   57   70   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     F     358     F     358      7   49  144     4   12   33   56   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_GDT     S     359     S     359      7   49  144     4   12   33   56   69   83   91   99  105  113  118  121  124  127  129  133  135  138  138  139 
LCS_AVERAGE  LCS_A:  42.11  (   5.76   20.55  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     26     43     57     70     83     91     99    105    113    118    121    124    127    129    133    135    138    138    139 
GDT PERCENT_CA   8.33  18.06  29.86  39.58  48.61  57.64  63.19  68.75  72.92  78.47  81.94  84.03  86.11  88.19  89.58  92.36  93.75  95.83  95.83  96.53
GDT RMS_LOCAL    0.23   0.67   1.05   1.26   1.56   1.82   2.00   2.29   2.40   2.73   2.91   3.01   3.13   3.31   3.57   3.78   3.90   4.10   4.10   4.20
GDT RMS_ALL_CA  18.13   4.87   4.84   4.87   4.94   4.84   4.84   4.76   4.84   4.77   4.74   4.81   4.79   4.73   4.70   4.71   4.71   4.70   4.70   4.70

#      Molecule1      Molecule2       DISTANCE
LGA    E     216      E     216          3.802
LGA    G     217      G     217          3.879
LGA    I     218      I     218          2.840
LGA    C     219      C     219          1.647
LGA    H     220      H     220          0.547
LGA    M     221      M     221          1.378
LGA    Y     222      Y     222          2.334
LGA    V     223      V     223          1.056
LGA    D     224      D     224          0.633
LGA    S     225      S     225          1.286
LGA    E     226      E     226          1.528
LGA    A     227      A     227          2.660
LGA    S     228      S     228          1.242
LGA    V     229      V     229          1.760
LGA    D     230      D     230          1.822
LGA    K     231      K     231          1.077
LGA    V     232      V     232          1.485
LGA    T     233      T     233          1.675
LGA    R     234      R     234          2.035
LGA    L     235      L     235          1.109
LGA    V     236      V     236          1.101
LGA    R     237      R     237          1.904
LGA    D     238      D     238          2.042
LGA    S     239      S     239          1.427
LGA    K     240      K     240          2.910
LGA    C     241      C     241          1.918
LGA    E     242      E     242          3.578
LGA    Y     243      Y     243          3.999
LGA    P     244      P     244          5.710
LGA    A     245      A     245          1.664
LGA    A     246      A     246          3.909
LGA    C     247      C     247          6.335
LGA    N     248      N     248          3.334
LGA    A     249      A     249          1.751
LGA    L     250      L     250          3.963
LGA    E     251      E     251          1.574
LGA    T     252      T     252          5.380
LGA    L     253      L     253          4.652
LGA    L     254      L     254          5.031
LGA    I     255      I     255          5.461
LGA    H     256      H     256          4.214
LGA    R     257      R     257          5.731
LGA    D     258      D     258          5.475
LGA    L     259      L     259          4.596
LGA    L     260      L     260          3.054
LGA    R     261      R     261          2.624
LGA    T     262      T     262          1.113
LGA    P     263      P     263          1.263
LGA    L     264      L     264          5.897
LGA    F     265      F     265          6.434
LGA    D     266      D     266          3.452
LGA    Q     267      Q     267          2.659
LGA    I     268      I     268          4.627
LGA    I     269      I     269          3.190
LGA    D     270      D     270          1.701
LGA    M     271      M     271          3.749
LGA    L     272      L     272          2.857
LGA    R     273      R     273          1.534
LGA    V     274      V     274          4.542
LGA    E     275      E     275          4.768
LGA    Q     276      Q     276          8.619
LGA    V     277      V     277          8.591
LGA    K     278      K     278         11.144
LGA    I     279      I     279          8.615
LGA    H     280      H     280          9.342
LGA    A     281      A     281          8.564
LGA    G     282      G     282          9.006
LGA    P     283      P     283         10.251
LGA    K     284      K     284          9.418
LGA    F     285      F     285          6.637
LGA    A     286      A     286          3.770
LGA    S     287      S     287          3.049
LGA    Y     288      Y     288          7.016
LGA    L     289      L     289          7.180
LGA    T     290      T     290         12.015
LGA    F     291      F     291          9.109
LGA    V     292      V     292          6.192
LGA    K     293      K     293          7.346
LGA    S     294      S     294          7.120
LGA    L     295      L     295         12.327
LGA    R     296      R     296         13.074
LGA    T     297      T     297          7.753
LGA    E     298      E     298         13.020
LGA    Y     299      Y     299         10.819
LGA    G     300      G     300          9.893
LGA    D     301      D     301          6.528
LGA    L     302      L     302          5.245
LGA    E     303      E     303          5.219
LGA    L     304      L     304          1.504
LGA    C     305      C     305          3.176
LGA    I     306      I     306          3.102
LGA    E     307      E     307          3.709
LGA    V     308      V     308          2.680
LGA    V     309      V     309          3.048
LGA    D     310      D     310          2.973
LGA    N     311      N     311          3.079
LGA    V     312      V     312          1.034
LGA    Q     313      Q     313          1.883
LGA    D     314      D     314          1.952
LGA    A     315      A     315          1.051
LGA    I     316      I     316          1.213
LGA    D     317      D     317          2.069
LGA    H     318      H     318          1.797
LGA    I     319      I     319          0.681
LGA    H     320      H     320          1.479
LGA    K     321      K     321          2.223
LGA    Y     322      Y     322          1.671
LGA    G     323      G     323          2.279
LGA    S     324      S     324          1.020
LGA    S     325      S     325          0.375
LGA    H     326      H     326          0.927
LGA    T     327      T     327          1.175
LGA    D     328      D     328          2.337
LGA    V     329      V     329          1.792
LGA    I     330      I     330          2.547
LGA    V     331      V     331          3.611
LGA    T     332      T     332          3.929
LGA    E     333      E     333          4.894
LGA    D     334      D     334          1.834
LGA    E     335      E     335          5.237
LGA    N     336      N     336          4.711
LGA    T     337      T     337          4.235
LGA    A     338      A     338          3.989
LGA    E     339      E     339          3.897
LGA    F     340      F     340          3.385
LGA    F     341      F     341          2.666
LGA    L     342      L     342          2.772
LGA    Q     343      Q     343          2.786
LGA    H     344      H     344          2.043
LGA    V     345      V     345          1.921
LGA    D     346      D     346          2.911
LGA    S     347      S     347          1.557
LGA    A     348      A     348          2.734
LGA    C     349      C     349          3.179
LGA    V     350      V     350          2.666
LGA    F     351      F     351          2.421
LGA    W     352      W     352          1.438
LGA    N     353      N     353          1.965
LGA    A     354      A     354          1.486
LGA    S     355      S     355          1.134
LGA    T     356      T     356          1.316
LGA    R     357      R     357          1.507
LGA    F     358      F     358          1.080
LGA    S     359      S     359          1.172

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  144  144    4.0     99    2.29    54.688    49.714     4.139

LGA_LOCAL      RMSD =  2.292  Number of atoms =   99  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.745  Number of atoms =  144 
Std_ALL_ATOMS  RMSD =  4.693  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.879411 * X  +  -0.471566 * Y  +   0.065283 * Z  + 136.108139
  Y_new =  -0.061483 * X  +   0.023481 * Y  +   0.997832 * Z  +   2.902416
  Z_new =  -0.472076 * X  +  -0.881518 * Y  +  -0.008344 * Z  +  22.844252 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.580261    1.561332  [ DEG:   -90.5423     89.4577 ]
  Theta =   0.491644    2.649948  [ DEG:    28.1691    151.8309 ]
  Phi   =  -0.069800    3.071793  [ DEG:    -3.9992    176.0008 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0310TS168_1-D2                               
REMARK     2: T0310_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0310TS168_1-D2.T0310_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  144  144   4.0   99   2.29  49.714     4.69
REMARK  ---------------------------------------------------------- 
MOLECULE T0310TS168_1-D2
PFRMAT TS
TARGET T0310
MODEL 1
PARENT N/A
ATOM    216  CA  GLU   216     137.596   9.047  19.963  1.00 25.00           C
ATOM    217  CA  GLY   217     138.561  11.120  23.056  1.00 25.00           C
ATOM    218  CA  ILE   218     137.267  14.089  21.144  1.00 25.00           C
ATOM    219  CA  CYS   219     138.260  16.429  23.912  1.00 25.00           C
ATOM    220  CA  HIS   220     137.232  20.131  23.768  1.00 25.00           C
ATOM    221  CA  MET   221     137.806  22.267  26.874  1.00 25.00           C
ATOM    222  CA  TYR   222     138.939  24.707  29.563  1.00 25.00           C
ATOM    223  CA  VAL   223     140.302  28.116  30.501  1.00 25.00           C
ATOM    224  CA  ASP   224     137.739  30.648  31.740  1.00 25.00           C
ATOM    225  CA  SER   225     137.671  33.820  33.759  1.00 25.00           C
ATOM    226  CA  GLU   226     138.947  33.538  37.272  1.00 25.00           C
ATOM    227  CA  ALA   227     140.618  30.161  37.742  1.00 25.00           C
ATOM    228  CA  SER   228     144.404  30.604  38.260  1.00 25.00           C
ATOM    229  CA  VAL   229     146.008  31.035  34.856  1.00 25.00           C
ATOM    230  CA  ASP   230     148.967  28.937  36.087  1.00 25.00           C
ATOM    231  CA  LYS   231     146.618  25.997  36.798  1.00 25.00           C
ATOM    232  CA  VAL   232     145.119  26.314  33.288  1.00 25.00           C
ATOM    233  CA  THR   233     148.632  26.341  31.764  1.00 25.00           C
ATOM    234  CA  ARG   234     149.553  23.213  33.770  1.00 25.00           C
ATOM    235  CA  LEU   235     146.363  21.469  32.565  1.00 25.00           C
ATOM    236  CA  VAL   236     147.192  22.402  28.944  1.00 25.00           C
ATOM    237  CA  ARG   237     150.738  21.019  29.374  1.00 25.00           C
ATOM    238  CA  ASP   238     149.320  17.765  30.813  1.00 25.00           C
ATOM    239  CA  SER   239     146.910  17.476  27.851  1.00 25.00           C
ATOM    240  CA  LYS   240     149.807  18.028  25.408  1.00 25.00           C
ATOM    241  CA  CYS   241     150.235  15.485  22.598  1.00 25.00           C
ATOM    242  CA  GLU   242     150.791  11.787  23.270  1.00 25.00           C
ATOM    243  CA  TYR   243     151.114   9.222  20.478  1.00 25.00           C
ATOM    244  CA  PRO   244     149.357   8.676  17.210  1.00 25.00           C
ATOM    245  CA  ALA   245     146.250   9.094  19.372  1.00 25.00           C
ATOM    246  CA  ALA   246     145.406   5.557  20.635  1.00 25.00           C
ATOM    247  CA  CYS   247     145.622   6.504  24.268  1.00 25.00           C
ATOM    248  CA  ASN   248     143.079   9.299  24.477  1.00 25.00           C
ATOM    249  CA  ALA   249     144.508  12.752  23.788  1.00 25.00           C
ATOM    250  CA  LEU   250     142.281  14.319  21.167  1.00 25.00           C
ATOM    251  CA  GLU   251     141.535  17.940  20.641  1.00 25.00           C
ATOM    252  CA  THR   252     142.406  19.429  23.997  1.00 25.00           C
ATOM    253  CA  LEU   253     142.719  22.322  26.448  1.00 25.00           C
ATOM    254  CA  LEU   254     142.689  26.137  26.161  1.00 25.00           C
ATOM    255  CA  ILE   255     144.521  29.329  27.275  1.00 25.00           C
ATOM    256  CA  HIS   256     141.459  31.564  26.981  1.00 25.00           C
ATOM    257  CA  ARG   257     140.619  34.116  29.677  1.00 25.00           C
ATOM    258  CA  ASP   258     142.811  36.245  31.984  1.00 25.00           C
ATOM    259  CA  LEU   259     145.960  34.618  30.534  1.00 25.00           C
ATOM    260  CA  LEU   260     144.718  35.324  26.980  1.00 25.00           C
ATOM    261  CA  ARG   261     144.045  38.977  27.915  1.00 25.00           C
ATOM    262  CA  THR   262     147.565  39.273  29.395  1.00 25.00           C
ATOM    263  CA  PRO   263     150.725  37.175  29.600  1.00 25.00           C
ATOM    264  CA  LEU   264     149.159  36.483  26.181  1.00 25.00           C
ATOM    265  CA  PHE   265     151.063  36.377  22.860  1.00 25.00           C
ATOM    266  CA  ASP   266     154.060  34.749  24.603  1.00 25.00           C
ATOM    267  CA  GLN   267     151.750  32.145  26.197  1.00 25.00           C
ATOM    268  CA  ILE   268     150.190  31.400  22.779  1.00 25.00           C
ATOM    269  CA  ILE   269     153.677  30.987  21.250  1.00 25.00           C
ATOM    270  CA  ASP   270     154.661  28.598  24.078  1.00 25.00           C
ATOM    271  CA  MET   271     151.466  26.564  23.504  1.00 25.00           C
ATOM    272  CA  LEU   272     152.227  26.382  19.754  1.00 25.00           C
ATOM    273  CA  ARG   273     155.791  25.202  20.509  1.00 25.00           C
ATOM    274  CA  VAL   274     154.428  22.517  22.875  1.00 25.00           C
ATOM    275  CA  GLU   275     151.636  21.316  20.638  1.00 25.00           C
ATOM    276  CA  GLN   276     147.927  21.712  21.330  1.00 25.00           C
ATOM    277  CA  VAL   277     144.391  23.120  21.463  1.00 25.00           C
ATOM    278  CA  LYS   278     141.167  24.834  20.270  1.00 25.00           C
ATOM    279  CA  ILE   279     139.974  27.783  18.252  1.00 25.00           C
ATOM    280  CA  HIS   280     137.487  30.626  17.855  1.00 25.00           C
ATOM    281  CA  ALA   281     136.997  34.274  18.955  1.00 25.00           C
ATOM    282  CA  GLY   282     137.789  37.991  18.815  1.00 25.00           C
ATOM    283  CA  PRO   283     140.319  40.840  18.448  1.00 25.00           C
ATOM    284  CA  LYS   284     143.153  41.089  15.883  1.00 25.00           C
ATOM    285  CA  PHE   285     145.127  38.402  17.767  1.00 25.00           C
ATOM    286  CA  ALA   286     142.043  36.132  17.812  1.00 25.00           C
ATOM    287  CA  SER   287     141.575  36.653  14.046  1.00 25.00           C
ATOM    288  CA  TYR   288     145.257  35.788  13.445  1.00 25.00           C
ATOM    289  CA  LEU   289     144.881  32.613  15.553  1.00 25.00           C
ATOM    290  CA  THR   290     141.765  31.627  13.557  1.00 25.00           C
ATOM    291  CA  PHE   291     143.658  32.190  10.276  1.00 25.00           C
ATOM    292  CA  VAL   292     146.551  30.026  11.546  1.00 25.00           C
ATOM    293  CA  LYS   293     144.088  27.260  12.520  1.00 25.00           C
ATOM    294  CA  SER   294     142.485  27.431   9.046  1.00 25.00           C
ATOM    295  CA  LEU   295     145.941  27.183   7.412  1.00 25.00           C
ATOM    296  CA  ARG   296     146.778  24.145   9.589  1.00 25.00           C
ATOM    297  CA  THR   297     143.467  22.494   8.601  1.00 25.00           C
ATOM    298  CA  GLU   298     144.215  23.151   4.902  1.00 25.00           C
ATOM    299  CA  TYR   299     147.701  21.620   5.309  1.00 25.00           C
ATOM    300  CA  GLY   300     147.247  19.133   8.152  1.00 25.00           C
ATOM    301  CA  ASP   301     145.636  16.943  10.829  1.00 25.00           C
ATOM    302  CA  LEU   302     146.528  18.195  14.263  1.00 25.00           C
ATOM    303  CA  GLU   303     143.138  19.584  15.203  1.00 25.00           C
ATOM    304  CA  LEU   304     144.755  22.830  16.444  1.00 25.00           C
ATOM    305  CA  CYS   305     145.248  26.329  17.666  1.00 25.00           C
ATOM    306  CA  ILE   306     145.069  28.972  20.386  1.00 25.00           C
ATOM    307  CA  GLU   307     141.683  29.619  21.965  1.00 25.00           C
ATOM    308  CA  VAL   308     138.162  30.378  23.223  1.00 25.00           C
ATOM    309  CA  VAL   309     136.164  32.497  25.649  1.00 25.00           C
ATOM    310  CA  ASP   310     133.936  35.012  27.424  1.00 25.00           C
ATOM    311  CA  ASN   311     132.692  33.617  30.706  1.00 25.00           C
ATOM    312  CA  VAL   312     131.230  30.439  29.278  1.00 25.00           C
ATOM    313  CA  GLN   313     128.498  30.706  26.607  1.00 25.00           C
ATOM    314  CA  ASP   314     131.163  30.831  23.859  1.00 25.00           C
ATOM    315  CA  ALA   315     132.865  27.735  25.335  1.00 25.00           C
ATOM    316  CA  ILE   316     129.506  25.898  25.420  1.00 25.00           C
ATOM    317  CA  ASP   317     128.867  26.846  21.765  1.00 25.00           C
ATOM    318  CA  HIS   318     132.345  25.567  20.799  1.00 25.00           C
ATOM    319  CA  ILE   319     131.673  22.276  22.639  1.00 25.00           C
ATOM    320  CA  HIS   320     128.325  21.913  20.817  1.00 25.00           C
ATOM    321  CA  LYS   321     130.056  22.543  17.459  1.00 25.00           C
ATOM    322  CA  TYR   322     131.250  19.199  16.185  1.00 25.00           C
ATOM    323  CA  GLY   323     130.433  16.943  19.157  1.00 25.00           C
ATOM    324  CA  SER   324     131.660  13.353  19.570  1.00 25.00           C
ATOM    325  CA  SER   325     130.548  13.832  23.192  1.00 25.00           C
ATOM    326  CA  HIS   326     133.701  12.440  24.854  1.00 25.00           C
ATOM    327  CA  THR   327     135.680  14.002  27.719  1.00 25.00           C
ATOM    328  CA  ASP   328     137.177  17.368  28.758  1.00 25.00           C
ATOM    329  CA  VAL   329     135.408  20.127  30.764  1.00 25.00           C
ATOM    330  CA  ILE   330     134.179  23.634  31.598  1.00 25.00           C
ATOM    331  CA  VAL   331     136.167  25.425  34.293  1.00 25.00           C
ATOM    332  CA  THR   332     135.051  26.433  37.809  1.00 25.00           C
ATOM    333  CA  GLU   333     134.967  30.141  37.082  1.00 25.00           C
ATOM    334  CA  ASP   334     133.733  30.490  40.659  1.00 25.00           C
ATOM    335  CA  GLU   335     130.024  30.513  39.791  1.00 25.00           C
ATOM    336  CA  ASN   336     126.598  30.767  38.100  1.00 25.00           C
ATOM    337  CA  THR   337     128.275  30.833  34.658  1.00 25.00           C
ATOM    338  CA  ALA   338     130.339  27.741  35.576  1.00 25.00           C
ATOM    339  CA  GLU   339     127.166  25.935  36.732  1.00 25.00           C
ATOM    340  CA  PHE   340     125.425  26.840  33.444  1.00 25.00           C
ATOM    341  CA  PHE   341     128.424  25.518  31.463  1.00 25.00           C
ATOM    342  CA  LEU   342     128.344  22.258  33.472  1.00 25.00           C
ATOM    343  CA  GLN   343     124.594  21.898  32.788  1.00 25.00           C
ATOM    344  CA  HIS   344     125.195  22.469  29.049  1.00 25.00           C
ATOM    345  CA  VAL   345     127.659  20.490  26.907  1.00 25.00           C
ATOM    346  CA  ASP   346     127.780  17.675  29.424  1.00 25.00           C
ATOM    347  CA  SER   347     130.043  15.039  27.991  1.00 25.00           C
ATOM    348  CA  ALA   348     129.959  12.135  30.392  1.00 25.00           C
ATOM    349  CA  CYS   349     132.596  11.190  32.933  1.00 25.00           C
ATOM    350  CA  VAL   350     132.259  14.875  33.712  1.00 25.00           C
ATOM    351  CA  PHE   351     134.575  17.394  35.439  1.00 25.00           C
ATOM    352  CA  TRP   352     136.118  20.522  36.854  1.00 25.00           C
ATOM    353  CA  ASN   353     139.244  21.252  34.890  1.00 25.00           C
ATOM    354  CA  ALA   354     142.136  18.930  35.545  1.00 25.00           C
ATOM    355  CA  SER   355     142.832  16.719  32.522  1.00 25.00           C
ATOM    356  CA  THR   356     142.216  14.547  29.456  1.00 25.00           C
ATOM    357  CA  ARG   357     144.669  11.638  29.886  1.00 25.00           C
ATOM    358  CA  PHE   358     142.038   9.678  31.862  1.00 25.00           C
ATOM    359  CA  SER   359     139.484   8.117  29.571  1.00 25.00           C
TER
END
